Query psy4613
Match_columns 96
No_of_seqs 105 out of 1943
Neff 12.5
Searched_HMMs 29240
Date Fri Aug 16 21:23:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4613.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4613hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3knb_A Titin; IG-like, titin, 99.8 4.9E-19 1.7E-23 81.6 10.3 90 1-95 5-95 (100)
2 3knb_B Obscurin-like protein 1 99.8 4.7E-19 1.6E-23 82.5 10.0 89 1-95 13-101 (107)
3 1u2h_A APEG-1, aortic preferen 99.8 1.3E-17 4.5E-22 76.4 10.6 90 1-95 5-94 (99)
4 3qp3_A Titin; I-SET IG-like, s 99.8 3.6E-17 1.2E-21 75.4 11.3 89 1-95 8-96 (103)
5 1g1c_A Immunoglobulin-like dom 99.8 3.6E-17 1.2E-21 74.9 11.0 90 1-95 5-94 (99)
6 2cqv_A MLCK, myosin light chai 99.8 4E-17 1.4E-21 76.6 11.2 89 1-95 7-95 (114)
7 1wit_A Twitchin 18TH IGSF modu 99.8 1.2E-17 4.2E-22 75.8 9.1 87 1-95 2-90 (93)
8 3puc_A Titin; I-SET IG-like do 99.8 9.3E-17 3.2E-21 73.5 11.2 88 2-95 7-94 (99)
9 2kdg_A Myotilin; immonoglobuli 99.7 4.5E-17 1.5E-21 74.7 9.4 89 2-95 6-94 (100)
10 3irg_A Titin; IG-like, titin, 99.7 1.3E-16 4.6E-21 73.0 10.3 89 2-95 6-95 (100)
11 2bk8_A Connectin, M1, titin he 99.7 8.5E-16 2.9E-20 70.1 12.2 87 3-95 3-90 (97)
12 1nct_A Titin; cell adhesion, g 99.7 5.6E-17 1.9E-21 75.3 8.2 89 1-95 14-102 (106)
13 2yr3_A Myosin light chain kina 99.7 4E-17 1.4E-21 74.8 7.5 86 1-95 11-96 (99)
14 3irg_B Obscurin-like protein 1 99.7 2.2E-16 7.4E-21 73.2 10.0 88 2-95 14-101 (107)
15 2dm2_A Palladin; beta-sandwich 99.7 8.8E-17 3E-21 75.0 8.6 89 1-93 8-96 (110)
16 2kkq_A Myotilin; unknown funct 99.7 1.3E-16 4.4E-21 75.2 9.0 90 2-95 16-105 (116)
17 1gxe_A Myosin binding protein 99.7 1E-16 3.6E-21 77.7 8.6 83 8-95 25-135 (139)
18 2edj_A Roundabout homolog 2; K 99.7 3E-17 1E-21 75.4 6.4 87 1-95 8-94 (100)
19 2e7c_A Myosin-binding protein 99.7 7.2E-16 2.5E-20 72.7 10.4 81 8-95 31-111 (118)
20 2dm3_A KIAA0992 protein, palla 99.7 7E-17 2.4E-21 75.2 6.8 90 1-95 9-98 (110)
21 2eo9_A Roundabout homolog 1; b 99.7 6.5E-17 2.2E-21 76.3 6.0 86 1-94 8-93 (118)
22 3cx2_A Myosin-binding protein 99.7 1.2E-15 4E-20 71.0 9.8 94 2-95 5-104 (108)
23 1fhg_A Telokin; immunoglobulin 99.7 2.3E-15 7.8E-20 74.0 11.3 89 2-95 42-130 (154)
24 2ckn_A Basic fibroblast growth 99.7 2.3E-16 7.8E-21 71.9 7.1 83 2-95 10-92 (95)
25 1wwb_X Protein (brain derived 99.7 7.1E-15 2.4E-19 67.9 11.9 81 14-95 14-94 (103)
26 3kvq_A Vascular endothelial gr 99.7 1.3E-16 4.4E-21 74.1 5.9 86 2-95 11-96 (108)
27 1waa_A Titin; metal binding pr 99.7 3.3E-15 1.1E-19 67.9 9.4 79 1-86 5-83 (93)
28 3qr2_A Basigin; CD147, EMMPRIN 99.7 5.2E-15 1.8E-19 71.4 10.1 87 1-89 21-116 (137)
29 3caf_A Fibroblast growth facto 99.7 5.4E-16 1.8E-20 71.1 6.2 80 9-95 16-97 (100)
30 2yuz_A Myosin-binding protein 99.7 4.2E-15 1.4E-19 68.4 9.0 77 2-86 8-84 (100)
31 3rbs_A Myomesin-1; immunoglobu 99.6 5.5E-15 1.9E-19 75.7 9.1 77 11-95 126-203 (207)
32 3bfo_A Mucosa-associated lymph 99.6 5E-15 1.7E-19 66.9 7.3 74 2-90 4-77 (91)
33 2dlt_A Myosin binding protein 99.6 8.9E-15 3.1E-19 67.8 8.3 79 1-86 8-86 (106)
34 1he7_A High affinity nerve gro 99.6 5.6E-14 1.9E-18 66.9 10.8 80 15-95 14-95 (126)
35 2lvc_A Obscurin-like protein 1 99.6 4.5E-15 1.6E-19 67.2 6.7 77 2-85 5-83 (91)
36 3m45_A Cell adhesion molecule 99.6 6.6E-14 2.3E-18 64.8 10.7 88 3-95 8-102 (108)
37 2j8h_A Titin, connectin; cardi 99.6 9.1E-14 3.1E-18 70.2 11.9 90 1-94 4-93 (197)
38 2cry_A KIN of IRRE-like protei 99.6 1.4E-15 4.7E-20 72.1 4.7 93 1-95 14-109 (122)
39 1gl4_B Basement membrane-speci 99.6 2.8E-14 9.7E-19 65.1 8.8 78 7-95 16-94 (98)
40 2yd1_A Tyrosine-protein phosph 99.6 2.3E-13 8E-18 69.6 12.9 89 1-93 6-96 (212)
41 2dav_A SLOW MYBP-C, myosin-bin 99.6 7.8E-14 2.7E-18 66.4 10.2 92 4-95 10-107 (126)
42 3mtr_A N-CAM-1, NCAM-1, neural 99.6 1.1E-13 3.7E-18 71.0 11.4 88 2-95 20-108 (215)
43 2k1m_A Myosin-binding protein 99.6 9.5E-14 3.3E-18 63.1 10.0 73 3-82 10-82 (95)
44 2edf_A Obscurin; beta-sandwich 99.6 5.5E-14 1.9E-18 64.7 9.3 77 1-84 8-84 (103)
45 2lu7_A Obscurin-like protein 1 99.6 2.1E-14 7.1E-19 64.1 7.4 71 9-86 4-74 (84)
46 2e6p_A Obscurin-like protein 1 99.6 3.4E-14 1.2E-18 65.5 8.4 73 11-90 20-92 (104)
47 2wv3_A Neuroplastin; igcam, me 99.6 5.9E-13 2E-17 67.0 13.6 89 2-95 93-186 (190)
48 3rbg_A Cytotoxic and regulator 99.6 1.2E-13 4.2E-18 65.6 10.5 85 6-95 6-97 (124)
49 2yuv_A Myosin-binding protein 99.6 1.6E-13 5.5E-18 62.9 10.3 74 2-82 8-82 (100)
50 3lcy_A Titin; A-BAND, IG tande 99.6 2.4E-13 8.1E-18 68.5 11.6 88 1-94 7-94 (197)
51 2nzi_A Titin; IG-domain, FNIII 99.6 2.2E-13 7.5E-18 72.8 12.0 90 1-94 4-93 (305)
52 2cr3_A Basic fibroblast growth 99.6 2.1E-14 7.1E-19 65.8 7.0 78 7-95 9-86 (99)
53 2r15_A Myomesin-1; sarcomeric 99.6 3.4E-13 1.2E-17 68.7 12.1 84 7-95 123-206 (212)
54 2edn_A Myosin-binding protein 99.6 9.3E-14 3.2E-18 65.5 8.8 90 6-95 17-112 (118)
55 3s35_X Vascular endothelial gr 99.6 8.2E-13 2.8E-17 62.4 12.3 87 7-95 14-106 (122)
56 2a38_A Titin; Z1Z2, structural 99.6 1.3E-13 4.5E-18 69.4 10.0 87 3-95 105-191 (194)
57 3so5_A LIG-3, leucine-rich rep 99.6 3.3E-13 1.1E-17 62.6 10.6 87 1-88 10-101 (112)
58 1pd6_A Cardiac MYBP-C;, myosin 99.6 8E-14 2.8E-18 64.5 8.3 70 9-84 24-93 (104)
59 4hwu_A Fibroblast growth facto 99.6 8.9E-14 3E-18 63.2 8.1 77 7-95 7-83 (95)
60 4fa8_A Secreted protein BARF1; 99.6 4.3E-14 1.5E-18 72.3 7.8 84 4-92 109-195 (203)
61 2a38_A Titin; Z1Z2, structural 99.6 2.5E-13 8.6E-18 68.4 10.5 89 1-94 5-94 (194)
62 2edh_A Obscurin; structural ge 99.6 6.7E-13 2.3E-17 62.0 11.3 73 2-82 20-92 (113)
63 3b5h_A Cervical EMMPRIN, HAB18 99.5 5.9E-13 2E-17 66.7 11.6 89 2-95 84-179 (184)
64 3kld_A Contactin 4, axcam, BIG 99.5 7.2E-14 2.5E-18 77.0 8.9 83 3-95 297-379 (384)
65 2yd6_A PTPRD protein; hydrolas 99.5 2.6E-13 8.9E-18 69.4 10.4 89 1-94 6-95 (212)
66 2rik_A Titin; I-SET IG fold, p 99.5 2.4E-13 8.3E-18 72.0 10.6 86 4-95 195-280 (284)
67 2rik_A Titin; I-SET IG fold, p 99.5 6.1E-13 2.1E-17 70.5 12.1 88 1-94 5-92 (284)
68 1x44_A Myosin-binding protein 99.5 1.1E-13 3.9E-18 63.7 8.1 74 4-84 10-85 (103)
69 2eny_A Obscurin; beta-sandwich 99.5 3.8E-14 1.3E-18 65.6 6.4 76 3-84 10-86 (104)
70 2edk_A Myosin-binding protein 99.5 2.6E-14 8.7E-19 65.7 5.9 79 1-85 8-89 (101)
71 1wwc_A Protein (NT-3 growth fa 99.5 5.6E-13 1.9E-17 62.7 10.5 77 17-95 21-97 (118)
72 2e7b_A Obscurin; IG-like domai 99.5 1.8E-13 6.1E-18 63.0 8.4 75 2-83 9-83 (103)
73 2v9t_A Roundabout homolog 1; s 99.5 1.4E-14 4.8E-19 68.1 4.8 89 1-90 9-99 (117)
74 3b43_A Titin; I-SET IG fold, e 99.5 4.1E-13 1.4E-17 77.3 11.4 87 1-93 5-91 (570)
75 3b43_A Titin; I-SET IG fold, e 99.5 3.9E-13 1.3E-17 77.4 11.2 89 2-95 478-566 (570)
76 3ejj_X Macrophage colony-stimu 99.5 2.2E-12 7.5E-17 68.5 13.4 90 2-95 187-277 (289)
77 3mjg_X Beta-type platelet-deri 99.5 7.6E-13 2.6E-17 70.3 11.4 86 9-95 189-274 (289)
78 2yd1_A Tyrosine-protein phosph 99.5 1.1E-13 3.9E-18 70.7 7.8 81 2-91 111-191 (212)
79 2ens_A Advanced glycosylation 99.5 6.5E-15 2.2E-19 67.1 2.9 72 2-88 11-82 (96)
80 2iep_A Muscle-specific kinase 99.5 1.2E-13 4.1E-18 69.5 7.3 80 2-88 8-87 (192)
81 2o26_X MAST/stem cell growth f 99.5 2.6E-12 9E-17 68.3 12.8 92 2-95 189-284 (290)
82 2dku_A KIAA1556 protein; beta- 99.5 3.1E-13 1.1E-17 62.2 8.1 73 2-81 9-81 (103)
83 2yd6_A PTPRD protein; hydrolas 99.5 1.2E-12 4.1E-17 66.9 11.0 84 2-90 109-194 (212)
84 2dm7_A KIAA1556 protein; beta- 99.5 9E-13 3.1E-17 61.1 9.1 76 1-84 8-83 (108)
85 2y23_A Myomesin; structural pr 99.5 1.4E-12 4.9E-17 69.7 10.9 77 11-95 231-308 (312)
86 2j8h_A Titin, connectin; cardi 99.5 8E-13 2.7E-17 66.7 9.4 80 10-95 113-193 (197)
87 1cs6_A Axonin-1; neural cell a 99.5 4.8E-13 1.6E-17 73.5 9.0 84 2-95 295-378 (382)
88 2jll_A NCAM2, neural cell adhe 99.5 3.8E-12 1.3E-16 70.0 12.4 89 1-95 1-95 (389)
89 2y25_A Myomesin; structural pr 99.5 1.6E-12 5.4E-17 69.7 10.7 83 8-95 229-311 (317)
90 2va4_A NCAM2, N-CAM 2, neural 99.5 6.9E-13 2.4E-17 66.6 8.5 85 1-93 2-88 (192)
91 2yd9_A Receptor-type tyrosine- 99.5 1.2E-12 4.2E-17 70.0 9.7 87 1-92 6-93 (304)
92 2c5d_C AXL oncogene, tyrosine- 99.5 3.3E-12 1.1E-16 64.4 10.6 88 1-88 2-93 (195)
93 1bih_A Hemolin; insect immunit 99.5 9.3E-13 3.2E-17 72.5 9.2 83 2-95 309-392 (395)
94 3s97_C Contactin-1; carbonic a 99.5 3.8E-13 1.3E-17 68.0 7.2 77 9-95 121-197 (201)
95 3p3y_A Neurofascin; IG domains 99.5 3.4E-13 1.2E-17 74.3 7.5 87 2-95 313-399 (404)
96 2v5t_A NCAM2, N-CAM 2, neural 99.5 5.3E-13 1.8E-17 66.9 7.5 77 11-95 108-184 (189)
97 1itb_B Type 1 interleukin-1 re 99.5 9.3E-12 3.2E-16 66.8 12.5 94 2-95 209-310 (315)
98 2cr6_A KIAA1556 protein, obscu 99.5 2.4E-13 8.1E-18 63.8 5.5 76 3-83 15-90 (115)
99 1jhl_L IGG1-kappa D11.15 FV (l 99.5 2.5E-12 8.6E-17 59.7 9.0 79 3-86 3-94 (108)
100 2v44_A NCAM2, neural cell adhe 99.5 1.7E-11 5.9E-16 61.5 12.6 80 4-89 5-84 (189)
101 1epf_A NCAM, protein (neural c 99.4 9.2E-12 3.1E-16 62.6 11.6 82 2-87 3-86 (191)
102 3zyj_A Leucine-rich repeat-con 99.4 6.6E-13 2.3E-17 74.5 8.0 85 2-95 342-429 (440)
103 2v44_A NCAM2, neural cell adhe 99.4 9.3E-13 3.2E-17 66.1 7.8 80 4-91 99-179 (189)
104 2wim_A N-CAM 2, NCAM2, neural 99.4 2.8E-13 9.4E-18 72.0 6.1 77 11-95 204-280 (291)
105 2wv3_A Neuroplastin; igcam, me 99.4 4.6E-12 1.6E-16 63.7 10.3 82 1-94 3-86 (190)
106 2cpc_A KIAA0657 protein; immun 99.4 4.5E-12 1.5E-16 59.1 9.5 67 11-84 23-89 (113)
107 3uto_A Twitchin; kinase, muscl 99.4 7.6E-12 2.6E-16 72.5 12.1 88 2-95 483-570 (573)
108 2e6q_A Obscurin-like protein 1 99.4 8.9E-12 3E-16 58.3 10.0 75 2-84 9-93 (112)
109 2v5m_A Dscam; neurobiology SPL 99.4 2.3E-12 8E-17 70.8 9.3 75 5-95 311-385 (388)
110 1qz1_A Neural cell adhesion mo 99.4 1.3E-12 4.4E-17 69.4 8.1 79 10-95 205-286 (291)
111 3khq_A B-cell antigen receptor 99.4 6.1E-12 2.1E-16 60.5 9.3 77 4-87 20-101 (133)
112 1z9m_A GAPA225; nectin-like, I 99.4 2.1E-11 7.2E-16 59.3 11.2 84 7-95 44-134 (145)
113 2q20_A VK1 O18/O8 germline lig 99.4 6.7E-12 2.3E-16 58.3 9.1 78 3-85 5-95 (109)
114 3bp6_B Programmed cell death 1 99.4 5.5E-12 1.9E-16 64.0 9.4 89 4-94 5-98 (202)
115 1epf_A NCAM, protein (neural c 99.4 8.7E-13 3E-17 66.3 6.4 81 2-90 101-182 (191)
116 2e27_L Anti-ciguatoxin antibod 99.4 5.8E-12 2E-16 59.5 8.7 78 3-85 5-95 (119)
117 2ywz_A NEW antigen receptor va 99.4 2E-11 6.9E-16 56.9 10.4 79 3-84 2-87 (111)
118 3laf_A Deleted in colorectal c 99.4 1.1E-12 3.8E-17 72.4 7.0 85 2-95 313-397 (403)
119 2x1w_L Vascular endothelial gr 99.4 4.2E-11 1.5E-15 61.4 12.3 87 8-95 112-203 (213)
120 4fqp_A Poliovirus receptor; im 99.4 2.7E-12 9.1E-17 69.0 8.0 73 11-95 227-300 (313)
121 2wim_A N-CAM 2, NCAM2, neural 99.4 3E-11 1E-15 64.1 12.0 83 1-89 4-86 (291)
122 2y25_A Myomesin; structural pr 99.4 6.5E-12 2.2E-16 67.3 9.4 85 1-94 7-92 (317)
123 3lcy_A Titin; A-BAND, IG tande 99.4 1.6E-11 5.4E-16 61.8 10.4 81 9-95 111-192 (197)
124 2va4_A NCAM2, N-CAM 2, neural 99.4 3.5E-11 1.2E-15 60.4 11.6 80 11-95 104-189 (192)
125 3grw_A Fibroblast growth facto 99.4 4.1E-11 1.4E-15 62.1 12.1 88 8-95 121-214 (241)
126 3ojm_B Fibroblast growth facto 99.4 9.7E-13 3.3E-17 67.7 5.7 78 9-94 27-107 (231)
127 1rhf_A Tyrosine-protein kinase 99.4 1.5E-11 5.2E-16 61.4 9.8 83 2-88 3-85 (182)
128 2v9r_A Roundabout homolog 1; p 99.4 1.8E-12 6.3E-17 66.0 6.2 73 9-90 119-192 (212)
129 2yd9_A Receptor-type tyrosine- 99.4 9.9E-12 3.4E-16 66.5 9.3 81 3-95 207-287 (304)
130 3moq_A NEW antigen receptor va 99.4 4.6E-11 1.6E-15 57.0 10.6 82 2-86 1-89 (126)
131 1i8k_A Epidermal growth factor 99.4 1.4E-11 4.7E-16 57.1 8.6 78 3-85 3-93 (107)
132 3nl4_L Antigen binding fragmen 99.4 2.4E-11 8.3E-16 62.0 10.3 81 2-87 2-95 (213)
133 1qz1_A Neural cell adhesion mo 99.4 4.6E-11 1.6E-15 63.4 11.6 84 1-88 2-87 (291)
134 1f97_A Junction adhesion molec 99.4 1.3E-11 4.4E-16 62.8 9.2 78 1-87 1-89 (212)
135 4frw_A Poliovirus receptor-rel 99.4 1.1E-11 3.8E-16 63.0 8.8 79 9-92 126-204 (218)
136 3k0w_A Mucosa-associated lymph 99.4 3.7E-12 1.3E-16 65.5 7.0 72 2-88 119-190 (218)
137 2eo1_A OBSCN protein, cDNA FLJ 99.4 8.1E-12 2.8E-16 57.3 7.5 69 10-85 20-88 (102)
138 2id5_A Lingo-1, leucine rich r 99.4 1E-12 3.6E-17 74.2 5.3 80 8-95 392-473 (477)
139 1mqk_L Antibody 7E2 FV fragmen 99.4 1.6E-11 5.5E-16 58.0 8.6 77 4-85 4-93 (120)
140 2c5d_C AXL oncogene, tyrosine- 99.4 1.2E-11 4.2E-16 62.3 8.8 76 2-90 107-183 (195)
141 3mj8_L Stimulatory hamster ant 99.4 1.8E-11 6.1E-16 62.5 9.4 80 2-87 2-94 (213)
142 3qs7_E FL cytokine receptor; i 99.4 1.9E-11 6.6E-16 68.5 10.1 81 8-95 55-135 (423)
143 2jll_A NCAM2, neural cell adhe 99.4 2.2E-11 7.5E-16 67.0 10.1 87 3-94 102-189 (389)
144 2vr9_A Roundabout 1, ROBO; imm 99.4 1.7E-12 5.8E-17 66.4 5.2 77 8-92 115-199 (217)
145 2v5t_A NCAM2, N-CAM 2, neural 99.4 7.1E-12 2.4E-16 62.8 7.4 80 1-88 2-82 (189)
146 1i3g_L Antibody FV fragment; a 99.3 5.6E-11 1.9E-15 55.4 9.8 78 3-85 6-96 (111)
147 3kld_A Contactin 4, axcam, BIG 99.3 5.4E-12 1.8E-16 69.6 7.3 77 9-94 213-289 (384)
148 3p2t_A Leukocyte immunoglobuli 99.3 2.2E-12 7.5E-17 65.3 5.4 78 1-87 5-82 (196)
149 2coq_A NEW antigen receptor va 99.3 5.3E-11 1.8E-15 55.2 9.6 79 3-84 2-87 (108)
150 3oq3_B IFN-alpha/beta binding 99.3 1.8E-10 6.1E-15 62.4 13.1 88 7-95 234-326 (329)
151 3grw_A Fibroblast growth facto 99.3 4.7E-12 1.6E-16 65.7 6.5 79 9-94 23-103 (241)
152 4fa8_A Secreted protein BARF1; 99.3 1.8E-11 6.3E-16 62.6 8.6 81 10-95 2-101 (203)
153 1qfw_M FV, antibody (anti beta 99.3 1.2E-11 4E-16 57.4 7.1 77 4-85 4-93 (108)
154 2xot_A Amphoterin-induced prot 99.3 8.8E-12 3E-16 68.5 7.7 78 8-95 253-333 (361)
155 3r4d_A CEA-related cell adhesi 99.3 1E-11 3.6E-16 63.1 7.5 69 13-90 122-190 (208)
156 2ifg_A High affinity nerve gro 99.3 2.2E-11 7.4E-16 66.5 9.1 82 13-95 258-341 (347)
157 4i0k_A CD276 antigen; immunogl 99.3 6.2E-11 2.1E-15 60.8 10.4 81 12-95 121-202 (222)
158 2iep_A Muscle-specific kinase 99.3 2E-12 6.9E-17 65.0 4.6 78 3-89 102-179 (192)
159 4ffy_L DENV1-E111 single chain 99.3 3.2E-11 1.1E-15 57.4 8.4 80 2-86 2-98 (126)
160 4f80_A Butyrophilin subfamily 99.3 8.7E-11 3E-15 60.6 10.7 88 4-93 7-113 (226)
161 1pko_A Myelin oligodendrocyte 99.3 1.9E-10 6.5E-15 55.4 11.3 90 4-95 9-117 (139)
162 1rhf_A Tyrosine-protein kinase 99.3 4.2E-11 1.5E-15 59.7 9.2 74 2-90 99-173 (182)
163 1j05_L T84.66 antibody, anti-C 99.3 4.3E-11 1.5E-15 55.7 8.7 78 3-85 3-97 (111)
164 3dmk_A DOWN syndrome cell adhe 99.3 1.8E-10 6.2E-15 68.6 13.2 93 2-95 430-522 (816)
165 1vca_A VCAM-D1,2, human vascul 99.3 3E-11 1E-15 61.6 8.8 79 7-94 7-85 (202)
166 3zyi_A Leucine-rich repeat-con 99.3 2.5E-12 8.4E-17 72.4 5.0 84 2-95 353-439 (452)
167 3umt_A SCFV heavy chain and li 99.3 5.4E-11 1.8E-15 62.5 9.8 79 3-86 140-231 (256)
168 3r06_A Anti-mouse CD3epsilon a 99.3 4.8E-11 1.6E-15 60.9 9.3 81 2-87 2-95 (213)
169 2vr9_A Roundabout 1, ROBO; imm 99.3 9.2E-12 3.1E-16 63.7 6.7 86 1-89 9-95 (217)
170 1fnl_A Low affinity immunoglob 99.3 2.2E-11 7.6E-16 60.7 7.8 73 1-89 7-80 (175)
171 1h5b_A Murine T cell receptor 99.3 1.5E-10 5.1E-15 54.1 10.0 81 4-87 4-95 (113)
172 2ec8_A MAST/stem cell growth f 99.3 1E-10 3.5E-15 66.7 11.1 85 10-95 322-407 (524)
173 2yc1_B Single chain antibody f 99.3 1.2E-10 4.3E-15 56.8 9.9 78 3-85 18-108 (146)
174 3mj8_L Stimulatory hamster ant 99.3 5.3E-12 1.8E-16 64.5 5.3 79 14-93 127-207 (213)
175 4gos_A V-SET domain-containing 99.3 1.5E-11 5.1E-16 58.6 6.4 88 6-95 10-116 (125)
176 2ec8_A MAST/stem cell growth f 99.3 2.4E-10 8E-15 65.3 12.3 92 2-95 212-305 (524)
177 1sq2_N Novel antigen receptor; 99.3 1.1E-10 3.7E-15 54.6 9.2 78 4-84 3-87 (113)
178 3p2t_A Leukocyte immunoglobuli 99.3 8E-11 2.7E-15 59.6 9.3 70 12-87 110-179 (196)
179 1gsm_A Madcam-1, mucosal addre 99.3 1.6E-10 5.4E-15 59.5 10.4 74 9-94 15-90 (210)
180 3jz7_A MCAR, CAR, coxsackievir 99.3 2.6E-12 8.8E-17 65.4 3.8 76 12-95 132-208 (214)
181 4dkd_C Macrophage colony-stimu 99.3 3.1E-10 1E-14 60.3 11.8 90 2-95 187-277 (292)
182 2ny1_B T-cell surface glycopro 99.3 4.9E-11 1.7E-15 59.7 8.3 69 11-95 107-175 (184)
183 1uct_A Immunoglobulin alpha FC 99.3 2.5E-11 8.4E-16 62.7 7.2 78 1-87 9-88 (218)
184 3u83_A Poliovirus receptor-rel 99.3 4.9E-11 1.7E-15 64.4 8.7 74 10-95 241-316 (331)
185 1bih_A Hemolin; insect immunit 99.3 5.9E-12 2E-16 69.3 5.1 82 1-89 6-88 (395)
186 3s96_B 3B5H10 FAB light chain; 99.3 5E-11 1.7E-15 61.0 8.3 80 2-87 2-99 (218)
187 3ojm_B Fibroblast growth facto 99.3 2.9E-11 1E-15 62.2 7.4 87 9-95 126-217 (231)
188 1eeq_A Kappa-4 immunoglobulin 99.3 9E-11 3.1E-15 54.9 8.5 78 3-85 3-99 (114)
189 2vsd_A CHIR AB1; immune system 99.3 1.9E-11 6.5E-16 56.5 6.1 74 1-85 5-78 (105)
190 1e07_A Carcinoembryonic antige 99.3 4.5E-11 1.5E-15 69.6 8.8 71 8-95 566-636 (642)
191 3d9a_L Light chain of hyhel10 99.3 8.4E-11 2.9E-15 60.0 8.9 80 4-88 4-96 (213)
192 2nzi_A Titin; IG-domain, FNIII 99.3 2.8E-10 9.5E-15 60.8 11.2 80 10-95 113-193 (305)
193 3sgj_C Human FCG3A receptor; r 99.3 4.4E-11 1.5E-15 61.1 7.8 71 2-88 8-79 (204)
194 3v2a_R Vascular endothelial gr 99.3 3.7E-13 1.3E-17 79.3 0.0 86 2-95 667-752 (772)
195 2ghw_B Anti-SARS SCFV antibody 99.3 2E-10 6.8E-15 59.9 10.3 77 5-86 139-228 (247)
196 3dmk_A DOWN syndrome cell adhe 99.3 3.1E-11 1.1E-15 71.8 8.0 85 2-95 715-805 (816)
197 2d3v_A Leukocyte immunoglobuli 99.3 8.4E-12 2.9E-16 63.2 4.8 78 1-87 5-82 (196)
198 1ugn_A LIR1, leukocyte immunog 99.3 8.9E-11 3E-15 59.5 8.5 72 11-87 110-181 (198)
199 3rbs_A Myomesin-1; immunoglobu 99.3 1.2E-10 4.1E-15 59.7 9.0 72 10-85 11-83 (207)
200 3k0w_A Mucosa-associated lymph 99.3 1.7E-11 5.7E-16 63.0 5.9 72 2-88 19-90 (218)
201 3o4o_C Interleukin-1 receptor 99.3 6E-12 2.1E-16 68.2 4.3 87 2-95 19-113 (339)
202 2wng_A Tyrosine-protein phosph 99.3 9.8E-11 3.4E-15 63.3 8.9 77 13-90 232-310 (327)
203 1dlf_L Anti-dansyl immunoglobu 99.3 2.2E-10 7.6E-15 53.5 8.9 78 3-85 3-98 (113)
204 2fbo_J V1V2;, variable region- 99.3 2.5E-11 8.5E-16 63.2 6.2 87 9-95 144-248 (250)
205 3qs9_E FL cytokine receptor; i 99.3 4.8E-11 1.6E-15 68.5 7.8 76 10-95 335-410 (527)
206 3uzq_A Anti-dengue MAB 4E11; d 99.2 1.3E-10 4.4E-15 60.9 8.8 79 3-86 135-230 (253)
207 1xau_A B- and T-lymphocyte att 99.2 3.9E-10 1.3E-14 52.1 9.1 80 9-90 22-106 (122)
208 3esu_F Antibody 14B7* light ch 99.2 2.8E-10 9.6E-15 59.4 9.9 80 3-87 6-98 (250)
209 3sbw_C Programmed cell death 1 99.2 4.1E-10 1.4E-14 57.7 10.4 81 12-95 127-207 (222)
210 3rjd_A High affinity immunoglo 99.2 1.1E-10 3.7E-15 61.1 8.3 74 1-90 1-75 (262)
211 2p1y_A Bispecific alpha/beta T 99.2 2.6E-10 9E-15 59.1 9.7 78 5-85 131-221 (238)
212 3juy_B 3B3 single chain varian 99.2 3.9E-10 1.3E-14 59.2 10.4 80 3-87 151-244 (256)
213 3laf_A Deleted in colorectal c 99.2 5.6E-11 1.9E-15 65.6 7.5 81 7-95 227-307 (403)
214 1eaj_A Coxsackie virus and ade 99.2 2.5E-11 8.4E-16 57.3 5.4 90 4-95 8-121 (126)
215 3oq3_B IFN-alpha/beta binding 99.2 2.6E-11 8.9E-16 65.7 6.0 65 12-85 139-204 (329)
216 4f80_A Butyrophilin subfamily 99.2 6.9E-11 2.3E-15 61.0 7.3 82 10-95 127-209 (226)
217 1nbq_A JAM, junctional adhesio 99.2 3.4E-11 1.2E-15 61.1 6.1 77 2-87 5-92 (209)
218 3auv_A SC-DSFV derived from th 99.2 3.9E-10 1.3E-14 59.9 10.3 80 3-87 14-106 (276)
219 1q0x_L FAB 9B1, light chain; a 99.2 4.7E-11 1.6E-15 61.0 6.6 79 14-93 128-209 (212)
220 2i24_N NEW antigen receptor PB 99.2 7.1E-10 2.4E-14 52.5 10.1 78 4-84 3-87 (121)
221 3sob_L Antibody light chain; b 99.2 2.5E-10 8.5E-15 59.1 9.3 79 4-87 27-118 (237)
222 4hwn_A FC receptor-like A; FCR 99.2 2.4E-10 8.1E-15 53.1 8.4 72 1-87 8-84 (108)
223 2r15_A Myomesin-1; sarcomeric 99.2 2.4E-10 8.3E-15 58.1 9.2 76 14-95 15-91 (212)
224 3tv3_L PGT128 light chain, IG 99.2 1.2E-10 4.2E-15 59.4 7.8 77 3-87 3-92 (211)
225 2ifg_A High affinity nerve gro 99.2 1.7E-11 5.9E-16 66.9 4.9 85 1-93 158-243 (347)
226 2gi7_A GPVI protein; IG-like d 99.2 5E-11 1.7E-15 59.9 6.2 69 1-87 8-76 (184)
227 2jju_A Signal regulatory prote 99.2 9E-11 3.1E-15 55.9 6.8 82 4-85 6-96 (127)
228 1oll_A NK receptor; immune sys 99.2 7.2E-11 2.5E-15 59.5 6.8 77 1-86 4-80 (188)
229 2znx_A SCFV; fluorotryptohpan, 99.2 2.6E-10 8.8E-15 59.5 9.1 80 3-87 3-95 (242)
230 2c1o_A IGK-C protein; FAB frag 99.2 2.2E-10 7.6E-15 60.0 8.8 81 2-87 39-137 (254)
231 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.2 5.4E-10 1.8E-14 58.7 10.2 83 2-87 4-100 (256)
232 1nqb_A Single-chain antibody f 99.2 6.9E-10 2.4E-14 58.4 10.6 77 4-85 124-218 (256)
233 3tv3_L PGT128 light chain, IG 99.2 1.5E-11 5.1E-16 62.8 4.2 79 15-93 125-205 (211)
234 4dzb_B Vbeta2 (MAIT T cell rec 99.2 4E-10 1.4E-14 58.7 9.6 80 2-85 2-99 (246)
235 1f97_A Junction adhesion molec 99.2 1.6E-11 5.4E-16 62.5 4.2 72 11-89 114-195 (212)
236 3u6r_L Antibody 1:7 (light cha 99.2 9.3E-10 3.2E-14 53.5 10.1 78 3-85 2-92 (143)
237 1zox_A CLM-1; IG-superfamily, 99.2 2.2E-09 7.6E-14 50.0 11.1 84 8-94 8-105 (113)
238 2v9r_A Roundabout homolog 1; p 99.2 2.6E-11 8.9E-16 61.7 4.8 87 1-89 9-98 (212)
239 3omz_A Human vdelta1 gamma del 99.2 1.3E-10 4.4E-15 61.1 7.5 84 1-87 2-103 (259)
240 1lk3_L 9D7 light chain; antige 99.2 3.8E-10 1.3E-14 57.6 9.0 79 4-88 4-95 (210)
241 3qs7_E FL cytokine receptor; i 99.2 9.9E-10 3.4E-14 61.7 11.4 76 9-85 235-312 (423)
242 1f2q_A High affinity immunoglo 99.2 3.3E-11 1.1E-15 60.0 5.0 74 1-90 4-78 (176)
243 3q0h_A T cell immunoreceptor w 99.2 3.3E-10 1.1E-14 53.3 8.1 80 8-95 10-104 (117)
244 1lk3_L 9D7 light chain; antige 99.2 3.5E-11 1.2E-15 61.4 5.1 75 14-88 124-201 (210)
245 1f3r_B FV antibody fragment; I 99.2 1.3E-10 4.4E-15 61.1 7.4 74 8-86 146-232 (257)
246 1svz_A Immunoglobulin;, single 99.2 4.6E-10 1.6E-14 58.6 9.4 80 3-87 3-100 (247)
247 1moe_A Anti-CEA MAB T84.66; an 99.2 3.3E-10 1.1E-14 58.8 8.8 80 3-87 3-99 (240)
248 1pew_A JTO2, A lambda-6 type i 99.2 1E-09 3.5E-14 50.9 9.6 78 4-85 4-94 (109)
249 3d9a_L Light chain of hyhel10 99.2 2.4E-11 8.1E-16 62.1 4.3 75 14-88 125-202 (213)
250 3gkz_A Anti-methamphetamine si 99.2 6.1E-10 2.1E-14 58.5 9.8 79 3-86 143-235 (257)
251 1tvd_A T cell receptor, ES204 99.2 8.6E-10 2.9E-14 51.7 9.4 79 4-85 3-98 (116)
252 2rcj_C Light chain; immunoglob 99.2 2.3E-10 7.8E-15 65.3 8.6 80 10-90 123-205 (523)
253 1oaq_L Light chain; antibody, 99.2 4.9E-10 1.7E-14 52.8 8.5 77 3-85 3-95 (120)
254 1nkr_A P58-CL42 KIR; inhibitor 99.2 4E-10 1.4E-14 57.3 8.7 77 2-85 9-85 (201)
255 1qok_A MFE-23 recombinant anti 99.2 1E-09 3.6E-14 58.4 10.5 75 5-85 166-253 (282)
256 3sgj_C Human FCG3A receptor; r 99.2 1.5E-10 5.1E-15 59.1 7.0 63 11-87 98-161 (204)
257 3nfj_J T cell receptor beta ch 99.2 1E-09 3.5E-14 57.2 10.3 78 3-84 3-95 (245)
258 3ry4_A Low affinity immunoglob 99.2 2.6E-10 9E-15 56.3 7.7 64 11-88 95-159 (170)
259 1q0x_L FAB 9B1, light chain; a 99.2 6.9E-10 2.4E-14 56.6 9.4 78 4-87 4-97 (212)
260 4fom_A Poliovirus receptor-rel 99.2 2.1E-11 7.1E-16 65.3 3.8 74 11-95 222-296 (308)
261 3bkj_L WO2 IGG2A FAB fragment 99.2 5.1E-10 1.7E-14 58.7 8.9 79 4-87 37-133 (252)
262 4dep_C Interleukin-1 receptor 99.2 1.3E-11 4.4E-16 67.2 3.0 84 12-95 237-329 (349)
263 1p4b_L Antibody variable light 99.2 1.1E-09 3.7E-14 52.8 9.4 77 3-85 8-100 (135)
264 1cs6_A Axonin-1; neural cell a 99.2 6.9E-11 2.4E-15 65.0 5.8 80 1-89 4-88 (382)
265 3bp6_B Programmed cell death 1 99.2 8.8E-10 3E-14 55.9 9.5 76 12-95 114-189 (202)
266 2y23_A Myomesin; structural pr 99.2 1.5E-09 5.2E-14 58.1 10.7 76 10-89 116-192 (312)
267 1q9r_B S25-2 FAB (IGG1K) heavy 99.2 8.3E-10 2.8E-14 56.8 9.3 76 13-92 139-216 (222)
268 3kg5_A B-cell antigen receptor 99.2 1.2E-09 4E-14 52.6 9.1 75 5-85 22-102 (134)
269 3p3y_A Neurofascin; IG domains 99.2 8.2E-11 2.8E-15 64.9 5.8 76 11-95 232-307 (404)
270 3udw_C Poliovirus receptor; PV 99.2 2.5E-10 8.4E-15 53.3 6.6 88 5-95 5-112 (118)
271 2ocw_A Polymeric-immunoglobuli 99.2 1.2E-09 4E-14 63.1 10.6 81 8-90 449-536 (585)
272 2d3v_A Leukocyte immunoglobuli 99.2 6.1E-11 2.1E-15 60.0 4.8 72 11-87 109-180 (196)
273 2otu_A FV light chain variable 99.2 2.9E-09 9.8E-14 49.8 10.0 77 4-86 5-99 (115)
274 2gjj_A A21 single-chain antibo 99.2 7.9E-10 2.7E-14 58.5 9.0 81 2-87 6-105 (264)
275 3qs9_E FL cytokine receptor; i 99.2 1.2E-09 4.2E-14 62.8 10.3 78 7-85 233-312 (527)
276 3s96_B 3B5H10 FAB light chain; 99.1 8.8E-11 3E-15 60.1 5.2 79 14-93 134-214 (218)
277 1fo0_A Protein (BM3.3 T cell r 99.1 1.2E-09 4.2E-14 51.2 8.7 78 4-84 3-95 (116)
278 1fo0_B Protein (BM3.3 T cell r 99.1 1.2E-09 3.9E-14 51.0 8.6 77 3-85 3-96 (112)
279 1ry7_B FGFR-3, fibroblast grow 99.1 6.8E-11 2.3E-15 63.9 4.9 87 9-95 230-323 (334)
280 2rgs_A I, IG gamma-2B heavy ch 99.1 2.2E-10 7.7E-15 59.0 6.6 75 13-88 23-101 (218)
281 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.1 1.1E-09 3.6E-14 57.6 9.3 81 3-88 139-235 (256)
282 1nez_G T-cell surface glycopro 99.1 3.3E-09 1.1E-13 50.7 10.2 78 2-84 5-106 (128)
283 3t0v_A Immunoglobulin variable 99.1 1E-09 3.4E-14 52.1 8.3 79 2-86 2-95 (123)
284 3sbw_C Programmed cell death 1 99.1 1.1E-09 3.7E-14 56.2 9.0 86 5-93 5-109 (222)
285 1fnl_A Low affinity immunoglob 99.1 5.1E-10 1.7E-14 55.7 7.6 64 11-88 98-162 (175)
286 1hng_A CD2; T lymphocyte adhes 99.1 1.6E-10 5.5E-15 57.8 5.7 72 10-89 5-87 (176)
287 3rrq_A Protein PD-1, programme 99.1 9.7E-10 3.3E-14 52.5 8.1 81 5-88 5-100 (129)
288 2q87_A CMRF35-H antigen; all-b 99.1 2.6E-09 8.8E-14 49.6 9.4 75 9-86 4-91 (110)
289 2oyp_A Hepatitis A virus cellu 99.1 6.3E-10 2.2E-14 51.3 7.2 81 10-93 3-102 (109)
290 1nbq_A JAM, junctional adhesio 99.1 1.1E-11 3.7E-16 62.9 1.2 73 11-90 117-198 (209)
291 2v5m_A Dscam; neurobiology SPL 99.1 9.4E-11 3.2E-15 64.5 5.0 80 1-88 3-90 (388)
292 2d9c_A Signal-regulatory prote 99.1 2.1E-10 7.1E-15 55.2 5.7 84 3-86 10-102 (136)
293 1hxm_B Gamma-delta T-cell rece 99.1 2.4E-09 8.1E-14 55.9 10.1 82 1-85 1-102 (242)
294 2gki_A Nuclease; anti-DNA anti 99.1 9.9E-10 3.4E-14 58.8 8.7 76 5-85 163-257 (291)
295 2yz1_A Tyrosine-protein phosph 99.1 3.4E-10 1.1E-14 53.3 6.2 84 3-86 9-101 (120)
296 1xt5_A Variable region-contain 99.1 7.9E-10 2.7E-14 52.9 7.6 83 4-86 7-115 (135)
297 2pet_A Lutheran blood group gl 99.1 1.4E-09 4.7E-14 56.0 8.9 82 4-85 121-211 (231)
298 1nfd_E H57 FAB; complex (immun 99.1 4.6E-10 1.6E-14 57.3 7.1 75 4-84 3-90 (212)
299 3nl4_L Antigen binding fragmen 99.1 1E-10 3.6E-15 59.7 4.6 71 13-83 126-198 (213)
300 2xzc_L FAB A.17 light chain; i 99.1 1.7E-10 5.8E-15 59.1 5.4 73 15-88 128-204 (216)
301 1nfd_E H57 FAB; complex (immun 99.1 4.9E-12 1.7E-16 64.6 -0.3 75 14-89 126-202 (212)
302 1x9q_A SCFV, 4M5.3 anti-fluore 99.1 1.3E-09 4.5E-14 57.6 8.9 80 3-87 17-114 (268)
303 4ei6_B Vbeta16 XV19 type II na 99.1 2.6E-09 8.9E-14 55.6 9.9 78 2-84 3-97 (245)
304 1pz5_B Heavy chain of FAB (SYA 99.1 8.5E-10 2.9E-14 56.7 7.9 78 13-95 137-217 (220)
305 1ncn_A T lymphocyte activation 99.1 4.2E-10 1.5E-14 52.2 6.2 75 10-91 3-97 (110)
306 1oll_A NK receptor; immune sys 99.1 5.7E-10 1.9E-14 56.2 7.1 64 11-85 108-171 (188)
307 2fbj_H IGA-kappa J539 FAB (hea 99.1 3.2E-09 1.1E-13 54.7 10.0 77 13-91 134-213 (220)
308 2c1o_A IGK-C protein; FAB frag 99.1 1.2E-10 4E-15 61.0 4.6 74 15-88 168-244 (254)
309 2or8_A Hepatitis A virus cellu 99.1 1E-09 3.6E-14 51.2 7.5 78 7-87 3-97 (116)
310 3s97_C Contactin-1; carbonic a 99.1 9E-11 3.1E-15 59.2 4.0 76 7-89 14-92 (201)
311 1uct_A Immunoglobulin alpha FC 99.1 3.8E-10 1.3E-14 58.2 6.3 65 11-85 115-179 (218)
312 1hng_A CD2; T lymphocyte adhes 99.1 1.8E-10 6.2E-15 57.6 5.0 63 16-95 110-172 (176)
313 2p1y_A Bispecific alpha/beta T 99.1 1.5E-09 5E-14 56.3 8.6 80 3-87 2-97 (238)
314 2fbo_J V1V2;, variable region- 99.1 7E-10 2.4E-14 57.7 7.4 85 4-88 5-115 (250)
315 1f2q_A High affinity immunoglo 99.1 5.5E-10 1.9E-14 55.6 6.7 63 11-87 95-158 (176)
316 3bqu_C 3H6 FAB light chain; be 99.1 1.6E-10 5.6E-15 59.7 4.8 79 4-87 26-117 (233)
317 1ugn_A LIR1, leukocyte immunog 99.1 2.6E-11 9E-16 61.4 1.8 77 1-86 5-81 (198)
318 2wng_A Tyrosine-protein phosph 99.1 3.6E-10 1.2E-14 61.1 6.3 86 3-88 5-99 (327)
319 1wio_A CD4, T-cell surface gly 99.1 8.4E-10 2.9E-14 60.5 7.7 87 9-95 184-289 (363)
320 3o4o_C Interleukin-1 receptor 99.1 3E-11 1E-15 65.5 2.0 90 2-93 227-329 (339)
321 2z35_A T-cell receptor alpha-c 99.1 2.2E-09 7.4E-14 50.0 8.1 77 4-83 3-92 (112)
322 2gi7_A GPVI protein; IG-like d 99.1 3.5E-10 1.2E-14 56.8 5.7 66 11-87 103-168 (184)
323 3ry4_A Low affinity immunoglob 99.1 4.2E-10 1.5E-14 55.6 6.0 72 2-89 5-77 (170)
324 3jz7_A MCAR, CAR, coxsackievir 99.1 3.1E-10 1.1E-14 57.7 5.6 88 5-94 4-115 (214)
325 1jbj_A CD3 epsilon and gamma e 99.1 6.9E-11 2.3E-15 59.6 3.1 61 13-89 119-179 (186)
326 3ux9_B SCFV antibody; five hel 99.1 1E-08 3.5E-13 53.7 11.4 72 11-85 144-235 (256)
327 3d9a_H Heavy chain of hyhel10 99.1 9.3E-10 3.2E-14 56.2 7.3 76 13-92 130-207 (210)
328 3bp6_A Programmed cell death p 99.1 1.6E-08 5.6E-13 47.4 11.0 79 5-86 3-96 (117)
329 3juy_B 3B3 single chain varian 99.1 3.3E-09 1.1E-13 55.7 9.5 81 2-85 7-107 (256)
330 1c1e_H Catalytic antibody 1E9 99.1 1.2E-09 4.1E-14 56.1 7.7 77 13-93 136-214 (219)
331 2qhl_A Novel immune-type recep 99.1 1.1E-09 3.8E-14 51.0 6.9 74 7-85 5-98 (111)
332 3mjg_X Beta-type platelet-deri 99.1 1.9E-09 6.4E-14 57.3 8.6 76 2-88 1-76 (289)
333 3vh8_G Killer cell immunoglobu 99.1 2.1E-09 7.3E-14 57.9 8.9 70 13-88 130-199 (316)
334 1dr9_A B7-1 (CD80), T lymphocy 99.1 1.7E-08 5.7E-13 51.1 11.7 77 14-95 119-197 (201)
335 2wbj_D OB TCR; transmembrane, 99.1 2.6E-09 9E-14 56.8 9.0 79 3-85 26-122 (279)
336 2j6e_L IGM, FAB light chain; a 99.1 3.5E-11 1.2E-15 62.2 1.8 79 15-93 149-229 (234)
337 2if7_A SLAM family member 6; N 99.1 8.6E-10 2.9E-14 55.8 6.8 87 7-93 4-100 (193)
338 3sob_L Antibody light chain; b 99.1 2E-10 6.7E-15 59.4 4.5 74 15-88 149-225 (237)
339 2ghw_B Anti-SARS SCFV antibody 99.1 5.9E-09 2E-13 54.4 10.1 79 3-85 5-103 (247)
340 1sy6_A T-cell surface glycopro 99.1 5.3E-11 1.8E-15 60.8 2.3 65 15-88 127-192 (204)
341 3mj6_A Junctional adhesion mol 99.1 2.9E-10 9.8E-15 59.8 5.1 85 8-95 125-233 (268)
342 1nkr_A P58-CL42 KIR; inhibitor 99.1 2.9E-09 1E-13 54.1 8.6 66 12-85 118-183 (201)
343 3bj9_1 Immunoglobulin IOTA cha 99.1 1.7E-08 5.7E-13 47.2 10.6 77 5-85 3-99 (116)
344 1qok_A MFE-23 recombinant anti 99.1 6.8E-09 2.3E-13 55.3 10.3 77 8-87 33-129 (282)
345 1p6f_A NKP46, natural cytotoxi 99.1 9.1E-10 3.1E-14 57.7 6.8 76 1-85 7-82 (242)
346 3esu_F Antibody 14B7* light ch 99.1 5E-09 1.7E-13 54.7 9.6 73 9-84 139-231 (250)
347 4gjt_B Poliovirus receptor-rel 99.1 1.1E-09 3.8E-14 51.8 6.5 87 7-95 6-113 (123)
348 1u3h_A T-cell receptor alpha-c 98.6 1.5E-11 5.2E-16 57.2 0.0 78 5-85 3-93 (110)
349 1z7z_I Intercellular adhesion 99.1 1.7E-09 5.9E-14 60.6 8.2 71 8-87 93-166 (450)
350 1f3r_B FV antibody fragment; I 99.1 7.9E-09 2.7E-13 54.3 10.3 80 4-87 4-102 (257)
351 3r08_E T-cell surface glycopro 99.1 2.4E-11 8.1E-16 53.8 0.6 60 8-84 6-66 (82)
352 1jbj_A CD3 epsilon and gamma e 99.1 2.9E-10 1E-14 57.2 4.6 61 12-89 10-71 (186)
353 1ry7_B FGFR-3, fibroblast grow 99.1 1.3E-10 4.3E-15 62.9 3.5 79 11-94 133-211 (334)
354 2rcj_C Light chain; immunoglob 99.1 3.6E-09 1.2E-13 60.5 9.5 78 12-92 230-309 (523)
355 3pv7_A B7-H6, IG-like domain-c 99.1 7.6E-09 2.6E-13 54.0 10.1 76 13-88 130-213 (248)
356 1svz_A Immunoglobulin;, single 99.1 7.4E-09 2.5E-13 54.0 10.0 72 11-85 137-228 (247)
357 2qsq_A Carcinoembryonic antige 99.1 7.1E-10 2.4E-14 51.8 5.5 76 11-94 10-104 (111)
358 2hp4_A T-cell surface glycopro 99.1 8.8E-09 3E-13 48.2 9.2 77 4-85 3-99 (114)
359 1i1c_A IGG2A, IG gamma-2A chai 99.0 4.9E-10 1.7E-14 58.6 5.4 75 13-88 29-107 (239)
360 2zg1_A Sialic acid-binding IG- 99.0 8.6E-10 2.9E-14 56.3 6.2 71 13-95 135-211 (214)
361 1c1e_H Catalytic antibody 1E9 99.0 1.5E-08 5.2E-13 51.9 10.9 76 8-86 7-102 (219)
362 2ocw_A Polymeric-immunoglobuli 99.0 4.6E-09 1.6E-13 60.6 9.8 91 2-94 113-216 (585)
363 3pv7_A B7-H6, IG-like domain-c 99.0 1E-09 3.5E-14 57.3 6.5 89 6-94 8-113 (248)
364 3r0n_A Poliovirus receptor-rel 99.0 1.7E-09 5.8E-14 51.4 6.8 89 7-95 8-126 (128)
365 4dep_C Interleukin-1 receptor 99.0 1.7E-09 5.9E-14 58.9 7.5 80 8-94 14-110 (349)
366 2atp_B T-cell surface glycopro 99.0 7.4E-09 2.5E-13 48.4 8.8 77 6-85 3-101 (115)
367 3auv_A SC-DSFV derived from th 99.0 9.2E-09 3.1E-13 54.6 10.1 74 9-85 142-235 (276)
368 1u9k_A Triggering receptor exp 99.0 1E-08 3.5E-13 47.9 9.2 79 6-87 4-100 (114)
369 3r06_A Anti-mouse CD3epsilon a 99.0 5.1E-10 1.7E-14 57.1 5.1 75 13-87 124-201 (213)
370 3mj6_A Junctional adhesion mol 99.0 9.6E-10 3.3E-14 57.8 6.2 83 3-88 7-109 (268)
371 3gkz_A Anti-methamphetamine si 99.0 1.5E-08 5E-13 53.2 10.7 75 8-85 15-108 (257)
372 3dmm_D T-cell surface glycopro 99.0 6.9E-09 2.4E-13 50.8 8.8 81 2-85 2-104 (150)
373 2eys_A NKT15; natural killer T 99.0 1.9E-08 6.7E-13 51.8 10.8 80 3-85 5-97 (210)
374 3ux9_B SCFV antibody; five hel 99.0 5.2E-09 1.8E-13 54.9 8.7 74 9-87 10-98 (256)
375 3rjd_A High affinity immunoglo 99.0 2.9E-09 9.9E-14 55.7 7.8 68 10-91 91-159 (262)
376 2znx_A SCFV; fluorotryptohpan, 99.0 1.3E-08 4.5E-13 53.1 10.2 71 11-84 132-221 (242)
377 2xzc_L FAB A.17 light chain; i 99.0 4.9E-09 1.7E-13 53.7 8.4 75 8-87 7-96 (216)
378 1nqb_A Single-chain antibody f 99.0 9.2E-09 3.1E-13 54.2 9.6 77 8-87 7-103 (256)
379 2o26_X MAST/stem cell growth f 99.0 2.8E-09 9.5E-14 56.7 7.6 67 1-84 12-78 (290)
380 1dee_B IGM RF 2A2; FAB-IBP com 99.0 9E-09 3.1E-13 53.1 9.3 78 14-93 139-221 (223)
381 2oz4_A Intercellular adhesion 99.0 1.5E-10 5.1E-15 61.0 2.7 67 10-95 194-260 (265)
382 3r8b_B G5-8, enterotoxin type 99.0 2.9E-08 1E-12 47.1 10.4 78 3-84 7-100 (125)
383 2ptt_A CD48 antigen; CD244, CD 99.0 1.2E-09 4E-14 50.7 5.4 73 7-86 9-96 (110)
384 1z7z_I Intercellular adhesion 99.0 5.8E-10 2E-14 62.5 5.0 68 9-95 378-445 (450)
385 2w59_A IGY FCU3-4; immunoglobu 99.0 2.6E-09 8.8E-14 55.5 7.0 81 7-88 19-102 (231)
386 1za6_B IGG heavy chain; immuno 99.0 1.7E-08 5.9E-13 55.0 10.5 75 9-86 8-102 (344)
387 3bqu_C 3H6 FAB light chain; be 99.0 2.4E-10 8.3E-15 59.1 3.1 73 15-87 148-223 (233)
388 2oi9_C V beta, T cell receptor 99.0 1.8E-08 6.2E-13 47.6 9.3 79 2-85 2-96 (121)
389 1neu_A Myelin P0 protein; stru 99.0 1.8E-08 6.3E-13 47.4 9.3 79 7-88 5-106 (124)
390 3fku_X Neutralizing antibody F 99.0 3.7E-09 1.3E-13 56.4 7.5 71 11-86 149-234 (280)
391 3bik_B Programmed cell death p 99.0 4.9E-08 1.7E-12 46.9 10.8 80 4-86 12-106 (134)
392 2vol_A Murine IGG FC; FC, zinc 99.0 1.1E-09 3.9E-14 55.9 5.4 81 7-88 8-93 (207)
393 1ypz_E T cell receptor delta, 99.0 2.7E-08 9.1E-13 50.9 10.4 80 3-85 3-93 (207)
394 2aw2_A B and T lymphocyte atte 99.0 2.4E-08 8.2E-13 45.8 8.9 80 9-90 19-100 (120)
395 1itb_B Type 1 interleukin-1 re 99.0 2E-09 6.9E-14 57.8 6.6 70 11-89 113-189 (315)
396 1qgc_4 Protein (immunoglobulin 99.0 6.8E-09 2.3E-13 58.0 8.8 80 3-87 3-99 (438)
397 1op3_H FAB 2G12, heavy chain; 99.0 1.4E-08 4.7E-13 52.4 9.4 75 10-87 9-103 (225)
398 2ny1_B T-cell surface glycopro 99.0 6.6E-10 2.2E-14 55.6 4.3 76 10-87 4-92 (184)
399 1b6u_A KIR2DL3, P58 killer cel 99.0 3.5E-09 1.2E-13 56.0 7.2 77 1-84 7-83 (257)
400 3eow_R Poliovirus receptor; im 99.0 5.8E-09 2E-13 53.6 7.8 78 14-94 128-207 (221)
401 1hkf_A NKP44, NK cell activati 99.0 8.2E-08 2.8E-12 45.4 11.5 79 5-86 14-107 (122)
402 1qgc_4 Protein (immunoglobulin 99.0 9.9E-10 3.4E-14 61.3 5.3 73 15-88 130-206 (438)
403 4fmk_A Poliovirus receptor-rel 99.0 3.9E-09 1.3E-13 53.8 7.2 82 9-90 9-110 (225)
404 1e07_A Carcinoembryonic antige 99.0 2.4E-09 8.1E-14 62.5 7.0 65 9-90 389-453 (642)
405 2j6e_L IGM, FAB light chain; a 99.0 4.1E-09 1.4E-13 54.5 7.2 75 8-87 26-115 (234)
406 1nko_A Sialic acid binding IG- 99.0 6.7E-09 2.3E-13 49.6 7.5 77 6-85 11-110 (132)
407 3pl6_D MBP peptide / T-cell re 99.0 1.3E-08 4.4E-13 53.7 9.2 76 4-84 29-121 (268)
408 3u83_A Poliovirus receptor-rel 99.0 8.6E-08 2.9E-12 51.8 12.5 83 9-95 140-226 (331)
409 3uzq_A Anti-dengue MAB 4E11; d 99.0 2.4E-08 8.2E-13 52.3 10.1 79 6-87 6-104 (253)
410 3q5y_A TCR N15 beta; IG, T cel 99.0 7.2E-09 2.5E-13 53.9 8.0 76 3-83 4-95 (240)
411 1ccz_A Protein (CD58); LFA-3, 99.0 1.3E-09 4.5E-14 54.3 5.0 76 10-87 4-84 (171)
412 1kxv_C Camelid VHH domain CAB1 99.0 6.1E-08 2.1E-12 45.7 10.6 78 4-85 4-100 (121)
413 1moe_A Anti-CEA MAB T84.66; an 99.0 1.9E-08 6.3E-13 52.2 9.5 74 8-84 126-219 (240)
414 2h32_A Immunoglobulin IOTA cha 99.0 9.8E-08 3.3E-12 45.4 11.5 80 4-87 4-103 (126)
415 3bkj_L WO2 IGG2A FAB fragment 99.0 4.7E-10 1.6E-14 58.8 3.5 73 15-88 164-240 (252)
416 2gjj_A A21 single-chain antibo 99.0 3.6E-08 1.2E-12 52.2 10.7 72 11-85 148-239 (264)
417 2xqy_G A13-D6.3 monoclonal ant 99.0 5.3E-08 1.8E-12 51.6 11.3 76 8-86 13-108 (261)
418 1mju_H Immunoglobulin MS6-12; 99.0 2.8E-08 9.6E-13 51.4 10.0 75 8-85 7-101 (227)
419 3umt_A SCFV heavy chain and li 99.0 2E-08 7E-13 52.7 9.6 73 10-85 11-103 (256)
420 3b9v_A Heavy chain variable do 99.0 6E-08 2.1E-12 45.6 10.3 78 4-85 4-101 (120)
421 1n4x_H Immunoglobulin heavy ch 99.0 7.1E-08 2.4E-12 45.4 10.6 78 4-85 4-101 (120)
422 3bae_H WO2 IGG2A FAB fragment 99.0 1.4E-08 4.7E-13 52.6 8.7 76 13-92 142-219 (228)
423 1lp9_E T-cell receptor alpha c 99.0 6.8E-09 2.3E-13 52.8 7.4 79 3-84 3-94 (194)
424 2q86_A Valpha14 TCR; INKT cell 99.0 2.2E-08 7.7E-13 52.2 9.4 79 3-84 3-94 (229)
425 1igt_B IGG2A intact antibody - 99.0 2.4E-09 8.3E-14 60.1 6.2 76 13-89 252-331 (444)
426 3d9a_H Heavy chain of hyhel10 99.0 1.5E-08 5.3E-13 51.6 8.7 74 9-85 8-100 (210)
427 2or7_A T-cell immunoglobulin a 99.0 6.8E-09 2.3E-13 48.5 6.9 77 8-87 4-98 (115)
428 3omz_A Human vdelta1 gamma del 99.0 6E-09 2.1E-13 54.8 7.3 79 3-84 138-230 (259)
429 1j05_H T84.66 antibody, anti-C 99.0 7.5E-08 2.6E-12 45.4 10.5 78 4-85 4-101 (121)
430 3ejj_X Macrophage colony-stimu 99.0 3.2E-09 1.1E-13 56.3 6.3 70 7-84 95-165 (289)
431 2if7_A SLAM family member 6; N 99.0 1.2E-08 4.1E-13 51.7 8.1 63 15-94 122-187 (193)
432 3nl4_H Antigen binding fragmen 99.0 2.1E-08 7.1E-13 51.4 9.1 75 8-87 6-99 (215)
433 1yc7_A Anti-VSG immunoglobulin 99.0 1E-07 3.5E-12 45.2 10.9 78 4-85 4-100 (124)
434 2bnu_A TCR alpha chain, T-cell 99.0 2.2E-08 7.5E-13 51.2 9.1 78 4-84 3-93 (203)
435 1hxm_A Gamma-delta T-cell rece 99.0 3.8E-08 1.3E-12 51.2 10.1 80 3-85 3-97 (229)
436 1a2y_B IGG1-kappa D1.3 FV (hea 98.9 1.2E-07 4E-12 44.4 10.9 78 4-85 4-100 (116)
437 2nms_A CMRF35-like-molecule 1; 98.9 1.3E-07 4.4E-12 44.9 12.0 76 8-86 9-98 (124)
438 3r4d_A CEA-related cell adhesi 98.9 3E-09 1E-13 54.0 5.8 77 10-86 8-94 (208)
439 3vh8_G Killer cell immunoglobu 98.9 1E-09 3.6E-14 59.1 4.2 72 1-84 24-95 (316)
440 1mju_H Immunoglobulin MS6-12; 98.9 1.9E-08 6.5E-13 52.1 8.6 74 13-90 133-208 (227)
441 4fmk_A Poliovirus receptor-rel 98.9 7.4E-08 2.5E-12 49.1 10.8 74 13-89 133-207 (225)
442 1vca_A VCAM-D1,2, human vascul 98.9 4.7E-08 1.6E-12 49.8 10.0 76 11-88 101-179 (202)
443 1ypz_F T-cell receptor gamma c 98.9 1.7E-08 5.8E-13 52.4 8.4 79 4-85 4-101 (230)
444 2vol_A Murine IGG FC; FC, zinc 98.9 5E-09 1.7E-13 53.5 6.4 72 15-87 123-196 (207)
445 1q9r_B S25-2 FAB (IGG1K) heavy 98.9 1.9E-08 6.6E-13 51.7 8.6 74 10-86 9-104 (222)
446 2yc1_A Single chain antibody f 98.9 6.5E-08 2.2E-12 45.3 9.7 78 4-85 4-101 (117)
447 2v5y_A Receptor-type tyrosine- 98.9 1E-08 3.5E-13 60.9 8.4 74 9-88 172-248 (731)
448 4dkd_C Macrophage colony-stimu 98.9 1.5E-09 5.3E-14 57.6 4.5 77 1-92 4-80 (292)
449 2pet_A Lutheran blood group gl 98.9 1.8E-08 6.1E-13 51.9 8.4 87 7-93 6-108 (231)
450 3dmm_C T-cell surface glycopro 98.9 6.9E-08 2.4E-12 48.1 10.1 80 2-85 10-112 (166)
451 1p6f_A NKP46, natural cytotoxi 98.9 1E-08 3.5E-13 53.8 7.5 63 12-85 112-174 (242)
452 1pz5_B Heavy chain of FAB (SYA 98.9 6.8E-08 2.3E-12 49.6 10.4 75 9-86 8-104 (220)
453 1bec_A 14.3.D T cell antigen r 98.9 2.8E-08 9.5E-13 51.7 9.1 78 4-86 2-95 (238)
454 2fbj_H IGA-kappa J539 FAB (hea 98.9 5.4E-08 1.8E-12 50.1 10.0 80 4-87 4-103 (220)
455 2xt1_B Camelid VHH 9; viral pr 98.9 1.6E-07 5.6E-12 44.3 11.1 76 4-83 6-101 (121)
456 1dee_B IGM RF 2A2; FAB-IBP com 98.9 5.8E-08 2E-12 50.1 10.0 75 9-86 8-102 (223)
457 3qib_D 2B4 beta chain; IG doma 98.9 2.4E-08 8.3E-13 52.8 8.8 77 4-85 30-123 (270)
458 1dn0_B IGM-kappa cold agglutin 98.9 6E-08 2E-12 50.4 10.1 77 14-92 138-220 (232)
459 3qjh_A 5C.C7 alpha chain; immu 98.9 2.7E-08 9.1E-13 51.1 8.6 76 4-83 6-92 (205)
460 3bae_H WO2 IGG2A FAB fragment 98.9 2.2E-08 7.6E-13 51.8 8.4 76 9-87 8-104 (228)
461 1op3_H FAB 2G12, heavy chain; 98.9 5.7E-09 1.9E-13 53.9 6.2 75 13-90 140-216 (225)
462 1wio_A CD4, T-cell surface gly 98.9 4.6E-09 1.6E-13 57.6 6.0 64 12-91 107-170 (363)
463 2x1w_L Vascular endothelial gr 98.9 1.6E-09 5.6E-14 55.5 4.1 70 9-87 15-88 (213)
464 3noi_A Natural cytotoxicity tr 98.9 3.6E-09 1.2E-13 49.9 4.9 77 8-84 14-102 (120)
465 3liz_H 4C3 monoclonal antibody 98.9 2.5E-08 8.5E-13 52.4 8.5 76 13-92 136-213 (253)
466 2wqr_A IG epsilon chain C regi 98.9 5.6E-09 1.9E-13 56.5 6.1 74 17-91 25-100 (323)
467 2gki_A Nuclease; anti-DNA anti 98.9 4.8E-08 1.6E-12 52.3 9.5 75 9-86 30-124 (291)
468 3mbe_C I-AG7; T cell receptor, 98.9 5.9E-08 2E-12 50.6 9.5 78 3-84 3-91 (229)
469 2rgs_A I, IG gamma-2B heavy ch 98.9 4.4E-09 1.5E-13 54.1 5.4 73 15-88 131-205 (218)
470 3fku_X Neutralizing antibody F 98.9 2.3E-08 7.8E-13 53.3 8.2 79 3-85 3-101 (280)
471 2p45_B Antibody CAB-RN05; seMe 98.9 7.1E-08 2.4E-12 45.6 9.1 78 4-85 6-103 (123)
472 1dlf_H Anti-dansyl immunoglobu 98.9 1.9E-07 6.6E-12 44.2 10.6 78 4-85 4-103 (124)
473 3bn9_D E2 FAB heavy chain; ant 98.9 6.3E-08 2.1E-12 51.2 9.7 80 4-87 4-103 (257)
474 1mfa_H IGG1-lambda Se155-4 FAB 98.9 2E-07 6.7E-12 43.9 10.4 78 4-85 4-101 (120)
475 1hnf_A CD2; T lymphocyte adhes 98.9 7.9E-09 2.7E-13 52.1 5.9 73 9-89 7-92 (182)
476 1zvh_A Immunoglobulin heavy ch 98.9 9E-08 3.1E-12 46.0 9.3 78 4-85 4-101 (134)
477 2zg1_A Sialic acid-binding IG- 98.9 1.4E-08 4.8E-13 51.8 6.9 78 6-86 5-105 (214)
478 2wqr_A IG epsilon chain C regi 98.9 9.1E-09 3.1E-13 55.7 6.4 78 9-87 121-202 (323)
479 2ak4_D SB27 T cell receptor al 98.9 1.2E-07 4.1E-12 48.8 10.2 80 3-85 5-99 (211)
480 1l6x_A Immunoglobulin gamma-1 98.9 7.9E-09 2.7E-13 52.7 5.8 75 14-89 16-94 (207)
481 3kgr_A LAIR-1, hlair1, leukocy 98.9 4.2E-08 1.4E-12 45.3 7.8 78 1-85 9-87 (106)
482 1i3u_A Antibody VHH LAMA domai 98.9 2.8E-07 9.6E-12 43.8 10.8 78 4-85 4-106 (127)
483 3to4_D NKT vbeta2 (mouse varia 98.9 3.5E-08 1.2E-12 51.8 8.3 76 5-86 5-97 (253)
484 3lh2_H FV 4E10 heavy chain; ep 98.9 3.2E-07 1.1E-11 44.3 11.1 81 3-87 5-105 (137)
485 1dqt_A CTLA4, cytotoxic T lymp 98.9 1.1E-07 3.8E-12 44.5 9.3 77 8-84 6-96 (117)
486 3tjh_C 42F3 alpha; IG MHC, ant 98.9 9.1E-08 3.1E-12 49.8 9.6 78 4-84 12-103 (226)
487 3v2a_R Vascular endothelial gr 98.9 1.9E-07 6.3E-12 55.5 12.1 85 9-94 232-321 (772)
488 1x9q_A SCFV, 4M5.3 anti-fluore 98.9 7.7E-08 2.6E-12 50.9 9.6 73 10-85 160-254 (268)
489 1n26_A IL-6 receptor alpha cha 98.9 4.7E-09 1.6E-13 57.0 5.0 68 5-81 10-78 (325)
490 1b6u_A KIR2DL3, P58 killer cel 98.9 1.1E-08 3.7E-13 54.1 6.2 66 12-85 117-182 (257)
491 1xed_A Polymeric-immunoglobuli 98.9 1.5E-07 5.1E-12 44.2 9.4 75 8-85 7-97 (117)
492 2wzp_D Camelid VHH5; baseplate 98.9 6E-08 2.1E-12 45.8 8.1 78 4-85 4-101 (123)
493 4frw_A Poliovirus receptor-rel 98.8 1.6E-08 5.5E-13 51.3 6.5 82 7-88 5-104 (218)
494 1c5d_H Monoclonal antibody aga 98.8 3.8E-08 1.3E-12 50.5 7.8 75 9-86 8-101 (215)
495 3rgv_A YAE62 TCR A chain; TCR, 98.8 4.3E-08 1.5E-12 50.2 7.9 79 3-84 2-93 (200)
496 4ei6_A Valpha1 XV19 type II na 98.8 2.7E-08 9.2E-13 51.2 7.1 79 3-84 4-94 (208)
497 3o3u_N Maltose-binding peripla 98.8 2.8E-09 9.4E-14 61.6 3.9 73 9-89 374-458 (581)
498 1hzh_H IGG, immunoglobulin hea 98.8 4.5E-08 1.5E-12 55.2 8.6 74 13-89 144-219 (457)
499 3m8o_H Immunoglobulin A1 heavy 98.8 1.6E-07 5.5E-12 48.3 10.1 73 10-85 9-103 (221)
500 4fqp_A Poliovirus receptor; im 98.8 2.1E-07 7.1E-12 50.1 10.9 76 10-88 126-202 (313)
No 1
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.82 E-value=4.9e-19 Score=81.56 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
||.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+.. ...++.+.... ....|.|.++...|.|.|.
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~ 79 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD-----DLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECS-----SEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeeccc-----ceEEEEEcCCCccCCEEEE
Confidence 36666677788899999999999999999999999998766542 22344443321 2467999999999999999
Q ss_pred EEEecCCCceEEEEEe
Q psy4613 80 CIAKNSLGEVESSIRL 95 (96)
Q Consensus 80 c~~~~~~g~~~~~~~l 95 (96)
|.+.|..|.....+.|
T Consensus 80 C~a~N~~G~~~~~~~l 95 (100)
T 3knb_A 80 LSLGNEFGSDSATVNI 95 (100)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEEEECCCEEEEEEEE
Confidence 9999999988777665
No 2
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.82 E-value=4.7e-19 Score=82.53 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=70.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|
T Consensus 13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 86 (107)
T 3knb_B 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA-ASERLSFPADG-----AEHGLLLTAALPTDAGVYVC 86 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEECCEET-----TEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccccc-ceeeEEEeecC-----ceEEEEEecCChhhCEEEEE
Confidence 3667777777889999999999999999999999999876553 33444433211 24679999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 87 ~a~N~~G~~~~~~~l 101 (107)
T 3knb_B 87 RARNAAGEAYAAAAV 101 (107)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEECCCEEEEEEEE
Confidence 999999987776654
No 3
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.78 E-value=1.3e-17 Score=76.39 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=68.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+.....++...... ....|.|.++...|.|.|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C 79 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG-----GLCRLRILAAERGDAGFYTC 79 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGG-----GEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCC-----CEEEEEEccCCcCCCEEEEE
Confidence 3667777777889999999999999999999999999876554222222221111 23579999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 80 ~a~N~~g~~~~~~~l 94 (99)
T 1u2h_A 80 KAVNEYGARQCEARL 94 (99)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEECCCceeEEEEE
Confidence 999999987766654
No 4
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.77 E-value=3.6e-17 Score=75.42 Aligned_cols=89 Identities=19% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++...... ....|.|.++...|.|.|.|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C 81 (103)
T 3qp3_A 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQ-ESSKIHYTNTS-----GVLTLEILDCHTDDSGTYRA 81 (103)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECC-CCCCEEEEECC-----CEEEEEEcCCCcccCEEEEE
Confidence 3666677777889999999999999999999999999875553 33444433211 23579999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.......|
T Consensus 82 ~a~N~~G~~~~~~~l 96 (103)
T 3qp3_A 82 VCTNYKGEASDYATL 96 (103)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEeCCCcEEEEEEE
Confidence 999999987766654
No 5
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.77 E-value=3.6e-17 Score=74.92 Aligned_cols=90 Identities=22% Similarity=0.142 Sum_probs=68.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...+........ ....|.|.++...|.|.|.|
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~-~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C 79 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIE-RSDRIYWYWPED----NVCELVIRDVTGEDSASIMV 79 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEEEET----TEEEEEECSCCGGGCEEEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECC-CCCCEEEEEcCC----CEEEEEECCCCcCCCEEEEE
Confidence 3666667777889999999999999999999999999876553 223332221110 24579999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 80 ~a~N~~g~~~~~~~l 94 (99)
T 1g1c_A 80 KAINIAGETSSHAFL 94 (99)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEECCCcEEEEEEE
Confidence 999999987776654
No 6
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.77 E-value=4e-17 Score=76.59 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=69.3
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|
T Consensus 7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 80 (114)
T 2cqv_A 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQ-ESEHMKVENSE-----NGSKLTILAARQEHCGCYTL 80 (114)
T ss_dssp CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCC-CSSSEEEEECS-----SEEEEEETTCCTTTCEEEEE
T ss_pred CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECc-CCCCEEEEEcC-----CEEEEEECCCChhcCEEEEE
Confidence 4667667777889999999999999999999999999876553 33444443211 24689999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 81 ~a~N~~g~~~~~~~l 95 (114)
T 2cqv_A 81 LVENKLGSRQAQVNL 95 (114)
T ss_dssp EEECSSCEEECCEEE
T ss_pred EEEECCCcEEEEEEE
Confidence 999999876555443
No 7
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.77 E-value=1.2e-17 Score=75.83 Aligned_cols=87 Identities=21% Similarity=0.269 Sum_probs=68.5
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+|.+..++..+.+..|+.+.|.|.+.+.|.|.+.|++++ ..+. ... ...... ....|.|.++...|.|.|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~-~~~--~~~~~~-----~~~~L~i~~~~~~D~G~Y 73 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA-PEL--LVDAKS-----STTSIFFPSAKRADSGNY 73 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCS-TTS--EEEEET-----TEEEEECTTBCGGGCEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccC-CcE--EEEecC-----CEEEEEECCCChhcCEEE
Confidence 577777778888999999999999999999999999987 4432 111 111111 246799999999999999
Q ss_pred EEEEecCCCceEEEEEe
Q psy4613 79 KCIAKNSLGEVESSIRL 95 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~l 95 (96)
.|.+.|..|.....+.|
T Consensus 74 ~C~a~N~~G~~~~~~~l 90 (93)
T 1wit_A 74 KLKVKNELGEDEAIFEV 90 (93)
T ss_dssp EEEEEETTEEEEEEEEE
T ss_pred EEEEEcCCCeEEEEEEE
Confidence 99999999988777655
No 8
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.76 E-value=9.3e-17 Score=73.50 Aligned_cols=88 Identities=27% Similarity=0.390 Sum_probs=69.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.++...|.|.|.|.
T Consensus 7 P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~ 80 (99)
T 3puc_A 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAIT-QGGKYKLSEDK-----GGFFLEIHKTDTSDSGLYTCT 80 (99)
T ss_dssp EEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred CEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECc-CCCCEEEEEeC-----CEEEEEECCCCcccCEEEEEE
Confidence 566667777889999999999999999999999999865543 33454443311 235799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 81 a~n~~g~~~~~~~l 94 (99)
T 3puc_A 81 VKNSAGSVSSSCKL 94 (99)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEeCCCcEeEEEEE
Confidence 99999987766654
No 9
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-17 Score=74.73 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=66.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... .+....... . ....|.|.++...|.|.|.|.
T Consensus 6 P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C~ 80 (100)
T 2kdg_A 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD-DLHKMIVSE-K---GLHSLIFEVVRASDAGAYACV 80 (100)
T ss_dssp EECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCC-SSSCEEEET-T---TEEEEEESSCCGGGCEEEEEE
T ss_pred CeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCC-CcEEEEEcC-C---CeEEEEECCCCcccCEEEEEE
Confidence 55555666778899999999999999999999999987655322 221111111 0 225799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 81 a~n~~g~~~~~~~l 94 (100)
T 2kdg_A 81 AKNRAGEATFTVQL 94 (100)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEcCCCeEEEEEEE
Confidence 99999987766654
No 10
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.74 E-value=1.3e-16 Score=73.00 Aligned_cols=89 Identities=18% Similarity=0.263 Sum_probs=68.8
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. ...++...... ....|.|.++...|.|.|.|
T Consensus 6 P~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C 80 (100)
T 3irg_A 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD-----DLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp EEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECS-----SEEEEEESSCCGGGCEEEEE
T ss_pred CeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecC-----CEEEEEEeecCcccCEEEEE
Confidence 5566666778899999999999999999999999998655432 23344443211 24679999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 81 ~a~n~~g~~~~~~~l 95 (100)
T 3irg_A 81 SLGNEFGSDSATVNI 95 (100)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEeCCCcEEEEEEE
Confidence 999999987766654
No 11
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.73 E-value=8.5e-16 Score=70.13 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=67.9
Q ss_pred eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
.+..++..+.+..|+.+.|.|.+.+. |.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.
T Consensus 3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~ 76 (97)
T 2bk8_A 3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLE-NSEKYEITYED-----GVAILYVKDITKLDDGTYRCK 76 (97)
T ss_dssp CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECc-CCCCEEEEEcC-----CeEEEEEecCChhhCeEEEEE
Confidence 45566777889999999999999997 889999999865543 33454443211 235799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.......|
T Consensus 77 a~n~~g~~~~~~~l 90 (97)
T 2bk8_A 77 VVNDYGEDSSYAEL 90 (97)
T ss_dssp EECSSCEEEEEEEE
T ss_pred EECCCCeEeEEEEE
Confidence 99999987776654
No 12
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.73 E-value=5.6e-17 Score=75.33 Aligned_cols=89 Identities=20% Similarity=0.340 Sum_probs=69.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|
T Consensus 14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 87 (106)
T 1nct_A 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLS-TSARHQVTTTK-----YKSTFEISSVQASDEGNYSV 87 (106)
T ss_dssp CCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCT-TCSSEEEEECS-----SEEEEEECCCCSSCCSEEEE
T ss_pred CCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECC-CCCCEEEEECC-----CEEEEEECcCCchhCEEEEE
Confidence 3667777788889999999999999999999999999865543 33444433211 24689999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 88 ~a~N~~G~~~~~~~l 102 (106)
T 1nct_A 88 VVENSEGKQEAEFTL 102 (106)
T ss_dssp CCBCSSCBCCEEEEE
T ss_pred EEEeCCCeEEEEEEE
Confidence 999999987666554
No 13
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=74.81 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=66.3
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+... ...... ....|.|.++...|.|.|.|
T Consensus 11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~--~~~~~~-------~~~~L~i~~v~~~D~G~Y~C 81 (99)
T 2yr3_A 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA--RSTCEA-------GVAELHIQDALPEDHGTYTC 81 (99)
T ss_dssp EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSC--CCEEET-------TEEEEEECSCCTTCCBCEEE
T ss_pred CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECccc--ceEeeC-------CeEEEEECCCChhhCEEEEE
Confidence 356666677788999999999999999999999999986554311 111111 24679999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 82 ~a~N~~g~~~~~~~l 96 (99)
T 2yr3_A 82 LAENALGQVSCSAWV 96 (99)
T ss_dssp EEECSSCEEEEECCE
T ss_pred EEEECCCeEEEEEEE
Confidence 999999987665443
No 14
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.73 E-value=2.2e-16 Score=73.23 Aligned_cols=88 Identities=22% Similarity=0.339 Sum_probs=67.6
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.
T Consensus 14 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~ 87 (107)
T 3irg_B 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLA-ASERLSFPADG-----AEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEECCEET-----TEEEEEESSCCGGGCEEEEEE
T ss_pred CeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECC-CCCcEEEEeCC-----CEEEEEEccCCHHhCEEEEEE
Confidence 566666777889999999999999999999999999865543 23343322211 234799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 88 a~n~~g~~~~~~~l 101 (107)
T 3irg_B 88 ARNAAGEAYAAAAV 101 (107)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEcCCCcEEEEEEE
Confidence 99999887766554
No 15
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.8e-17 Score=74.96 Aligned_cols=89 Identities=22% Similarity=0.313 Sum_probs=67.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++.+.... . ....|.|.++...|.|.|.|
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm2_A 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL-D---GTCSLHTTASTLDDDGNYTI 83 (110)
T ss_dssp CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECT-T---CEEEEEESSCCTTTCSCCEE
T ss_pred CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECC-C---cEEEEEECCCChhhCEEEEE
Confidence 3556566677788999999999999999999999999876554333455443321 0 23579999999999999999
Q ss_pred EEecCCCceEEEE
Q psy4613 81 IAKNSLGEVESSI 93 (96)
Q Consensus 81 ~~~~~~g~~~~~~ 93 (96)
.+.|..|.....+
T Consensus 84 ~a~N~~g~~~~~~ 96 (110)
T 2dm2_A 84 MAANPQGRISCTG 96 (110)
T ss_dssp EEECTTCCEEECC
T ss_pred EEEECCCeEEEEE
Confidence 9999998765544
No 16
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=75.18 Aligned_cols=90 Identities=26% Similarity=0.369 Sum_probs=69.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++....... ....|.|.++...|.|.|.|.
T Consensus 16 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 91 (116)
T 2kkq_A 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT----GRVTLLIKDVNKKDAGWYTVS 91 (116)
T ss_dssp CCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTT----CEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCC----CeEEEEECCCCcccCEEEEEE
Confidence 4555666778899999999999999999999999998765543334554433111 234799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 92 a~N~~G~~~~~~~l 105 (116)
T 2kkq_A 92 AVNEAGVTTCNTRL 105 (116)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEcCCCeEEEEEEE
Confidence 99999987666554
No 17
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.72 E-value=1e-16 Score=77.67 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=63.7
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccc----------------------------eeEecccceEEEEeccccc
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----------------------------DMVISSERYEVESISRSIF 59 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 59 (96)
+..+.+..|..+.|.|.+.|.|.|.+.|++++. .+.....++.+....
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~---- 100 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK---- 100 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEET----
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCC----
Confidence 356778999999999999999999999999872 221122344333211
Q ss_pred eEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 60 ~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
....|.|.++...|+|.|.|.+.|..|.....+.|
T Consensus 101 -~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L 135 (139)
T 1gxe_A 101 -DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 135 (139)
T ss_dssp -TEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEE
T ss_pred -CEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEE
Confidence 24679999999999999999999999988777655
No 18
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=75.35 Aligned_cols=87 Identities=24% Similarity=0.358 Sum_probs=67.0
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++... ....|.|.++...|.|.|.|
T Consensus 8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C 79 (100)
T 2edj_A 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--------EQGTLQIKNLRISDTGTYTC 79 (100)
T ss_dssp SCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC--------TTCCEEEESCCTTTCCEEEE
T ss_pred CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc--------CCCEEEEccCCcccCEEEEE
Confidence 4677777777888999999999999999999999999876554222333221 12468999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 80 ~a~n~~g~~~~~~~l 94 (100)
T 2edj_A 80 VATSSSGETSWSAVL 94 (100)
T ss_dssp EEECSSCCCBCCEEE
T ss_pred EEEcCCCCEEEEEEE
Confidence 999998876555443
No 19
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.2e-16 Score=72.71 Aligned_cols=81 Identities=15% Similarity=0.264 Sum_probs=62.9
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
...+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ..+..+.... ....|.|.++...|.|.|.|.+.|..|
T Consensus 31 ~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~--~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N~~G 103 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD--TSRVHVRTSD-----FDTVFFVRQAARSDSGEYELSVQIENM 103 (118)
T ss_dssp SSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC--CSSCEEEECS-----SEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred CCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC--CCcEEEEECC-----CeEEEEECCCChhcCEEEEEEEEeCCC
Confidence 356778899999999999999999999999876553 2333333211 246799999999999999999999999
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
.....+.|
T Consensus 104 ~~~~~~~l 111 (118)
T 2e7c_A 104 KDTATIRI 111 (118)
T ss_dssp EECCEEEE
T ss_pred eEEEEEEE
Confidence 76665544
No 20
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=75.24 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=68.0
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. .......... . ....|.|.+++..|.|.|.|
T Consensus 9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~-~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP-DSAHKMLVRE-N---GVHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCC-CSSEEEEECT-T---SCEEEEESSCCGGGCSBBCE
T ss_pred CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCC-CCceEEEEec-C---CeEEEEEeeCCcccCEEEEE
Confidence 47777778888899999999999999999999999998665432 2222221111 1 13579999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 84 ~a~n~~g~~~~~~~l 98 (110)
T 2dm3_A 84 IATNRAGQNSFSLEL 98 (110)
T ss_dssp EEECSSCEEEECCEE
T ss_pred EEECCCCEEEEEEEE
Confidence 999999876655443
No 21
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=76.30 Aligned_cols=86 Identities=24% Similarity=0.304 Sum_probs=66.3
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.+.+.+.|++++..+.....++.... ...|.|.++...|.|.|.|
T Consensus 8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C 79 (118)
T 2eo9_A 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE--------NGVLQIRYAKLGDTGRYTC 79 (118)
T ss_dssp SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE--------TTEEEEESCCGGGCCCEEE
T ss_pred CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc--------CCEEEEccCCcCCCEEEEE
Confidence 35555566677889999999999999999999999998765543334443322 2479999999999999999
Q ss_pred EEecCCCceEEEEE
Q psy4613 81 IAKNSLGEVESSIR 94 (96)
Q Consensus 81 ~~~~~~g~~~~~~~ 94 (96)
.+.|..|.....+.
T Consensus 80 ~a~n~~g~~~~~~~ 93 (118)
T 2eo9_A 80 IASTPSGEATWSAY 93 (118)
T ss_dssp EEECSSCEEEEECC
T ss_pred EEEcCCCcEEEEEE
Confidence 99999987665543
No 22
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.69 E-value=1.2e-15 Score=71.02 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=65.7
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeeccc---ceeEEeeccceeEe--cccceEEEEec-cccceEEEEEEEccCCCCCC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDMVI--SSERYEVESIS-RSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~ 75 (96)
|.+...+..+.+..|+.+.|.|.+.+.|. |.+.|++++..... ...++.+.... .........|.|.+++..|.
T Consensus 5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 84 (108)
T 3cx2_A 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT 84 (108)
T ss_dssp CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGC
T ss_pred cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccC
Confidence 44555667788999999999999999888 89999987522111 11233322111 01111246899999999999
Q ss_pred eeEEEEEecCCCceEEEEEe
Q psy4613 76 GSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 76 g~y~c~~~~~~g~~~~~~~l 95 (96)
|.|.|.+.|..|...+.+.|
T Consensus 85 G~Y~C~a~N~~G~~~~~~~L 104 (108)
T 3cx2_A 85 GSYRCEVSTKDKFDCSNFNL 104 (108)
T ss_dssp EEEEEEEECSSCEEEEEEEE
T ss_pred EEEEEEEecCCCceEEEEEE
Confidence 99999999999988777665
No 23
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.69 E-value=2.3e-15 Score=73.99 Aligned_cols=89 Identities=25% Similarity=0.414 Sum_probs=68.5
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|..+.|.|.+.+.|.+.+.|++++..+. ...++.+.... . ....|.|.++...|.|.|.|.
T Consensus 42 P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~-~~~~~~~~~~~-~---~~~~L~I~~v~~~D~G~Y~C~ 116 (154)
T 1fhg_A 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDE-E---GNCSLTISEVCGDDDAKYTCK 116 (154)
T ss_dssp EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CSSSEEEEECT-T---CEEEEEESSCCGGGCEEEEEE
T ss_pred CeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECC-CCCcEEEEECC-C---CeEEEEECCCChhcCEEEEEE
Confidence 556666677888999999999999999999999999875543 33444433211 0 236899999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 117 a~N~~G~~~~~~~l 130 (154)
T 1fhg_A 117 AVNSLGEATCTAEL 130 (154)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEECCCeEEEEEEE
Confidence 99999987766554
No 24
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.69 E-value=2.3e-16 Score=71.88 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=63.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|+.+.|.|.+.+.+ +.+.|++++..+. ...++.+. ...|.|.+++..|.|.|.|.
T Consensus 10 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~-~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~ 78 (95)
T 2ckn_A 10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLV-ESNRTRIT---------GEEVEVRDSIPADSGLYACV 78 (95)
T ss_dssp CCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCC-CCSSEEEC---------SSEEEESSCCGGGSEEEEEE
T ss_pred CEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecC-CCCCEEEe---------CCEEEECCCChHHCEEEEEE
Confidence 3444455667789999999999999987 7999999865543 23343322 25799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 79 a~n~~g~~~~~~~l 92 (95)
T 2ckn_A 79 TSSPSGSDTTYFSV 92 (95)
T ss_dssp EEETTEEEEEEEEE
T ss_pred eccCCCcEEEEEEE
Confidence 99999987766654
No 25
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.68 E-value=7.1e-15 Score=67.88 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=59.6
Q ss_pred cCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 14 PIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
..+..+.|.|.+.|.|.|.+.|++++..+. ...+................|.|.++...|.|.|.|.+.|..|.....+
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 92 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILN-ESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI 92 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEEC-CCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECC-CCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence 457789999999999999999999876553 2233211111111111346799999999999999999999999988877
Q ss_pred Ee
Q psy4613 94 RL 95 (96)
Q Consensus 94 ~l 95 (96)
.|
T Consensus 93 ~l 94 (103)
T 1wwb_X 93 SA 94 (103)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 26
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.68 E-value=1.3e-16 Score=74.08 Aligned_cols=86 Identities=22% Similarity=0.365 Sum_probs=58.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...+..... ....|.|.++...|.|.|.|.
T Consensus 11 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~ 82 (108)
T 3kvq_A 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-EDSGIVLKD-------GNRNLTIRRVRKEDEGLYTCQ 82 (108)
T ss_dssp CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCC-CBTTEEEET-------TTTEEEECSCCGGGCEEEEEE
T ss_pred CceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcc-cCCCeEEeC-------CCcEEEEeecCcccCEEEEEE
Confidence 455555666788999999999999999999999999876553 223332221 125699999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 83 a~n~~g~~~~~~~l 96 (108)
T 3kvq_A 83 ACSVLGCAKVEAFF 96 (108)
T ss_dssp EC----CEEEEEEE
T ss_pred EEeCCCceEEEEEE
Confidence 99999987766654
No 27
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.67 E-value=3.3e-15 Score=67.90 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=60.8
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+..++..+.+..|+.+.|.|.+.+ +.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~-~~~~~~i~~~g-----~~~~L~I~~v~~~D~G~Y~C 77 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLA-ASPDCEIIEDG-----KKHILILHNCQLGMTGEVSF 77 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECC-CBTTEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECc-CCCCEEEEEEC-----CEEEEEECCCChhhCEEEEE
Confidence 356677778888999999999999976 557899999876553 34555544311 23579999999999999999
Q ss_pred EEecCC
Q psy4613 81 IAKNSL 86 (96)
Q Consensus 81 ~~~~~~ 86 (96)
.+.|..
T Consensus 78 ~a~n~~ 83 (93)
T 1waa_A 78 QAANTK 83 (93)
T ss_dssp EETTEE
T ss_pred EECCCc
Confidence 998753
No 28
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.66 E-value=5.2e-15 Score=71.40 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec---------ccceEEEEeccccceEEEEEEEccCC
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS---------SERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+... ..+......... .....|.|.+++
T Consensus 21 pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~ 98 (137)
T 3qr2_A 21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ--HAASTISIDTLV 98 (137)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESS--SEEEEEEECSCC
T ss_pred CCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEeccccc--ccceEEEECCCC
Confidence 477777778888999999999999999999999999865433110 122222211111 134689999999
Q ss_pred CCCCeeEEEEEecCCCce
Q psy4613 72 KYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~g~~ 89 (96)
..|.|.|.|.+.|..|..
T Consensus 99 ~~D~G~Y~C~a~N~~G~~ 116 (137)
T 3qr2_A 99 EEDTGTYECRASNDPDRN 116 (137)
T ss_dssp GGGCEEEEEEEECCTTSS
T ss_pred cccCEEEEEEEEecCCcc
Confidence 999999999999988863
No 29
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.65 E-value=5.4e-16 Score=71.11 Aligned_cols=80 Identities=20% Similarity=0.488 Sum_probs=60.7
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..+.+..|+.+.|.|.+.+.|.+.+.|++++..+..... ...... ....|.|.++...|.|.|.|.+.|..
T Consensus 16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~ 88 (100)
T 3caf_A 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN-------QHWSLIMESVVPSDKGNYTCVVENEY 88 (100)
T ss_dssp CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG-------GGTEEEECSCCGGGCEEEEEEEEETT
T ss_pred cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEec-------CeEEEEEccCCcCCCEEEEEEEEeCC
Confidence 456788999999999999999999999998755432111 111111 12468999999999999999999999
Q ss_pred CceEEEEEe
Q psy4613 87 GEVESSIRL 95 (96)
Q Consensus 87 g~~~~~~~l 95 (96)
|.....+.|
T Consensus 89 g~~~~~~~l 97 (100)
T 3caf_A 89 GSINHTYHL 97 (100)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 987766654
No 30
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-15 Score=68.36 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=59.8
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+..+...+.+..|+.+.|.|.+ .|.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.
T Consensus 8 ~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~-~~~r~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 79 (100)
T 2yuz_A 8 LKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQ-ESDRLKVVQKG-----RIHKLVIANALTEDEGDYVFA 79 (100)
T ss_dssp CCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECC-CCSSEEEEECS-----SEEEEEESSCCGGGCSEEEEE
T ss_pred CEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECC-CCCcEEEEEeC-----CEEEEEECCCChhhCEEEEEE
Confidence 445556677789999999999999 6888999999876553 34555544321 246799999999999999999
Q ss_pred EecCC
Q psy4613 82 AKNSL 86 (96)
Q Consensus 82 ~~~~~ 86 (96)
+.|..
T Consensus 80 a~N~~ 84 (100)
T 2yuz_A 80 PDAYN 84 (100)
T ss_dssp ESSSC
T ss_pred EcCCC
Confidence 99973
No 31
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.63 E-value=5.5e-15 Score=75.75 Aligned_cols=77 Identities=25% Similarity=0.426 Sum_probs=61.5
Q ss_pred eeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 11 VGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
..+..|..+.|.|.+.+. |.|.+.|++++..+.. ..++... .....|.|.++...|.|.|.|.+.|..|..
T Consensus 126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~-~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 197 (207)
T 3rbs_A 126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-DEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKD 197 (207)
T ss_dssp EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC-CCCCCCS-------SEEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred cEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCC-CCceEcC-------CCEEEEEECCCCcccCEEEEEEEEcCCCEE
Confidence 567889999999999998 8999999998766532 2222111 134679999999999999999999999998
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
.+...|
T Consensus 198 ~~~~~L 203 (207)
T 3rbs_A 198 KSRLKL 203 (207)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 887766
No 32
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.62 E-value=5e-15 Score=66.89 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=60.2
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
+.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+... . ...|.|.++...|.|.|.|.
T Consensus 4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~--------------~~~L~i~~v~~~d~G~Y~C~ 68 (91)
T 3bfo_A 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-T--------------KKLYMVPYVDLEHQGTYWCH 68 (91)
T ss_dssp CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC-C--------------SSEEEESSCCGGGCEEEEEE
T ss_pred eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC-C--------------CCeEEECCCCHHhCEEEEEE
Confidence 56667777788999999999999999999999999986543211 1 14688999999999999999
Q ss_pred EecCCCceE
Q psy4613 82 AKNSLGEVE 90 (96)
Q Consensus 82 ~~~~~g~~~ 90 (96)
+.|..|...
T Consensus 69 a~n~~g~~~ 77 (91)
T 3bfo_A 69 VYNDRDSQD 77 (91)
T ss_dssp EECSSCEEE
T ss_pred EEcCCCCEE
Confidence 999988643
No 33
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=8.9e-15 Score=67.75 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=61.1
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+..++..+.+..|+.+.|.|.+.+.+.+ +.|++++..+. ...++.+.... ....|.|.++...|.|.|.|
T Consensus 8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 80 (106)
T 2dlt_A 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVR-PSKRITISHVG-----RFHKLVIDDVRPEDEGDYTF 80 (106)
T ss_dssp CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCC-CCSSCEEEEET-----TEEEEEESSCCTTTCSCEEE
T ss_pred CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECc-CCCCEEEEEeC-----CEEEEEECCCCcCCCEEEEE
Confidence 3566677778889999999999999988877 99999876553 33444443211 23579999999999999999
Q ss_pred EEecCC
Q psy4613 81 IAKNSL 86 (96)
Q Consensus 81 ~~~~~~ 86 (96)
.+.|..
T Consensus 81 ~a~n~~ 86 (106)
T 2dlt_A 81 VPDGYA 86 (106)
T ss_dssp EEETSC
T ss_pred EEccCC
Confidence 999873
No 34
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.61 E-value=5.6e-14 Score=66.91 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=59.3
Q ss_pred CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEecc--ccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISR--SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
.+..+.|.|.+.|.|.|.+.|++++..+. ...+........ ........|.|..+...|.|.|.|.+.|..|.....
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t 92 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS 92 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECC-CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECC-CCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence 56789999999999999999999976553 333332221110 111124679999999999999999999999998877
Q ss_pred EEe
Q psy4613 93 IRL 95 (96)
Q Consensus 93 ~~l 95 (96)
+.|
T Consensus 93 ~~l 95 (126)
T 1he7_A 93 IMA 95 (126)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 35
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.61 E-value=4.5e-15 Score=67.18 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=56.1
Q ss_pred CeEEecCce--eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 2 PVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 2 p~~~~~~~~--~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
|.+..|... +.+..|+.+.|.|.+.+ |.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.
T Consensus 5 ~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~-~~~~~~i~~~~-----~~~~L~I~~v~~~D~G~Y~ 77 (91)
T 2lvc_A 5 VHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVE-ESDFVVLENEG-----PHRRLVLPATQPSDGGEFQ 77 (91)
T ss_dssp CCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCC-CCSSCEEEEET-----TEEEEEESSCCGGGCSEEE
T ss_pred cEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEee-eeeeeeEEecC-----CeEEEEeCCCChhhcEEEE
Confidence 344445443 34568999999999865 888899999876654 34555544321 2357999999999999999
Q ss_pred EEEecC
Q psy4613 80 CIAKNS 85 (96)
Q Consensus 80 c~~~~~ 85 (96)
|.+.|.
T Consensus 78 C~a~n~ 83 (91)
T 2lvc_A 78 CVAGDE 83 (91)
T ss_dssp EECSSC
T ss_pred EEEcce
Confidence 998664
No 36
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.61 E-value=6.6e-14 Score=64.75 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=62.4
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-------ccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-------SERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
.+...+..+.+..|+.+.|.|.+.+.+.+.+.|++.+...... ..++....... ....|.|.+++..|.
T Consensus 8 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~~v~~~D~ 83 (108)
T 3m45_A 8 GQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISVSDVSLSDE 83 (108)
T ss_dssp CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESS----SEEEEEECSCCGGGC
T ss_pred CccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCC----CcEEEEECCCChhHC
Confidence 3344456678899999999999999888999999875422211 12433322110 246899999999999
Q ss_pred eeEEEEEecCCCceEEEEEe
Q psy4613 76 GSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 76 g~y~c~~~~~~g~~~~~~~l 95 (96)
|.|.|.+.+ .+.......|
T Consensus 84 G~Y~C~~~n-~~~~~~~~~L 102 (108)
T 3m45_A 84 GQYTCSLFT-MPVKTSKAYL 102 (108)
T ss_dssp EEEEEEECS-SSCEEEEEEE
T ss_pred eEEEEEEEc-CCCcEEEEEE
Confidence 999999999 7766555543
No 37
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.61 E-value=9.1e-14 Score=70.21 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=68.8
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....++....... ....|.|.+++..|.|.|.|
T Consensus 4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C 79 (197)
T 2j8h_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQV 79 (197)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEECSCCGGGCSEEEE
T ss_pred CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCC----CEEEEEECcCCHHhCEEEEE
Confidence 57787777888899999999999999989999999998766543334444332111 23489999999999999999
Q ss_pred EEecCCCceEEEEE
Q psy4613 81 IAKNSLGEVESSIR 94 (96)
Q Consensus 81 ~~~~~~g~~~~~~~ 94 (96)
.+.+..|.....+.
T Consensus 80 ~~~n~~g~~~~~~~ 93 (197)
T 2j8h_A 80 RATNQGGSVSGTAS 93 (197)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCCceeEEEE
Confidence 99998776554443
No 38
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.60 E-value=1.4e-15 Score=72.11 Aligned_cols=93 Identities=30% Similarity=0.429 Sum_probs=68.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCC-ee
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDL-GS 77 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~ 77 (96)
+|.+.. +....+..|+.+.|.|.+.+.|.|. +.|++++..+.. ...++.+..... .......|.|.++...|. |.
T Consensus 14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~~G~ 91 (122)
T 2cry_A 14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTISNIVRADFQTI 91 (122)
T ss_dssp SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECTTCCHHHHHSC
T ss_pred CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEEcCCChhhCCce
Confidence 355555 5566788999999999999999987 999998765532 134444432111 111256899999999998 99
Q ss_pred EEEEEecCCCceEEEEEe
Q psy4613 78 YKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 78 y~c~~~~~~g~~~~~~~l 95 (96)
|.|.+.|..|.....+.|
T Consensus 92 Y~C~a~N~~G~~~~~~~l 109 (122)
T 2cry_A 92 YNCTAWNSFGSDTEIIRL 109 (122)
T ss_dssp EEEEEECSSCEEEEEECC
T ss_pred EEEEEECCCCeEEEEEEE
Confidence 999999999988776654
No 39
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.60 E-value=2.8e-14 Score=65.14 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=59.4
Q ss_pred cCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 7 PNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+....+..|+.+.|.|.+. +.+.+.+.|++++.... . ..... ....|.|.+++..|.|.|.|.+.|.
T Consensus 16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~-~-~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~ 84 (98)
T 1gl4_B 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL-P-SRAMD---------FNGILTIRNVQPSDAGTYVCTGSNM 84 (98)
T ss_dssp SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC-C-TTEEE---------ETTEEEECSCCGGGCEEEEEEEECS
T ss_pred CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCC-C-ceeec---------CCCEEEEeCCChhhCEEEEEEecCC
Confidence 34666789999999999998 57888999998743322 1 11111 1247999999999999999999999
Q ss_pred CCceEEEEEe
Q psy4613 86 LGEVESSIRL 95 (96)
Q Consensus 86 ~g~~~~~~~l 95 (96)
.|.....+.|
T Consensus 85 ~g~~~~~~~l 94 (98)
T 1gl4_B 85 FAMDQGTATL 94 (98)
T ss_dssp SCEEEEEEEE
T ss_pred CCccccEEEE
Confidence 9987766654
No 40
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.59 E-value=2.3e-13 Score=69.57 Aligned_cols=89 Identities=21% Similarity=0.327 Sum_probs=68.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.+.+.+.|++++..+.....++....... ....|.|.++.. .|.|.|.
T Consensus 6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~~d~G~Y~ 81 (212)
T 2yd1_A 6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG----GISILRIEPVRAGRDDAPYE 81 (212)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETT----TEEEEEESSCCTTTTCSEEE
T ss_pred CCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCC----CeEEEEEEecCCCCcCceEE
Confidence 57777778888899999999999999999999999998765542344544432111 136799999999 9999999
Q ss_pred EEEecCCCc-eEEEE
Q psy4613 80 CIAKNSLGE-VESSI 93 (96)
Q Consensus 80 c~~~~~~g~-~~~~~ 93 (96)
|.+.+..|. ....+
T Consensus 82 C~~~n~~g~~~~~~~ 96 (212)
T 2yd1_A 82 CVAENGVGDAVSADA 96 (212)
T ss_dssp EEEECSSSCEEEEEE
T ss_pred EEEEeCCCCeEEeeE
Confidence 999998887 44443
No 41
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.59 E-value=7.8e-14 Score=66.44 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=62.8
Q ss_pred EEecCceeeecCCCcEEEEEEeeec---ccceeEEeeccceeEe--cccceEEEE-eccccceEEEEEEEccCCCCCCee
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVI--SSERYEVES-ISRSIFDFKMRLTIKKITKYDLGS 77 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~ 77 (96)
+...+..+.+..|+.+.|.|.+.+. |.|.+.|+++...... ...++.+.. ...........|.|.++...|+|.
T Consensus 10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~ 89 (126)
T 2dav_A 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN 89 (126)
T ss_dssp CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEE
Confidence 3345577789999999999998864 7899999996311110 122333321 111111124789999999999999
Q ss_pred EEEEEecCCCceEEEEEe
Q psy4613 78 YKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 78 y~c~~~~~~g~~~~~~~l 95 (96)
|.|.+.|..|...+.+.|
T Consensus 90 Y~Cevsn~~g~~~~~~~L 107 (126)
T 2dav_A 90 YRCEVTYKDKFDSCSFDL 107 (126)
T ss_dssp EEEEEECSSCEEEECCEE
T ss_pred EEEEEEeCCCcEEEEEEE
Confidence 999999998877665544
No 42
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-13 Score=70.99 Aligned_cols=88 Identities=24% Similarity=0.361 Sum_probs=65.8
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+. .+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.... .++.+.... ....|.|.++...|.|.|.|
T Consensus 20 P~~~-~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C 93 (215)
T 3mtr_A 20 PKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP-----SASYLEVTPDSENDFGNYNC 93 (215)
T ss_dssp EEEE-CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEET-----TEEEEEECCCSGGGCEEEEE
T ss_pred Cccc-CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCC-----CeeEEEEecCChhhCeEEEE
Confidence 4553 4445778899999999999999999999999876553221 233332211 24789999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 94 ~a~n~~g~~~~~~~l 108 (215)
T 3mtr_A 94 TAVNRIGQESLEFIL 108 (215)
T ss_dssp EEECSSCEEEEEEEE
T ss_pred EEEECCCceEEEEEE
Confidence 999999987665543
No 43
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.59 E-value=9.5e-14 Score=63.11 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=55.5
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
.+..++..+.+..|..+.|.|.+ +.+.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.+
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 10 AFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDIS-ASNKYGLATEG-----TRHTLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp CCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEEC-SSTTCEEEEET-----TEEEEEESSCCTTCCSEEEEEE
T ss_pred eeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECC-CCCcEEEEEcC-----CEEEEEEcCCCcccCEEEEEEE
Confidence 34445667788999999999999 77888999999876543 33455443311 2357999999999999999998
No 44
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.5e-14 Score=64.70 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=59.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+..++..+.+..|+.+.|.|.+.+ +.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 80 (103)
T 2edf_A 8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIR-KSQKYDVVCEG-----TMAMLVIRGASLKDAGEYTC 80 (103)
T ss_dssp CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCC-CSSSEEEEEET-----TEEEEEESSCCTTTCSEEEE
T ss_pred CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEcc-CCCCEEEEECC-----CEEEEEECCCCcccCEEEEE
Confidence 456666777788999999999999987 778899999876553 33444443211 24579999999999999999
Q ss_pred EEec
Q psy4613 81 IAKN 84 (96)
Q Consensus 81 ~~~~ 84 (96)
.+.|
T Consensus 81 ~a~n 84 (103)
T 2edf_A 81 EVEA 84 (103)
T ss_dssp ECSS
T ss_pred EEcc
Confidence 9988
No 45
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.58 E-value=2.1e-14 Score=64.09 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=54.2
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..+.+..|+.+.|.|.+.+ |.|.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.+.+..
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~~ 74 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLA-SQGRVQLEQAG-----ARQVLRVQGARSGDAGEYLCDAPQDS 74 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECC-CCSSEEEEECS-----SCEEEEESSCSSTTCEEEEEECTTTC
T ss_pred eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEcc-ccccEEEeecC-----CeEEEEecCCCCcccEEEEEEECCEE
Confidence 3567889999999999866 888999999876654 34555443321 23579999999999999999986643
No 46
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-14 Score=65.53 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=56.1
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+.+..|+.+.|.|.+.+.+.+ +.|++++..+. ...++.+.... ....|.|.+++..|.|.|.|.+.|..+...
T Consensus 20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~ 92 (104)
T 2e6p_A 20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVE-ESELLVVKMDG-----RKHRLILPEAKVQDSGEFECRTEGVSAFFG 92 (104)
T ss_dssp EEEESSSCEECCEECSSTTCC-CEEEETTEECC-CBTTBEEEEET-----TEEEEEESSCCTTTCEEEEEECSSCCCCEE
T ss_pred EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECC-CCCCEEEEeCC-----CEEEEEECCCChhhCEEEEEEECCceEEEE
Confidence 678999999999999998888 99999876543 23344433211 246799999999999999999998766443
No 47
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.58 E-value=5.9e-13 Score=66.99 Aligned_cols=89 Identities=26% Similarity=0.330 Sum_probs=65.6
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEee--ccceeEe--cccceEEEEeccccceEEEEEEEccCC-CCCCe
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVR--DQGDMVI--SSERYEVESISRSIFDFKMRLTIKKIT-KYDLG 76 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g 76 (96)
|.+...+....+..|..+.|.|.+.+.|.+.+.|++ ++..+.. ...++...... ....|.|.++. ..|.|
T Consensus 93 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G 167 (190)
T 2wv3_A 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE-----NYTELNIVNLQITEDPG 167 (190)
T ss_dssp CEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECS-----SEEEEEECSCCTTTSCE
T ss_pred CcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCC-----CeeEEEEEeccccCCCE
Confidence 555555556678899999999999999999999998 4333321 23344333211 23579999999 79999
Q ss_pred eEEEEEecCCCceEEEEEe
Q psy4613 77 SYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 77 ~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.+.|..|.....+.|
T Consensus 168 ~Y~C~a~N~~g~~~~~~~l 186 (190)
T 2wv3_A 168 EYECNATNSIGSASVSTVL 186 (190)
T ss_dssp EEEEEEECSSCEEEEEEEE
T ss_pred EEEEEEEecCCcceeEEEE
Confidence 9999999999988776654
No 48
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.58 E-value=1.2e-13 Score=65.59 Aligned_cols=85 Identities=18% Similarity=0.356 Sum_probs=61.8
Q ss_pred ecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
..+..+.+..|+++.|.|.+.+.+.+.+.|++.+..... ...++...... .....|.|.+++..|+|.|
T Consensus 6 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~~~DsG~Y 81 (124)
T 3rbg_A 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHS----ANQLSITVPNVTLQDEGVY 81 (124)
T ss_dssp CSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEE----TTEEEEEESSCCGGGCEEE
T ss_pred CCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCC----CCEEEEEECCCChHHCEEE
Confidence 445667889999999999999989999999976554332 22333332100 0246899999999999999
Q ss_pred EEEEecCCCceEEEEEe
Q psy4613 79 KCIAKNSLGEVESSIRL 95 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~l 95 (96)
.|.+.+. |.......|
T Consensus 82 ~C~a~n~-g~~~~~~~l 97 (124)
T 3rbg_A 82 KCLHYSD-SVSTKEVKV 97 (124)
T ss_dssp EEEEESS-SEEEEEEEE
T ss_pred EEEEEcC-CCCcEEEEE
Confidence 9999998 766655543
No 49
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.58 E-value=1.6e-13 Score=62.86 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=55.6
Q ss_pred CeEEecCce-eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQL-VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+..++.. +.+..|+.+.|.|.+. .|.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 2yuv_A 8 AAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIR-PSTKYIFEHKG-----CQRILFINNCQMTDDSEYYV 80 (100)
T ss_dssp CCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCC-CBTTEEEEEET-----TEEEEEEEEECTTTCCEEEE
T ss_pred CeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECC-CCCCEEEEecC-----CEEEEEEcCCCcCcCEEEEE
Confidence 555555544 6788999999999998 6888999999876553 33455443311 23579999999999999999
Q ss_pred EE
Q psy4613 81 IA 82 (96)
Q Consensus 81 ~~ 82 (96)
.+
T Consensus 81 ~a 82 (100)
T 2yuv_A 81 TA 82 (100)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 50
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.57 E-value=2.4e-13 Score=68.52 Aligned_cols=88 Identities=28% Similarity=0.428 Sum_probs=67.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+.+.+.+.|++++..+. ...++...... ....|.|.++...|.|.|.|
T Consensus 7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C 80 (197)
T 3lcy_A 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELI-QSRKYKMSSDG-----RTHTLTVMTEEQEDEGVYTC 80 (197)
T ss_dssp EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEEC-CCSSEEEEESS-----SEEEEEEECCSGGGCEEEEE
T ss_pred CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECC-CCccEEEEeCC-----CEEEEEEecCCccCCEEEEE
Confidence 3666677777889999999999999998889999999865543 33444433211 23579999999999999999
Q ss_pred EEecCCCceEEEEE
Q psy4613 81 IAKNSLGEVESSIR 94 (96)
Q Consensus 81 ~~~~~~g~~~~~~~ 94 (96)
.+.+..|.......
T Consensus 81 ~~~n~~~~~~~~~~ 94 (197)
T 3lcy_A 81 IATNEVGEVETSSK 94 (197)
T ss_dssp EEECSSCEEEEEEE
T ss_pred EEECCCCceeEEEE
Confidence 99998887655543
No 51
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.57 E-value=2.2e-13 Score=72.80 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=69.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....++....... ....|.|.+++..|.|.|.|
T Consensus 4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C 79 (305)
T 2nzi_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----GYHQLIIASVTDDDATVYQV 79 (305)
T ss_dssp CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETT----TEEEEEESSCCGGGCSEEEE
T ss_pred CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCC----CEEEEEEccCChhhCeEEEE
Confidence 57777777888899999999999999999999999998766543333444332111 23579999999999999999
Q ss_pred EEecCCCceEEEEE
Q psy4613 81 IAKNSLGEVESSIR 94 (96)
Q Consensus 81 ~~~~~~g~~~~~~~ 94 (96)
.+.|..|.......
T Consensus 80 ~a~n~~g~~~~~~~ 93 (305)
T 2nzi_A 80 RATNQGGSVSGTAS 93 (305)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEcCCCCccceEE
Confidence 99998887655544
No 52
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=65.79 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=60.1
Q ss_pred cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
++..+.+..|..+.|.|.+.+.+ +.+.|++++..+. ...++.+. ...|.|.++...|.|.|.|.+.|..
T Consensus 9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~-~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~ 77 (99)
T 2cr3_A 9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLA-ESNRTRIT---------GEEVEVQDSVPADSGLYACVTSSPS 77 (99)
T ss_dssp CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCC-CCSSEEEC---------SSEEEETTCCTTTCEEEEEEEEETT
T ss_pred CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECC-CCCcEEEE---------CCEEEEccCCHHHCEEEEEEEEeCC
Confidence 34556788999999999999876 7999999875543 22333322 2479999999999999999999998
Q ss_pred CceEEEEEe
Q psy4613 87 GEVESSIRL 95 (96)
Q Consensus 87 g~~~~~~~l 95 (96)
|.....+.|
T Consensus 78 g~~~~~~~l 86 (99)
T 2cr3_A 78 GSDTTYFSV 86 (99)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEE
Confidence 887666654
No 53
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.57 E-value=3.4e-13 Score=68.72 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=64.7
Q ss_pred cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
.+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++...... . ....|.|.++...|.|.|.|.+.|..
T Consensus 123 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-~~~~~~~~~~~--~--~~~~L~i~~~~~~d~G~Y~C~a~N~~ 197 (212)
T 2r15_A 123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA-QTDHCNLKFEA--G--RTAYFTINGVSTADSGKYGLVVKNKY 197 (212)
T ss_dssp CCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEEC-CCSSEEEEEET--T--TEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECc-cCCCEEEEEcC--C--CEEEEEEcCcchHHCeEEEEEEEcCC
Confidence 3455678899999999999999999999999865543 33444443311 0 23589999999999999999999999
Q ss_pred CceEEEEEe
Q psy4613 87 GEVESSIRL 95 (96)
Q Consensus 87 g~~~~~~~l 95 (96)
|.....+.|
T Consensus 198 g~~~~~~~l 206 (212)
T 2r15_A 198 GSETSDFTV 206 (212)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 987766654
No 54
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.3e-14 Score=65.50 Aligned_cols=90 Identities=16% Similarity=0.144 Sum_probs=62.9
Q ss_pred ecCceeeecCCCcEEEEEEeeec---ccceeEEeeccceeEe--cccceEEEEe-ccccceEEEEEEEccCCCCCCeeEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVI--SSERYEVESI-SRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
..+..+.+..|+.+.|.|.+.+. |.|.+.|+++.-.... ...++.+... ..........|.|.++...|+|.|.
T Consensus 17 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 96 (118)
T 2edn_A 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYR 96 (118)
T ss_dssp BCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEE
T ss_pred ECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEE
Confidence 34567789999999999999874 7889999996311111 1223333211 1111112478999999999999999
Q ss_pred EEEecCCCceEEEEEe
Q psy4613 80 CIAKNSLGEVESSIRL 95 (96)
Q Consensus 80 c~~~~~~g~~~~~~~l 95 (96)
|.+.|..|...+.+.|
T Consensus 97 Cevsn~~g~~s~~~~L 112 (118)
T 2edn_A 97 LEVKAKDTCDSCGFNI 112 (118)
T ss_dssp EEEECSSCEEEEEECC
T ss_pred EEEEEcCCcEEEEEEE
Confidence 9999999987777654
No 55
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.56 E-value=8.2e-13 Score=62.42 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=59.4
Q ss_pred cCceeeecCCCcEEEEEEeeecc--cceeEEeeccceeEe----cccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQGDMVI----SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
++..+.+..|+.+.|.|.+.+.+ .+.+.|++++..... ......... .........|.|.+++..|+|.|.|
T Consensus 14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C 91 (122)
T 3s35_X 14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG--SEMKKFLSTLTIDGVTRSDQGLYTC 91 (122)
T ss_dssp SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEE--TTEEEEEEEEEESSCCGGGCEEEEE
T ss_pred CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccC--CceeeEEEEEEECCCCcccCEEEEE
Confidence 44555788999999999999844 467899987653210 111111100 0001134679999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 92 ~a~n~~g~~~~~~~l 106 (122)
T 3s35_X 92 AASSGLMTKKNSTFV 106 (122)
T ss_dssp EEECSSCEEEEEEEE
T ss_pred EEccCCCceEEEEEE
Confidence 999999987766554
No 56
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.56 E-value=1.3e-13 Score=69.43 Aligned_cols=87 Identities=23% Similarity=0.265 Sum_probs=65.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.++...|.|.|.|.+
T Consensus 105 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a 178 (194)
T 2a38_A 105 NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ-SSLDFQISQEG-----DLYSLLIAEAYPEDSGTYSVNA 178 (194)
T ss_dssp EEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECC-CSSSEEEEEET-----TEEEEEEEEECGGGCEEEEEEE
T ss_pred EEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECC-CCCcEEEEEcC-----CEEEEEECCCChhcCeEEEEEE
Confidence 33444455668889999999999999999999999876543 33444333211 2347899999999999999999
Q ss_pred ecCCCceEEEEEe
Q psy4613 83 KNSLGEVESSIRL 95 (96)
Q Consensus 83 ~~~~g~~~~~~~l 95 (96)
.|..|.....+.|
T Consensus 179 ~n~~g~~~~~~~l 191 (194)
T 2a38_A 179 TNSVGRATSTAEL 191 (194)
T ss_dssp EETTEEEEEEEEE
T ss_pred EeCCCceEEEEEE
Confidence 9999987776655
No 57
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.56 E-value=3.3e-13 Score=62.57 Aligned_cols=87 Identities=18% Similarity=0.382 Sum_probs=60.5
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccceeEecccceEEEEeccc---cceEEEEEEEccCCCCCC
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQGDMVISSERYEVESISRS---IFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~ 75 (96)
+|.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++..+.. ............ .......|.|.++...|.
T Consensus 10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 88 (112)
T 3so5_A 10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD-AEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88 (112)
T ss_dssp SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTT-CEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCccccc-ccccceeeeeccCCCccccceEEEEeccccccC
Confidence 46777777777899999999999998654 578999998654421 110000110000 001246899999999999
Q ss_pred eeEEEEEecCCCc
Q psy4613 76 GSYKCIAKNSLGE 88 (96)
Q Consensus 76 g~y~c~~~~~~g~ 88 (96)
|.|.|.+.|..|.
T Consensus 89 G~Y~C~a~n~~g~ 101 (112)
T 3so5_A 89 GXYQCVISNHFGS 101 (112)
T ss_dssp EEEEEEEEETTEE
T ss_pred CeEEEEEEeCCCc
Confidence 9999999998886
No 58
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.56 E-value=8e-14 Score=64.46 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=53.2
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
..+.+..|+.+.|.|.+ +.+.+.+.|++++..+.....++.+.... ....|.|.++...|.|.|.|.+.+
T Consensus 24 ~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~~ 93 (104)
T 1pd6_A 24 PAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIG-----AKRTLTISQCSLADDAAYQCVVGG 93 (104)
T ss_dssp SEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEET-----TEEEEEECSCSSSSCEEEEEEETT
T ss_pred CcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecC-----CEEEEEECCCCcccCEEEEEEECC
Confidence 44778999999999999 67888999999876654221455443211 235899999999999999999854
No 59
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.55 E-value=8.9e-14 Score=63.16 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=58.9
Q ss_pred cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
++....+..|+.+.|.|.+.+ .|.+.|++++..+. ...++... ...|.|.++...|.|.|.|.+.|..
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~-~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~ 74 (95)
T 4hwu_A 7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLG-PNNRTVLI---------GEYLQIKGATPRDSGLYACTAARTV 74 (95)
T ss_dssp -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEEC-CCSSEEEE---------TTEEEECSCCGGGCEEEEEEEECSS
T ss_pred CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECC-CCceEEEe---------CCEEEECcCCcccCEEEEEEEccCC
Confidence 456677899999999999886 57899999865543 33343332 2469999999999999999999999
Q ss_pred CceEEEEEe
Q psy4613 87 GEVESSIRL 95 (96)
Q Consensus 87 g~~~~~~~l 95 (96)
|.....+.|
T Consensus 75 g~~~~~~~l 83 (95)
T 4hwu_A 75 DSETWIFMV 83 (95)
T ss_dssp CEEEEEEEE
T ss_pred CcEEEEEEE
Confidence 877666544
No 60
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.55 E-value=4.3e-14 Score=72.30 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=56.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec---ccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS---SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+...+....+..|+.+.|.|.+.|.|.|.+.|+++++..... ..++.... + +....+.+.+++..|.|.|.|
T Consensus 109 ~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~---~--g~l~il~i~~v~~~D~G~YtC 183 (203)
T 4fa8_A 109 LSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK---D--GSLSVAVDLSLPKPWHLPVTC 183 (203)
T ss_dssp EEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT---T--SCEEEEEEEEECSSCCCCEEE
T ss_pred eeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC---C--CCEEEEEECCCCHHHCEEEEE
Confidence 333445566788999999999999999999998875544321 12222211 1 123456667899999999999
Q ss_pred EEecCCCceEEE
Q psy4613 81 IAKNSLGEVESS 92 (96)
Q Consensus 81 ~~~~~~g~~~~~ 92 (96)
.+.|..|.....
T Consensus 184 ~A~N~~G~a~~v 195 (203)
T 4fa8_A 184 VGKNDKEEAHGV 195 (203)
T ss_dssp EEESSSCEEEEE
T ss_pred EEEcCCCEEEEE
Confidence 999999987654
No 61
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.55 E-value=2.5e-13 Score=68.38 Aligned_cols=89 Identities=25% Similarity=0.328 Sum_probs=66.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+..++....+..|+.+.|.|.+.+.+.+.+.|++++..+.... .+....... ....|.|.+++..|.|.|.
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~ 79 (194)
T 2a38_A 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD-----GRAKLTIPAVTKANSGRYS 79 (194)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEET-----TEEEEEESSCCGGGCEEEE
T ss_pred CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCC-----CEEEEEECCCCcccCEEEE
Confidence 3667777778889999999999999998989999999876543221 123322211 2467999999999999999
Q ss_pred EEEecCCCceEEEEE
Q psy4613 80 CIAKNSLGEVESSIR 94 (96)
Q Consensus 80 c~~~~~~g~~~~~~~ 94 (96)
|.+.+..|.......
T Consensus 80 C~~~n~~~~~~~~~~ 94 (194)
T 2a38_A 80 LKATNGSGQATSTAE 94 (194)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEcCCceEeEEEE
Confidence 999998876555443
No 62
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-13 Score=62.00 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=55.2
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+..++....+..|+.+.|.|.+.+. |.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.
T Consensus 20 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
T 2edh_A 20 IKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLR-DGDRHSLRQDG-----ARCELQIRGLVAEDAGEYLCM 91 (113)
T ss_dssp CCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCC-CSSSEEEEEET-----TEEEEEECSCCSTTCEEEEEE
T ss_pred CcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECC-CCCcEEEEECC-----CEEEEEECCCChhhCEEEEEE
Confidence 455556667788999999999998664 7899999876553 34555544311 235799999999999999999
Q ss_pred E
Q psy4613 82 A 82 (96)
Q Consensus 82 ~ 82 (96)
+
T Consensus 92 a 92 (113)
T 2edh_A 92 C 92 (113)
T ss_dssp E
T ss_pred e
Confidence 8
No 63
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.55 E-value=5.9e-13 Score=66.68 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=65.5
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEee---ccceeEec--ccceEEEEeccccceEEEEEEEccCC-CCC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVR---DQGDMVIS--SERYEVESISRSIFDFKMRLTIKKIT-KYD 74 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d 74 (96)
|.+...+....+..|..+.|.|.+.+.| .+.+.|++ ++...... ..++.+.... ....|.|.++. ..|
T Consensus 84 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~~d 158 (184)
T 3b5h_A 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ-----GRSELHIENLNMEAD 158 (184)
T ss_dssp CCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET-----TEEEEEECSCCTTTS
T ss_pred CceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecC-----CeeEEEEeecccccc
Confidence 4444455556788899999999999988 78999999 44443322 2344433211 23679999999 899
Q ss_pred CeeEEEEEecCCCceEEEEEe
Q psy4613 75 LGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 75 ~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.|.+.|..|.....+.|
T Consensus 159 ~G~Y~C~a~N~~g~~~~~~~l 179 (184)
T 3b5h_A 159 PGQYRCNGTSSKGSDQAIITL 179 (184)
T ss_dssp SEEEEEEEEETTEEEEEEEEE
T ss_pred CceEEEEEEeCCCcceEEEEE
Confidence 999999999999988777655
No 64
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.55 E-value=7.2e-14 Score=77.05 Aligned_cols=83 Identities=24% Similarity=0.428 Sum_probs=65.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
.+........+..|..+.|.|.+.+.|.|.+.|++++..+. ...++... ...|.|..+...|.|.|.|.+
T Consensus 297 ~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~A 366 (384)
T 3kld_A 297 NWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL-TRDRIQIE---------QGTLNITIVNLSDAGMYQCVA 366 (384)
T ss_dssp EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECC-CBTTEEEE---------TTEEEESSCCGGGCEEEEEEE
T ss_pred ccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECC-CCccEEEe---------CCEEEEeecChhhCEEEEEEE
Confidence 33344455678889999999999999999999999876553 33444332 247899999999999999999
Q ss_pred ecCCCceEEEEEe
Q psy4613 83 KNSLGEVESSIRL 95 (96)
Q Consensus 83 ~~~~g~~~~~~~l 95 (96)
.|..|.......|
T Consensus 367 ~N~~G~~~~~a~L 379 (384)
T 3kld_A 367 ENKHGVIFSSAEL 379 (384)
T ss_dssp EETTEEEEEEEEE
T ss_pred EeCCceEEeceEE
Confidence 9999988777655
No 65
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.55 E-value=2.6e-13 Score=69.43 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=65.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCC-CCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT-KYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ..+......... ....|.|.++. ..|.|.|.
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~--~~~~~~~~~~~~---~~~~L~i~~v~~~~d~G~Y~ 80 (212)
T 2yd6_A 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVS--NQRFEVIEFDDG---SGSVLRIQPLRTPRDEAIYE 80 (212)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECC--CTTEEEEEEGGG---TEEEEEECSCCTTTTCEEEE
T ss_pred CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCC--CCceeEEEEcCC---CceEEEEeccCCCCCCeEEE
Confidence 3667777777889999999999999998999999999876543 222222211111 23679999994 99999999
Q ss_pred EEEecCCCceEEEEE
Q psy4613 80 CIAKNSLGEVESSIR 94 (96)
Q Consensus 80 c~~~~~~g~~~~~~~ 94 (96)
|.+.+..|.....+.
T Consensus 81 C~a~n~~g~~~~~~~ 95 (212)
T 2yd6_A 81 CVASNNVGEISVSTR 95 (212)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEcCCCcEEEEEE
Confidence 999998887555443
No 66
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.55 E-value=2.4e-13 Score=72.00 Aligned_cols=86 Identities=24% Similarity=0.453 Sum_probs=65.4
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.++...|.|.|.|.+.
T Consensus 195 ~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~ 268 (284)
T 2rik_A 195 FRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR-SGKKYKIMSEN-----FLTSIHILNVDSADIGEYQCKAS 268 (284)
T ss_dssp CCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEEC-BTTTEEEEEET-----TEEEEEECSCCGGGCEEEEEEEE
T ss_pred ceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECc-CCCCEEEEEcC-----CEEEEEEcCCCcccCEEEEEEEE
Confidence 3334445667889999999999999999999999876553 33444433211 23578999999999999999999
Q ss_pred cCCCceEEEEEe
Q psy4613 84 NSLGEVESSIRL 95 (96)
Q Consensus 84 ~~~g~~~~~~~l 95 (96)
|..|.....+.|
T Consensus 269 N~~G~~~~~~~l 280 (284)
T 2rik_A 269 NDVGSYTCVGSI 280 (284)
T ss_dssp ETTEEEEEEEEE
T ss_pred eCCCceeEEEEE
Confidence 999988777655
No 67
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.54 E-value=6.1e-13 Score=70.48 Aligned_cols=88 Identities=24% Similarity=0.398 Sum_probs=67.8
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.+++..|.|.|.|
T Consensus 5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C 78 (284)
T 2rik_A 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR-PGGNYKMTLVE-----NTATLTVLKVTKGDAGQYTC 78 (284)
T ss_dssp CCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECc-CCCcEEEEEcC-----CEEEEEEecCCcccCEEEEE
Confidence 5777777788889999999999999998889999999876543 33343332211 24679999999999999999
Q ss_pred EEecCCCceEEEEE
Q psy4613 81 IAKNSLGEVESSIR 94 (96)
Q Consensus 81 ~~~~~~g~~~~~~~ 94 (96)
.+.+..|.......
T Consensus 79 ~~~n~~g~~~~~~~ 92 (284)
T 2rik_A 79 YASNVAGKDSCSAQ 92 (284)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCceEEEEEE
Confidence 99998876554443
No 68
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.54 E-value=1.1e-13 Score=63.68 Aligned_cols=74 Identities=22% Similarity=0.320 Sum_probs=56.1
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
+..++..+.+..|+.+.|.|.+.+ +.+.+.|++++..+. ... ++.+.... ....|.|.++...|.|.|.|.
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~-~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~ 82 (103)
T 1x44_A 10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEII-PGPKSRYRIRVEG-----KKHILIIEGATKADAAEYSVM 82 (103)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECC-CSTTCSEEEEEET-----TEEEEEEEEECTTTCSEEEEE
T ss_pred eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECC-CCCceEEEEEEcC-----CEEEEEECCCCcccCEEEEEE
Confidence 445556678899999999999977 678999999876553 223 44443311 236799999999999999999
Q ss_pred Eec
Q psy4613 82 AKN 84 (96)
Q Consensus 82 ~~~ 84 (96)
+.|
T Consensus 83 a~n 85 (103)
T 1x44_A 83 TTG 85 (103)
T ss_dssp ETT
T ss_pred ECC
Confidence 987
No 69
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-14 Score=65.56 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=56.6
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
.+..++....+..|+.+.|.|.+.+.+.+ .+.|++++..+. ...++.+.... ....|.|.++...|+|.|.|.
T Consensus 10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~-~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 83 (104)
T 2eny_A 10 GITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-SSSRFQATRQG-----RKYILVVREAAPSDAGEVVFS 83 (104)
T ss_dssp CCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCS-BCSSCEEEEET-----TEEEEEECSCCTTTCSCEEEE
T ss_pred EEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECC-CCCCEEEEEcC-----CEEEEEECCCCHHHCEEEEEE
Confidence 34455567789999999999999887644 799999876553 33455443311 245799999999999999998
Q ss_pred Eec
Q psy4613 82 AKN 84 (96)
Q Consensus 82 ~~~ 84 (96)
+.+
T Consensus 84 a~~ 86 (104)
T 2eny_A 84 VRG 86 (104)
T ss_dssp ETT
T ss_pred ECC
Confidence 755
No 70
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=65.67 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=59.4
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-c--ceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-E--RYEVESISRSIFDFKMRLTIKKITKYDLGS 77 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 77 (96)
+|.+..++....+..|+.+.|.|.+.+.+ +.+.|++++..+.... . ++.+.... ....|.|.++...|.|.
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~ 81 (101)
T 2edk_A 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDG-----KRHILIFSDVVQEDRGR 81 (101)
T ss_dssp CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECS-----SEEEEECSSCCGGGCSB
T ss_pred CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECC-----CEEEEEECCCChhhCEE
Confidence 35566666778899999999999999888 9999999876553221 1 33443211 24679999999999999
Q ss_pred EEEEEecC
Q psy4613 78 YKCIAKNS 85 (96)
Q Consensus 78 y~c~~~~~ 85 (96)
|.|.+.|.
T Consensus 82 Y~C~a~n~ 89 (101)
T 2edk_A 82 YQVITNGG 89 (101)
T ss_dssp EEEECSSC
T ss_pred EEEEEcCC
Confidence 99998873
No 71
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.54 E-value=5.6e-13 Score=62.72 Aligned_cols=77 Identities=26% Similarity=0.292 Sum_probs=56.6
Q ss_pred CcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 17 ~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
....+.|.+.|.|.|.+.|++++..+. ...+........ .......|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l 97 (118)
T 1wwc_A 21 LEHCIEFVVRGNPPPTLHWLHNGQPLR-ESKIIHVEYYQE-GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97 (118)
T ss_dssp CEEEEEEEEECSSCCEEEEEETTEECC-CSSSEEEEEEEC-SSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEeeeeCCCeEEEEECCEECC-CCCceeEEEecc-CccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEE
Confidence 567889999999999999999876554 223333221111 01134689999999999999999999999988877664
No 72
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.53 E-value=1.8e-13 Score=62.99 Aligned_cols=75 Identities=13% Similarity=0.272 Sum_probs=56.7
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+..++..+.+..|+.+.|.|.+.+.+.+ +.|++++..+. ...++.+.... ....|.|.+++..|.|.|.|.
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2e7b_A 9 VRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLR-PGDKYSLRQEG-----AMLELVVRNLRPQDSGRYSCS 81 (103)
T ss_dssp CCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCC-CSSSEEEEECS-----SEEEEEECSCCTTTCCCEEEE
T ss_pred CEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECC-CCCcEEEEEcC-----CEEEEEEccCCcccCEEEEEE
Confidence 445555667789999999999999998888 99999866553 33455444321 345799999999999999998
Q ss_pred Ee
Q psy4613 82 AK 83 (96)
Q Consensus 82 ~~ 83 (96)
..
T Consensus 82 ~g 83 (103)
T 2e7b_A 82 FG 83 (103)
T ss_dssp CS
T ss_pred EC
Confidence 43
No 73
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=68.10 Aligned_cols=89 Identities=24% Similarity=0.310 Sum_probs=58.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+..... +....... +.......+.+.++...|.|.|
T Consensus 9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~v~~~D~G~Y 87 (117)
T 2v9t_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP-SGSLFFLRIVHGRKSRPDEGVY 87 (117)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECT-TSCEEESSCCCBTTBCSSCEEE
T ss_pred CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEec-CCcEEEEEEEeCCCCcCcCEEE
Confidence 36677777778899999999999999999999999998765432211 11111101 1100011122225578999999
Q ss_pred EEEEecCCCceE
Q psy4613 79 KCIAKNSLGEVE 90 (96)
Q Consensus 79 ~c~~~~~~g~~~ 90 (96)
.|.+.|..|...
T Consensus 88 ~C~a~N~~G~~~ 99 (117)
T 2v9t_A 88 VCVARNYLGEAV 99 (117)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEeCccceE
Confidence 999999998754
No 74
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.53 E-value=4.1e-13 Score=77.31 Aligned_cols=87 Identities=31% Similarity=0.516 Sum_probs=68.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+..+...+.+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.++...|.|.|.|
T Consensus 5 pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 78 (570)
T 3b43_A 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLR-SAPAYKMQFKN-----NVASLVINKVDHSDVGEYTC 78 (570)
T ss_dssp CCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCC-CCSSEEEECCT-----TEEEEEESSCCGGGCEEEEE
T ss_pred CCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEcc-CCCCEEEEEEC-----CEEEEEEccCChhhCEEEEE
Confidence 5777778888889999999999999999999999999876653 23344332211 23679999999999999999
Q ss_pred EEecCCCceEEEE
Q psy4613 81 IAKNSLGEVESSI 93 (96)
Q Consensus 81 ~~~~~~g~~~~~~ 93 (96)
.+.|..|......
T Consensus 79 ~a~N~~g~~~~~~ 91 (570)
T 3b43_A 79 KAENSVGAVASSA 91 (570)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEeCCceEEEEE
Confidence 9999988655443
No 75
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=99.53 E-value=3.9e-13 Score=77.42 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=68.5
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+........+..|..+.|.|.+.+.|.+.+.|++++..+.....+..+.... ....|.|..+...|+|.|.|.
T Consensus 478 P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~ 552 (570)
T 3b43_A 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSE-----NIATLQFSRAEPANAGKYTCQ 552 (570)
T ss_dssp CEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCS-----SEEEEEESSCCTTCCEEEEEE
T ss_pred CcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECC-----CEEEEEECcCCHHHCEEEEEE
Confidence 555555556677889999999999999999999999865554333443332111 246899999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|...+...|
T Consensus 553 a~N~~G~~~~~a~L 566 (570)
T 3b43_A 553 IKNEAGTQECFATL 566 (570)
T ss_dssp EECSSCEEEEEEEE
T ss_pred EEECCcEEEEEEEE
Confidence 99999998887766
No 76
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.53 E-value=2.2e-12 Score=68.45 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=65.8
Q ss_pred CeEEecCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|..+.|.|.+.+ .|.+.+.|++++..+... ... ............|.|.++...|.|.|.|
T Consensus 187 p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~-~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 262 (289)
T 3ejj_X 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP-LNS---DFQDNYYKKVRALSLNAVDFQDAGIYSC 262 (289)
T ss_dssp CEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC-EEE---EECSSSEEEEEEEEESSCCSSSCEEEEE
T ss_pred CeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc-CCc---ccccceEEeeEEEEEEeecccCCEEEEE
Confidence 44555555556678999999999998 688899999986554211 110 0011111235789999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|....++.|
T Consensus 263 ~a~N~~G~~~~s~~L 277 (289)
T 3ejj_X 263 VASNDVGTRTATMNF 277 (289)
T ss_dssp EEECSSCEEEEEEEE
T ss_pred EEEcCCCCccccEEE
Confidence 999999999888876
No 77
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.52 E-value=7.6e-13 Score=70.31 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=60.4
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+..|+.+.|.|.+.+.|.+.+.|++++.......... ..............|.|.++...|.|.|.|.+.|..|.
T Consensus 189 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 267 (289)
T 3mjg_X 189 VQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV-TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267 (289)
T ss_dssp SCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCE-EEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTT
T ss_pred CcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccccc-ccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCC
Confidence 33557889999999999999999999997643321111111 11111101224578999999999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
......|
T Consensus 268 ~~~~~~l 274 (289)
T 3mjg_X 268 HQDEKAI 274 (289)
T ss_dssp EEEEEEE
T ss_pred ceeEEEE
Confidence 7776654
No 78
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.52 E-value=1.1e-13 Score=70.72 Aligned_cols=81 Identities=28% Similarity=0.506 Sum_probs=62.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+.....++... ...|.|.++...|.|.|.|.
T Consensus 111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~ 181 (212)
T 2yd1_A 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK---------DGFLQIENSREEDQGKYECV 181 (212)
T ss_dssp CEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE---------TTEEEECSCCGGGCEEEEEE
T ss_pred CeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc---------CCeEEEccCChhhCEEEEEE
Confidence 455555556677889999999999999999999999876554323343322 24799999999999999999
Q ss_pred EecCCCceEE
Q psy4613 82 AKNSLGEVES 91 (96)
Q Consensus 82 ~~~~~g~~~~ 91 (96)
+.|..|....
T Consensus 182 a~N~~G~~~s 191 (212)
T 2yd1_A 182 AENSMGTEHS 191 (212)
T ss_dssp EEETTEEEEC
T ss_pred eecCCCceeE
Confidence 9999987653
No 79
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.5e-15 Score=67.10 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=56.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+... ....|.|.++...|.|.|.|.
T Consensus 11 ~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~ 75 (96)
T 2ens_A 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------------PSPVLILPEIGPQDQGTYSCV 75 (96)
T ss_dssp CCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC---------------CCSEEEEESCCTTTCEEEECE
T ss_pred CEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC---------------CCCEEEECCCCcccCEEEEEE
Confidence 34445555566889999999999999899999999986544211 124688999999999999999
Q ss_pred EecCCCc
Q psy4613 82 AKNSLGE 88 (96)
Q Consensus 82 ~~~~~g~ 88 (96)
+.|..+.
T Consensus 76 a~n~~~~ 82 (96)
T 2ens_A 76 ATHSSHG 82 (96)
T ss_dssp ECCSSCC
T ss_pred EEeCCCC
Confidence 9996553
No 80
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.51 E-value=1.2e-13 Score=69.47 Aligned_cols=80 Identities=33% Similarity=0.530 Sum_probs=62.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++++..+.....++..... ...|.|.+++..|.|.|.|.
T Consensus 8 P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~ 80 (192)
T 2iep_A 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN-------GQLLTILSVEDSDDGIYCCT 80 (192)
T ss_dssp EEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGG-------GTEEEESSCCGGGCEEEEEE
T ss_pred ceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCC-------ccEEEEcCCCcccCeEEEEE
Confidence 56666677788899999999999999888999999986655433344443321 13689999999999999999
Q ss_pred EecCCCc
Q psy4613 82 AKNSLGE 88 (96)
Q Consensus 82 ~~~~~g~ 88 (96)
+.+..|.
T Consensus 81 ~~~~~~~ 87 (192)
T 2iep_A 81 ANNGVGG 87 (192)
T ss_dssp EECSSSC
T ss_pred EEcCCCc
Confidence 9998776
No 81
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.51 E-value=2.6e-12 Score=68.31 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=65.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccce-eEEeecccee---EecccceEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDM---VISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 77 (96)
|.+...+....+..|+.+.|.|.+.+.|.+. +.|++++... ........... .........|.|.++...|.|.
T Consensus 189 P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~ 266 (290)
T 2o26_X 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRG--DFNYERQETLTISSARVDDSGV 266 (290)
T ss_dssp CEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEE--TTEEEEEEEEEESSCCSSSCEE
T ss_pred CccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccC--ceeeEEEEEEEEcCCCcccCeE
Confidence 4555455555788899999999999999986 9999987653 11111111110 0011145789999999999999
Q ss_pred EEEEEecCCCceEEEEEe
Q psy4613 78 YKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 78 y~c~~~~~~g~~~~~~~l 95 (96)
|.|.+.|..|.....+.|
T Consensus 267 Y~C~a~N~~g~~~~~~~l 284 (290)
T 2o26_X 267 FMCYANNTFGSANVTTTL 284 (290)
T ss_dssp EEEEEECSSCEEEEEEEE
T ss_pred EEEEEeCCCCcEEEEEEE
Confidence 999999999988777665
No 82
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.1e-13 Score=62.15 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=54.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|..+.|.|. .+.+.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.
T Consensus 9 p~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2dku_A 9 NCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELR-ASGKHQPSQEG-----LTLRLTISALEKADSDTYTCD 81 (103)
T ss_dssp CCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCC-SSSSEEEEEET-----TEEEEEEESCCTTTCSEEEEE
T ss_pred CEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECC-CCCeEEEEeCC-----CEEEEEECCCCcccCEEEEEE
Confidence 44555567778999999999999 477888999999876543 33455443211 235799999999999999998
No 83
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.51 E-value=1.2e-12 Score=66.95 Aligned_cols=84 Identities=25% Similarity=0.308 Sum_probs=61.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec--ccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS--SERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+... ..++...... ....|.|.++...|.|.|.
T Consensus 109 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~ 183 (212)
T 2yd6_A 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSE-----SIGALQIEQSEESDQGKYE 183 (212)
T ss_dssp CEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEET-----TEEEEEECSCCGGGCEEEE
T ss_pred ceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecC-----CeEEEEEcCCCcccCEEEE
Confidence 44555555567788999999999999999999999987655422 1232222111 2478999999999999999
Q ss_pred EEEecCCCceE
Q psy4613 80 CIAKNSLGEVE 90 (96)
Q Consensus 80 c~~~~~~g~~~ 90 (96)
|.+.|..|...
T Consensus 184 C~a~N~~G~~~ 194 (212)
T 2yd6_A 184 CVATNSAGTRY 194 (212)
T ss_dssp EEEEETTEEEE
T ss_pred EEEECCCCccc
Confidence 99999988654
No 84
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.49 E-value=9e-13 Score=61.08 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=56.4
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+. +.+.|++++..+. ...++.+.... ....|.|.+++..|.|.|.|
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 79 (108)
T 2dm7_A 8 PARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLR-DGGRYSLKQDG-----TRCELQIHDLSVADAGEYSC 79 (108)
T ss_dssp CCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCC-SSSSCEEEEET-----TEEEEEESSCCTTTCSEEEE
T ss_pred CCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECC-CCCCEEEEecC-----CEEEEEECCCCcccCEEEEE
Confidence 3555556677788999999999998764 7899999866543 33455443311 23569999999999999999
Q ss_pred EEec
Q psy4613 81 IAKN 84 (96)
Q Consensus 81 ~~~~ 84 (96)
.+.+
T Consensus 80 ~a~n 83 (108)
T 2dm7_A 80 MCGQ 83 (108)
T ss_dssp EETT
T ss_pred EEcC
Confidence 9855
No 85
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.49 E-value=1.4e-12 Score=69.75 Aligned_cols=77 Identities=25% Similarity=0.411 Sum_probs=61.3
Q ss_pred eeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 11 VGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
..+..|..+.|.|.+.+.|.+ .+.|++++..+.. ..++.... ....|.|.++...|.|.|.|.+.|..|..
T Consensus 231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~-~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~ 302 (312)
T 2y23_A 231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISV-DEKHDFKD-------GICTLLITEFSKKDAGIYEVILKDDRGKD 302 (312)
T ss_dssp EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEE-ECCC-----------CEEEEEECSCSGGGCEEEEEEEESTTCCE
T ss_pred EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCC-CCcEEEEC-------CEEEEEECcCCHHHCEEEEEEEEcCCCce
Confidence 567899999999999999888 9999998765542 33333321 24689999999999999999999999998
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
...+.|
T Consensus 303 ~~~~~l 308 (312)
T 2y23_A 303 KSRLKL 308 (312)
T ss_dssp EEEEEE
T ss_pred eeeeEE
Confidence 887765
No 86
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.49 E-value=8e-13 Score=66.72 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=62.1
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEcc-CCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKK-ITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..|..+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.+ +...|.|.|.|.+.|..|.
T Consensus 113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~ 186 (197)
T 2j8h_A 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-NNGHYQVIVTR-----SFTSLVFPNGVERKDAGFYVVCAKNRFGI 186 (197)
T ss_dssp EEEEETTCCCEEEEEEEEESCCEEEEEESSCEEC-SSSSCEEEECS-----SEEEEECTTCCCGGGCEEEEEEEEETTEE
T ss_pred eEEEeCCCEEEEEEEEEecCCCcEEEEECCEEee-cCCCEEEEEcC-----CceEEEEeCCCCcccCEeEEEEEEeCCCc
Confidence 3557789999999999999999999999865543 33444433211 246789999 9999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 187 ~~~~~~l 193 (197)
T 2j8h_A 187 DQKTVEL 193 (197)
T ss_dssp EEEEEEE
T ss_pred EeEEEEE
Confidence 7776654
No 87
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.48 E-value=4.8e-13 Score=73.46 Aligned_cols=84 Identities=30% Similarity=0.438 Sum_probs=65.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++... ...|.|.++...|.|.|.|.
T Consensus 295 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~ 364 (382)
T 1cs6_A 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-SQNRIEVS---------GGELRFSKLVLEDSGMYQCV 364 (382)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECC-CCSSEEEE---------TTEEEESSCCGGGCEEEEEE
T ss_pred CCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECC-CCceEEEE---------CCEEEECcCCcccCEEEEEE
Confidence 344444455678889999999999999999999999876543 33343332 24699999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 365 a~N~~G~~~~~~~l 378 (382)
T 1cs6_A 365 AENKHGTVYASAEL 378 (382)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEeCCCeEEEEEEE
Confidence 99999988777665
No 88
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.48 E-value=3.8e-12 Score=70.02 Aligned_cols=89 Identities=27% Similarity=0.322 Sum_probs=65.1
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeec--cceeEec----ccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD--QGDMVIS----SERYEVESISRSIFDFKMRLTIKKITKYD 74 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 74 (96)
+|.+..+.. ..+..|+.+.|.|.+.+.|.+.+.|+++ +..+... ..++..... .....|.|.+++..|
T Consensus 1 ~P~i~~~~~-~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D 74 (389)
T 2jll_A 1 QPHIIQLKN-ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-----HGSSSLHIKDVKLSD 74 (389)
T ss_dssp CCEEEECCC-EEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC-----SSEEEEEEESCCGGG
T ss_pred CCeEEecCc-eEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc-----CCcceEEEcccChhh
Confidence 577776544 4566799999999999999999999998 4443211 233333221 024689999999999
Q ss_pred CeeEEEEEecCCCceEEEEEe
Q psy4613 75 LGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 75 ~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.|.+.|..|.....+.|
T Consensus 75 ~G~Y~C~a~n~~g~~~~~~~l 95 (389)
T 2jll_A 75 SGRYDCEAASRIGGHQKSMYL 95 (389)
T ss_dssp CEEEEEEEECSSCEEEEEEEE
T ss_pred CEEEEEEEEeCCCCcceEEEE
Confidence 999999999999877655544
No 89
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.48 E-value=1.6e-12 Score=69.72 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=64.2
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+... +. ....|.|.++...|.|.|.|.+.|..|
T Consensus 229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~-~~~~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~g 303 (317)
T 2y25_A 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA-SDDHCNLKFE--AG--RTAYFTINGVSTADSGKYGLVVKNKYG 303 (317)
T ss_dssp CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEEC-CCSSEEECCB--TT--TEEEEEEBSCCSTTCEEEEEEEEETTE
T ss_pred CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCC-CCCcEEEEEc--CC--CEEEEEECCCCHHHCEEEEEEEEeCCC
Confidence 455678899999999999999999999999876553 3334433221 01 235899999999999999999999999
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
.....+.|
T Consensus 304 ~~~~~~~l 311 (317)
T 2y25_A 304 SETSDFTV 311 (317)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 88776654
No 90
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.47 E-value=6.9e-13 Score=66.62 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=63.8
Q ss_pred CCeEEecCc--eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 1 HPVIHVPNQ--LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~~~~~--~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+|.+..+.. .+.+..|+.+.|.|.+.+.+.+.+.|++++..+. ...++.... ....|.|.+++..|.|.|
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y 73 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKG-------SNTELTVRNIINSDGGPY 73 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECC-CSSSEEEET-------TTTEEEECSCCGGGCEEE
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcC-CCccEEEeC-------CeeEEEEecCChhcCcEE
Confidence 577766543 4678899999999999998999999999865543 333433321 124689999999999999
Q ss_pred EEEEecCCCceEEEE
Q psy4613 79 KCIAKNSLGEVESSI 93 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~ 93 (96)
.|.+.+..+......
T Consensus 74 ~C~~~~~~~~~~~~~ 88 (192)
T 2va4_A 74 VCRATNKAGEDEKQA 88 (192)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEccccccceEE
Confidence 999999877655444
No 91
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.47 E-value=1.2e-12 Score=70.02 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=61.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ..+........ . ....|.|.++.. .|.|.|.
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~--~~~~~~~~~~~-~--~~~~L~i~~~~~~~D~G~Y~ 80 (304)
T 2yd9_A 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN--SQRFETIEFDE-S--AGAVLRIQPLRTPRDENVYE 80 (304)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC---------CTTEEEEEETT-T--TEEEEEECSCCTTTTCSEEE
T ss_pred CCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC--CCceEEEEecC-C--CceEEEEecccccCCCeEEE
Confidence 5777777778889999999999999999999999999866542 23333322111 1 136799999997 9999999
Q ss_pred EEEecCCCceEEE
Q psy4613 80 CIAKNSLGEVESS 92 (96)
Q Consensus 80 c~~~~~~g~~~~~ 92 (96)
|.+.+..|.....
T Consensus 81 C~a~n~~g~~~~~ 93 (304)
T 2yd9_A 81 CVAQNSVGEITVH 93 (304)
T ss_dssp EEEECSSCEECCE
T ss_pred EEEECCCCeEEEE
Confidence 9999988864433
No 92
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.47 E-value=3.3e-12 Score=64.44 Aligned_cols=88 Identities=15% Similarity=0.161 Sum_probs=63.5
Q ss_pred CCeEEecCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecc-cceEEEEecc--ccceEEEEEEEccCCCCCCe
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISS-ERYEVESISR--SIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g 76 (96)
+|.+...+....+..|+.+.|.|.+. +.|.+.+.|++++..+.... .+........ ..+.....|.|.+++..|.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 46777788888899999999999999 88889999999865543211 1222221111 01111478999999999999
Q ss_pred eEEEEEecCCCc
Q psy4613 77 SYKCIAKNSLGE 88 (96)
Q Consensus 77 ~y~c~~~~~~g~ 88 (96)
.|.|.+.+..|.
T Consensus 82 ~Y~C~~~~~~~~ 93 (195)
T 2c5d_C 82 QYQCLVFLGHQT 93 (195)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEEeCCCc
Confidence 999999987664
No 93
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.46 E-value=9.3e-13 Score=72.49 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=64.6
Q ss_pred CeEEecCce-eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQL-VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~-~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+.. ..+..|+.+.|.|.+.+.|.+.+.|++++..+. ..++.... ..|.|.++...|.|.|.|
T Consensus 309 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~--~~~~~~~~---------~~L~i~~~~~~d~G~Y~C 377 (395)
T 1bih_A 309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS--GGRATVTD---------SGLVIKGVKNGDKGYYGC 377 (395)
T ss_dssp EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECC--SSSEEEET---------TEEEESSCCSTTCEEEEE
T ss_pred CccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECC--CCceEEEC---------CEEEEeeCCcccCEEEEE
Confidence 444444443 678899999999999999999999999876543 23443321 379999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 378 ~a~N~~G~~~~~~~l 392 (395)
T 1bih_A 378 RATNEHGDKYFETLV 392 (395)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEEccCCCceEEEEE
Confidence 999999988777655
No 94
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.46 E-value=3.8e-13 Score=67.95 Aligned_cols=77 Identities=30% Similarity=0.375 Sum_probs=60.0
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+..|..+.|.|.+.+.|.+.+.|++++..+. .. ..... ....|.|.++...|.|.|.|.+.|..|.
T Consensus 121 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-~~--~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 190 (201)
T 3s97_C 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP-ST--AEIST-------SGAVLKIFNIQLEDEGIYECEAENIRGK 190 (201)
T ss_dssp CCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC-TT--CEEET-------TTTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC-Cc--eeecC-------CCCEEEEccCChhhCEEEEEEEEecCCc
Confidence 35667889999999999999999999999876442 11 11111 1247899999999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 191 ~~~~~~l 197 (201)
T 3s97_C 191 DKHQARI 197 (201)
T ss_dssp EEEEEEE
T ss_pred eeeeEEE
Confidence 7776654
No 95
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.46 E-value=3.4e-13 Score=74.34 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=64.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+........... ....|.|.++...|.|.|.|.
T Consensus 313 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~ 385 (404)
T 3p3y_A 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-------AGDTIIFRDTQISSRAVYQCN 385 (404)
T ss_dssp EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE-------ETTEEEESSCCSSCCCEEEEE
T ss_pred CeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe-------cCCEEEEeecCHHHCEEEEEE
Confidence 3444455566788899999999999999999999998765532111111111 124799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 386 a~N~~G~~~~~~~l 399 (404)
T 3p3y_A 386 TSNEHGYLLANAFV 399 (404)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEeCCCcEEEEEEE
Confidence 99999988776654
No 96
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.46 E-value=5.3e-13 Score=66.89 Aligned_cols=77 Identities=27% Similarity=0.449 Sum_probs=59.6
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
..+..|..+.|.|.+.+.|.+.+.|++++..+. ...++.... ....|.|.++...|.|.|.|.+.|..|...
T Consensus 108 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 179 (189)
T 2v5t_A 108 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDE 179 (189)
T ss_dssp EETTSCCCEEEECEEEEESCCEEEEEETTEECC-CSSSEEEET-------TTTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred ccccCCCcEEEEEEEccCCCCeEEEEECCEECc-CCCcEEEec-------CCCEEEEcCCChhhCeeEEEEEEeCCCcee
Confidence 456779999999999999999999999865543 233333221 124689999999999999999999999877
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 180 ~~~~l 184 (189)
T 2v5t_A 180 KQAFL 184 (189)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 97
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.46 E-value=9.3e-12 Score=66.83 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=64.9
Q ss_pred CeEEecCc-eeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc----ceEEEEeccc--cceEEEEEEEccCCCCC
Q psy4613 2 PVIHVPNQ-LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE----RYEVESISRS--IFDFKMRLTIKKITKYD 74 (96)
Q Consensus 2 p~~~~~~~-~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~l~i~~~~~~d 74 (96)
|.+..++. .+.+..|..+.|.|.+.+.|.|.+.|++++..+..... .+.......+ .......|.|.++...|
T Consensus 209 P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d 288 (315)
T 1itb_B 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 288 (315)
T ss_dssp CEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred CEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHH
Confidence 44443333 24678999999999999999999999998655432111 1100000000 01134689999999999
Q ss_pred -CeeEEEEEecCCCceEEEEEe
Q psy4613 75 -LGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 75 -~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.|.+.|..|.....+.|
T Consensus 289 ~~G~Y~C~a~N~~G~~~~~~~l 310 (315)
T 1itb_B 289 YKHPFTCFAKNTHGIDAAYIQL 310 (315)
T ss_dssp GTSCEEEEEECTTCCEEEEEEE
T ss_pred cCCceEEEEecCCCceeEEEEE
Confidence 999999999999998887765
No 98
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=63.80 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=56.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
.+...+..+.+..|+.+.|.|.+.+.|.|.+.|++++..+. ...++.+.... .....|.|.++...|.|.|.|.+
T Consensus 15 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~-~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~~ 89 (115)
T 2cr6_A 15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLH-ANELNEIDAQP----GGYHVLTLRQLALKDSGTIYFEA 89 (115)
T ss_dssp EEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEEC-CSSSCCBCCBT----TTBCCBEECSCCTTTCEEEEEEE
T ss_pred eEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECC-CCCcEEEEEcC----CCEEEEEEcCCChhhCEEEEEEE
Confidence 45556677889999999999999999999999999876543 22333221100 02246999999999999999984
Q ss_pred e
Q psy4613 83 K 83 (96)
Q Consensus 83 ~ 83 (96)
.
T Consensus 90 g 90 (115)
T 2cr6_A 90 G 90 (115)
T ss_dssp T
T ss_pred C
Confidence 3
No 99
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=99.45 E-value=2.5e-12 Score=59.65 Aligned_cols=79 Identities=18% Similarity=0.321 Sum_probs=56.5
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++..+.+..|+++.|.|.+.+.+.+.+.|++... ..+. . ..++.... ......|.|.+
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~ 77 (108)
T 1jhl_L 3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG-----SGTDFTLTISS 77 (108)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----SSSEEEEEECS
T ss_pred ceeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe-----cCCEEEEEECC
Confidence 34556677889999999999999988888999998531 1111 0 12333221 01246799999
Q ss_pred CCCCCCeeEEEEEecCC
Q psy4613 70 ITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~ 86 (96)
++..|+|.|.|.+.+..
T Consensus 78 v~~~DsG~Y~C~~~n~~ 94 (108)
T 1jhl_L 78 LEPEDFAMYICQQHNEY 94 (108)
T ss_dssp CCTTCCSEEEEEECSSS
T ss_pred CCHHHCEEEEEEEccCC
Confidence 99999999999998863
No 100
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.45 E-value=1.7e-11 Score=61.49 Aligned_cols=80 Identities=25% Similarity=0.426 Sum_probs=60.3
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
+..++....+..|+.+.|.|.+.+.|. .+.|++.++.......+....... ....|.|.++...|.|.|.|.+.
T Consensus 5 ~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~ 78 (189)
T 2v44_A 5 VTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQAT 78 (189)
T ss_dssp EEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEET-----TEEEEEECSCCGGGCEEEEEEEE
T ss_pred EEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCC-----CeEEEEEccCCcccCeEEEEEEE
Confidence 456677788999999999999998777 899999433333334444433211 23589999999999999999999
Q ss_pred cCCCce
Q psy4613 84 NSLGEV 89 (96)
Q Consensus 84 ~~~g~~ 89 (96)
+..|..
T Consensus 79 ~~~g~~ 84 (189)
T 2v44_A 79 DAKGQT 84 (189)
T ss_dssp CTTSCE
T ss_pred eCCCCc
Confidence 987764
No 101
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.45 E-value=9.2e-12 Score=62.55 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=61.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+.+...+....+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.....++...... .....|.|.+++..|.|.|.
T Consensus 3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~ 78 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYK 78 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEE
T ss_pred eEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECC----CCceEEEEccCCcccCEEEE
Confidence 4566677778899999999999999876 78999999 554443233444432210 02468999999999999999
Q ss_pred EEEecCCC
Q psy4613 80 CIAKNSLG 87 (96)
Q Consensus 80 c~~~~~~g 87 (96)
|.+.+..+
T Consensus 79 C~~~~~~~ 86 (191)
T 1epf_A 79 CVVTAEDG 86 (191)
T ss_dssp EEEEETTT
T ss_pred EEEEcCCC
Confidence 99999874
No 102
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.45 E-value=6.6e-13 Score=74.49 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=64.8
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc---cceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS---ERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
|.+..++....+..|+.+.+.|.+ +.|.|.+.|++.++...... .++... ...+|.|.+++..|+|.|
T Consensus 342 P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y 412 (440)
T 3zyj_A 342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVL--------SDGTLNFTNVTVQDTGMY 412 (440)
T ss_dssp CCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEEC--------TTCCEEESSCCSTTCEEE
T ss_pred CcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEc--------cCCeEEEccCChhhCEEE
Confidence 566666777889999999999999 56888999998655543221 122211 124699999999999999
Q ss_pred EEEEecCCCceEEEEEe
Q psy4613 79 KCIAKNSLGEVESSIRL 95 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~l 95 (96)
.|.+.|..|....+..+
T Consensus 413 ~C~a~N~~G~~~~~~~~ 429 (440)
T 3zyj_A 413 TCMVSNSVGNTTASATL 429 (440)
T ss_dssp EEEEECSSCEEEEEEEE
T ss_pred EEEEEcCCCcEEEEEEE
Confidence 99999999988777654
No 103
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.45 E-value=9.3e-13 Score=66.14 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=58.1
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
+...+....+..|..+.|.|.+.+.|.+.+.|++++..+.. ...++.... ...|.|.++...|.|.|.|.+
T Consensus 99 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a 170 (189)
T 2v44_A 99 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA--------NNNLQILNINKSDEGIYRCEG 170 (189)
T ss_dssp EESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECT--------TSCEEETTCCGGGCEEEEEEE
T ss_pred eeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEec--------CCcEEEEEcCcccCeEEEEEE
Confidence 33334445678999999999999999999999998766542 223333221 236899999999999999999
Q ss_pred ecCCCceEE
Q psy4613 83 KNSLGEVES 91 (96)
Q Consensus 83 ~~~~g~~~~ 91 (96)
.|..+....
T Consensus 171 ~n~~~~~~~ 179 (189)
T 2v44_A 171 RVEARGEID 179 (189)
T ss_dssp EETTTTEEE
T ss_pred EccccCcee
Confidence 998865543
No 104
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.45 E-value=2.8e-13 Score=71.96 Aligned_cols=77 Identities=27% Similarity=0.449 Sum_probs=60.6
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
..+..|..+.|.|.+.+.|.+.+.|++++..+. ...++.... ....|.|.++...|.|.|.|.+.|..|...
T Consensus 204 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 275 (291)
T 2wim_A 204 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-ENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDE 275 (291)
T ss_dssp CCSSSCCEEEEECBCCCBSCCEEEEEETTEECC-CTTTEEECS-------TTCEEEEESCCSTTCEEEEEEEEETTEEEE
T ss_pred ceecCCCeEEEEEEeecCCCCeEEEEECCEECc-CCccEEEcC-------CccEEEEeeCCcccCEEEEEEEEECCCcee
Confidence 356779999999999999999999999865543 233333221 125789999999999999999999999988
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 276 ~~~~l 280 (291)
T 2wim_A 276 KQAFL 280 (291)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 87765
No 105
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.45 E-value=4.6e-12 Score=63.74 Aligned_cols=82 Identities=20% Similarity=0.365 Sum_probs=59.4
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+|.+..++.......|+.+.|.|.+.+.+. +.+.|++++..+. . .+... ....|.|.+++..|.|.|
T Consensus 3 ~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~-~-~~~~~---------~~~~L~i~~~~~~d~G~Y 71 (190)
T 2wv3_A 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELT-A-TRKNA---------SNMEYRINKPRAEDSGEY 71 (190)
T ss_dssp CCEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECT-T-CCBCC---------SEEEEEESSCCGGGCEEE
T ss_pred CCcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECc-c-cceEe---------ccEEEEEecCCcccCEEE
Confidence 567776655444444999999999998876 7899999865542 1 11110 247799999999999999
Q ss_pred EEEEecCCCceEEEEE
Q psy4613 79 KCIAKNSLGEVESSIR 94 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~ 94 (96)
.|.+.+. +.....+.
T Consensus 72 ~C~~~n~-~~~~~~~~ 86 (190)
T 2wv3_A 72 HCVYHFV-SAPKANAT 86 (190)
T ss_dssp EEEEEET-TEEEEEEE
T ss_pred EEEEEeC-CcccccEE
Confidence 9999988 65554443
No 106
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=4.5e-12 Score=59.11 Aligned_cols=67 Identities=24% Similarity=0.328 Sum_probs=51.3
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
+.+..|+.+.|.|.+. .+.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.+.|
T Consensus 23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n 89 (113)
T 2cpc_A 23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVV-ESPALLLQKED-----TVRRLVLPAVQLEDSGEYLCEIDD 89 (113)
T ss_dssp EEEETTCCEEEEEEES-CTTCCCEEEETTEECC-CBTTBEEEECS-----SEEEEEESSCCTTTCEEEEEESSS
T ss_pred EEEEcCCeEEEEEEec-CCCCeEEEEECCEECc-cCCCEEEEECC-----CEEEEEECCCCcccCEEEEEEEec
Confidence 5677899999999985 6888999999865543 33444443211 236799999999999999999988
No 107
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.44 E-value=7.6e-12 Score=72.46 Aligned_cols=88 Identities=25% Similarity=0.302 Sum_probs=70.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+........+..|+++.+.|.+.+.|.|.+.|++++..+. ...++...... ....|.|..+...|.|.|.|.
T Consensus 483 P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~-~s~~~~i~~~~-----~~~~L~I~~~~~~D~G~Yt~~ 556 (573)
T 3uto_A 483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELK-QSVKYMKRYNG-----NDYGLTINRVKGDDKGEYTVR 556 (573)
T ss_dssp CEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECC-SSSSEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred CccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcc-cCCcEEEEEcC-----CEEEEEEcCCCcccCcEEEEE
Confidence 444555566778899999999999999999999999876654 44555544322 346799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|...+.+.|
T Consensus 557 A~N~~G~~~~~v~l 570 (573)
T 3uto_A 557 AKNSYGTKEEIVFL 570 (573)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEeCCCcEEEEEEE
Confidence 99999998877665
No 108
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=8.9e-12 Score=58.30 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=56.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc----------ceEEEEeccccceEEEEEEEccCC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE----------RYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
|.+..+.....+..|+.+.|.|.+.+ .+.+.|++++..+. ... ++.+... . ....|.|.++.
T Consensus 9 ~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~-~~~~~~~~~~~~~r~~i~~~---g--~~~~L~I~~v~ 80 (112)
T 2e6q_A 9 ARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELK-SNEPEGQVEPGALRYRIEQK---G--LQHRLILHAVK 80 (112)
T ss_dssp CCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCC-SSCCCTTSCTTSCEEEECCB---T--TEEEEEEESCC
T ss_pred cEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECc-cCcccccccccccEEEEEeC---C--cEEEEEECCCC
Confidence 45666777888999999999999987 77899999977664 233 4443221 1 24579999999
Q ss_pred CCCCeeEEEEEec
Q psy4613 72 KYDLGSYKCIAKN 84 (96)
Q Consensus 72 ~~d~g~y~c~~~~ 84 (96)
..|.|.|.|...+
T Consensus 81 ~~D~G~Y~~~~~~ 93 (112)
T 2e6q_A 81 HQDSGALVGFSCP 93 (112)
T ss_dssp STTCSEEEEEEET
T ss_pred HHHCccEEEEEEC
Confidence 9999999775544
No 109
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.43 E-value=2.3e-12 Score=70.82 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=61.2
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. ....|.|.++...|.|.|.|.+.|
T Consensus 311 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~----------------~~~~L~i~~v~~~d~G~Y~C~a~N 374 (388)
T 2v5m_A 311 KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH----------------SESVLRIESVKKEDKGMYQCFVRN 374 (388)
T ss_dssp EEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC----------------CSSEEEESSCCGGGCEEEEEEEEC
T ss_pred ccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc----------------CCCEEEEecCChhhCEEEEEEEEc
Confidence 3344556788999999999999999999999998654421 124689999999999999999999
Q ss_pred CCCceEEEEEe
Q psy4613 85 SLGEVESSIRL 95 (96)
Q Consensus 85 ~~g~~~~~~~l 95 (96)
..|.....+.|
T Consensus 375 ~~G~~~~~~~l 385 (388)
T 2v5m_A 375 DRESAEASAEL 385 (388)
T ss_dssp SSCEEEEEEEE
T ss_pred CCCcEEEEEEE
Confidence 99988877765
No 110
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.43 E-value=1.3e-12 Score=69.39 Aligned_cols=79 Identities=30% Similarity=0.496 Sum_probs=60.1
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecc---cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS---ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
...+..|..+.|.|.+.+.|.+.+.|++++..+.... .++.... ....|.|.++...|.|.|.|.+.|..
T Consensus 205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~ 277 (291)
T 1qz1_A 205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD-------DSSELTIRNVDKNDEAEYVCIAENKA 277 (291)
T ss_dssp EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECT-------TSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred ccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcC-------CCcEEEEEecChhcCEEEEEEEEeCC
Confidence 3457789999999999999999999999876543221 1222211 12579999999999999999999999
Q ss_pred CceEEEEEe
Q psy4613 87 GEVESSIRL 95 (96)
Q Consensus 87 g~~~~~~~l 95 (96)
|.....+.|
T Consensus 278 G~~~~~~~l 286 (291)
T 1qz1_A 278 GEQDASIHL 286 (291)
T ss_dssp EEEEEEEEE
T ss_pred CceEEEEEE
Confidence 987766654
No 111
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=99.42 E-value=6.1e-12 Score=60.51 Aligned_cols=77 Identities=22% Similarity=0.275 Sum_probs=56.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee---EecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM---VISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+...+..+.+..|+.+.|.|.+.+. +.+.|+++. ... .....++...... ....|.|.+++..|+|.|
T Consensus 20 v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~-----~~~~L~I~~~~~~DsG~Y 92 (133)
T 3khq_A 20 IWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNG-----SVYTLTIQNIQYEDNGIY 92 (133)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEET-----TEEEEEECSCCGGGCEEE
T ss_pred eEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCC-----CEEEEEECCCChHHCEEE
Confidence 4555667789999999999999876 889999863 111 1123455443211 246799999999999999
Q ss_pred EEEEecCCC
Q psy4613 79 KCIAKNSLG 87 (96)
Q Consensus 79 ~c~~~~~~g 87 (96)
.|.+.+..|
T Consensus 93 ~C~a~n~~g 101 (133)
T 3khq_A 93 FCKQKCDSA 101 (133)
T ss_dssp EEEESSCC-
T ss_pred EEEEEeCCC
Confidence 999998754
No 112
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=99.42 E-value=2.1e-11 Score=59.26 Aligned_cols=84 Identities=14% Similarity=0.195 Sum_probs=58.8
Q ss_pred cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
.+..+.+..|+++.|.|.+.+.+.+.+.|++.+...+. ...++...... .....|.|.+++..|.|.|.
T Consensus 44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~~~DsG~Y~ 119 (145)
T 1z9m_A 44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTST----PHELSISISNVALADEGEYT 119 (145)
T ss_dssp BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEEC----SSEEEEEECSCCGGGCEEEE
T ss_pred CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCC----CCeEEEEECCCChhhCEEEE
Confidence 34567789999999999999888889999854322211 12333322111 02468999999999999999
Q ss_pred EEEecCCCceEEEEEe
Q psy4613 80 CIAKNSLGEVESSIRL 95 (96)
Q Consensus 80 c~~~~~~g~~~~~~~l 95 (96)
|.+.+. +.....+.|
T Consensus 120 C~~~n~-~~~~~~~~L 134 (145)
T 1z9m_A 120 CSIFTM-PVRTAKSLV 134 (145)
T ss_dssp EEECSS-SCEEEEEEE
T ss_pred EEEEcC-CCceEEEEE
Confidence 999998 766555543
No 113
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=99.42 E-value=6.7e-12 Score=58.33 Aligned_cols=78 Identities=15% Similarity=0.336 Sum_probs=55.7
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++..+.+..|+++.|.|.+.+.+.+.+.|++... ..+. . ..++..... .....|.|.+
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~ 79 (109)
T 2q20_A 5 QMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGS-----GTDFTFTISS 79 (109)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred cEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecc-----CCEEEEEECC
Confidence 45566677889999999999999887778899998631 1111 1 123332210 0235799999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|+|.|.|.+.+.
T Consensus 80 v~~~DsG~Y~C~~~~~ 95 (109)
T 2q20_A 80 LQPEDIATYYCQQYDN 95 (109)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred CChhhCEEEEEEEeeC
Confidence 9999999999999874
No 114
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.42 E-value=5.5e-12 Score=64.01 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=60.7
Q ss_pred EEecCceeeecCCCcEEEEEEeeeccc-----ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPK-----SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
+..++..+.+..|+.+.|.|.+.+.+. +.+.|++.+........+..+.. .........|.|.+++..|.|.|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y 82 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLE--EQLPLGKALFHIPSVQVRDSGQY 82 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECG--GGGGGTEEEEEECSCCGGGCEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEee--ccccCCeeEEEECCCCHHHCcEE
Confidence 445667788999999999999988775 78999994333332233333221 11011246799999999999999
Q ss_pred EEEEecCCCceEEEEE
Q psy4613 79 KCIAKNSLGEVESSIR 94 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~ 94 (96)
.|.+.+..+.....+.
T Consensus 83 ~C~~~~~~~~~~~~~~ 98 (202)
T 3bp6_B 83 RCLVICGAAWDYKYLT 98 (202)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCcceEEEE
Confidence 9999998775544443
No 115
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.42 E-value=8.7e-13 Score=66.30 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=59.7
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+... ..++.... ...|.|.++...|.|.|.|
T Consensus 101 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C 172 (191)
T 1epf_A 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS--------NNYLQIRGIKKTDEGTYRC 172 (191)
T ss_dssp SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT--------TSCEEETTCCGGGCEEEEE
T ss_pred ceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEec--------CCeEEECCCChhhCEEEEE
Confidence 44444555667889999999999999999999999987655321 12322211 1368999999999999999
Q ss_pred EEecCCCceE
Q psy4613 81 IAKNSLGEVE 90 (96)
Q Consensus 81 ~~~~~~g~~~ 90 (96)
.+.|..+...
T Consensus 173 ~a~n~~~~~~ 182 (191)
T 1epf_A 173 EGRILARGEI 182 (191)
T ss_dssp EEEEGGGTEE
T ss_pred EEEEecceeE
Confidence 9999876443
No 116
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=99.41 E-value=5.8e-12 Score=59.49 Aligned_cols=78 Identities=17% Similarity=0.318 Sum_probs=55.5
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++..+.+..|++++|.|.+.+.+.+.+.|++... ..+. . ..++..... .....|.|.+
T Consensus 5 ~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~ 79 (119)
T 2e27_L 5 QMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGS-----GRDYSFSISN 79 (119)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEECS
T ss_pred eeEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcc-----CCEEEEEECC
Confidence 45566677889999999999999887778999998531 1111 1 123332210 0245799999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++.+|+|.|.|.+.+.
T Consensus 80 v~~~DsG~Y~C~~~~~ 95 (119)
T 2e27_L 80 LEPEDAATYYCLQYDN 95 (119)
T ss_dssp CCGGGCEEEEEEECGG
T ss_pred CChHHCEEEEEEEccC
Confidence 9999999999999874
No 117
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=99.41 E-value=2e-11 Score=56.91 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=55.9
Q ss_pred eEEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccc-----eeEecccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG-----DMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
.+...+..+.+..|++++|.|.+.+. +.+.+.|++... .++....++........ ....|.|.+++..|+
T Consensus 2 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~v~~~Ds 78 (111)
T 2ywz_A 2 WVDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGS---KSFSLRISDLRVEDS 78 (111)
T ss_dssp EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTT---TEEEEEECSCCGGGC
T ss_pred eeEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCC---CEEEEEECCCChhcC
Confidence 45566777889999999999999875 467899998531 11112334443221111 246799999999999
Q ss_pred eeEEEEEec
Q psy4613 76 GSYKCIAKN 84 (96)
Q Consensus 76 g~y~c~~~~ 84 (96)
|.|.|.+.+
T Consensus 79 G~Y~C~~~~ 87 (111)
T 2ywz_A 79 GTYKCQADY 87 (111)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEc
Confidence 999999987
No 118
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.41 E-value=1.1e-12 Score=72.36 Aligned_cols=85 Identities=26% Similarity=0.443 Sum_probs=65.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...+..... ...|.|..+...|.|.|.|.
T Consensus 313 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~-~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~ 383 (403)
T 3laf_A 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI-PSDYFQIVG--------GSNLRILGVVKSDEGFYQCV 383 (403)
T ss_dssp EEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECC-CSSSEEEET--------TTEEEESSCCGGGCEEEEEE
T ss_pred CcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECC-CCCcEEEec--------CccEEEeccccccCEEEEEE
Confidence 344445555667889999999999999999999999876543 233333221 24689999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 384 a~N~~G~~~~~~~l 397 (403)
T 3laf_A 384 AENEAGNAQSSAQL 397 (403)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEcCCceEEEEEEE
Confidence 99999988877765
No 119
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.40 E-value=4.2e-11 Score=61.36 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=58.4
Q ss_pred CceeeecCCCcEEEEEEeeeccc--ceeEEeeccceeEecccceEEEEeccc---cceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQGDMVISSERYEVESISRS---IFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
...+.+..|+.+.|.|.+.+.+. +.+.|++++..+... ........... .......|.|.+++..|+|.|.|.+
T Consensus 112 ~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 190 (213)
T 2x1w_L 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK-KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190 (213)
T ss_dssp CSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSE-EEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceE-EEeccccccccCccceeeeEEEEECCCCcccCEEEEEEE
Confidence 34447889999999999998554 468999876543111 00000000000 0123468999999999999999999
Q ss_pred ecCCCceEEEEEe
Q psy4613 83 KNSLGEVESSIRL 95 (96)
Q Consensus 83 ~~~~g~~~~~~~l 95 (96)
.|..|.....+.|
T Consensus 191 ~N~~g~~~~~~~l 203 (213)
T 2x1w_L 191 SSGLMTKKNSTFV 203 (213)
T ss_dssp ECSSCEEEEEEEE
T ss_pred ecCCCcEEEEEEE
Confidence 9999987766654
No 120
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.40 E-value=2.7e-12 Score=69.02 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=57.0
Q ss_pred eeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 11 VGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
..+..|..+.|.|.+.+.|.| .+.|++++..+. . .... ....|.|.++...|.|.|.|.+.|..|..
T Consensus 227 ~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~-~--~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 294 (313)
T 4fqp_A 227 NWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP-P--FAVA---------QGAQLLIRPVDKPINTTLICNVTNALGAR 294 (313)
T ss_dssp CEETTCCCEEEEEEEEEESCCCEEEEEETTBSCC-T--TEEE---------ETTEEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred eeecCCCeEEEEEEecCCCCCcEEEEEECCEECC-C--ceEE---------eCCEEEECcCChhhCEEEEEEEEeCCCcE
Confidence 345668899999999999988 699999876543 1 1111 12468999999999999999999999988
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
...+.|
T Consensus 295 ~~~~~l 300 (313)
T 4fqp_A 295 QAELTV 300 (313)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777655
No 121
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.40 E-value=3e-11 Score=64.12 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=63.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+....+..|+.+.|.|.+.+.|. .+.|++.++.......++...... ....|.|.+++..|.|.|.|
T Consensus 4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C 77 (291)
T 2wim_A 4 LLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEG-----VRSRLTIYNANIEDAGIYRC 77 (291)
T ss_dssp CCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEE
T ss_pred CceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCC-----CEEEEEEccCCcccCEEEEE
Confidence 467778888889999999999999998764 899998434433334454443211 24679999999999999999
Q ss_pred EEecCCCce
Q psy4613 81 IAKNSLGEV 89 (96)
Q Consensus 81 ~~~~~~g~~ 89 (96)
.+.+..|..
T Consensus 78 ~~~n~~g~~ 86 (291)
T 2wim_A 78 QATDAKGQT 86 (291)
T ss_dssp EEECSSSCE
T ss_pred EEecccCce
Confidence 999988765
No 122
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.40 E-value=6.5e-12 Score=67.34 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=62.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+..+. ...+..|+.+.|.|.+.+. |.+.+.|++++..+. ...++.... ....|.|.+++..|.|.|.
T Consensus 7 ~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~ 77 (317)
T 2y25_A 7 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKD-------GICTLLITEFSKKDAGIYE 77 (317)
T ss_dssp CCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC-CSCC------------CCEEEEETTCCSTTCSCEE
T ss_pred CCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcC-CCCcEEEEC-------CeEEEEEccCCcccCeEEE
Confidence 45665444 4778999999999999887 778999999875543 233333322 2368999999999999999
Q ss_pred EEEecCCCceEEEEE
Q psy4613 80 CIAKNSLGEVESSIR 94 (96)
Q Consensus 80 c~~~~~~g~~~~~~~ 94 (96)
|.+.+..|.....+.
T Consensus 78 C~~~n~~g~~~~~~~ 92 (317)
T 2y25_A 78 VILKDDRGKDKSRLK 92 (317)
T ss_dssp EEEESSSCEEEEEEC
T ss_pred EEEECCCCcEEEEEE
Confidence 999998887655543
No 123
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.40 E-value=1.6e-11 Score=61.82 Aligned_cols=81 Identities=19% Similarity=0.316 Sum_probs=61.2
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEEEEEecCCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYKCIAKNSLG 87 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~~~~~~g 87 (96)
....+..|..+.|.|.+.+.|.+.+.|++++..+. ...+....... ....|.|.++.. .|.|.|.|.+.|..|
T Consensus 111 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~-~~~~~~~~~~~-----~~~~L~i~~~~~~~d~G~Y~C~a~n~~g 184 (197)
T 3lcy_A 111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ-NSENITIENTE-----HYTHLVMKNVQRKTHAGKYKVQLSNVFG 184 (197)
T ss_dssp SEEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEECS-----SEEEEEESSCCHHHHCEEEEEEEECSSC
T ss_pred cceeecCCCeEEEEEEEeeeeCCeeEEeECCEECC-CCCceEEEEcC-----CEEEEEEccccchhhCceEEEEEEcCcC
Confidence 33456789999999999999999999999865543 33344333211 236799999985 899999999999999
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
.....+.|
T Consensus 185 ~~~~~~~l 192 (197)
T 3lcy_A 185 TVDAILDV 192 (197)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 88776654
No 124
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.40 E-value=3.5e-11 Score=60.36 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=58.4
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEec------ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS------SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
..+..|..+.|.|.+.+.|.+.+.|++++...... ..++...... ....|.|.++...|.|.|.|.+.|
T Consensus 104 ~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~a~n 178 (192)
T 2va4_A 104 ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH-----GSSSLHIKDVKLSDSGRYDCEAAS 178 (192)
T ss_dssp EEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEEET-----TEEEEEEESCCGGGCEEEEEEEEC
T ss_pred ceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEeecc-----CceEEEEecCCcccCEEEEEEEEe
Confidence 34567999999999999999999999873222111 1222222111 236799999999999999999999
Q ss_pred CCCceEEEEEe
Q psy4613 85 SLGEVESSIRL 95 (96)
Q Consensus 85 ~~g~~~~~~~l 95 (96)
..|.....+.|
T Consensus 179 ~~g~~~~~~~l 189 (192)
T 2va4_A 179 RIGGHQKSMYL 189 (192)
T ss_dssp SSCEEEEEEEE
T ss_pred cCCceEEEEEE
Confidence 99987777655
No 125
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.40 E-value=4.1e-11 Score=62.13 Aligned_cols=88 Identities=23% Similarity=0.349 Sum_probs=61.4
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEee----ccceeEecccceE-EE-EeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVR----DQGDMVISSERYE-VE-SISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
+....+..|..+.|.|.+.+.|.+.+.|++ ++..+........ .. ............|.|.++...|.|.|.|.
T Consensus 121 ~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 200 (241)
T 3grw_A 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCR 200 (241)
T ss_dssp TCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEE
T ss_pred CccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEE
Confidence 344567789999999999999999999998 5443322111111 11 11111112357799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 201 a~N~~g~~~~~~~l 214 (241)
T 3grw_A 201 ATNFIGVAEKAFWL 214 (241)
T ss_dssp EECSSCEEEEEEEE
T ss_pred EecCcceEEEEEEE
Confidence 99999988777654
No 126
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.39 E-value=9.7e-13 Score=67.72 Aligned_cols=78 Identities=19% Similarity=0.472 Sum_probs=58.3
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccce---EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERY---EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
....+..|+.+.|.|.+.+.+.+.+.|++++..+.. ..+. .... ....|.|.+++..|.|.|.|.+.+.
T Consensus 27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~~~n~ 98 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRN-------QHWSLIMESVVPSDKGNYTCVVENE 98 (231)
T ss_dssp SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCG-GGSTTCCEEEG-------GGTEEEECSCCGGGCEEEEEEEEET
T ss_pred eeEEEccCCCEEEEEecccCCCCeEEEEECCccccc-cccccceeeec-------CcceEEEecCCcccCEEEEEEEecc
Confidence 556788999999999999989999999998765432 1111 1111 1246899999999999999999998
Q ss_pred CCceEEEEE
Q psy4613 86 LGEVESSIR 94 (96)
Q Consensus 86 ~g~~~~~~~ 94 (96)
.|.......
T Consensus 99 ~~~~~~~~~ 107 (231)
T 3ojm_B 99 YGSINHTYH 107 (231)
T ss_dssp TEEEEEEEE
T ss_pred cCcccccEE
Confidence 776654443
No 127
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.39 E-value=1.5e-11 Score=61.38 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=59.2
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+..+.+..|+.+.|.|.+.+.+.+.+.|++++..+. ...+....... ......|.|.+++..|.|.|.|.
T Consensus 3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~-~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~ 78 (182)
T 1rhf_A 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQ-NLDQLYIPVSE---QHWIGFLSLKSVERSDAGRYWCQ 78 (182)
T ss_dssp ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECC-SSEEEEEEEET---TEEEEEEEESSCCGGGCEEEEEE
T ss_pred CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecC-CCCceEEEecC---CCceEEEEEeecCcccCeEEEEE
Confidence 566667778889999999999999998889999999865543 22222222111 11246899999999999999999
Q ss_pred EecCCCc
Q psy4613 82 AKNSLGE 88 (96)
Q Consensus 82 ~~~~~g~ 88 (96)
+.+..+.
T Consensus 79 ~~~~~~~ 85 (182)
T 1rhf_A 79 VEDGGET 85 (182)
T ss_dssp ESSCTTC
T ss_pred EEcCCCc
Confidence 9987654
No 128
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.38 E-value=1.8e-12 Score=65.96 Aligned_cols=73 Identities=26% Similarity=0.429 Sum_probs=56.6
Q ss_pred ceeeecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 9 QLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
....+..|..+.|.|.+ .+.|.+.+.|++++..+.....+.... ...|.|..+...|.|.|.|.+.|..|
T Consensus 119 ~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~---------~~~L~i~~~~~~d~G~Y~C~a~N~~g 189 (212)
T 2v9r_A 119 SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR---------GGKLMITYTRKSDAGKYVCVGTNMVG 189 (212)
T ss_dssp CCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE---------TTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc---------CCeEEEeeCCHhhCeeEEEEEecccC
Confidence 44567889999999998 888999999999876554222333221 24689999999999999999999888
Q ss_pred ceE
Q psy4613 88 EVE 90 (96)
Q Consensus 88 ~~~ 90 (96)
...
T Consensus 190 ~~~ 192 (212)
T 2v9r_A 190 ERE 192 (212)
T ss_dssp EEE
T ss_pred cee
Confidence 643
No 129
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.38 E-value=9.9e-12 Score=66.52 Aligned_cols=81 Identities=17% Similarity=0.311 Sum_probs=58.6
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..... .....|.+..+ .|.|.|.|.+
T Consensus 207 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a 274 (304)
T 2yd9_A 207 RFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP-EDDMP---------VGRNVLELTDV--KDSANYTCVA 274 (304)
T ss_dssp EEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSC-SSSCC---------BSEEEEEECSC--CSCEEEEEEE
T ss_pred cEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCC-ccccc---------CCcEEEEEccc--ccCEEEEEEE
Confidence 344444455678899999999999999999999998655432 11111 02345666665 5899999999
Q ss_pred ecCCCceEEEEEe
Q psy4613 83 KNSLGEVESSIRL 95 (96)
Q Consensus 83 ~~~~g~~~~~~~l 95 (96)
.|..|.....+.|
T Consensus 275 ~N~~G~~~~~~~l 287 (304)
T 2yd9_A 275 MSSLGVIEAVAQI 287 (304)
T ss_dssp EETTEEEEEEEEE
T ss_pred EeCCCcEEEEEEE
Confidence 9999988777665
No 130
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A
Probab=99.38 E-value=4.6e-11 Score=56.96 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=57.6
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeec--ccceeEEeecc--ce---eEecccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ--GD---MVISSERYEVESISRSIFDFKMRLTIKKITKYD 74 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 74 (96)
+.+..++..+.+..|++++|.|.+.+. +.+.+.|++.. .. +.....++........ ....|.|.+++.+|
T Consensus 1 ~~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~---~~~sL~I~~v~~~D 77 (126)
T 3moq_A 1 AWVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS---KSFSLRISDLRVED 77 (126)
T ss_dssp CEEEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGG
T ss_pred CceEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCC---CEEEEEECcCChHh
Confidence 356677888889999999999998865 45679999842 11 1112344443322111 24679999999999
Q ss_pred CeeEEEEEecCC
Q psy4613 75 LGSYKCIAKNSL 86 (96)
Q Consensus 75 ~g~y~c~~~~~~ 86 (96)
+|.|.|.+.+..
T Consensus 78 sG~Y~C~~~~~~ 89 (126)
T 3moq_A 78 SGTYKCQAFYVF 89 (126)
T ss_dssp CEEEEEEEEEEE
T ss_pred CEEEEEEEEEcC
Confidence 999999988743
No 131
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=99.37 E-value=1.4e-11 Score=57.10 Aligned_cols=78 Identities=15% Similarity=0.332 Sum_probs=55.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++..+.+..|++++|.|.+.+.+.+.+.|++.. . ..+. . ..++..... .....|.|.+
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~ 77 (107)
T 1i8k_A 3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT-----GTDFVFTIEN 77 (107)
T ss_dssp CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESS
T ss_pred ceEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEcc-----CCEEEEEECC
Confidence 3455667788999999999999988777889999853 1 1111 1 123332210 0235799999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++.+|+|.|.|.+.+.
T Consensus 78 v~~~DsG~Y~C~~~~~ 93 (107)
T 1i8k_A 78 TLSEDVGDYYCLQSFN 93 (107)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred CCHHHCEEEEEEEeeC
Confidence 9999999999999875
No 132
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.37 E-value=2.4e-11 Score=62.04 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=58.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eE-ec--------ccceEEEEeccccceEEEEEEEc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MV-IS--------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
|.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++.. .. .. .. ..++..... .....|.|.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~ 76 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGS-----GTDFTLTIS 76 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEEC
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecC-----CCEEEEEEC
Confidence 45666677888999999999999999888999998842 11 11 11 234333211 023579999
Q ss_pred cCCCCCCeeEEEEEecCCC
Q psy4613 69 KITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g 87 (96)
+++..|.|.|.|.+.+..+
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~ 95 (213)
T 3nl4_L 77 DLECADAATYYCQSTYENP 95 (213)
T ss_dssp SCCGGGCEEEEEEECCSST
T ss_pred CCChHHCEEEEEecCCCCc
Confidence 9999999999999988655
No 133
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.37 E-value=4.6e-11 Score=63.44 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecc-cceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
++.+...+....+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.....++...... .....|.|.+++..|.|.|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y 77 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIY 77 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEE
Confidence 45677777778899999999999998876 68999998 444333223333332211 0246899999999999999
Q ss_pred EEEEecCCCc
Q psy4613 79 KCIAKNSLGE 88 (96)
Q Consensus 79 ~c~~~~~~g~ 88 (96)
.|.+.+..|.
T Consensus 78 ~C~~~n~~g~ 87 (291)
T 1qz1_A 78 KCVVTAEDGT 87 (291)
T ss_dssp EEEEECTTSC
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 134
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.37 E-value=1.3e-11 Score=62.77 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-----------cccceEEEEeccccceEEEEEEEcc
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-----------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
+..+..++..+.+..|+.+.|.|.+.+.+.+.+.|++++..... ...+.... ...|.|.+
T Consensus 1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~L~i~~ 71 (212)
T 1f97_A 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS---------SSGITFSS 71 (212)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE---------TTEEEESC
T ss_pred CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee---------ceeEEEcc
Confidence 34566777888899999999999999888899999987654211 11222221 25689999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|.|.|.|.+.+..|
T Consensus 72 v~~~D~G~Y~C~~~~~~g 89 (212)
T 1f97_A 72 VTRKDNGEYTCMVSEEGG 89 (212)
T ss_dssp CCGGGCEEEEEEEEETTS
T ss_pred cCcccCeEEEEEEEccCC
Confidence 999999999999998766
No 135
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.37 E-value=1.1e-11 Score=63.03 Aligned_cols=79 Identities=8% Similarity=0.094 Sum_probs=56.8
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+..+..+.+.|.+.+.|.|.+.|++++..+... ... .........+.|.|..+...|.|.|.|.+.|..|.
T Consensus 126 ~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~-~~~----~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~ 200 (218)
T 4frw_A 126 PALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSS-RSF----KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLL 200 (218)
T ss_dssp SCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEE-EEE----ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCS
T ss_pred eeeeeeeccccceeeeccCCcCceEEEEECCcccccC-ceE----ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCC
Confidence 3345667889999999999999999999986554321 110 01111113467999999999999999999999886
Q ss_pred eEEE
Q psy4613 89 VESS 92 (96)
Q Consensus 89 ~~~~ 92 (96)
....
T Consensus 201 ~~~~ 204 (218)
T 4frw_A 201 QDQR 204 (218)
T ss_dssp SCEE
T ss_pred eEEE
Confidence 5433
No 136
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.37 E-value=3.7e-12 Score=65.49 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=57.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. .. ....|.|.++...|.|.|.|.
T Consensus 119 p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~-~~--------------~~~~L~i~~v~~~d~G~Y~C~ 183 (218)
T 3k0w_A 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT-HE--------------TKKLYMVPYVDLEHQGTYWCH 183 (218)
T ss_dssp CEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECT-TC--------------CSSEEEESSCCGGGCEEEEEE
T ss_pred ceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECC-CC--------------CCCEEEEeecChhcCEEEEEE
Confidence 445555566778899999999999999999999999865442 11 114688999999999999999
Q ss_pred EecCCCc
Q psy4613 82 AKNSLGE 88 (96)
Q Consensus 82 ~~~~~g~ 88 (96)
+.|..|.
T Consensus 184 a~n~~g~ 190 (218)
T 3k0w_A 184 VYNDRDS 190 (218)
T ss_dssp EECSSCE
T ss_pred EEcCCCC
Confidence 9998775
No 137
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=8.1e-12 Score=57.28 Aligned_cols=69 Identities=26% Similarity=0.442 Sum_probs=52.3
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+.+..|+.+.|.|.+. .+.+.+.|++++..+. ...++.+.... ....|.|.++...|.|.|.|.+.+.
T Consensus 20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~-~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~~~ 88 (102)
T 2eo1_A 20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLS-SSSKVRVEAVG-----CTRRLVVQQAGQAEAGEYSCEAGGQ 88 (102)
T ss_dssp EEEEETTCCEEECCBCS-CSSSCCEEEETTEECC-CCSSEEEEEET-----TEEEEEETTCCTTTCSCEEEEETTE
T ss_pred cEEEeCCCcEEEEEEec-CCCCceEEEECCEECC-CCCCEEEEEcC-----CEEEEEECCCCcccCEEEEEEcCCC
Confidence 45688999999999988 7888999999876553 23344443211 2367999999999999999998654
No 138
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=1e-12 Score=74.23 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=60.3
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEec--ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS--SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
+....+..|+.+.+.|.+.|.|.|.+.|++++...... ..++... ...++.|.+++..|+|.|.|.+.|.
T Consensus 392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~ 463 (477)
T 2id5_A 392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVF--------PDGTLEVRYAQVQDNGTYLCIAANA 463 (477)
T ss_dssp CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEEC--------TTSCEEESSCCSTTCEEEEEEEEET
T ss_pred cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeC--------CCCEEEEeeCChHHCEEEEEEEEeC
Confidence 35567889999999999999999999999987554321 1122111 1145899999999999999999999
Q ss_pred CCceEEEEEe
Q psy4613 86 LGEVESSIRL 95 (96)
Q Consensus 86 ~g~~~~~~~l 95 (96)
.|.....+.|
T Consensus 464 ~g~~~~~~~l 473 (477)
T 2id5_A 464 GGNDSMPAHL 473 (477)
T ss_dssp TEEEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9987766654
No 139
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=99.37 E-value=1.6e-11 Score=58.04 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=55.1
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--ee-Eec--------ccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DM-VIS--------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+..++..+.+..|++++|.|.+.+.+.+.+.|++.. . .. ... ..++..... .....|.|.++
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~v 78 (120)
T 1mqk_L 4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS-----GTQFSLKINSL 78 (120)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred eEecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEecc-----CCEEEEEECCC
Confidence 455667788999999999999988777889999853 1 11 111 123332210 02357999999
Q ss_pred CCCCCeeEEEEEecC
Q psy4613 71 TKYDLGSYKCIAKNS 85 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~ 85 (96)
+..|+|.|.|.+.+.
T Consensus 79 ~~~DsG~Y~C~~~~~ 93 (120)
T 1mqk_L 79 LPEDFGSYYCQHHYG 93 (120)
T ss_dssp CGGGCEEEEEEECSS
T ss_pred CHHHCEEEEEEEEeC
Confidence 999999999999875
No 140
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.37 E-value=1.2e-11 Score=62.35 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=57.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|..+.|.|.+.+.|.+ .+.|++++..+.... .. .....|.|.++. |.|.|.|
T Consensus 107 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~-~~----------~~~~~L~i~~~~--d~G~Y~C 173 (195)
T 2c5d_C 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP-GH----------GPQRSLHVPGLN--KTSSFSC 173 (195)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSST-TS----------SCCEEEEECCCS--SCEEEEE
T ss_pred CeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCC-Cc----------CCCCeEEEcccc--cCceEEE
Confidence 445555555678889999999999999999 999999876553221 11 023678888887 7899999
Q ss_pred EEecCCCceE
Q psy4613 81 IAKNSLGEVE 90 (96)
Q Consensus 81 ~~~~~~g~~~ 90 (96)
.+.|..|...
T Consensus 174 ~a~N~~g~~~ 183 (195)
T 2c5d_C 174 EAHNAKGVTT 183 (195)
T ss_dssp EEEETTEEEE
T ss_pred EEEcCCCceE
Confidence 9999988664
No 141
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.36 E-value=1.8e-11 Score=62.53 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=58.2
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEEc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
|.+..++ .+.+..|+.+.|.|.+.+.+.+.+.|++.. ... .. ...++..... .....|.|.
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~ 75 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNS-----GNMATLTIS 75 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-----TTEEEEEES
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEec-----CCEEEEEEC
Confidence 4555666 788999999999999998889999999831 111 10 1123332221 134679999
Q ss_pred cCCCCCCeeEEEEEecCCC
Q psy4613 69 KITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g 87 (96)
+++..|.|.|.|.+.+..+
T Consensus 76 ~v~~~D~G~Y~C~~~~~~~ 94 (213)
T 3mj8_L 76 KAQAGDEADYYCQSWDGTN 94 (213)
T ss_dssp SCCGGGCEEEEEEEEETTT
T ss_pred CCChhhCEEEEEEeccCCc
Confidence 9999999999999998876
No 142
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.36 E-value=1.9e-11 Score=68.47 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=57.4
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. ........ .....|.|.+++..|.|.|.|.+.|..|
T Consensus 55 ~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~-~~~~~~~~------~~~~sL~I~~v~~~D~G~Y~C~a~N~~g 127 (423)
T 3qs7_E 55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNC-QPHFDLQN------RGVVSMVILKMTETQAGEYLLFIQSEAT 127 (423)
T ss_dssp -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECC-CCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred cccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCc-cceecccc------ceEEEEEEeecCcccCEEEEEEEEcCCC
Confidence 3467899999999999999999999999988654431 11111000 0124689999999999999999999988
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
.....+.|
T Consensus 128 ~~~~~~~l 135 (423)
T 3qs7_E 128 NYTILFTV 135 (423)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEE
Confidence 77655544
No 143
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.36 E-value=2.2e-11 Score=67.00 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=63.1
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
.+..+.....+..|+.+.|.|.+.+.|.+.+.|++++..+.... .++...... ....|.|.++...|.|.|.|.
T Consensus 102 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~ 176 (389)
T 2jll_A 102 KFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG-----RKMILEIAPTSDNDFGRYNCT 176 (389)
T ss_dssp EECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECS-----SCEEEEECCCSTTSSEEEEEE
T ss_pred EEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccC-----CEEEEEECCCChhhCEEEEEE
Confidence 33334444467889999999999999999999999876553221 233322211 236799999999999999999
Q ss_pred EecCCCceEEEEE
Q psy4613 82 AKNSLGEVESSIR 94 (96)
Q Consensus 82 ~~~~~g~~~~~~~ 94 (96)
+.|..|.....+.
T Consensus 177 a~N~~G~~~~~~~ 189 (389)
T 2jll_A 177 ATNHIGTRFQEYI 189 (389)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEcCCCcEEEEEE
Confidence 9999987665543
No 144
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.35 E-value=1.7e-12 Score=66.44 Aligned_cols=77 Identities=29% Similarity=0.402 Sum_probs=57.3
Q ss_pred CceeeecCCCcEEEEEEe-eecccceeEEeeccceeEe-------cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 8 NQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+....+..|..+.|.|.+ .+.|.+.+.|++++..+.. ...+.... ....|.|.++...|.|.|.
T Consensus 115 ~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~ 186 (217)
T 2vr9_A 115 PKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV--------DGGNLLISNVEPIDEGNYK 186 (217)
T ss_dssp CCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE--------TTTEEEESSCCSTTCEEEE
T ss_pred CCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec--------CCCcEEEeeCCHHHCeEEE
Confidence 344567889999999998 8889999999998655431 11122111 1246999999999999999
Q ss_pred EEEecCCCceEEE
Q psy4613 80 CIAKNSLGEVESS 92 (96)
Q Consensus 80 c~~~~~~g~~~~~ 92 (96)
|.+.|..|.....
T Consensus 187 C~a~N~~G~~~~~ 199 (217)
T 2vr9_A 187 CIAQNLVGTRESS 199 (217)
T ss_dssp EEEEETTEEEECC
T ss_pred EEEEcccceeccc
Confidence 9999999876544
No 145
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.35 E-value=7.1e-12 Score=62.78 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-cccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.+.+.+.|++++..+.. ...++.... ...|.|.+++..|.|.|.
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~ 73 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA--------NNNLQILNINKSDEGIYR 73 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT--------TSCEEETTCCGGGCEEEE
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec--------CCCEEEeeCCHhHCcEEE
Confidence 46677777778899999999999999988899999998655432 122332211 235899999999999999
Q ss_pred EEEecCCCc
Q psy4613 80 CIAKNSLGE 88 (96)
Q Consensus 80 c~~~~~~g~ 88 (96)
|.+.+..+.
T Consensus 74 C~~~~~~~~ 82 (189)
T 2v5t_A 74 CEGRVEARG 82 (189)
T ss_dssp EEEEETTTT
T ss_pred EEEEEcCCC
Confidence 999987654
No 146
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=99.35 E-value=5.6e-11 Score=55.39 Aligned_cols=78 Identities=18% Similarity=0.381 Sum_probs=55.4
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++..+.+..|++++|.|.+.+.+.+.+.|++... ..+. . ..++..... .....|.|.+
T Consensus 6 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~I~~ 80 (111)
T 1i3g_L 6 VLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGS-----GTDFTLTISN 80 (111)
T ss_dssp CEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred eEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcC-----CCEEEEEECC
Confidence 45566777889999999999999877777899998632 1111 1 123332210 0235799999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|+|.|.|.+.+.
T Consensus 81 v~~~DsG~Y~C~~~~~ 96 (111)
T 1i3g_L 81 VQSEDLADYFCQQYSS 96 (111)
T ss_dssp CCGGGCSEEEEEECSS
T ss_pred CCHHHCEEEEEEEecC
Confidence 9999999999999875
No 147
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.35 E-value=5.4e-12 Score=69.64 Aligned_cols=77 Identities=29% Similarity=0.425 Sum_probs=57.4
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+..|+.+.|.|.+.+.|.|.+.|++.+....... ..... ....|.|.+++..|.|.|.|.+.|..|.
T Consensus 213 ~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~--~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 283 (384)
T 3kld_A 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK--ARRHK-------SNGILEIPNFQQEDAGSYECVAENSRGK 283 (384)
T ss_dssp SEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT--CEECT-------TSCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc--ceecC-------CCcEEEECCCChhhCEEEEEEEEcCCCe
Confidence 34567889999999999999999999998654332111 11111 1256999999999999999999999987
Q ss_pred eEEEEE
Q psy4613 89 VESSIR 94 (96)
Q Consensus 89 ~~~~~~ 94 (96)
......
T Consensus 284 ~~~~~~ 289 (384)
T 3kld_A 284 NVAKGQ 289 (384)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655443
No 148
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.35 E-value=2.2e-12 Score=65.31 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=56.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+.. .+..|+.+.|.|.+.+ +.+.+.|++++..+... . .. .........|.|.+++..|.|.|.|
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~--~--~~---~~~~~~~~~L~i~~v~~~D~G~Y~C 75 (196)
T 3p2t_A 5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD--R--QN---PLEPKNKARFSIPSMTEDYAGRYRC 75 (196)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE--E--EC---CCSSSSEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc--c--cc---cccCCceEEEEeccCCcccCceEEE
Confidence 4666666655 6889999999999888 67789999987554211 0 00 0000134779999999999999999
Q ss_pred EEecCCC
Q psy4613 81 IAKNSLG 87 (96)
Q Consensus 81 ~~~~~~g 87 (96)
.+.|..|
T Consensus 76 ~a~n~~g 82 (196)
T 3p2t_A 76 YYRSPVG 82 (196)
T ss_dssp EEEETTE
T ss_pred EEeCCCc
Confidence 9998776
No 149
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=99.35 E-value=5.3e-11 Score=55.21 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=55.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--ce---eEecccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GD---MVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
.+...+..+.+..|+++.|.|.+.+.. .+.+.|++.. .. +.....++........ ....|.|.+++..|+
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~~~~~Ds 78 (108)
T 2coq_A 2 RVDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGS---NSASLTIRDLRVEDS 78 (108)
T ss_dssp CEEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTT---TEEEEEECSCCGGGC
T ss_pred ceEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCC---CEEEEEECCCCcccC
Confidence 355667778899999999999987653 5689999863 11 1112344443221111 246799999999999
Q ss_pred eeEEEEEec
Q psy4613 76 GSYKCIAKN 84 (96)
Q Consensus 76 g~y~c~~~~ 84 (96)
|.|.|.+.+
T Consensus 79 G~Y~C~~~~ 87 (108)
T 2coq_A 79 GTYKCKAYR 87 (108)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999999987
No 150
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.35 E-value=1.8e-10 Score=62.43 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=63.0
Q ss_pred cCceeeecCCCcEEEEEEeeecc---cc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCe-eEEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYP---KS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG-SYKCI 81 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~---~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~c~ 81 (96)
.+....+..|+.+.|.|.+.+.| .+ .+.|++++..+................ .....|.|.++...|.| .|.|.
T Consensus 234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y~C~ 312 (329)
T 3oq3_B 234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGG-ITEATLYFENVTEEYIGNTYTCR 312 (329)
T ss_dssp CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETT-EEEEEEEESSCCGGGTTCEEEEE
T ss_pred cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCc-eeEeEEEEEeccHHHCCCcEEEE
Confidence 34456788999999999999987 67 789999876543222222111101111 14578999999999999 99999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 313 a~N~~G~~~~~~~l 326 (329)
T 3oq3_B 313 GHNYYFDKTLTTTV 326 (329)
T ss_dssp EECSSCEEEEEEEE
T ss_pred EEecCCceEEEEEE
Confidence 99999988777655
No 151
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.34 E-value=4.7e-12 Score=65.68 Aligned_cols=79 Identities=16% Similarity=0.445 Sum_probs=58.4
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--ceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..+.+..|+.+.|.|.+.+.+.+.+.|++++..+..... ...... ....|.|.+++..|.|.|.|.+.+..
T Consensus 23 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~~~~ 95 (241)
T 3grw_A 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRH-------QQWSLVMESVVPSDRGNYTCVVENKF 95 (241)
T ss_dssp CEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEG-------GGTEEEECSCCGGGCEEEEEEEEETT
T ss_pred cceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeec-------cceEEEEEeCCcccCEEEEEEEeecC
Confidence 457788999999999999988999999998765532111 111111 12468999999999999999999987
Q ss_pred CceEEEEE
Q psy4613 87 GEVESSIR 94 (96)
Q Consensus 87 g~~~~~~~ 94 (96)
+.....+.
T Consensus 96 ~~~~~~~~ 103 (241)
T 3grw_A 96 GSIRQTYT 103 (241)
T ss_dssp EEEEEEEE
T ss_pred CceEEEEE
Confidence 76655443
No 152
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.34 E-value=1.8e-11 Score=62.61 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=56.1
Q ss_pred eeeecCCCcEEEEEE---eeecccceeEEeeccceeEe-----cc-----------cceEEEEeccccceEEEEEEEccC
Q psy4613 10 LVGAPIDTDVTLECY---VEAYPKSINYWVRDQGDMVI-----SS-----------ERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~---~~~~~~~~~~w~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
.+.+..|+.+.|.|. ..+.|.+.+.|++.+..... .. .++..... .....|.|.++
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~I~~v 76 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS-----ANTFFLVVTAA 76 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEE-----TTEEEEEESSC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEc-----CCEEEEEEccC
Confidence 456889999999995 45678899999987532210 00 01111110 02367999999
Q ss_pred CCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 71 TKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+..|.|.|.|.+.|..|.......|
T Consensus 77 ~~~D~G~Y~C~a~n~~g~~~~~~~l 101 (203)
T 4fa8_A 77 NISHDGNYLCRMKLGETEVTKQEHL 101 (203)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CHHHCeEEEEEEEcCCCcEEEEEEE
Confidence 9999999999999988877665543
No 153
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=99.34 E-value=1.2e-11 Score=57.42 Aligned_cols=77 Identities=18% Similarity=0.369 Sum_probs=54.3
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+..++..+.+..|+++.|.|.+.+.+.+.+.|++... ..+. . ..++.... ......|.|.++
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v 78 (108)
T 1qfw_M 4 LTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSG-----SATDFTLTISSV 78 (108)
T ss_dssp EEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCB-----CSSEEEEEESSC
T ss_pred EEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEc-----CCCEEEEEECCC
Confidence 4556667789999999999999877777899998531 1111 0 11222110 112467999999
Q ss_pred CCCCCeeEEEEEecC
Q psy4613 71 TKYDLGSYKCIAKNS 85 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~ 85 (96)
+..|+|.|.|.+.+.
T Consensus 79 ~~~DsG~Y~C~~~~~ 93 (108)
T 1qfw_M 79 QAEDFADYHCGQTYN 93 (108)
T ss_dssp CTTCCSEEEEEECSS
T ss_pred ChhhCEEEEEEEccC
Confidence 999999999999875
No 154
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=8.8e-12 Score=68.54 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=59.8
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEec---ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS---SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
+..+.+..|+.+.+.|.+.+ |.|.+.|++.+...... ..++.. . ..+|.|.+++..|+|.|.|.+.|
T Consensus 253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~--------~~~L~I~~v~~~D~G~Y~C~a~N 322 (361)
T 2xot_A 253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-R--------NGDLFFKKVQVEDGGVYTCYAMG 322 (361)
T ss_dssp CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-E--------TTEEEESSCCTTSCEEEEEEEEC
T ss_pred ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-e--------cCeEEEeecCcccCEEEEEEEec
Confidence 34567889999999999998 88999999976554321 123333 1 24699999999999999999999
Q ss_pred CCCceEEEEEe
Q psy4613 85 SLGEVESSIRL 95 (96)
Q Consensus 85 ~~g~~~~~~~l 95 (96)
..|.....+.|
T Consensus 323 ~~g~~~~~~~l 333 (361)
T 2xot_A 323 ETFNETLSVEL 333 (361)
T ss_dssp SSCEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 98887766554
No 155
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.34 E-value=1e-11 Score=63.09 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=53.4
Q ss_pred ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+.+ +.+.|++++..+. ...++.... ....|.|.++...|.|.|.|.+.|..|...
T Consensus 122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~-~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~ 190 (208)
T 3r4d_A 122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ-LTERMTLSQ-------NNSILRIDPIKREDAGEYQCEISNPVSVRR 190 (208)
T ss_dssp CCTTCCEEEEEECSCTT-CEEEEEETTEECC-CCSSEEEET-------TTTEEEESSCCGGGCEEEEEEEECTTCCEE
T ss_pred EeeCCCEEEEEECCCCC-CceEEEECCEeCC-CCCCeEEcC-------CCCEEEEeccCHHhCeEEEEEEecCCCccc
Confidence 67899999999998865 7999999865543 333443322 125699999999999999999999988754
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=2.2e-11 Score=66.54 Aligned_cols=82 Identities=17% Similarity=0.152 Sum_probs=60.1
Q ss_pred ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEec--cccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
...|..+.|.|.+.+.|.|.+.|++++..+. ........... .........|.|.+++..|.|.|.|.+.|..|...
T Consensus 258 ~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~ 336 (347)
T 2ifg_A 258 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLN-ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336 (347)
T ss_dssp CEESSSEEEEEEEEEESCCEEEEEETTEECC-CCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred CccCceEEEEEEeeecCCCcEEEEeCCEECC-CCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence 4568999999999999999999999875543 22222211111 01111357799999999999999999999999888
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 337 ~~~~l 341 (347)
T 2ifg_A 337 ASIMA 341 (347)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77765
No 157
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.33 E-value=6.2e-11 Score=60.83 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=53.9
Q ss_pred eecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 12 GAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 12 ~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
.+..|..+.|.|.+ .+.|.+.+.|++++................ ......+.|.++...|.|.|.|.+.|..|...
T Consensus 121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 197 (222)
T 4i0k_A 121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANE---RGLFDVHSVLRVVLGANGTYSCLVRNPVLQQD 197 (222)
T ss_dssp ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECT---TSCEEEEEEEEEECCTTCEEEEEEEETTTTEE
T ss_pred eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCC---CCeEEEEEEEEEEeCCCCEEEEEEECCCCCCc
Confidence 45679999999999 788889999998544332111111111111 11224577888899999999999999999877
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 198 ~~~~l 202 (222)
T 4i0k_A 198 AHGSV 202 (222)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 76654
No 158
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=2e-12 Score=64.98 Aligned_cols=78 Identities=29% Similarity=0.461 Sum_probs=59.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIA 82 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~ 82 (96)
.+...+....+..|..+.|.|.+.+.|.+.+.|++++..+. ...++.... ...|.|.++...|.|.|.|.+
T Consensus 102 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a 172 (192)
T 2iep_A 102 KITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-ENSRIAVLE--------SGSLRIHNVQKEDAGQYRCVA 172 (192)
T ss_dssp EEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECC-CCSSEEECT--------TSCEEESSCCGGGCEEEEEEE
T ss_pred ccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEcc-CCCcEEEec--------CCcEEEecCChhhCEEEEEEE
Confidence 34444555678889999999999999999999999865543 223332211 136899999999999999999
Q ss_pred ecCCCce
Q psy4613 83 KNSLGEV 89 (96)
Q Consensus 83 ~~~~g~~ 89 (96)
.|..|..
T Consensus 173 ~n~~g~~ 179 (192)
T 2iep_A 173 KNSLGTA 179 (192)
T ss_dssp EETTEEE
T ss_pred EcCCCcE
Confidence 9998865
No 159
>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}
Probab=99.33 E-value=3.2e-11 Score=57.45 Aligned_cols=80 Identities=19% Similarity=0.372 Sum_probs=56.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc----cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~ 64 (96)
+.+..++..+.+..|++++|.|.+...+ .+.+.|++... ..+.. ..++..... .....
T Consensus 2 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~s 76 (126)
T 4ffy_L 2 IVLTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGS-----ETDFT 76 (126)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEE
T ss_pred CcEEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecC-----CCEEE
Confidence 4566777788899999999999988765 56899998521 11111 123332210 12467
Q ss_pred EEEccCCCCCCeeEEEEEecCC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
|.|.+++..|+|.|.|.+.+..
T Consensus 77 L~I~~v~~~DsG~Y~C~~~~~~ 98 (126)
T 4ffy_L 77 LTIDSVETDDAATYYCQQNNED 98 (126)
T ss_dssp EEESSCCGGGCEEEEEEECSSS
T ss_pred EEECCCCHHHCEEEEEEEecCC
Confidence 9999999999999999998753
No 160
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.33 E-value=8.7e-11 Score=60.59 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=58.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEe---c-------------ccceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVI---S-------------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~ 64 (96)
+..|...+.+..|+++.|.|.+.+.+.+ .+.|++++..... . ..+.... ..........
T Consensus 7 V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~--~~~~~~~~~~ 84 (226)
T 4f80_A 7 VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL--RDGITAGKAA 84 (226)
T ss_dssp EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEE--CTTGGGTEEE
T ss_pred EECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEe--cccccCCeEE
Confidence 3345666888999999999998865544 6899987543210 0 0011111 1111112467
Q ss_pred EEEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 65 LTIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
|.|.+++..|.|.|.|.+.|..|......
T Consensus 85 L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v 113 (226)
T 4f80_A 85 LRIHNVTASDSGKYLCYFQDGDFYEKALV 113 (226)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEEeeCchHHCeeEEEEEECCCcEEEEEE
Confidence 99999999999999999999877655443
No 161
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A
Probab=99.33 E-value=1.9e-10 Score=55.45 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=58.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccce--eE-ec-------------ccceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQGD--MV-IS-------------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~~--~~-~~-------------~~~~~~~~~~~~~~~~~~~ 64 (96)
+..++..+.+..|+++.|.|.+.+.+ .+.+.|++.+.. .. .. ..+..+... ........
T Consensus 9 V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~~~s 86 (139)
T 1pko_A 9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKE--SIGEGKVA 86 (139)
T ss_dssp EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECT--TGGGTEEE
T ss_pred EECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccc--cccCCeEE
Confidence 34456677899999999999987644 257999987531 11 00 112222110 00112467
Q ss_pred EEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|.|.+++..|+|.|.|.+.+..+.....+.|
T Consensus 87 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L 117 (139)
T 1pko_A 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117 (139)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEEEcCCCceEEEEEE
Confidence 9999999999999999999987755554443
No 162
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.33 E-value=4.2e-11 Score=59.74 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=56.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|..+.|.|.+.+.|.| .+.|++++..+... . . ....|.|.++ .|.|.|.|
T Consensus 99 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~--~-~----------~~~~L~i~~~--~d~G~Y~C 163 (182)
T 1rhf_A 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP--A-P----------SPSVLNVTGV--TQSTMFSC 163 (182)
T ss_dssp CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS--E-E----------SSEEEEECCC--SSCEEEEE
T ss_pred CeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC--C-C----------CceEEEEecc--ccCeEEEE
Confidence 555555566678899999999999999999 99999986554211 1 0 1256888887 48899999
Q ss_pred EEecCCCceE
Q psy4613 81 IAKNSLGEVE 90 (96)
Q Consensus 81 ~~~~~~g~~~ 90 (96)
.+.|..|...
T Consensus 164 ~a~N~~g~~~ 173 (182)
T 1rhf_A 164 EAHNLKGLAS 173 (182)
T ss_dssp EEEETTEEEE
T ss_pred EEECCCCCcc
Confidence 9999988664
No 163
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=99.32 E-value=4.3e-11 Score=55.74 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=54.2
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc----cceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l 65 (96)
.+...+..+.+..|+++.|.|.+.+.+ .+.+.|++.. . ..+.. ..++..... .....|
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L 77 (111)
T 1j05_L 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-----RTDFTL 77 (111)
T ss_dssp CEEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEE-----TTEEEE
T ss_pred cEEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEcc-----CCEEEE
Confidence 345566778899999999999988765 5689999853 1 11111 123332210 023579
Q ss_pred EEccCCCCCCeeEEEEEecC
Q psy4613 66 TIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.+++..|+|.|.|.+.+.
T Consensus 78 ~I~~v~~~DsG~Y~C~~~~~ 97 (111)
T 1j05_L 78 IIDPVEADDVATYYCQQTNE 97 (111)
T ss_dssp EESSCCGGGCEEEEEEECSS
T ss_pred EECCCCcccCEEEEEEEecC
Confidence 99999999999999999875
No 164
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.32 E-value=1.8e-10 Score=68.63 Aligned_cols=93 Identities=30% Similarity=0.406 Sum_probs=65.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+. ...++...............|.|..+...|.|.|.|.
T Consensus 430 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 508 (816)
T 3dmk_A 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA-NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508 (816)
T ss_dssp CEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECC-SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEE
T ss_pred CceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECC-CCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEE
Confidence 444444455667889999999999999999999999865543 3334433221111111346799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.......|
T Consensus 509 a~n~~g~~~~~~~l 522 (816)
T 3dmk_A 509 AKSKVGVAEHSAKL 522 (816)
T ss_dssp EEETTEEEEEEEEE
T ss_pred EEECCCeEEEEEEE
Confidence 99998876655543
No 165
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.32 E-value=3e-11 Score=61.63 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=55.1
Q ss_pred cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
+...+.+..|+.+.|.|.+.|.|.|.+.|.+...... ...... . . ....|.|.+++..|.|.|.|.+.|..
T Consensus 7 p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~~~~-~-~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~ 77 (202)
T 1vca_A 7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGKVTN-E-G-----TTSTLTMNPVSFGNEHSYLCTATCES 77 (202)
T ss_dssp SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSEEEE-E-T-----TEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred CCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cceEEE-c-C-----CccEEEECcCCHHHCEEEEEEEEECC
Confidence 3344555699999999999998999999987432211 011111 0 0 23569999999999999999999987
Q ss_pred CceEEEEE
Q psy4613 87 GEVESSIR 94 (96)
Q Consensus 87 g~~~~~~~ 94 (96)
|.....+.
T Consensus 78 ~~~~~~~~ 85 (202)
T 1vca_A 78 RKLEKGIQ 85 (202)
T ss_dssp EEEEEEEE
T ss_pred ceEeeEEE
Confidence 76554443
No 166
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=2.5e-12 Score=72.42 Aligned_cols=84 Identities=23% Similarity=0.346 Sum_probs=62.7
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc---cceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS---ERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
|.+...+....+..|+.+.+.|.+. |.|.+.|++.++...... .++... ...+|.|.+++..|+|.|
T Consensus 353 P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~--------~~g~L~i~~v~~~D~G~Y 422 (452)
T 3zyi_A 353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVL--------NDGTLNFSHVLLSDTGVY 422 (452)
T ss_dssp CCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEEC--------TTSCEECSSCCTTCCEEE
T ss_pred cccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEEC--------CCCeEEEeecCHHHCEEE
Confidence 4444455667889999999999988 889999998655543211 122211 124699999999999999
Q ss_pred EEEEecCCCceEEEEEe
Q psy4613 79 KCIAKNSLGEVESSIRL 95 (96)
Q Consensus 79 ~c~~~~~~g~~~~~~~l 95 (96)
.|.+.|..|.....+.|
T Consensus 423 ~C~a~N~~G~~~~~~~l 439 (452)
T 3zyi_A 423 TCMVTNVAGNSNASAYL 439 (452)
T ss_dssp EEEEECSSCEEEEEEEE
T ss_pred EEEEEcCCCcEEEEEEE
Confidence 99999999988877665
No 167
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.32 E-value=5.4e-11 Score=62.46 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=54.8
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ceeE--ec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDMV--IS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|+.++|.|.+.+.+.+.+.|++.. .... .. ..++..... .....|.|.+
T Consensus 140 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~ 214 (256)
T 3umt_A 140 QLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRS-----GSDYSLTISS 214 (256)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEECS
T ss_pred EEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecC-----CCEEEEEECC
Confidence 3444455677889999999999999888899999842 1111 00 123322211 1245799999
Q ss_pred CCCCCCeeEEEEEecCC
Q psy4613 70 ITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~ 86 (96)
++..|.|.|.|.+.+..
T Consensus 215 v~~~D~G~Y~C~~~~~~ 231 (256)
T 3umt_A 215 LESEDFVDYYCLQYASS 231 (256)
T ss_dssp CCGGGCSEEEEEECSSS
T ss_pred CChhHCEEEEEEEeeCC
Confidence 99999999999998853
No 168
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.32 E-value=4.8e-11 Score=60.93 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=58.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--e--eE-e--------cccceEEEEeccccceEEEEEEEc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--D--MV-I--------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~--~~-~--------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
|.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++... . .. . ...++..... .....|.|.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~ 76 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGS-----GRDSSFTIS 76 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEES
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEecc-----CCEEEEEEC
Confidence 556676778889999999999999998888999987321 1 11 0 1223333211 024579999
Q ss_pred cCCCCCCeeEEEEEecCCC
Q psy4613 69 KITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g 87 (96)
+++..|.|.|.|.+.+..+
T Consensus 77 ~v~~~D~G~Y~C~~~~~~~ 95 (213)
T 3r06_A 77 SLESEDIGSYYCQQYYNYP 95 (213)
T ss_dssp SCCGGGCSEEEEEECSSSS
T ss_pred CCCcccCEEEEEecccCCc
Confidence 9999999999999987643
No 169
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.32 E-value=9.2e-12 Score=63.72 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=60.4
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.... ....... .... ....+.|.+++..|.|.|.
T Consensus 9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~-~~~~--~~~~l~i~~v~~~d~G~Y~ 85 (217)
T 2vr9_A 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF-KDGA--LFFYRTMQGKKEQDGGEYW 85 (217)
T ss_dssp CCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEEC-TTSC--EEESSCCBSSSCBCCEEEE
T ss_pred CCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEe-cCCc--eEEEEEeccCCcccCceEE
Confidence 4777777778889999999999999998889999999865543211 1111111 1000 1123467788999999999
Q ss_pred EEEecCCCce
Q psy4613 80 CIAKNSLGEV 89 (96)
Q Consensus 80 c~~~~~~g~~ 89 (96)
|.+.+..|..
T Consensus 86 C~~~n~~g~~ 95 (217)
T 2vr9_A 86 CVAKNRVGQA 95 (217)
T ss_dssp EEEEETTEEE
T ss_pred EEEecCCCcc
Confidence 9999877643
No 170
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.31 E-value=2.2e-11 Score=60.66 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=56.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++..+. . ....|.|.+++..|.|.|.
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~-~---------------~~~~L~i~~~~~~d~G~Y~ 70 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-S---------------QASSYFIDAATVNDSGEYR 70 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-S---------------SCSEEEESSCCGGGCEEEE
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEcc-C---------------CceEEEEeCCCcccCEEEE
Confidence 36666666666789999999999999887775 78999865442 1 1257899999999999999
Q ss_pred EEEecCCCce
Q psy4613 80 CIAKNSLGEV 89 (96)
Q Consensus 80 c~~~~~~g~~ 89 (96)
|.+.+..+..
T Consensus 71 C~~~n~~~s~ 80 (175)
T 1fnl_A 71 CQTNLSTLSD 80 (175)
T ss_dssp EECSSSCCCC
T ss_pred EEeeCCcccc
Confidence 9998865543
No 171
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=99.31 E-value=1.5e-10 Score=54.05 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=54.8
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee-------cccceEEEEeccccceEEEEEEEccCCC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI-------SSERYEVESISRSIFDFKMRLTIKKITK 72 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 72 (96)
+...+..+.+..|+++.|.|.+.+.+ +.+.|++... .. +. ...++...... .......|.|.+++.
T Consensus 4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~--~~~~~~~L~I~~v~~ 80 (113)
T 1h5b_A 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS--ERARYSTLHIRDAQL 80 (113)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCS--SSSSEEEEEECSCCG
T ss_pred eEECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEcc--CCCCEEEEEECCCCh
Confidence 45566777899999999999988744 6899987531 11 10 12233221110 011346799999999
Q ss_pred CCCeeEEEEEecCCC
Q psy4613 73 YDLGSYKCIAKNSLG 87 (96)
Q Consensus 73 ~d~g~y~c~~~~~~g 87 (96)
.|+|.|.|.+.+..|
T Consensus 81 ~DsG~Y~C~~~n~~~ 95 (113)
T 1h5b_A 81 EDSGTYFCAAEASSG 95 (113)
T ss_dssp GGCEEEEEEEECSSS
T ss_pred hhCEEEEEEEecCCC
Confidence 999999999998654
No 172
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.31 E-value=1e-10 Score=66.72 Aligned_cols=85 Identities=19% Similarity=0.244 Sum_probs=62.0
Q ss_pred eeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..|+.+.|.|.+.+.|.+. +.|++++..+.....++.... ....+.....|.|.++...|.|.|.|.+.|..|.
T Consensus 322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 400 (524)
T 2ec8_A 322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE-NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN 400 (524)
T ss_dssp EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCC-SSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEc-cCCCceeEEEEEEeecCcccCeEEEEEEEecCce
Confidence 56788999999999999999998 999998765532221221110 0001113478999999999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 401 ~~~~~~l 407 (524)
T 2ec8_A 401 AAIAFNV 407 (524)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7666554
No 173
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=99.30 E-value=1.2e-10 Score=56.78 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=55.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++..+.+..|++++|.|.+...+.+.+.|++... ..+.. ..++..... .....|.|.+
T Consensus 18 ~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~-----~~~~sL~I~~ 92 (146)
T 2yc1_B 18 VLTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGS-----GTDFTLTISS 92 (146)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred eEEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecC-----CCEEEEEECC
Confidence 45566777889999999999998876777899998531 12111 123332210 0235799999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|+|.|.|.+.+.
T Consensus 93 v~~~DsG~Y~C~~~~~ 108 (146)
T 2yc1_B 93 LEPEDFAIYYCQQYRY 108 (146)
T ss_dssp CCGGGCSEEEEEECSS
T ss_pred CCHHHCEEEEEEEecC
Confidence 9999999999999875
No 174
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.30 E-value=5.3e-12 Score=64.47 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=53.1
Q ss_pred cCCCcEEEEEEeeecc-c-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 14 PIDTDVTLECYVEAYP-K-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~-~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
..|..+.|.|.+.+.+ . +.+.|++++..+........... ....+.....|.|..+...|.|.|.|.+.|..+....
T Consensus 127 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 205 (213)
T 3mj8_L 127 LKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEK 205 (213)
T ss_dssp HTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEE
T ss_pred ccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEe
Confidence 3699999999998853 3 38999998765431100000000 1112224467899999999999999999999877665
Q ss_pred EE
Q psy4613 92 SI 93 (96)
Q Consensus 92 ~~ 93 (96)
.+
T Consensus 206 ~~ 207 (213)
T 3mj8_L 206 SL 207 (213)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 175
>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}
Probab=99.30 E-value=1.5e-11 Score=58.56 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=56.2
Q ss_pred ecCceeeecCCCcEEEEEEeeeccc---ceeEEeecccee---Eec-------------ccceEEEEeccccceEEEEEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDM---VIS-------------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.++..+...+|++++|.|.+..... ..+.|++.+... ... ..+..+ ...........|.
T Consensus 10 ~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~--~~~~~~~g~~sL~ 87 (125)
T 4gos_A 10 VTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAV--FADQVIVGNASLR 87 (125)
T ss_dssp EEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEE--CTTTGGGTBCCEE
T ss_pred ccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEE--ecCCccCCeEEEE
Confidence 4445567789999999999864332 268898864211 000 011111 1111011134699
Q ss_pred EccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 67 IKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|.+++..|+|.|.|.+.+..|.....+.|
T Consensus 88 I~~v~~~D~G~Y~C~v~~~~g~~~~~v~L 116 (125)
T 4gos_A 88 LKNVQLTDAGTYKCYIITSKGKGNANLEY 116 (125)
T ss_dssp ESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred ECCCChHHCEEEEEEEEeCCCeEEEEEEE
Confidence 99999999999999999988877766654
No 176
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=99.30 E-value=2.4e-10 Score=65.26 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=64.6
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccce-eEEeecccee-EecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDM-VISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++... .....+.... ..........|.|.++...|.|.|.
T Consensus 212 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~ 289 (524)
T 2ec8_A 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH--GDFNYERQATLTISSARVNDSGVFM 289 (524)
T ss_dssp CEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC--SSSCEEEEEEEEESSCCTTTCEEEE
T ss_pred CcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc--cCCccceEEEEEECCCCHHHCEEEE
Confidence 5555555666789999999999999988886 9999987652 1011111110 0001124578999999999999999
Q ss_pred EEEecCCCceEEEEEe
Q psy4613 80 CIAKNSLGEVESSIRL 95 (96)
Q Consensus 80 c~~~~~~g~~~~~~~l 95 (96)
|.+.|..|.....+.|
T Consensus 290 C~a~n~~g~~~~~~~l 305 (524)
T 2ec8_A 290 CYANNTFGSANVTTTL 305 (524)
T ss_dssp EEEECSSCEEEEEEEE
T ss_pred EEEEecCCceEEEEEE
Confidence 9999998877655543
No 177
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=99.30 E-value=1.1e-10 Score=54.63 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=54.7
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--E-ecccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--V-ISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
+...+..+.+..|++++|.|.+.+.+ .+.+.|++... .. . ....++........ ....|.|.+++.+|+|
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~---~~~~L~I~~~~~~DsG 79 (113)
T 1sq2_N 3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGS---KSFSLRINDLTVEDGG 79 (113)
T ss_dssp EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred eEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCC---CEEEEEECCCChhhCE
Confidence 45566778899999999999987655 56899998631 11 1 12234443221111 2467999999999999
Q ss_pred eEEEEEec
Q psy4613 77 SYKCIAKN 84 (96)
Q Consensus 77 ~y~c~~~~ 84 (96)
.|.|.+.+
T Consensus 80 ~Y~C~~~~ 87 (113)
T 1sq2_N 80 TYRCGLGV 87 (113)
T ss_dssp EEEEEECB
T ss_pred EEEEEEEe
Confidence 99999987
No 178
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.29 E-value=8e-11 Score=59.58 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=49.7
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.+..|..+.|.|.+.+ +.+.+.|++++............... .....|.|.+++..|.|.|.|.+.|..+
T Consensus 110 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQ-----QHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEE-----EEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeeccccccc-----CcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 4678999999999887 45688999986544221111111000 1346799999999999999999999765
No 179
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.29 E-value=1.6e-10 Score=59.48 Aligned_cols=74 Identities=12% Similarity=0.253 Sum_probs=55.3
Q ss_pred ceeeecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..+.+..|.++.|.|.+ +.+.| .+.|.+....+ .+..... ....|.|.+++..|.|.|.|.+.+..
T Consensus 15 ~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l----~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~n~~ 82 (210)
T 1gsm_A 15 PVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL----GAVQSDT-------GRSVLTVRNASLSAAGTRVCVGSCGG 82 (210)
T ss_dssp SEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT----CCEEEES-------SEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc----CcEEecC-------CccEEEECccCcccCceEEEEEEeCC
Confidence 34688999999999999 88888 99998854322 1211111 34779999999999999999999987
Q ss_pred CceEEEEE
Q psy4613 87 GEVESSIR 94 (96)
Q Consensus 87 g~~~~~~~ 94 (96)
+.....+.
T Consensus 83 ~~~~~~~~ 90 (210)
T 1gsm_A 83 RTFQHTVQ 90 (210)
T ss_dssp EEEEEEEE
T ss_pred CceEEEEE
Confidence 76554443
No 180
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.29 E-value=2.6e-12 Score=65.40 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=56.1
Q ss_pred eecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 12 GAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 12 ~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
.+..|..+.|.|.+ .+.|.+.+.|++++........... .. ....|.|.++...|.|.|.|.+.|..|...
T Consensus 132 ~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~------~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~ 203 (214)
T 3jz7_A 132 SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA------EM--TSPVISVKNASSEYSGTYSCTVQNRVGSDQ 203 (214)
T ss_dssp CCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG------GT--TSSEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred ceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee------cc--CCCEEEEecCCHHHCEEEEEEEEcCCCcEE
Confidence 36779999999999 7889999999985432211111000 00 124799999999999999999999999887
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 204 ~~~~l 208 (214)
T 3jz7_A 204 CMLRL 208 (214)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77765
No 181
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.29 E-value=3.1e-10 Score=60.30 Aligned_cols=90 Identities=12% Similarity=0.274 Sum_probs=60.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|+.+.|.|.+.+.+.+ .+.|.+++..+... ...... ...+.....|.|.++...|.|.|.|
T Consensus 187 p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C 262 (292)
T 4dkd_C 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP-QQSDFH---NNRYQKVLTLNLDQVDFQHAGNYSC 262 (292)
T ss_dssp CEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCC-BEEEEE---TTEEEEEEEEEESSCCTTSCEEEEE
T ss_pred CeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccC-ccceec---cceeeeEEEEEECccChhcCeEEEE
Confidence 444444455556789999999999986654 56676665433211 111111 1111234689999999999999999
Q ss_pred EEecCCCceEEEEEe
Q psy4613 81 IAKNSLGEVESSIRL 95 (96)
Q Consensus 81 ~~~~~~g~~~~~~~l 95 (96)
.+.|..|.....+.|
T Consensus 263 ~a~N~~g~~~~~~~l 277 (292)
T 4dkd_C 263 VASNVQGKHSTSMFF 277 (292)
T ss_dssp EEECSSCEEEEEEEE
T ss_pred EEecCCCCceeEEEE
Confidence 999999988777655
No 182
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.29 E-value=4.9e-11 Score=59.74 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=55.7
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
..+..|+.+.|.|.+.+.|.+.+.|++++..... ....|.|.++...|.|.|.|.+.+..+...
T Consensus 107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~----------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~ 170 (184)
T 2ny1_B 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVE 170 (184)
T ss_dssp SEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE----------------ESSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc----------------CceEEEEecCCcCCCeEEEEEEEECCceEE
Confidence 4568899999999998889999999988644311 235789999999999999999999887766
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 171 ~~~~l 175 (184)
T 2ny1_B 171 FKIDI 175 (184)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66544
No 183
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.29 E-value=2.5e-11 Score=62.66 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEE--EEEEccCCCCCCeeE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM--RLTIKKITKYDLGSY 78 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y 78 (96)
+|.+...+. ..+..|+.++|.|.+.+ +.+.+.|++++..+.......... .... .|.|.+++..|+|.|
T Consensus 9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~-------~~~~~~~L~I~~v~~~D~G~Y 79 (218)
T 1uct_A 9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKF-------WNETDPEFVIDHMDANKAGRY 79 (218)
T ss_dssp CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC-----------CCCEEEECSCCGGGCEEE
T ss_pred CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCC-------CcceeeEEEEcccccccCEEE
Confidence 356665555 46889999999999876 677899999865543211110000 0123 799999999999999
Q ss_pred EEEEecCCC
Q psy4613 79 KCIAKNSLG 87 (96)
Q Consensus 79 ~c~~~~~~g 87 (96)
.|.+.+..|
T Consensus 80 ~C~a~n~~~ 88 (218)
T 1uct_A 80 QCQYRIGHY 88 (218)
T ss_dssp EEEEEETTT
T ss_pred EEEEEcCCC
Confidence 999998765
No 184
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.28 E-value=4.9e-11 Score=64.39 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=58.3
Q ss_pred eeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEc-cCCCCCCeeEEEEEecCCC
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIK-KITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~c~~~~~~g 87 (96)
...+..|+.+.|.|.+.+.|.+. +.|++++..+. . .... ....|.|. ++...|.|.|.|.+.|..|
T Consensus 241 ~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~-~--~~~~---------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G 308 (331)
T 3u83_A 241 GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP-K--GVEA---------QNRTLFFKGPINYSLAGTYICEATNPIG 308 (331)
T ss_dssp SCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCC-T--TEEE---------ETTEEEECSCCCGGGCEEEEEEEEETTE
T ss_pred CceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccc-c--ccee---------cCcEEEEeCCCccccCeEEEEEEEeccc
Confidence 34467899999999999999998 99999876543 1 1111 12568899 8999999999999999999
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
.....+.|
T Consensus 309 ~~~~~~~l 316 (331)
T 3u83_A 309 TRSGQVEV 316 (331)
T ss_dssp EEEEEEEE
T ss_pred cceEEEEE
Confidence 88777665
No 185
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.28 E-value=5.9e-12 Score=69.32 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=62.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+..+.+..|+.+.|.|.+.+ .+.+.+.|++++..+.....+..... ....|.|.+++..|.|.|.
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-------~~~~L~i~~~~~~D~G~Y~ 78 (395)
T 1bih_A 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRK-------DEGSLVFLRPQASDEGHYQ 78 (395)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECT-------TSCCEEESSCCGGGCEEEE
T ss_pred CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEec-------CCceEEEecCCCCCCcEEE
Confidence 477777777888999999999999998 78889999998765532221221111 1246899999999999999
Q ss_pred EEEecCCCce
Q psy4613 80 CIAKNSLGEV 89 (96)
Q Consensus 80 c~~~~~~g~~ 89 (96)
|.+.+..|..
T Consensus 79 C~a~n~~g~~ 88 (395)
T 1bih_A 79 CFAETPAGVA 88 (395)
T ss_dssp EEEEETTEEE
T ss_pred EEEEeCCCeE
Confidence 9999977653
No 186
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.28 E-value=5e-11 Score=61.02 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=56.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc---c-eeE-ecc------------cceEEEEeccccceEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ---G-DMV-ISS------------ERYEVESISRSIFDFKM 63 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~---~-~~~-~~~------------~~~~~~~~~~~~~~~~~ 63 (96)
|.+..++ .+.+..|+.+.|.|.+.+. +.+.+.|++.. . ... ... .++.+.. .....
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~ 75 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-----SGADR 75 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-----ETTEE
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-----CCceE
Confidence 4566677 8889999999999999998 88899999832 1 111 000 1332221 01246
Q ss_pred EEEEccCCCCCCeeEEEEEecCCC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.|.+++..|.|.|.|.+.+..|
T Consensus 76 ~L~I~~v~~~D~G~Y~C~~~~~~~ 99 (218)
T 3s96_B 76 YLSISNIQPEDEAIYICGVGDTIK 99 (218)
T ss_dssp EEEESSCCGGGCEEEEEEEEEEET
T ss_pred EEEEccCCcccCEEEEEEEecCCC
Confidence 799999999999999999988665
No 187
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.28 E-value=2.9e-11 Score=62.18 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=59.4
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEee----ccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVR----DQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
....+..|..+.|.|.+.+.|.+.+.|++ ++..+....... ...............|.|.++...|.|.|.|.+.
T Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 205 (231)
T 3ojm_B 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205 (231)
T ss_dssp CCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEE
T ss_pred CceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEE
Confidence 44567889999999999999999999998 443332111111 1111111111122469999999999999999999
Q ss_pred cCCCceEEEEEe
Q psy4613 84 NSLGEVESSIRL 95 (96)
Q Consensus 84 ~~~g~~~~~~~l 95 (96)
|..|.....+.|
T Consensus 206 n~~g~~~~~~~l 217 (231)
T 3ojm_B 206 NYIGQANQSAWL 217 (231)
T ss_dssp ETTEEEEEEEEE
T ss_pred eccceEeeEEEE
Confidence 999987666554
No 188
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=99.28 E-value=9e-11 Score=54.90 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=54.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc------cceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP------KSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~ 63 (96)
.+..++..+.+..|+++.|.|.+.+.+ .+.+.|++... ..+. . ..++..... ....
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~ 77 (114)
T 1eeq_A 3 VLTQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGS-----GTDF 77 (114)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEE
T ss_pred ceEecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeec-----CCEE
Confidence 355666778899999999999988765 36899998531 1111 1 123332210 0235
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++..|+|.|.|.+.+.
T Consensus 78 ~L~I~~v~~~DsG~Y~C~~~~~ 99 (114)
T 1eeq_A 78 TLTISSLQAEDVAVYYCQQYYS 99 (114)
T ss_dssp EEEESSCCGGGCEEEEEEECSS
T ss_pred EEEECCCCcccCEEEEEEEeeC
Confidence 7999999999999999999875
No 189
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}
Probab=99.28 E-value=1.9e-11 Score=56.52 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+.. .+..|++++|.|...+. ...+.|++++...... +. . .......|.|..++..|+|.|.|
T Consensus 5 kP~i~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~--~~-----~--~~~~~~~l~I~~v~~~dsG~Y~C 73 (105)
T 2vsd_A 5 QPSLSLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDK--EK-----D--KEQDAAEFSFAVTNLEDAGTYQC 73 (105)
T ss_dssp CCEEEEESCS-SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEE--EE-----C--TTCSEEEEEEECCSGGGCEEEEE
T ss_pred CCEEEeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEECCccceee--ec-----c--CCCCEEEEEECCCCHHHCeEEEE
Confidence 3666655544 58899999999998764 3567798886433211 00 0 01134679999999999999999
Q ss_pred EEecC
Q psy4613 81 IAKNS 85 (96)
Q Consensus 81 ~~~~~ 85 (96)
.+.+.
T Consensus 74 ~~~n~ 78 (105)
T 2vsd_A 74 RYQVS 78 (105)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99874
No 190
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=99.28 E-value=4.5e-11 Score=69.60 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=57.8
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
+....+..|+.+.|.|.+.+.|.+.+.|++++..+. ....|.|.++...|.|.|.|.+.|..|
T Consensus 566 ~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~-----------------~~~~L~i~~~~~~d~G~Y~C~a~N~~G 628 (642)
T 1e07_A 566 PPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ-----------------HTQVLFIAKITPNNNGTYACFVSNLAT 628 (642)
T ss_pred CCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECc-----------------cCceEEECcccccCCeEEEEEEEeccc
Confidence 344667889999999999999999999999864432 114688999999999999999999999
Q ss_pred ceEEEEEe
Q psy4613 88 EVESSIRL 95 (96)
Q Consensus 88 ~~~~~~~l 95 (96)
....+..|
T Consensus 629 ~~~~s~~l 636 (642)
T 1e07_A 629 GRNNSIVK 636 (642)
T ss_pred CcceeEEE
Confidence 87666544
No 191
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.28 E-value=8.4e-11 Score=60.04 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=57.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+..++..+.+..|+.+.|.|.+.+.+.+.+.|++... .. .. ...++..... .....|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v 78 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-----GTDFTLSINSV 78 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESSC
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcC-----CCEEEEEECCC
Confidence 4455677889999999999999998888999987431 11 00 0123332210 02357999999
Q ss_pred CCCCCeeEEEEEecCCCc
Q psy4613 71 TKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g~ 88 (96)
+..|.|.|.|.+.+..+.
T Consensus 79 ~~~D~G~Y~C~~~~~~~~ 96 (213)
T 3d9a_L 79 ETEDFGMYFCQQSNSWPY 96 (213)
T ss_dssp CGGGCEEEEEEECSSSSC
T ss_pred ChhhCEEEEEeeecCCcc
Confidence 999999999999987653
No 192
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.28 E-value=2.8e-10 Score=60.84 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=60.6
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEcc-CCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKK-ITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..|..+.|.|.+.+.|.+.+.|++++..+. ...++...... ....|.|.+ +...|.|.|.|.+.|..|.
T Consensus 113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~ 186 (305)
T 2nzi_A 113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-NNGHYQVIVTR-----SFTSLVFPNGVERKDAGFYVVCAKNRFGI 186 (305)
T ss_dssp CEEEETTCCEEEEEEEEEESCCEEEEEESSSBCC-SSSSCEEEECS-----SEEEEEETTCCCSTTCEEEEEEEEETTEE
T ss_pred cEEecCCCEEEEEEEECCCCCCEEEEEECCEECC-CCCcEEEEEcC-----CceEEEEecCCccCccEEEEEEEEeCCCc
Confidence 3556789999999999999999999999865543 33344332211 246788998 9999999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 187 ~~~~~~l 193 (305)
T 2nzi_A 187 DQKTVEL 193 (305)
T ss_dssp EEEEEEE
T ss_pred eeeEEEE
Confidence 7666543
No 193
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.28 E-value=4.4e-11 Score=61.10 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=55.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|+.+.|.|.+.+.+.+. +.|++++..+... ...|.|.+++..|.|.|.|
T Consensus 8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~----------------~~~L~i~~v~~~D~G~Y~C 71 (204)
T 3sgj_C 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ----------------ASSYFIDAATVDDSGEYRC 71 (204)
T ss_dssp CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC----------------SSEEEESSCCGGGCEEEEE
T ss_pred CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC----------------ccEEEEecccccCCEEEEE
Confidence 5566556556788999999999999988775 9999986544211 1468999999999999999
Q ss_pred EEecCCCc
Q psy4613 81 IAKNSLGE 88 (96)
Q Consensus 81 ~~~~~~g~ 88 (96)
.+.+....
T Consensus 72 ~a~n~~~s 79 (204)
T 3sgj_C 72 QTQLSTLS 79 (204)
T ss_dssp EETTSBCC
T ss_pred EeCCCccc
Confidence 99875443
No 194
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.27 E-value=3.7e-13 Score=79.28 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+.. ..++.... ....|.|.++...|.|.|.|.
T Consensus 667 P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~-~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~ 738 (772)
T 3v2a_R 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKD-------GNRNLTIRRVRKEDEGLYTCQ 738 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcC-CCCeEEcC-------CCcEEEECcCCHHHCEEEEEE
Confidence 3444444456678899999999999999999999998765532 22222211 246799999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 739 a~N~~G~~~~~~~l 752 (772)
T 3v2a_R 739 ACSVLGCAKVEAFF 752 (772)
T ss_dssp --------------
T ss_pred EEeCCcceeEEEEE
Confidence 99999987665543
No 195
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.27 E-value=2e-10 Score=59.93 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=53.7
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEee--ccceeE--e---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVR--DQGDMV--I---------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
...+..+.+..|+.+.|.|.+.+.+.+.+.|++ .+..+. . ...++.... ......|.|.+++
T Consensus 139 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~ 213 (247)
T 2ghw_B 139 TQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSG-----SGTDFTLTISRLE 213 (247)
T ss_dssp EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEC-----SSSEEEEEECSCC
T ss_pred EccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEec-----CCCeEEEEECcCC
Confidence 334455668899999999999998888999998 332221 0 012332211 0124679999999
Q ss_pred CCCCeeEEEEEecCC
Q psy4613 72 KYDLGSYKCIAKNSL 86 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~ 86 (96)
..|.|.|.|.+.+..
T Consensus 214 ~~D~G~Y~C~a~~~~ 228 (247)
T 2ghw_B 214 PEDFAVYYCQQRSNW 228 (247)
T ss_dssp GGGCEEEEEEECSSS
T ss_pred HHHCEEEEEEEccCC
Confidence 999999999998753
No 196
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=99.27 E-value=3.1e-11 Score=71.83 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=63.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI------SSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
|.+...+....+..|..+.|.|.+.+.|.|.+.|++++..... ...+... ....|.|.++...|.
T Consensus 715 P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~---------~~~~L~i~~v~~~d~ 785 (816)
T 3dmk_A 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV---------EEGTLHVDNIQKTNE 785 (816)
T ss_dssp EEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEE---------ETTEEEECSCCGGGC
T ss_pred CceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEe---------cCCEEEECcCChhhC
Confidence 4444455566778899999999999999999999987543210 1111111 124699999999999
Q ss_pred eeEEEEEecCCCceEEEEEe
Q psy4613 76 GSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 76 g~y~c~~~~~~g~~~~~~~l 95 (96)
|.|.|.+.|..|.....+.+
T Consensus 786 G~Y~C~a~N~~G~~~~~v~~ 805 (816)
T 3dmk_A 786 GYYLCEAINGIGSGLSAVIM 805 (816)
T ss_dssp EEEEEEEECSSSSCEEEEEE
T ss_pred eEEEEEEEeCCCCCcEEEEE
Confidence 99999999999988776654
No 197
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.27 E-value=8.4e-12 Score=63.22 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+.. .+..|+.+.|.|.+.+.+. .+.|++++..+.... . . .........|.|.+++..|.|.|.|
T Consensus 5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~---~--~--~~~~~~~~~L~i~~v~~~D~G~Y~C 75 (196)
T 2d3v_A 5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDT---Q--N--PLEPKNKARFSIPSMTEHHAGRYRC 75 (196)
T ss_dssp BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEE---E--C--CCSSTTEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccc---c--c--ccCCccccEEEeccCChhHCeEEEE
Confidence 3666655553 6889999999999887655 899999865442110 0 0 0000134679999999999999999
Q ss_pred EEecCCC
Q psy4613 81 IAKNSLG 87 (96)
Q Consensus 81 ~~~~~~g 87 (96)
.+.+..|
T Consensus 76 ~a~n~~g 82 (196)
T 2d3v_A 76 YYYSPAG 82 (196)
T ss_dssp EEEETTE
T ss_pred EEeCCCC
Confidence 9988654
No 198
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.27 E-value=8.9e-11 Score=59.49 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=48.0
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+..|..+.|.|.+.+. .+.+.|++++..+........... .. .....|.|.+++..|.|.|.|.+.|..+
T Consensus 110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~--~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHA--RG--SSRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC----------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccC--CC--cceeEEEecccCcccCeEEEEEEEeCCC
Confidence 457789999999999887 779999998765421111111100 00 0236799999999999999999999765
No 199
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.26 E-value=1.2e-10 Score=59.67 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=53.7
Q ss_pred eeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 10 LVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
...+..|+.+.|.|.+.+ .|.|.+.|++++..+. ...++.+...... ....|.|.++...|.|.|.|.+.|.
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~-~~~~~~~~~~~~~---g~~~L~I~~v~~~D~G~Y~C~a~Ng 83 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDG 83 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEEC-SSSSCEEEECTTT---CEEEEEESCCCGGGCEEEEEEEEET
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECc-cCCCEEEEEeCCC---CEEEEEECCCChhhCEEEEEEEECC
Confidence 466888999999999864 6889999999976653 3444444321111 2357999999999999999999883
No 200
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.7e-11 Score=63.03 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=58.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
+.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+... ....|.|.++...|.|.|.|.
T Consensus 19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~ 83 (218)
T 3k0w_A 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG---------------NTSELIFNAVHVKDAGFYVCR 83 (218)
T ss_dssp CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC---------------CSSEEEETTCCGGGCEEEEEE
T ss_pred CEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC---------------CCCEEEEccCChhhCeEeEEE
Confidence 45666777788999999999999999888999999986544211 124689999999999999999
Q ss_pred EecCCCc
Q psy4613 82 AKNSLGE 88 (96)
Q Consensus 82 ~~~~~g~ 88 (96)
+.+..|.
T Consensus 84 ~~n~~~~ 90 (218)
T 3k0w_A 84 VNNNFTF 90 (218)
T ss_dssp EECTTCC
T ss_pred EEcCCCC
Confidence 9998664
No 201
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.26 E-value=6e-12 Score=68.22 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=64.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEee-------ecccceeEEeeccceeEeccc-ceEEEEeccccceEEEEEEEccCCCC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVE-------AYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~-------~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
|.+...+..+.+..|+.+.|.|.+. +.+.+.+.|++++........ ...+.. ....|.|.+++..
T Consensus 19 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~ 91 (339)
T 3o4o_C 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-------QDGALWLLPALQE 91 (339)
T ss_dssp EEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-------ETTEEEESSBCTT
T ss_pred HhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe-------eCCeEEECCCCcc
Confidence 5566667778899999999999997 778889999998765322211 222211 2257999999999
Q ss_pred CCeeEEEEEecCCCceEEEEEe
Q psy4613 74 DLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 74 d~g~y~c~~~~~~g~~~~~~~l 95 (96)
|.|.|.|.+.+..|.....+.|
T Consensus 92 D~G~Y~C~~~n~~g~~~~~~~l 113 (339)
T 3o4o_C 92 DSGTYVCTTRNASYCDKMSIEL 113 (339)
T ss_dssp CCEEEECCEEETTEEEEEEEEE
T ss_pred cCEEEEEEEECCcceEEEEEEE
Confidence 9999999999988765555443
No 202
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.26 E-value=9.8e-11 Score=63.29 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=46.4
Q ss_pred ecCCCcEEEEEEeeecc-cc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAYP-KS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~-~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+.+ .+ .+.|++++..+... ............+.....|.|..+...|.|.|.|.+.|..+...
T Consensus 232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~ 310 (327)
T 2wng_A 232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTE-TASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAV 310 (327)
T ss_dssp CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEE-ECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCE
T ss_pred cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCc-ccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCc
Confidence 56899999999999854 44 79999987665321 11111111112222346788888999999999999999988643
No 203
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=99.25 E-value=2.2e-10 Score=53.48 Aligned_cols=78 Identities=15% Similarity=0.339 Sum_probs=53.7
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~ 64 (96)
.+...+..+.+..|++++|.|.+.+.+ .+.+.|++... ..+. . ..++..... .....
T Consensus 3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~ 77 (113)
T 1dlf_L 3 VMTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS-----GTDFT 77 (113)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEE
T ss_pred cEEEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEcc-----CCEEE
Confidence 345566778899999999999987655 36899987531 1111 1 123322210 02357
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++..|+|.|.|.+.+.
T Consensus 78 L~I~~v~~~DsG~Y~C~~~~~ 98 (113)
T 1dlf_L 78 LKISRVEAEDLGVYFCSQSTH 98 (113)
T ss_dssp EEECSCCGGGCEEEEEEECSS
T ss_pred EEECCCChHHCEEEEEEEecC
Confidence 999999999999999999875
No 204
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.25 E-value=2.5e-11 Score=63.21 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=55.7
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc-ceEEE-Ee---------cc-ccce---EEEEEEEccCCCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVE-SI---------SR-SIFD---FKMRLTIKKITKY 73 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~-~~---------~~-~~~~---~~~~l~i~~~~~~ 73 (96)
....+..|..+.|.|.+.+.|.|.+.|++++..+..... ..... .. .. .... ....|.|.+++..
T Consensus 144 ~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 223 (250)
T 2fbo_J 144 EVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT 223 (250)
T ss_dssp SEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGG
T ss_pred ceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcc
Confidence 345566799999999999989999999998654321100 00000 00 00 0000 1147999999999
Q ss_pred CCeeEEEEEecCCC---ceEEEEEe
Q psy4613 74 DLGSYKCIAKNSLG---EVESSIRL 95 (96)
Q Consensus 74 d~g~y~c~~~~~~g---~~~~~~~l 95 (96)
|.|.|.|.+.|..| .....+.|
T Consensus 224 D~G~Y~C~a~N~~g~~g~~~~~~~l 248 (250)
T 2fbo_J 224 DAGRVWCELATGQGELDADRSSTIL 248 (250)
T ss_dssp GCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred cCEEEEEEecCCccccCccceeEEE
Confidence 99999999999555 44444443
No 205
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.25 E-value=4.8e-11 Score=68.55 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=59.2
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
...+..|+.+.|.|.+.+.|.|.+.|++++..+... .+... ....|.|.++...|.|.|.|.+.|..|..
T Consensus 335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~-~~~~~---------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~ 404 (527)
T 3qs9_E 335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE-QKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQF 404 (527)
T ss_dssp EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECB-CCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEE
T ss_pred cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC-ccccc---------CCcEEEEecCCcccCEEEEEEEEeCCCcE
Confidence 356778999999999999999999999987655322 21110 12468899999999999999999999987
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
...+.|
T Consensus 405 ~~~~~L 410 (527)
T 3qs9_E 405 TKMFTL 410 (527)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766655
No 206
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.25 E-value=1.3e-10 Score=60.92 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=54.1
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccc----eeEEeecc--ceeE--ec---------ccceEEEEeccccceEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS----INYWVRDQ--GDMV--IS---------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~~--~~~~--~~---------~~~~~~~~~~~~~~~~~~~l 65 (96)
.+...+....+..|+++.|.|.+.+.+.+ .+.|++.. .... .. ..++..... .....|
T Consensus 135 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L 209 (253)
T 3uzq_A 135 VMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGS-----RTDFTL 209 (253)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred eEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCC-----CCEEEE
Confidence 34445556778899999999999987776 89999842 1111 00 122222110 024579
Q ss_pred EEccCCCCCCeeEEEEEecCC
Q psy4613 66 TIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~~ 86 (96)
.|.+++..|+|.|.|.+.+..
T Consensus 210 ~I~~v~~~DsG~Y~C~~~n~~ 230 (253)
T 3uzq_A 210 TINPVEADDVATYFCQRSNEV 230 (253)
T ss_dssp EESSCCGGGCEEEEEEECSSS
T ss_pred EECCCCHHHCEEEEEEEccCC
Confidence 999999999999999998854
No 207
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4
Probab=99.24 E-value=3.9e-10 Score=52.07 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=55.4
Q ss_pred ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEec---ccc-eEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVIS---SER-YEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
....+..|..+.|.|.+.+ .+.|.+.|.+.+...... ... +.......+ .....|.+..+...|.|.|.|.+.
T Consensus 22 S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n--~s~fiL~f~~V~~sDsG~YrCsAn 99 (122)
T 1xau_A 22 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS--VPVFVLHFKPIHLSDNGSYSCSTN 99 (122)
T ss_dssp EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSS--SCEEEEEETTCCGGGCEEEEEEEE
T ss_pred ccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCC--ceeEEEEEeeEEEcCCccEEEEee
Confidence 4456889999999999976 579999999875432211 111 111111111 134689999999999999999999
Q ss_pred cCCCceE
Q psy4613 84 NSLGEVE 90 (96)
Q Consensus 84 ~~~g~~~ 90 (96)
+..|...
T Consensus 100 ~~~g~ie 106 (122)
T 1xau_A 100 FNSQVIN 106 (122)
T ss_dssp ETTEEEE
T ss_pred CCCCcee
Confidence 9877543
No 208
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.24 E-value=2.8e-10 Score=59.44 Aligned_cols=80 Identities=21% Similarity=0.407 Sum_probs=57.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe---------cccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI---------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++... ..+. ...++..... .....|.|.+
T Consensus 6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~ 80 (250)
T 3esu_F 6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGS-----GTDYSLTISN 80 (250)
T ss_dssp CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCC-----CCEEEEEEcc
Confidence 45566777889999999999999998999999998531 1110 0123322110 0235799999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|.|.|.|.+.+..+
T Consensus 81 v~~~D~G~Y~C~~~n~~~ 98 (250)
T 3esu_F 81 LEQEDIGTYFCQQGNTLP 98 (250)
T ss_dssp CCGGGCEEEEEEECSSSS
T ss_pred CChhhCEEEEEEEeeCCC
Confidence 999999999999988644
No 209
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.24 E-value=4.1e-10 Score=57.74 Aligned_cols=81 Identities=17% Similarity=0.335 Sum_probs=51.1
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
.+..|..+.|.|.+.+.|.|.+.|+++++..................+.....+ .+...|.|.|.|.+.|..|....
T Consensus 127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l---~v~~~d~g~Y~C~a~n~~g~~~~ 203 (222)
T 3sbw_C 127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL---RINTTTNEIFYCTFRRLDPEENH 203 (222)
T ss_dssp EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEE---EEECCTTCEEEEEEEETTTTEEE
T ss_pred eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEE---EEeccCCcEEEEEEEeCccceee
Confidence 467899999999999999999999998444332111111111111111112222 33467899999999999998776
Q ss_pred EEEe
Q psy4613 92 SIRL 95 (96)
Q Consensus 92 ~~~l 95 (96)
.+.|
T Consensus 204 ~~~l 207 (222)
T 3sbw_C 204 TAEL 207 (222)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 210
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.1e-10 Score=61.14 Aligned_cols=74 Identities=24% Similarity=0.281 Sum_probs=59.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.+.+ .+.|++++..+... ...|.|.+++..|.|.|.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------------~~~l~i~~~~~~d~G~Y~ 64 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------------TPSYRITSASVNDSGEYR 64 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------------SSEEEESSCCGGGCEEEE
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------------CCeEEEecCCcccCeEEE
Confidence 5788888888889999999999999888877 89999986544211 145889999999999999
Q ss_pred EEEecCCCceE
Q psy4613 80 CIAKNSLGEVE 90 (96)
Q Consensus 80 c~~~~~~g~~~ 90 (96)
|.+.+..+...
T Consensus 65 C~~~~~~~s~~ 75 (262)
T 3rjd_A 65 CQRGLSGRSDP 75 (262)
T ss_dssp EEESSSCCCCC
T ss_pred EEEecCCcccc
Confidence 99988766543
No 211
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.24 E-value=2.6e-10 Score=59.12 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=54.1
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI---------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
...+..+.+..|+.+.|.|.+.+.+.+.+.|+++.. ..+. ...++...... ......|.|.+++
T Consensus 131 ~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~ 207 (238)
T 2p1y_A 131 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK---REKKLSLHIADSQ 207 (238)
T ss_dssp EEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET---TTTEEEEEETTCC
T ss_pred EccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecC---CCCeEEEEEcCCC
Confidence 334455678899999999999998889999998631 1110 11223222100 0023679999999
Q ss_pred CCCCeeEEEEEecC
Q psy4613 72 KYDLGSYKCIAKNS 85 (96)
Q Consensus 72 ~~d~g~y~c~~~~~ 85 (96)
..|+|.|.|.+.|.
T Consensus 208 ~~D~G~Y~C~a~n~ 221 (238)
T 2p1y_A 208 PGDSATYFCAAIDT 221 (238)
T ss_dssp GGGCEEEEEEEEET
T ss_pred HHHCEEEEEEEeeC
Confidence 99999999999987
No 212
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.24 E-value=3.9e-10 Score=59.20 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=54.6
Q ss_pred eEEecCceeeecCCCcEEEEEEeeeccc-ceeEEeecc--ceeE--e---------cccceEEEEeccccceEEEEEEEc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQ--GDMV--I---------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~--~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
.+...+....+..|+.++|.|.+.+.+. +.+.|++.. .... . ...++...... ....|.|.
T Consensus 151 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~ 225 (256)
T 3juy_B 151 VLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSG-----TDFTLTIT 225 (256)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-----TEEEEEES
T ss_pred EEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccC-----CEEEEEEC
Confidence 3444556677889999999999988775 899998731 1111 0 11233222111 24569999
Q ss_pred cCCCCCCeeEEEEEecCCC
Q psy4613 69 KITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g 87 (96)
+++..|+|.|.|.+.+...
T Consensus 226 ~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 226 RVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SCCGGGCSEEEEEECCSSC
T ss_pred CCCHhHCEEEEEEEeeCCC
Confidence 9999999999999988543
No 213
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.24 E-value=5.6e-11 Score=65.61 Aligned_cols=81 Identities=27% Similarity=0.437 Sum_probs=60.2
Q ss_pred cCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
.+....+..|+.+.|.|.+.+.|.+.+.|++++..+.....+.... ....|.|.++...|.|.|.|.+.|..
T Consensus 227 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~n~~ 298 (403)
T 3laf_A 227 RPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL--------GGSNLLISNVTDDDSGTYTCVVTYKN 298 (403)
T ss_dssp CCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE--------TTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC--------CccEEEEeCCCHHHCEEEEEEEEcCC
Confidence 3444567789999999999999999999999865543222232221 12468999999999999999999988
Q ss_pred CceEEEEEe
Q psy4613 87 GEVESSIRL 95 (96)
Q Consensus 87 g~~~~~~~l 95 (96)
|.......|
T Consensus 299 g~~~~~~~l 307 (403)
T 3laf_A 299 ENISASAEL 307 (403)
T ss_dssp EEEEEEEEE
T ss_pred CceEEEEEE
Confidence 876555443
No 214
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Probab=99.24 E-value=2.5e-11 Score=57.25 Aligned_cols=90 Identities=20% Similarity=0.395 Sum_probs=57.3
Q ss_pred EEecCceeeecCCCcEEEEEEeeeccc----ceeEEeeccce------eE-e-c------------ccceEEEEeccccc
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPK----SINYWVRDQGD------MV-I-S------------SERYEVESISRSIF 59 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~~~------~~-~-~------------~~~~~~~~~~~~~~ 59 (96)
+..++..+.+..|+++.|.|.+.+.+. ..+.|++.+.. .. . . ..+..+... ...
T Consensus 8 v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~~ 85 (126)
T 1eaj_A 8 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSN--DLK 85 (126)
T ss_dssp ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCS--CGG
T ss_pred EECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcc--ccc
Confidence 334556678899999999999887554 35899886421 11 1 0 011111110 000
Q ss_pred eEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 60 ~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
.....|.|.+++..|+|.|.|.+.+..+.....+.|
T Consensus 86 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L 121 (126)
T 1eaj_A 86 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121 (126)
T ss_dssp GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred CCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEE
Confidence 012569999999999999999999987765555543
No 215
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.23 E-value=2.6e-11 Score=65.69 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=51.5
Q ss_pred eecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 12 GAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+..|+.+.|.|.+.+.| .+.+.|++++..+.....++... ...|.|.++...|.|.|.|.+.|.
T Consensus 139 ~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~---------~~~L~I~~v~~~D~G~Y~C~a~n~ 204 (329)
T 3oq3_B 139 GTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS---------GQNLIIHNPELEDSGRYDCYVHYD 204 (329)
T ss_dssp TSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE---------TTEEEECSCCGGGCEEEEEEEEEC
T ss_pred EEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC---------CCEEEEeecChhhCEEEEEEEEec
Confidence 356699999999999988 89999999876654333343322 257899999999999999999986
No 216
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.23 E-value=6.9e-11 Score=60.97 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=50.3
Q ss_pred eeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..|..+.+.|.+.+ .|.|.+.|+++++........ ......... ...+.+..++..|.|.|.|.+.|..|.
T Consensus 127 ~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~-~~~~~~~g~---~~v~s~l~v~~~d~G~YtC~a~N~~g~ 202 (226)
T 4f80_A 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEA-PVVADGVGL---YAVAASVIMRGSSGEGVSCTIRSSLLG 202 (226)
T ss_dssp EEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEEC-CCEECTTSC---EEEEEEEEECC----CEEEEEEETTTT
T ss_pred eeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCce-EEEECCCCc---EEEEEEEEechhcCcEEEEEEEeCCCC
Confidence 345677999999999988 589999999865544321111 111111111 122334456778999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 203 ~~~~~~v 209 (226)
T 4f80_A 203 LEKTASI 209 (226)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 7777655
No 217
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.23 E-value=3.4e-11 Score=61.11 Aligned_cols=77 Identities=26% Similarity=0.477 Sum_probs=58.1
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEe-----------cccceEEEEeccccceEEEEEEEccC
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVI-----------SSERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++++..+.. ...+... ....|.|.++
T Consensus 5 ~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~---------~~~~L~i~~~ 75 (209)
T 1nbq_A 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF---------LPTGITFKSV 75 (209)
T ss_dssp CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE---------ETTEEECSCC
T ss_pred EEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe---------eccEEEEeeC
Confidence 4556677778889999999999999888899999987654211 0112221 1256899999
Q ss_pred CCCCCeeEEEEEecCCC
Q psy4613 71 TKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g 87 (96)
+..|.|.|.|.+.+..|
T Consensus 76 ~~~d~G~Y~C~~~~~~g 92 (209)
T 1nbq_A 76 TREDTGTYTCMVSEEGG 92 (209)
T ss_dssp CTTSCSEEEEEEEETTS
T ss_pred CHHHCcEEEEEEecCCC
Confidence 99999999999998755
No 218
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.23 E-value=3.9e-10 Score=59.88 Aligned_cols=80 Identities=16% Similarity=0.315 Sum_probs=57.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|+.+.|.|.+.+.+.+.+.|+++.. ..... ..++..... .....|.|.+
T Consensus 14 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~ 88 (276)
T 3auv_A 14 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-----GTDFTLTISS 88 (276)
T ss_dssp CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESS
T ss_pred eEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc-----CCeEEEEEcc
Confidence 35556677789999999999999988888999998532 11110 123332210 0235799999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|.|.|.|.+.+..+
T Consensus 89 v~~~DsG~Y~C~~~n~~~ 106 (276)
T 3auv_A 89 LQPEDFATYYCQQHYTTP 106 (276)
T ss_dssp CCGGGCEEEEEEECSSSS
T ss_pred CChhhCEEEEEEEecCCc
Confidence 999999999999988643
No 219
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.23 E-value=4.7e-11 Score=60.96 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=51.3
Q ss_pred cCCCcEEEEEEeeecccc--eeEEeeccceeEecccce-EEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 14 PIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERY-EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
..|..+.|.|.+.+.+++ .+.|++++..+. ..... .........+...+.|.|......|.|.|.|.+.+......
T Consensus 128 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~-~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~ 206 (212)
T 1q0x_L 128 LSTAKATLVCTITDFYPGVVTVDWKVDGTPVT-AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN 206 (212)
T ss_dssp HTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC-TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred ccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC-CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence 358899999999885443 899999865542 11110 01111111222446788888888999999999999866554
Q ss_pred EEE
Q psy4613 91 SSI 93 (96)
Q Consensus 91 ~~~ 93 (96)
..+
T Consensus 207 ~~v 209 (212)
T 1q0x_L 207 KTL 209 (212)
T ss_dssp EEE
T ss_pred eee
Confidence 443
No 220
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=99.23 E-value=7.1e-10 Score=52.50 Aligned_cols=78 Identities=23% Similarity=0.409 Sum_probs=53.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccc----e-eEecccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----D-MVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
+...+..+.+..|++++|.|.+.+. +.+.+.|++... . +.....++........ ....|.|.+++.+|+|
T Consensus 3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~~~~---~~~~L~I~~~~~~DsG 79 (121)
T 2i24_N 3 VDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGS---KSFSLRINDLTVKDSG 79 (121)
T ss_dssp EEEECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEETTT---TEEEEEECSCCGGGCE
T ss_pred cEECCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEecCCC---CEEEEEECCCChhhCE
Confidence 5566677889999999999998764 356899998531 1 1112344443221111 2467999999999999
Q ss_pred eEEEEEec
Q psy4613 77 SYKCIAKN 84 (96)
Q Consensus 77 ~y~c~~~~ 84 (96)
.|.|.+..
T Consensus 80 ~Y~C~~~~ 87 (121)
T 2i24_N 80 TYRCKPES 87 (121)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999864
No 221
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.23 E-value=2.5e-10 Score=59.06 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=55.6
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--e--eEe---------cccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--D--MVI---------SSERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~--~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+..++..+.+..|+.+.|.|.+.+.+.+.+.|++... . ... ...++..... .....|.|.++
T Consensus 27 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v 101 (237)
T 3sob_L 27 MTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-----GTDFTLTISSL 101 (237)
T ss_dssp EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred EEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcC-----CCEEEEEECCC
Confidence 4445566788999999999999988888999988421 1 110 0123333211 02467999999
Q ss_pred CCCCCeeEEEEEecCCC
Q psy4613 71 TKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g 87 (96)
+..|.|.|.|.+.+..+
T Consensus 102 ~~~D~G~Y~C~~~~~~~ 118 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTP 118 (237)
T ss_dssp CGGGCEEEEEEECSSSS
T ss_pred ChhhCeEEEEeeccCCc
Confidence 99999999999987553
No 222
>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}
Probab=99.23 E-value=2.4e-10 Score=53.08 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccc-----eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-----INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
+|.+...+.. .+..|..++|.|.....+.. .+.|++++..+.. .. ....+.|..++..|+
T Consensus 8 kP~l~~~p~~-~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~-------~~-------~~~~l~i~~v~~~ds 72 (108)
T 4hwn_A 8 APILRAVPSA-EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS-------RG-------LSSEFQIPTASEDHS 72 (108)
T ss_dssp CCEEEEESCS-SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE-------EE-------SCCEEEESSCCGGGC
T ss_pred CCEEEecCCC-cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC-------CC-------cccEEEeCccCcccC
Confidence 3566555443 47789999999998764443 3889998654421 01 235689999999999
Q ss_pred eeEEEEEecCCC
Q psy4613 76 GSYKCIAKNSLG 87 (96)
Q Consensus 76 g~y~c~~~~~~g 87 (96)
|.|.|.+.+..+
T Consensus 73 G~Y~C~~~~~~~ 84 (108)
T 4hwn_A 73 GSYWCEAATEDN 84 (108)
T ss_dssp EEEEEEEECTTS
T ss_pred eEEEEEEEeCCC
Confidence 999999998654
No 223
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.23 E-value=2.4e-10 Score=58.15 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=53.7
Q ss_pred cCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 14 PIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
..+..+.|.|.+.+. |.+.+.|++++..+. ...++.+.... ....|.|.+++..|.|.|.|.+.+..|.....
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~-~~~~~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~ 88 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIR-YSDRVKTGVTG-----EQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECC-CCSSEEEEEET-----TEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEcc-CCCeEEEEEeC-----CEEEEEECCCCcccCEEEEEEEecCCcceEEE
Confidence 356667777777664 578999999875543 33444433211 23569999999999999999999988876655
Q ss_pred EEe
Q psy4613 93 IRL 95 (96)
Q Consensus 93 ~~l 95 (96)
+.|
T Consensus 89 ~~l 91 (212)
T 2r15_A 89 VDL 91 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 224
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.22 E-value=1.2e-10 Score=59.38 Aligned_cols=77 Identities=16% Similarity=0.244 Sum_probs=54.7
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+..++ .+.+..|+.+.|.|.+. +.+.+.|++.. ... .. ...++...... ....|.|.+
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~ 74 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSG-----NTASLTVSG 74 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEEES
T ss_pred eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccC-----CEEEEEECC
Confidence 344556 78899999999999988 78899999842 111 11 11233332211 246799999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|.|.|.|.+.+..+
T Consensus 75 v~~~D~G~Y~C~~~~~~~ 92 (211)
T 3tv3_L 75 LQTDDEAVYYCGSLVGNW 92 (211)
T ss_dssp CCGGGCEEEEEEEEETTT
T ss_pred CChhHCEEEEEEEecCCC
Confidence 999999999999998766
No 225
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.7e-11 Score=66.93 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=63.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCe-eEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG-SYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++.......... .......|.|.++...|.| .|.
T Consensus 158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~--------~~~~~~~L~i~~v~~~D~G~~Y~ 229 (347)
T 2ifg_A 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--------GGLPSLGLTLANVTSDLNRKNVT 229 (347)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--------CCSSEEEEEEESCCSTTTTCCEE
T ss_pred CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc--------eecccceEEEeeCChHHCCCeEE
Confidence 3666666677788999999999999999999999999865432111110 0113578999999999999 999
Q ss_pred EEEecCCCceEEEE
Q psy4613 80 CIAKNSLGEVESSI 93 (96)
Q Consensus 80 c~~~~~~g~~~~~~ 93 (96)
|.+.+..|.....+
T Consensus 230 C~a~n~~g~~~~~~ 243 (347)
T 2ifg_A 230 CWAENDVGRAEVSV 243 (347)
T ss_dssp ECCEETTEECCEEE
T ss_pred EEEEcCCCCEEEEE
Confidence 99999877655443
No 226
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.22 E-value=5e-11 Score=59.89 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=53.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+.. .+..|+.+.|.|.+.+ +.+.+.|++++.... . ....|.|.+++..|.|.|.|
T Consensus 8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~---------~-------~~~~L~i~~v~~~D~G~Y~C 69 (184)
T 2gi7_A 8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY---------Q-------DQAVLFIPAMKRSLAGRYRC 69 (184)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE---------E-------SSSEEEESSCCGGGCEEEEE
T ss_pred CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc---------C-------cccEEEECcCChhhCceEEE
Confidence 3566655554 6889999999999877 777899999864410 0 12568999999999999999
Q ss_pred EEecCCC
Q psy4613 81 IAKNSLG 87 (96)
Q Consensus 81 ~~~~~~g 87 (96)
.+.+..|
T Consensus 70 ~a~n~~g 76 (184)
T 2gi7_A 70 SYQNGSL 76 (184)
T ss_dssp EEEETTE
T ss_pred EEEcCCC
Confidence 9998654
No 227
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=99.22 E-value=9e-11 Score=55.93 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=53.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce---eEecc-----cceEEEEeccccceEEEEEEEccCCCCC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD---MVISS-----ERYEVESISRSIFDFKMRLTIKKITKYD 74 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d 74 (96)
+..++..+.+..|++++|.|.+.+. +.+.+.|++.... ++... .++...............|.|.+++..|
T Consensus 6 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D 85 (127)
T 2jju_A 6 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPAD 85 (127)
T ss_dssp EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGG
T ss_pred EEeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHH
Confidence 4456677889999999999998765 4668999986421 22111 1222110000000013569999999999
Q ss_pred CeeEEEEEecC
Q psy4613 75 LGSYKCIAKNS 85 (96)
Q Consensus 75 ~g~y~c~~~~~ 85 (96)
+|.|.|.+.+.
T Consensus 86 sG~Y~C~~~~~ 96 (127)
T 2jju_A 86 AGTYYCVKFRK 96 (127)
T ss_dssp CEEEEEEEEEC
T ss_pred CEEEEEEEEcC
Confidence 99999998875
No 228
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.22 E-value=7.2e-11 Score=59.48 Aligned_cols=77 Identities=16% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+.. .+..|+.++|.|.+.+ +.+.+.|++++..+....... ........|.|.+++..|.|.|.|
T Consensus 4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y~C 74 (188)
T 1oll_A 4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQYSC 74 (188)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS-------CTTCCEEEEEESSCCGGGCEEEEE
T ss_pred CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccccc-------CCCcceeEEEeCcCCcccCeEEEE
Confidence 4666665554 6889999999999865 446788998865543111000 001134679999999999999999
Q ss_pred EEecCC
Q psy4613 81 IAKNSL 86 (96)
Q Consensus 81 ~~~~~~ 86 (96)
.+.+..
T Consensus 75 ~~~~~~ 80 (188)
T 1oll_A 75 IYRVGE 80 (188)
T ss_dssp EEEETT
T ss_pred EecCCC
Confidence 997753
No 229
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.22 E-value=2.6e-10 Score=59.51 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=57.4
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|+++.|.|.+.+.+.+.+.|++... ..... ..++..... .....|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~ 77 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-----GTDFTLSINS 77 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEEEEESS
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC-----CCEEEEEECC
Confidence 45566777889999999999999988888999998531 11110 123332210 0235799999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|+|.|.|.+.+..+
T Consensus 78 v~~~D~G~Y~C~~~n~~~ 95 (242)
T 2znx_A 78 VETEDFGMYFCQQSNSXP 95 (242)
T ss_dssp CCGGGCEEEEEEECSSSS
T ss_pred CChHHCEEEEEeEecCCc
Confidence 999999999999988643
No 230
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.22 E-value=2.2e-10 Score=59.96 Aligned_cols=81 Identities=17% Similarity=0.336 Sum_probs=56.2
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeecc--ceeE--e---------cccceEEEEeccccceEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQ--GDMV--I---------SSERYEVESISRSIFDFKM 63 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~~~~--~---------~~~~~~~~~~~~~~~~~~~ 63 (96)
|.+...+..+.+..|+.+.|.|.+.+.+ .+.+.|++.. ..+. . ...++..... ....
T Consensus 39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~ 113 (254)
T 2c1o_A 39 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGS-----GTDF 113 (254)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEE
T ss_pred eeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecC-----CCEE
Confidence 3455556678899999999999998877 3889999743 1110 0 0123332211 0235
Q ss_pred EEEEccCCCCCCeeEEEEEecCCC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.|.+++..|.|.|.|.+.+..+
T Consensus 114 ~L~I~~v~~~D~G~Y~C~a~n~~~ 137 (254)
T 2c1o_A 114 TLKISRVEAEDLGIYYCVQGSHFP 137 (254)
T ss_dssp EEEESSCCGGGCSEEEEEECSSSS
T ss_pred EEEECcCCcccCEEEEEEEEcCcc
Confidence 799999999999999999988754
No 231
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.22 E-value=5.4e-10 Score=58.75 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=58.2
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe----------cccceEEEEeccccceEEEEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI----------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
..+..++..+.+..|+.+.|.|.+.+.+.+.+.|++... ..+. ...++....... .....|.|
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I 80 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKS---DSSFHLRK 80 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETT---TTEEEEEE
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCC---CCEEEEEE
Confidence 356677778889999999999999998999999987421 1110 012222211110 12467999
Q ss_pred ccCCCCCCeeEEEEEecCCC
Q psy4613 68 KKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g 87 (96)
.+++..|+|.|.|.+.+..+
T Consensus 81 ~~v~~~DsG~Y~C~~~~~~~ 100 (256)
T 3tf7_C 81 ASVHRSDSAVYFCAVSAKGT 100 (256)
T ss_dssp SSCCGGGCSEEEEEEECTTC
T ss_pred CCCCcccCEEEEEEEecCCC
Confidence 99999999999999988654
No 232
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.21 E-value=6.9e-10 Score=58.43 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=53.1
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccc-----eeEEee--ccceeE--ec---------ccceEEEEeccccceEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKS-----INYWVR--DQGDMV--IS---------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~--~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~l 65 (96)
+...+..+.+..|+.+.|.|.+.+.+.+ .+.|++ .+..+. .. ..++..... .....|
T Consensus 124 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L 198 (256)
T 1nqb_A 124 LTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGS-----GTDFTL 198 (256)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred EEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEcc-----CCEEEE
Confidence 3344556678899999999999887765 899998 333221 00 123332211 024579
Q ss_pred EEccCCCCCCeeEEEEEecC
Q psy4613 66 TIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.+++..|.|.|.|.+.+.
T Consensus 199 ~I~~v~~~DsG~Y~C~a~~~ 218 (256)
T 1nqb_A 199 KISRVEAEDLGVYYCFQGSH 218 (256)
T ss_dssp EESSCCGGGCEEEEEEECSS
T ss_pred EECCCChHHCEEEEEEEccC
Confidence 99999999999999999874
No 233
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.21 E-value=1.5e-11 Score=62.78 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=52.6
Q ss_pred CCCcEEEEEEeeecc--cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 15 IDTDVTLECYVEAYP--KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
.|..+.|.|.+.+.+ .+.+.|++++..+................+.....|.|......|.|.|.|.+.+..+.....
T Consensus 125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~ 204 (211)
T 3tv3_L 125 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 204 (211)
T ss_dssp HTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEE
T ss_pred cCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEee
Confidence 599999999998853 468999998755421000000111111222244678888888889999999999988776655
Q ss_pred E
Q psy4613 93 I 93 (96)
Q Consensus 93 ~ 93 (96)
+
T Consensus 205 ~ 205 (211)
T 3tv3_L 205 V 205 (211)
T ss_dssp E
T ss_pred c
Confidence 4
No 234
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.21 E-value=4e-10 Score=58.74 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=56.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-ec-------------ccceEEEEeccccceEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-IS-------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~-------------~~~~~~~~~~~~~~~~~~ 63 (96)
+.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++... ... .. ..++.+.... ....
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~ 77 (246)
T 4dzb_B 2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS----LTLS 77 (246)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEE----TTEE
T ss_pred CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecC----CCEE
Confidence 356667778889999999999999988888999998210 110 00 0233332210 0235
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++..|.|.|.|.+.+.
T Consensus 78 ~L~I~~v~~~D~G~Y~C~~~~~ 99 (246)
T 4dzb_B 78 TLTVTSAHPEDSSFYICSARTS 99 (246)
T ss_dssp EEEECSCCGGGCEEEEEEECCS
T ss_pred EEEECCCCHHHCEEEEEEEecC
Confidence 7999999999999999999864
No 235
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.21 E-value=1.6e-11 Score=62.45 Aligned_cols=72 Identities=22% Similarity=0.445 Sum_probs=53.4
Q ss_pred eeecCCCcEEEEEE-eeecccceeEEeeccc-eeEeccc--------ceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 11 VGAPIDTDVTLECY-VEAYPKSINYWVRDQG-DMVISSE--------RYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 11 ~~~~~g~~~~l~c~-~~~~~~~~~~w~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
..+..|..+.|.|. +.+.|.+.+.|++++. .+..... ++.... ....|.|.++...|.|.|.|
T Consensus 114 ~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C 186 (212)
T 1f97_A 114 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP-------KSGDLIFDPVTAFDSGEYYC 186 (212)
T ss_dssp SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECT-------TTCCEEESSCCGGGCEEEEE
T ss_pred cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecC-------CCceEEEEecChhhCcEEEE
Confidence 34678999999999 7888999999999876 4432111 111100 13568999999999999999
Q ss_pred EEecCCCce
Q psy4613 81 IAKNSLGEV 89 (96)
Q Consensus 81 ~~~~~~g~~ 89 (96)
.+.|..|..
T Consensus 187 ~a~n~~g~~ 195 (212)
T 1f97_A 187 QAQNGYGTA 195 (212)
T ss_dssp EEECSSSCC
T ss_pred EEccccCCc
Confidence 999998876
No 236
>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=99.21 E-value=9.3e-10 Score=53.53 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=55.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|++++|.|.+.......+.|++.. . ..+.. ..++..... .....|.|.+
T Consensus 2 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~-----~~~~sL~I~~ 76 (143)
T 3u6r_L 2 ELTQSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGS-----GTDFTLTISN 76 (143)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEECS
T ss_pred eEEECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEcc-----CCEEEEEEcc
Confidence 3566677788999999999999887666789999852 1 21111 123333210 1246799999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|+|.|.|.+.+.
T Consensus 77 l~~~DsG~Y~C~~~~~ 92 (143)
T 3u6r_L 77 LEPEDFAVYYCQQRSD 92 (143)
T ss_dssp CCGGGCEEEEEEECSS
T ss_pred CcccCCEEEEEEEecC
Confidence 9999999999998764
No 237
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=99.21 E-value=2.2e-09 Score=49.98 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=54.4
Q ss_pred CceeeecCCCcEEEEEEeeecccc-eeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
+..+.+..|+++.|.|.+...... .+.|++... ..+. . ..++.+.... ......|.|.+++..
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~~~~~ 84 (113)
T 1zox_A 8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ---RDFIFTVTMEDLRMS 84 (113)
T ss_dssp CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEET---TTTEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECC---cCCEEEEEEccCCHH
Confidence 456788999999999998764433 589998642 1111 1 1233322110 012467999999999
Q ss_pred CCeeEEEEEecCCCceEEEEE
Q psy4613 74 DLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 74 d~g~y~c~~~~~~g~~~~~~~ 94 (96)
|+|.|.|.+.+........+.
T Consensus 85 DsG~Y~C~v~~~~~~~~~~v~ 105 (113)
T 1zox_A 85 DAGIYWCGITKGGLDPMFKVT 105 (113)
T ss_dssp GCEEEEEEECCSSSCCEEEEE
T ss_pred HCEEEEEeeEcCCCCccEEEE
Confidence 999999999887544444443
No 238
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.20 E-value=2.6e-11 Score=61.69 Aligned_cols=87 Identities=24% Similarity=0.324 Sum_probs=58.0
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEeccc--c-eEEEEeccccceEEEEEEEccCCCCCCee
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE--R-YEVESISRSIFDFKMRLTIKKITKYDLGS 77 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 77 (96)
+|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+..... . ..... . ........+.|.++...|.|.
T Consensus 9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~i~~~~~~d~G~ 86 (212)
T 2v9r_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLL-P-SGSLFFLRIVHGRKSRPDEGV 86 (212)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEEC-T-TSCEEESSCCCCSSCCCSCEE
T ss_pred CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEe-c-CCcEEEEEEEecCCCcccCeE
Confidence 35667777778899999999999999989999999998655432111 0 01110 0 110011224445678999999
Q ss_pred EEEEEecCCCce
Q psy4613 78 YKCIAKNSLGEV 89 (96)
Q Consensus 78 y~c~~~~~~g~~ 89 (96)
|.|.+.+..|..
T Consensus 87 Y~C~~~n~~g~~ 98 (212)
T 2v9r_A 87 YVCVARNYLGEA 98 (212)
T ss_dssp EEEEEEETTEEE
T ss_pred EEEEEECCCCce
Confidence 999999876643
No 239
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.20 E-value=1.3e-10 Score=61.13 Aligned_cols=84 Identities=11% Similarity=0.139 Sum_probs=46.5
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEeccc--------------ceEEEEeccccceEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVISSE--------------RYEVESISRSIFDFK 62 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~~~~--------------~~~~~~~~~~~~~~~ 62 (96)
+|.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++.. . ....... +..... ......
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~ 78 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTY---GSTRKN 78 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEE---CC--CC
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEee---cCCCCe
Confidence 356667777888999999999999998888899998832 1 1111000 000000 000022
Q ss_pred EEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..|.|.+++..|+|.|.|.+.+..+
T Consensus 79 ~~L~I~~v~~~DsG~Y~C~~~~~~~ 103 (259)
T 3omz_A 79 LRMILRNLIENDSGVYYCATWDQNY 103 (259)
T ss_dssp CEEEESSCCGGGCEEEEEEEECTTS
T ss_pred EEEEECCCCcccCEEEEEEEeeCCc
Confidence 4699999999999999999988654
No 240
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.20 E-value=3.8e-10 Score=57.58 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=55.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+.. +..+.+..|+.+.|.|.+.+.+.+.+.|+++. ... .. ...++..... .....|.|.++
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v 77 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS-----GTDFTLTIDPV 77 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSC
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEec-----CCEEEEEECCC
Confidence 444 66778999999999999998888899998842 111 10 0123332210 02357999999
Q ss_pred CCCCCeeEEEEEecCCCc
Q psy4613 71 TKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g~ 88 (96)
+..|.|.|.|.+.+..+.
T Consensus 78 ~~~D~G~Y~C~~~~~~~~ 95 (210)
T 1lk3_L 78 EADDTAIYFCQQSWNGPL 95 (210)
T ss_dssp CGGGCEEEEEEECSSSSC
T ss_pred CHHHCeEEEEEEEcCCCc
Confidence 999999999999987653
No 241
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.20 E-value=9.9e-10 Score=61.67 Aligned_cols=76 Identities=11% Similarity=0.172 Sum_probs=52.9
Q ss_pred ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEecccceEEEEeccc-cceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRS-IFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
....+..|+.+.|.|.+.+ .|.+.+.|++++..+. ............. .......|.|.++...|.|.|.|.+.|.
T Consensus 235 ~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 312 (423)
T 3qs7_E 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE-EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312 (423)
T ss_dssp TEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCC-GGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred CceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEcc-ccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence 4566788999999999998 6678999999876542 1111111110000 0113467999999999999999999887
No 242
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.20 E-value=3.3e-11 Score=60.05 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=55.2
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+....+..|+.+.|.|.+.+.+.+ .+.|++++..+.. ....|.|.+++..|.|.|.
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------------~~~~L~i~~v~~~d~G~Y~ 67 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------------TNSSLNIVNAKFEDSGEYK 67 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------------CSSEEEECSCCGGGCEEEE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------------CceEEEEeccceecCEEEE
Confidence 3566666666778999999999999887775 6899998654321 1256899999999999999
Q ss_pred EEEecCCCceE
Q psy4613 80 CIAKNSLGEVE 90 (96)
Q Consensus 80 c~~~~~~g~~~ 90 (96)
|.+.+..+...
T Consensus 68 C~~~~~~~s~~ 78 (176)
T 1f2q_A 68 CQHQQVNESEP 78 (176)
T ss_dssp EECTTSSCCCC
T ss_pred EEcCCcccccc
Confidence 99988665443
No 243
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A
Probab=99.20 E-value=3.3e-10 Score=53.28 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=52.8
Q ss_pred CceeeecCCCcEEEEEEeee--cccceeEEeeccceeEec------------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEA--YPKSINYWVRDQGDMVIS------------SERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
+..+.+..|+++.|.|.+.+ .....+.|++....+... ..|..+. ....|.|.+++..
T Consensus 10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~--------~~~sL~I~~v~~~ 81 (117)
T 3q0h_A 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG--------PGLGLTLQSLTVN 81 (117)
T ss_dssp SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEEC--------STTCEEECSCCGG
T ss_pred cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeC--------CceEEEEeeCChh
Confidence 34567889999999999887 334478999875332211 1122110 1246999999999
Q ss_pred CCeeEEEEEec-CCCceEEEEEe
Q psy4613 74 DLGSYKCIAKN-SLGEVESSIRL 95 (96)
Q Consensus 74 d~g~y~c~~~~-~~g~~~~~~~l 95 (96)
|.|.|.|.+.. ..|.....+.|
T Consensus 82 D~G~Y~C~v~~~~~g~~~~~~~L 104 (117)
T 3q0h_A 82 DTGEYFCIYHTYPDGTYTGRIFL 104 (117)
T ss_dssp GCEEEEEEEEEETTCCEEEEEEE
T ss_pred hCEEEEEEEEECCCCCeEEEEEE
Confidence 99999999754 45665554443
No 244
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.20 E-value=3.5e-11 Score=61.42 Aligned_cols=75 Identities=12% Similarity=0.231 Sum_probs=49.1
Q ss_pred cCCCcEEEEEEeeec-ccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 14 PIDTDVTLECYVEAY-PKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
..|..+.|.|.+.+. |.+ .+.|++++..+... .............+...+.|.|..+...|.|.|.|.+.+....
T Consensus 124 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 124 LATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp HTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred ccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 468899999999874 443 79999987554211 0000000111112224567999999999999999999997663
No 245
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.20 E-value=1.3e-10 Score=61.13 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=52.4
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEee--ccceeE--ec---------ccceEEEEeccccceEEEEEEEccCCCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVR--DQGDMV--IS---------SERYEVESISRSIFDFKMRLTIKKITKYD 74 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~--~~~~~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 74 (96)
+..+.+..|+.+.|.|.+.+.+.+.+.|++ .+..+. .. ..++..... .....|.|.+++..|
T Consensus 146 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~~~D 220 (257)
T 1f3r_B 146 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-----GTDYTLTISSLQPED 220 (257)
T ss_dssp TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----BTEEEEEECSCCGGG
T ss_pred CCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC-----CCEEEEEECCCChhh
Confidence 345567889999999999988888999998 333221 10 123332210 123579999999999
Q ss_pred CeeEEEEEecCC
Q psy4613 75 LGSYKCIAKNSL 86 (96)
Q Consensus 75 ~g~y~c~~~~~~ 86 (96)
+|.|.|.+.|..
T Consensus 221 ~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 221 VATYFCYQYNNG 232 (257)
T ss_dssp CSEEEEEEESSS
T ss_pred CEEEEEEEeCCC
Confidence 999999999863
No 246
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.20 E-value=4.6e-10 Score=58.58 Aligned_cols=80 Identities=14% Similarity=0.332 Sum_probs=56.2
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~ 64 (96)
.+...+..+.+..|+.+.|.|.+.+.+ .+.+.|++... ..... ..++..... .....
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~ 77 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS-----GTDFT 77 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-----TTEEE
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccC-----CCEEE
Confidence 355666778899999999999998877 68899988421 11110 123332210 02357
Q ss_pred EEEccCCCCCCeeEEEEEecCCC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
|.|.+++..|.|.|.|.+.+..+
T Consensus 78 L~I~~v~~~D~G~Y~C~~~n~~~ 100 (247)
T 1svz_A 78 LKISRVEAEDLGIYYCFQGSHFP 100 (247)
T ss_dssp EEESSCCGGGCEEEEEEECSSSS
T ss_pred EEECCCCHHHCEEEEEEEccCCc
Confidence 99999999999999999988644
No 247
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.20 E-value=3.3e-10 Score=58.84 Aligned_cols=80 Identities=15% Similarity=0.280 Sum_probs=56.8
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc----cceeEEeecc--ce--eEec---------ccceEEEEeccccceEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~~~l 65 (96)
.+...+..+.+..|+.+.|.|.+.+.+ .+.+.|+++. .. .... ..++..... .....|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L 77 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-----RTDFTL 77 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEec-----CCeEEE
Confidence 455667778899999999999999887 7789999852 11 1110 123333210 023579
Q ss_pred EEccCCCCCCeeEEEEEecCCC
Q psy4613 66 TIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.+++..|.|.|.|.+.+..+
T Consensus 78 ~I~~v~~~D~G~Y~C~~~n~~~ 99 (240)
T 1moe_A 78 IIDPVEADDVATYYCQQTNEDP 99 (240)
T ss_dssp EESSCCGGGCEEEEEEECSSSS
T ss_pred EEcCCChhhCEEEEEEEccCCc
Confidence 9999999999999999998744
No 248
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=99.20 E-value=1e-09 Score=50.91 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=52.7
Q ss_pred EEecCceeeecCCCcEEEEEE-eeecc-cceeEEeecccee--Ee-c--------ccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECY-VEAYP-KSINYWVRDQGDM--VI-S--------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~-~~~~~-~~~~~w~~~~~~~--~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+.. +..+.+..|+++.|.|. +.+.+ .+.+.|++..... +. . ..++....... .....|.|.++
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~~v 79 (109)
T 1pew_A 4 LNQ-PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRS---SNSASLTISGL 79 (109)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETT---TTEEEEEECSC
T ss_pred EEC-CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccC---CCEEEEEECCC
Confidence 445 56778999999999999 77654 4789999875211 11 0 12333321111 12467999999
Q ss_pred CCCCCeeEEEEEecC
Q psy4613 71 TKYDLGSYKCIAKNS 85 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~ 85 (96)
+..|+|.|.|.+.+.
T Consensus 80 ~~~DsG~Y~C~~~~~ 94 (109)
T 1pew_A 80 KTEDEADYYCQSYDA 94 (109)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred ChhhCEEEEEEEEeC
Confidence 999999999999874
No 249
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.19 E-value=2.4e-11 Score=62.07 Aligned_cols=75 Identities=19% Similarity=0.319 Sum_probs=49.5
Q ss_pred cCCCcEEEEEEeee-cccc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 14 PIDTDVTLECYVEA-YPKS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 14 ~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
..|..+.|.|.+.+ .|.+ .+.|++++..+... .............+...+.|.|.++...|.|.|.|.+.|....
T Consensus 125 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3d9a_L 125 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 202 (213)
T ss_dssp HHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred cCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence 35889999999987 5555 79999986554311 0000000011112223568999999999999999999997655
No 250
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.19 E-value=6.1e-10 Score=58.46 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=53.9
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccc-eeEEeecc--ceeE--ec---------ccceEEEEeccccceEEEEEEEc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQ--GDMV--IS---------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~--~~~~--~~---------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
.+...+....+..|+.+.|.|.+.+.+.+ .+.|++.. .... .. ..++..... .....|.|.
T Consensus 143 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~ 217 (257)
T 3gkz_A 143 VLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGS-----GTSYSLTIS 217 (257)
T ss_dssp CEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEES
T ss_pred EEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecC-----CCEEEEEEC
Confidence 34445566778899999999999887777 89999742 1111 00 123222110 023579999
Q ss_pred cCCCCCCeeEEEEEecCC
Q psy4613 69 KITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~ 86 (96)
+++..|+|.|.|.+.+..
T Consensus 218 ~v~~~D~G~Y~C~~~~~~ 235 (257)
T 3gkz_A 218 SMEAEDAASYFCHQWSSF 235 (257)
T ss_dssp SCCGGGCEEEEEEECSSS
T ss_pred CCChHHCEEEEEEEccCC
Confidence 999999999999998743
No 251
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=99.19 E-value=8.6e-10 Score=51.67 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=53.6
Q ss_pred EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc----eeEe-c-----------ccceEEEEeccccceEEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG----DMVI-S-----------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~----~~~~-~-----------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
+...+..+.+..|++++|.|.+... +...+.|++... ..+. . ..++...... ......|.
T Consensus 3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~ 79 (116)
T 1tvd_A 3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHIL---TQKAFHLV 79 (116)
T ss_dssp EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEG---GGTEEEEE
T ss_pred eecCCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEec---CCCEEEEE
Confidence 4566777889999999999998754 456799987531 1111 0 1233322110 11235799
Q ss_pred EccCCCCCCeeEEEEEecC
Q psy4613 67 IKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~ 85 (96)
|.+++..|+|.|.|.+.+.
T Consensus 80 I~~~~~~DsG~Y~C~~~~~ 98 (116)
T 1tvd_A 80 ISPVRTEDSATYYCAFTLP 98 (116)
T ss_dssp ESSCCGGGCEEEEEEEECT
T ss_pred EccCChHHCEEEEEEEeCC
Confidence 9999999999999999874
No 252
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.19 E-value=2.3e-10 Score=65.31 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=53.2
Q ss_pred eeeecCCCcEEEEEEeeecccc--eeEEeeccceeEecccceE-EEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYE-VESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
...+..|+.+.|.|.+.+.+.+ .+.|++++..+.. ..... ........+...+.|.|..+...|.|.|.|.+.+..
T Consensus 123 ~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~ 201 (523)
T 2rcj_C 123 SSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA-GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 201 (523)
T ss_pred cccccCCCceEEEEEeccccCCceEEEEecCCCCCCC-ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecC
Confidence 3345568899999999987654 8999998755431 11111 000111122234679999999999999999999987
Q ss_pred CceE
Q psy4613 87 GEVE 90 (96)
Q Consensus 87 g~~~ 90 (96)
+...
T Consensus 202 ~~~~ 205 (523)
T 2rcj_C 202 STVE 205 (523)
T ss_pred cccc
Confidence 7543
No 253
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=99.19 E-value=4.9e-10 Score=52.84 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=52.6
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+..++. +.+..|+++.|.|.+.+.+ ...+.|++... ..+.. ..++..... .....|.
T Consensus 3 ~v~q~~~-~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~~~L~ 76 (120)
T 1oaq_L 3 VVTQESA-LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GNKAALT 76 (120)
T ss_dssp CEEECSE-EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE-----TTEEEEE
T ss_pred cEEcCCc-EEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecC-----CCeEEEE
Confidence 3455554 8899999999999987654 56899987531 11110 123332210 1235799
Q ss_pred EccCCCCCCeeEEEEEecC
Q psy4613 67 IKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~ 85 (96)
|.+++.+|+|.|.|.+.+.
T Consensus 77 I~~~~~~DsG~Y~C~~~~~ 95 (120)
T 1oaq_L 77 ITGAQTEDEAIYFCALWYS 95 (120)
T ss_dssp EESCCGGGCEEEEEEEEET
T ss_pred ECCCChhhCeEEEEEEccC
Confidence 9999999999999998865
No 254
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.19 E-value=4e-10 Score=57.29 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=52.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+...+. ..+..|+.++|.|.+.+ +.+.+.|++++..+.......... .......|.|.+++..|.|.|.|.
T Consensus 9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~-----~~~~~~~l~I~~v~~~D~G~Y~C~ 81 (201)
T 1nkr_A 9 PSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHH-----DGVSKANFSISRMTQDLAGTYRCY 81 (201)
T ss_dssp CEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEE-----TTEEEEEEEESSCCGGGCEEEEEE
T ss_pred CeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecC-----CCCceEEEEeccCCcccCeEEEEe
Confidence 55555444 55789999999999864 677899999875443110000000 001346799999999999999999
Q ss_pred EecC
Q psy4613 82 AKNS 85 (96)
Q Consensus 82 ~~~~ 85 (96)
+.+.
T Consensus 82 a~~~ 85 (201)
T 1nkr_A 82 GSVT 85 (201)
T ss_dssp EEBT
T ss_pred EecC
Confidence 9753
No 255
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.19 E-value=1e-09 Score=58.44 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=52.6
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeec--cceeE--e---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD--QGDMV--I---------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~--~~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
..++..+.+..|+.+.|.|.+.+.+ +.+.|++. +..+. . ...++..... .....|.|.+++
T Consensus 166 ~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~ 239 (282)
T 1qok_A 166 TQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGS-----GTSYSLTISRME 239 (282)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEESSCC
T ss_pred ecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecC-----CCEEEEEEccCC
Confidence 3344556788999999999999888 89999983 33221 0 0123332211 024579999999
Q ss_pred CCCCeeEEEEEecC
Q psy4613 72 KYDLGSYKCIAKNS 85 (96)
Q Consensus 72 ~~d~g~y~c~~~~~ 85 (96)
..|.|.|.|.+.+.
T Consensus 240 ~~DsG~Y~C~a~~~ 253 (282)
T 1qok_A 240 AEDAATYYCQQRSS 253 (282)
T ss_dssp GGGCEEEEEEECSS
T ss_pred hhHCEEEEEEEeeC
Confidence 99999999999874
No 256
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.18 E-value=1.5e-10 Score=59.15 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=48.6
Q ss_pred eeecCCCcEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 11 VGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+..|+.+.|.|.+.+. +.+.+.|++++..+... . ....|.|.++...|.|.|.|.+.|..+
T Consensus 98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-------~-------~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 161 (204)
T 3sgj_C 98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-------H-------HNSDFYIPKATLKDSGSYFCRGLVGSK 161 (204)
T ss_dssp SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------E-------ECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-------c-------CCceEEECcCCcccCEEEEEEEEeCCC
Confidence 456789999999999665 55789999987554211 0 235689999999999999999999533
No 257
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.18 E-value=1e-09 Score=57.20 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=55.7
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEe-c----------ccceEEEEeccccceEEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVI-S----------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~-~----------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
.+..++..+.+..|+.+.|.|.+.+.+.+.+.|++.. .. ... . ..++.+.... .....|.|
T Consensus 3 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~I 78 (245)
T 3nfj_J 3 TIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQ----DRQFILSS 78 (245)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEE----TTEEEEEE
T ss_pred eeeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecC----CCEEEEEE
Confidence 4566777888999999999999998888999999832 11 110 0 1222222110 02457999
Q ss_pred ccCCCCCCeeEEEEEec
Q psy4613 68 KKITKYDLGSYKCIAKN 84 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~ 84 (96)
.+++..|.|.|.|.+.+
T Consensus 79 ~~v~~~D~G~Y~C~~~~ 95 (245)
T 3nfj_J 79 KKLLLSDSGFYLCAWSV 95 (245)
T ss_dssp SSCCGGGCEEEEEEEEC
T ss_pred CCCChhhCEEEEEEEee
Confidence 99999999999999988
No 258
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.18 E-value=2.6e-10 Score=56.32 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=49.9
Q ss_pred eeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 11 VGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
..+..|..+.|.|.+. +.+.+.+.|++++..+.... ....|.|.++...|.|.|.|.+.|..|.
T Consensus 95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 159 (170)
T 3ry4_A 95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------------LDPTFSIPQANHSHSGDYHCTGNIGYTL 159 (170)
T ss_dssp SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES--------------SCCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred ceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC--------------CCCeEEEEeccccCCEEEEEEEEeCcCc
Confidence 4567899999999984 45668999999865543111 1256899999999999999999998875
No 259
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.18 E-value=6.9e-10 Score=56.63 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=54.7
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc---cceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+.. +..+.+..|+.+.|.|.+.+.+ .+.+.|+++. ... .. ...++..... .....|.|
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I 77 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GDKAALTI 77 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEEE
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEee-----CCEEEEEE
Confidence 444 6677899999999999998876 4789998853 121 10 0123332210 02357999
Q ss_pred ccCCCCCCeeEEEEEecCCC
Q psy4613 68 KKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g 87 (96)
.+++..|.|.|.|.+.+..+
T Consensus 78 ~~v~~~D~G~Y~C~~~~~~~ 97 (212)
T 1q0x_L 78 TGAQTEDEAIYFCALWSNNK 97 (212)
T ss_dssp SSCCGGGCEEEEEEEECSSC
T ss_pred CCCCccCCEEEEEEEecCch
Confidence 99999999999999998755
No 260
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=65.35 Aligned_cols=74 Identities=23% Similarity=0.224 Sum_probs=55.6
Q ss_pred eeecCCCcEEEEEEeeecccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 11 VGAPIDTDVTLECYVEAYPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
..+..|..+.|.|.+.+.|.| .+.|++++..+... ... . ....+.|..++..|.|.|.|.+.|..|..
T Consensus 222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~-~~~---~-------~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~ 290 (308)
T 4fom_A 222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG-LLA---S-------DNTLHFVHPLTFNYSGVYICKVTNSLGQR 290 (308)
T ss_dssp CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS-CBC---S-------TTEEECCSCCCSCCCSEEEEEEEETTEEE
T ss_pred eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc-EEE---c-------CCeEEEECCCChhhCEEEEEEEEeCCCcE
Confidence 445678899999999999988 68999986554311 100 0 12456678899999999999999999988
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
...+.|
T Consensus 291 ~~~~~l 296 (308)
T 4fom_A 291 SDQKVI 296 (308)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 777665
No 261
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.18 E-value=5.1e-10 Score=58.65 Aligned_cols=79 Identities=14% Similarity=0.307 Sum_probs=54.8
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc-----cceeEEeeccc--e--eEec---------ccceEEEEeccccceEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQG--D--MVIS---------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~~--~--~~~~---------~~~~~~~~~~~~~~~~~~~l 65 (96)
+..++..+.+..|+.+.|.|.+.+.+ .+.+.|++++. . .... ..++..... .....|
T Consensus 37 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L 111 (252)
T 3bkj_L 37 MTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGS-----GTDFTL 111 (252)
T ss_dssp EEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred EEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEcc-----CCEEEE
Confidence 44556667789999999999998876 57899998531 1 1100 123332210 023579
Q ss_pred EEccCCCCCCeeEEEEEecCCC
Q psy4613 66 TIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.+++..|.|.|.|.+.+..+
T Consensus 112 ~I~~v~~~D~G~Y~C~~~~~~~ 133 (252)
T 3bkj_L 112 RISRVEAEDLGVYYCFQASLVP 133 (252)
T ss_dssp EESSCCGGGCEEEEEEECSBSS
T ss_pred EECCCCcccCEEEEEEEEcCCc
Confidence 9999999999999999988644
No 262
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.18 E-value=1.3e-11 Score=67.16 Aligned_cols=84 Identities=21% Similarity=0.272 Sum_probs=36.7
Q ss_pred eecCCCcEEEEEEee----ecccceeEEeeccceeEecccceEEEE----eccccceEEEEEEEccCCCCCC-eeEEEEE
Q psy4613 12 GAPIDTDVTLECYVE----AYPKSINYWVRDQGDMVISSERYEVES----ISRSIFDFKMRLTIKKITKYDL-GSYKCIA 82 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~-g~y~c~~ 82 (96)
.+..|..+.|.|.+. +.|.+.+.|++++..+.....+..... ...........|.|.++...|. |.|.|.+
T Consensus 237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a 316 (349)
T 4dep_C 237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316 (349)
T ss_dssp --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEE
T ss_pred EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEE
Confidence 677899999999998 457889999998765432111111100 0001111345699999999999 9999999
Q ss_pred ecCCCceEEEEEe
Q psy4613 83 KNSLGEVESSIRL 95 (96)
Q Consensus 83 ~~~~g~~~~~~~l 95 (96)
.|..|.....+.|
T Consensus 317 ~N~~G~~~~~~~l 329 (349)
T 4dep_C 317 RSAKGEVAKAAKV 329 (349)
T ss_dssp ECSSCEEEEECC-
T ss_pred EcCCCcEEEEEEE
Confidence 9999987766543
No 263
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=99.18 E-value=1.1e-09 Score=52.81 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=52.6
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc---cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+..++. +.+.+|++++|.|.+...+ .+.+.|++... ..+.. ..++..... .....|.
T Consensus 8 ~v~q~~~-v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~-----~~~~sL~ 81 (135)
T 1p4b_L 8 VVTQESA-LTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-----GDKAALT 81 (135)
T ss_dssp CEECCSE-EEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEE-----TTEEEEE
T ss_pred eEEECCc-EEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcC-----CCEEEEE
Confidence 3455554 8899999999999987654 56899997532 11110 123332210 0235799
Q ss_pred EccCCCCCCeeEEEEEecC
Q psy4613 67 IKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~ 85 (96)
|.+++..|+|.|.|.+.+.
T Consensus 82 I~~v~~~DsG~Y~C~~~~~ 100 (135)
T 1p4b_L 82 ITGAQTEDEAIYFCALWYS 100 (135)
T ss_dssp EESCCGGGCEEEEEEEECS
T ss_pred ECCCChhHCEEEEEEEecC
Confidence 9999999999999999865
No 264
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.17 E-value=6.9e-11 Score=64.95 Aligned_cols=80 Identities=29% Similarity=0.471 Sum_probs=59.2
Q ss_pred CCeEEecCceeee---cCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCC-CCC
Q psy4613 1 HPVIHVPNQLVGA---PIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITK-YDL 75 (96)
Q Consensus 1 ~p~~~~~~~~~~~---~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~ 75 (96)
+|.+...+..... ..|+.+.|.|.+.+.|.+.+.|++++..+... ..++... ...|.|.++.. .|.
T Consensus 4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~---------~~~L~i~~~~~~~D~ 74 (382)
T 1cs6_A 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV---------AGDLVISNPVKAKDA 74 (382)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE---------TTEEEEESCCHHHHC
T ss_pred CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEee---------CCeEEEecccccccC
Confidence 3666666655554 68999999999999899999999987655322 2333322 24688888886 999
Q ss_pred eeEEEEEecCCCce
Q psy4613 76 GSYKCIAKNSLGEV 89 (96)
Q Consensus 76 g~y~c~~~~~~g~~ 89 (96)
|.|.|.+.+..|..
T Consensus 75 G~Y~C~a~n~~g~~ 88 (382)
T 1cs6_A 75 GSYQCVATNARGTV 88 (382)
T ss_dssp EEEEEEEEETTEEE
T ss_pred EEEEEEEEcCCcEE
Confidence 99999999987743
No 265
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.17 E-value=8.8e-10 Score=55.87 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=54.9
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
.+..|..+.|.|.+.+.|.|.+.|++++..... ...... .. ....+.+..+...|.|.|.|.+.|..|....
T Consensus 114 ~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~-----~~~~~~-~~--~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~ 185 (202)
T 3bp6_B 114 EVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT-----SHIRTP-EG--LYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185 (202)
T ss_dssp ECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEE-----EEEECT-TS--CEEEEEEEEECCCTTCCEEEEEEETTTTEEE
T ss_pred ecCCCCeEEEEEEccccCCceEEEEeCCCCccC-----ceeeCC-CC--CEEEEEEEEEEcCCCCEEEEEEEcCCccccc
Confidence 456899999999999999999999987543321 011111 11 1244567778888999999999999998877
Q ss_pred EEEe
Q psy4613 92 SIRL 95 (96)
Q Consensus 92 ~~~l 95 (96)
.+.|
T Consensus 186 ~~~l 189 (202)
T 3bp6_B 186 SAII 189 (202)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7655
No 266
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.17 E-value=1.5e-09 Score=58.05 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=56.4
Q ss_pred eeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..|+.+.|.|.+. +.|.+.+.|++++..+. ...++........ ....|.|.++...|.|.|.|.+.+..+.
T Consensus 116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~-~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~ 191 (312)
T 2y23_A 116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-EGPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDGKAT 191 (312)
T ss_dssp EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEEC-SSSSCEEEEETTT---TEEEEEESCCCGGGCEEEEEEEESSSCE
T ss_pred ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECe-eCCcEEEEEccCC---CEEEEEEccCCcccCEeEEEEEEeCCce
Confidence 56788899999999998 78899999999876543 3344444332111 2356999999999999999999875544
Q ss_pred e
Q psy4613 89 V 89 (96)
Q Consensus 89 ~ 89 (96)
.
T Consensus 192 ~ 192 (312)
T 2y23_A 192 N 192 (312)
T ss_dssp E
T ss_pred E
Confidence 3
No 267
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.17 E-value=8.3e-10 Score=56.78 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=51.6
Q ss_pred ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+. |.| .+.|++++..+... ...... ....+...+.|.|......| |.|.|.+.|..|...
T Consensus 139 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~--~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~ 214 (222)
T 1q9r_B 139 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH--TFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 214 (222)
T ss_dssp CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE--EEEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred ccCCCcEEEEEEEccEECCCCEEEEecCCeEcceE--eccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence 4578999999999985 888 99999886443111 111110 11122244678998888889 999999999888654
Q ss_pred EE
Q psy4613 91 SS 92 (96)
Q Consensus 91 ~~ 92 (96)
..
T Consensus 215 ~~ 216 (222)
T 1q9r_B 215 VD 216 (222)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 268
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}
Probab=99.16 E-value=1.2e-09 Score=52.64 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=54.2
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeec---cceeE---ecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD---QGDMV---ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
...+..+.+..|++++|.|...+. ...+.|++. +..+. ....++..... .....|.|.+++.+|+|.|
T Consensus 22 ~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~-----~~~~~L~I~~~~~~Dsg~Y 95 (134)
T 3kg5_A 22 WQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQN-----ESLATLTIQGIRFEDNGIY 95 (134)
T ss_dssp EEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEEC-----SSEEEEEECSCCTTTCEEE
T ss_pred EEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEcc-----CCEEEEEECCCCcCcCEEE
Confidence 345566789999999999998764 578899987 22221 12345544321 1346899999999999999
Q ss_pred EEEEecC
Q psy4613 79 KCIAKNS 85 (96)
Q Consensus 79 ~c~~~~~ 85 (96)
.|.+.+.
T Consensus 96 ~C~~~~~ 102 (134)
T 3kg5_A 96 FCQQKCN 102 (134)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 9999875
No 269
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.16 E-value=8.2e-11 Score=64.93 Aligned_cols=76 Identities=26% Similarity=0.525 Sum_probs=58.2
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
..+..|..+.|.|.+.+.|.+.+.|++++..+.. ....... ....|.|.++...|.|.|.|.+.|..|...
T Consensus 232 ~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~--~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 302 (404)
T 3p3y_A 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS--DKAKFEN-------FNKALRITNVSEEDSGEYFCLASNKMGSIR 302 (404)
T ss_dssp EEEETTSCEEEECCBCCSSCCEEEEEETTBCCCT--TTEEEEG-------GGTEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred ceEecCCCEEEEEEECCCCCCcEEEEECCEECCC--Ccccccc-------cCceEEEccCCHhHCEEEEEEEEeCCCcEE
Confidence 4577899999999999999999999998765532 1212211 125799999999999999999999988766
Q ss_pred EEEEe
Q psy4613 91 SSIRL 95 (96)
Q Consensus 91 ~~~~l 95 (96)
..+.|
T Consensus 303 ~~~~l 307 (404)
T 3p3y_A 303 HTISV 307 (404)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 270
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=99.16 E-value=2.5e-10 Score=53.33 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=53.8
Q ss_pred EecCceeeecCCCcEEEEEEeee-cccc----eeEEeecccee--Ee--c--------ccceEEEEeccccce--EEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEA-YPKS----INYWVRDQGDM--VI--S--------SERYEVESISRSIFD--FKMRL 65 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~-~~~~----~~~w~~~~~~~--~~--~--------~~~~~~~~~~~~~~~--~~~~l 65 (96)
..+.. +.+..|+.+.|.|.+.. .+.+ .+.|++.+... .. . ..+..+.. ..... ....|
T Consensus 5 ~~p~~-v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~sL 81 (118)
T 3udw_C 5 QAPTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA--ARLGAELRNASL 81 (118)
T ss_dssp ECCSE-EEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETT--CCTTSCCCBCCE
T ss_pred eCCCe-EEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEec--ccccCCCCCcEE
Confidence 33444 77899999999999853 3333 48999873221 10 0 11111110 00000 04579
Q ss_pred EEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613 66 TIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l 95 (96)
.|.+++..|.|.|.|.+.+ ..+.....+.|
T Consensus 82 ~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L 112 (118)
T 3udw_C 82 RMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112 (118)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEeecChHHCeEEEEEEEECCCCCccceEEE
Confidence 9999999999999999988 66655544443
No 271
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.16 E-value=1.2e-09 Score=63.08 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=56.5
Q ss_pred CceeeecCCCcEEEEEEee----ecccceeEEeeccceeEecccceE---EEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVE----AYPKSINYWVRDQGDMVISSERYE---VESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~----~~~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+....+..|..+.|.|.+. +.|.+.+.|++++..+........ +.... .......|.|.++...|.|.|.|
T Consensus 449 ~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C 526 (585)
T 2ocw_A 449 PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCD--ENSRLVSLTLNLVTRADEGWYWC 526 (585)
T ss_pred CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEec--CcccEEEEEECCCCcccCeEEEE
Confidence 3455688899999999986 667788999998766543211100 11100 01123689999999999999999
Q ss_pred EEecCCCceE
Q psy4613 81 IAKNSLGEVE 90 (96)
Q Consensus 81 ~~~~~~g~~~ 90 (96)
.+.|..|...
T Consensus 527 ~a~N~~G~~~ 536 (585)
T 2ocw_A 527 GVKQGHFYGE 536 (585)
T ss_pred EeEeCCCccE
Confidence 9999987544
No 272
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.16 E-value=6.1e-11 Score=60.03 Aligned_cols=72 Identities=10% Similarity=0.026 Sum_probs=42.8
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+..|+.+.|.|.+.+.+ +.+.|++++..+..... ...... .......|.|.+++..|.|.|.|.+.+..+
T Consensus 109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~--~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 109 PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTL--DSQLTP--SGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp --------CEEEEEESSCC-SEEEEEEC---CCEEEE--ECEECT--TSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred ccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccc--cccccc--CCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 3577899999999999887 89999998755421100 000000 001346799999999999999999998654
No 273
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=99.15 E-value=2.9e-09 Score=49.83 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=52.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeec-ccceeEEeecc----ceeE-e-c-----------ccceEEEEeccccceEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQ----GDMV-I-S-----------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~----~~~~-~-~-----------~~~~~~~~~~~~~~~~~~~l 65 (96)
+.. +..+.+..|++++|.|.+.+. +...+.|++.. ...+ . . ..++..... .....|
T Consensus 5 v~q-p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~-----~~~~~L 78 (115)
T 2otu_A 5 LTQ-SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSS-----GADRYL 78 (115)
T ss_dssp EEE-CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEE-----TTEEEE
T ss_pred EEc-CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEcc-----CCEEEE
Confidence 445 566788999999999998765 46689998742 1111 1 0 112222210 123579
Q ss_pred EEccCCCCCCeeEEEEEecCC
Q psy4613 66 TIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~~ 86 (96)
.|.+++.+|+|.|.|.+.+..
T Consensus 79 ~I~~~~~~Dsg~Y~C~~~~~~ 99 (115)
T 2otu_A 79 SISNIQPEDEAIYICGVGDTI 99 (115)
T ss_dssp EESSCCGGGCEEEEEEEEECC
T ss_pred EECCCChhHCEEEEEEEecCC
Confidence 999999999999999998653
No 274
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.15 E-value=7.9e-10 Score=58.46 Aligned_cols=81 Identities=20% Similarity=0.334 Sum_probs=57.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc------cceeEEeecc--ce--eEec---------ccceEEEEeccccceEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP------KSINYWVRDQ--GD--MVIS---------SERYEVESISRSIFDFK 62 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~------~~~~~w~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~~ 62 (96)
+.+...+..+.+..|+.+.|.|.+.+.+ .+.+.|++.. .. .+.. ..++..... ...
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-----~~~ 80 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGS-----GTD 80 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecC-----CCE
Confidence 3456667778899999999999998876 6789999852 11 1110 123333210 023
Q ss_pred EEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..|.|.+++..|.|.|.|.+.+..+
T Consensus 81 ~~L~I~~v~~~DsG~Y~C~~~~~~~ 105 (264)
T 2gjj_A 81 FTLTIGSVKAEDLAVYYCQQYSNYP 105 (264)
T ss_dssp EEEEESSCCGGGCEEEEEEECSSSS
T ss_pred EEEEECCCCHHHCEEEEEEEecCCc
Confidence 5799999999999999999988643
No 275
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.15 E-value=1.2e-09 Score=62.84 Aligned_cols=78 Identities=10% Similarity=0.156 Sum_probs=54.6
Q ss_pred cCceeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEec-cccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 7 PNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESIS-RSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
++....+..|+.+.|.|.+. +.|.+.+.|++++..+. ........... .........|.|.+++..|.|.|.|.+.|
T Consensus 233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N 311 (527)
T 3qs9_E 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALE-EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK 311 (527)
T ss_dssp SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCC-GGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETT
T ss_pred CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECC-CCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEe
Confidence 34556788999999999996 88899999999876543 11111111111 00111346799999999999999999988
Q ss_pred C
Q psy4613 85 S 85 (96)
Q Consensus 85 ~ 85 (96)
.
T Consensus 312 ~ 312 (527)
T 3qs9_E 312 H 312 (527)
T ss_dssp E
T ss_pred C
Confidence 6
No 276
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.15 E-value=8.8e-11 Score=60.10 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=49.4
Q ss_pred cCCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 14 PIDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 14 ~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
..+..+.|.|.+.+ .|.+ .+.|++++..+............ ...+...+.|.+......|.|.|.|.+.|..+....
T Consensus 134 ~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~-~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~ 212 (218)
T 3s96_B 134 LKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKE-GNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEK 212 (218)
T ss_dssp HHTTEEEEEEEEEEEBSSCCEEEEEETTEEC---------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEE
T ss_pred ccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCccccc-CCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccc
Confidence 44688999999988 4666 89999987655321111111110 112223455778888888899999999998877665
Q ss_pred EE
Q psy4613 92 SI 93 (96)
Q Consensus 92 ~~ 93 (96)
.+
T Consensus 213 ~~ 214 (218)
T 3s96_B 213 SL 214 (218)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 277
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*
Probab=99.15 E-value=1.2e-09 Score=51.19 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=53.3
Q ss_pred EEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc----eeEe--c--------ccceEEEEeccccceEEEEEEEc
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG----DMVI--S--------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~----~~~~--~--------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
+...+..+.+..|++++|.|.+.+. ..+.+.|++... ..+. . ..++.+.... ......|.|.
T Consensus 3 v~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~ 79 (116)
T 1fo0_A 3 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQK---PKSSIGLIIT 79 (116)
T ss_dssp EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEG---GGTEEEEEEC
T ss_pred cCcCCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeC---CCCEEEEEEC
Confidence 4556677889999999999998776 555899987531 1111 0 1233322111 1124679999
Q ss_pred cCCCCCCeeEEEEEec
Q psy4613 69 KITKYDLGSYKCIAKN 84 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~ 84 (96)
+++.+|+|.|.|.+.+
T Consensus 80 ~~~~~DsG~Y~C~~~~ 95 (116)
T 1fo0_A 80 ATQIEDSAVYFCAMRG 95 (116)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred CCChhhCEEEEEEEEc
Confidence 9999999999999987
No 278
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=99.15 E-value=1.2e-09 Score=51.01 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=52.1
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c-c-----------cceEEEEeccccceEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S-S-----------ERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~-~-----------~~~~~~~~~~~~~~~~~~l 65 (96)
.+...+..+.+..|++++|.|.+.....+.+.|++... ..+. . . .++..... ... .|
T Consensus 3 ~v~q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~-----~~~-~L 76 (112)
T 1fo0_B 3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV-----TDT-EL 76 (112)
T ss_dssp SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE-----ETT-EE
T ss_pred cEEeCCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcC-----CCC-eE
Confidence 34556677889999999999998765667899997531 1111 1 1 11111100 011 79
Q ss_pred EEccCCCCCCeeEEEEEecC
Q psy4613 66 TIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.+++.+|+|.|.|.+.+.
T Consensus 77 ~I~~~~~~Dsg~Y~C~~~~~ 96 (112)
T 1fo0_B 77 RLQVANMSQGRTLYCTCSAD 96 (112)
T ss_dssp EEEEESCCSCEEEEEEEESS
T ss_pred EEcCCCHhHCEEEEEEEEcC
Confidence 99999999999999999864
No 279
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.15 E-value=6.8e-11 Score=63.94 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=58.6
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEee----ccceeEeccc-ceEEEEec--cccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVR----DQGDMVISSE-RYEVESIS--RSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~----~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
....+..|+.+.|.|.+.+.|.+.+.|++ ++..+..... ........ .........|.|.++...|.|.|.|.
T Consensus 230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 309 (334)
T 1ry7_B 230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCL 309 (334)
T ss_dssp CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEE
T ss_pred CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEE
Confidence 44567889999999999999999999998 4333321111 00100000 00000123699999999999999999
Q ss_pred EecCCCceEEEEEe
Q psy4613 82 AKNSLGEVESSIRL 95 (96)
Q Consensus 82 ~~~~~g~~~~~~~l 95 (96)
+.|..|.....+.|
T Consensus 310 a~N~~G~~~~~~~l 323 (334)
T 1ry7_B 310 AGNSIGFSHHSAWL 323 (334)
T ss_dssp EEESSCCEEEEEEE
T ss_pred EeCCCCeEEEEEEE
Confidence 99999988777655
No 280
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.15 E-value=2.2e-10 Score=58.95 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=50.8
Q ss_pred ecCCCcEEEEEEeeec---cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 13 APIDTDVTLECYVEAY---PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~---~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
+..|+.+.|.|.+.+. +. +.+.|++++..+... ............+.....|.|.+++..|.|.|.|.+.+..+.
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~ 101 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTA-QTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP 101 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCC-EEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCc-ccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence 6789999999999886 33 689999987543211 110011111111223467999999999999999999987664
No 281
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.15 E-value=1.1e-09 Score=57.62 Aligned_cols=81 Identities=16% Similarity=0.323 Sum_probs=53.6
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Eec------------ccceEEEEeccccceEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VIS------------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~~------------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+...+....+..|+.++|.|.+.+. .+.+.|++... .. ... ..++..... ......|.
T Consensus 139 ~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~ 213 (256)
T 3tf7_C 139 AVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRT----TQEDFFLT 213 (256)
T ss_dssp CEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECC----SSSBCEEE
T ss_pred EEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeC----CCCeEEEE
Confidence 44555666777899999999999875 77899987421 11 100 111111110 01234799
Q ss_pred EccCCCCCCeeEEEEEecCCCc
Q psy4613 67 IKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
|.+++..|+|.|.|.+.+..|.
T Consensus 214 I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 214 LESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp ESSCCGGGCEEEEEEEEEETTE
T ss_pred ECCCCHHHCEEEEEEecCCCCc
Confidence 9999999999999999887553
No 282
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R
Probab=99.14 E-value=3.3e-09 Score=50.65 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=54.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c-----eeEe-c-c--------------cceEE-EEeccc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G-----DMVI-S-S--------------ERYEV-ESISRS 57 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~-----~~~~-~-~--------------~~~~~-~~~~~~ 57 (96)
+.+...+..+.+..|++++|.|...+.....+.|++.. . .++. . . .++.. .. .
T Consensus 5 ~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~---~ 81 (128)
T 1nez_G 5 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD---T 81 (128)
T ss_dssp CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE---T
T ss_pred CeeEECCCeEEEcCCCCEEEEEEeCccCCCcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeC---C
Confidence 56677777788999999999999876555789999742 1 1111 1 0 12222 11 1
Q ss_pred cceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 58 IFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 58 ~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
. ....|.|.+++.+|+|.|.|....
T Consensus 82 ~--~~~~L~I~~~~~~Dsg~YyCa~~~ 106 (128)
T 1nez_G 82 N--NKYVLTLNKFSKENEGYYFCSVIS 106 (128)
T ss_dssp T--TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred C--CEEEEEECCCCHHHCEEEEEEEcC
Confidence 1 235799999999999999999865
No 283
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=99.14 E-value=1e-09 Score=52.13 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=54.4
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
|.+..+ ..+.+..|++++|.|...+.. ...+.|++.. . ..+.. ..++.... ......|.
T Consensus 2 p~v~Qp-~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~-----~~~~~sL~ 75 (123)
T 3t0v_A 2 PVLTQS-PSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSK-----SGTSASLA 75 (123)
T ss_dssp CSBEEC-CCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEE
T ss_pred CccCcc-CeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEc-----cCCEEEEE
Confidence 667775 467899999999999987654 4689999742 1 11111 12333221 01246799
Q ss_pred EccCCCCCCeeEEEEEecCC
Q psy4613 67 IKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~~ 86 (96)
|.+++..|+|.|.|.+.+..
T Consensus 76 I~~l~~~DsG~Y~C~~~~~~ 95 (123)
T 3t0v_A 76 ISGLRSEDEADYYCLSWDDS 95 (123)
T ss_dssp ECSCCGGGCEEEEEEEEETT
T ss_pred ECCCCHHHCEEEEEEEEcCC
Confidence 99999999999999988653
No 284
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.14 E-value=1.1e-09 Score=56.16 Aligned_cols=86 Identities=21% Similarity=0.350 Sum_probs=55.1
Q ss_pred EecCceeeecCCCcEEEEEEeeeccc-----ceeEEeeccceeEec--------------ccceEEEEeccccceEEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPK-----SINYWVRDQGDMVIS--------------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~-----~~~~w~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l 65 (96)
..++..+.+..|+.+.|.|.+.+.+. ..+.|++++...... ..+..+.. .........|
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L 82 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK--DQLSLGNAAL 82 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECH--HHHTTTEEEE
T ss_pred ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEcc--ccccCCEEEE
Confidence 34566778899999999999876553 378999875222110 01111110 0000123579
Q ss_pred EEccCCCCCCeeEEEEEecCCCceEEEE
Q psy4613 66 TIKKITKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
.|.+++..|.|.|.|.+.+ .+.....+
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~-~~~~~~~~ 109 (222)
T 3sbw_C 83 QITDVKLQDAGVYRCMISY-GGADYKRI 109 (222)
T ss_dssp EESSCCGGGCEEEEEEEES-SSEEEEEE
T ss_pred EEcCcccccCeEEEEEEEe-CCCceeEE
Confidence 9999999999999999998 44444433
No 285
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.14 E-value=5.1e-10 Score=55.72 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=49.8
Q ss_pred eeecCCCcEEEEEEeeeccc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 11 VGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
..+..|..+.|.|.+.+.+. +.+.|++++..+... . ....|.|.++...|.|.|.|.+.|..+.
T Consensus 98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-------~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 162 (175)
T 1fnl_A 98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------H-------HNSDFHIPKATLKDSGSYFCRGLVGSKN 162 (175)
T ss_dssp SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------E-------ECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred ceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-------C-------CCCEEEEcccChhhCeEEEEEEEcCCCC
Confidence 45778999999999987665 499999986554211 0 2357899999999999999999997553
No 286
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.14 E-value=1.6e-10 Score=57.80 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=51.4
Q ss_pred eeeecCCCcEEEEEEeee--cccceeEEeeccceeE---------ecccceEEEEeccccceEEEEEEEccCCCCCCeeE
Q psy4613 10 LVGAPIDTDVTLECYVEA--YPKSINYWVRDQGDMV---------ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~--~~~~~~~w~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y 78 (96)
.+.+..|+.+.|.|.... .+.+.+.|++++..+. ....++.+. ....|.|.+++..|+|.|
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~--------~~gsL~I~~v~~~D~G~Y 76 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL--------ANGDLKIKNLTRDDSGTY 76 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC--------TTSCEEESSCCGGGCEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEEC--------CCCcEEEcccccccCEEE
Confidence 356788999999995433 5567899999865332 112233221 123499999999999999
Q ss_pred EEEEecCCCce
Q psy4613 79 KCIAKNSLGEV 89 (96)
Q Consensus 79 ~c~~~~~~g~~ 89 (96)
.|.+.+..|..
T Consensus 77 ~C~~~n~~g~~ 87 (176)
T 1hng_A 77 NVTVYSTNGTR 87 (176)
T ss_dssp EEEEEETTCCE
T ss_pred EEEEEeCCCCE
Confidence 99999988875
No 287
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}
Probab=99.14 E-value=9.7e-10 Score=52.52 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=54.0
Q ss_pred EecCceeeecCCCcEEEEEEeeecc-cceeEEeeccc----eeE-ec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQG----DMV-IS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~----~~~-~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
...+..+.+..|++++|.|.+.+.. ...+.|++... ..+ .. ..++.+.... ......|.|.+
T Consensus 5 ~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~sL~I~~ 81 (129)
T 3rrq_A 5 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLP---NGRDFHMSVVR 81 (129)
T ss_dssp EEECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECT---TSSEEEEEESS
T ss_pred EECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcC---CCCEEEEEECC
Confidence 3456678899999999999987754 45789987421 111 11 1233222111 11246899999
Q ss_pred CCCCCCeeEEEEEecCCCc
Q psy4613 70 ITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g~ 88 (96)
++..|+|.|.|.+.+..+.
T Consensus 82 ~~~~Dsg~Y~C~~~~~~~~ 100 (129)
T 3rrq_A 82 ARRNDSGTYLCGAISLAPK 100 (129)
T ss_dssp CCGGGCEEEEEEEEECGGG
T ss_pred CChhHCEEEEEEEEecCCC
Confidence 9999999999999886553
No 288
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=99.13 E-value=2.6e-09 Score=49.56 Aligned_cols=75 Identities=20% Similarity=0.430 Sum_probs=50.6
Q ss_pred ceeeecCCCcEEEEEEeeecc-cceeEEeeccce-----eEe-------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGD-----MVI-------SSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~-----~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
..+.+..|++++|.|.+.... ...+.|++.... +.. ...++.+..... .....|.|.+++..|+
T Consensus 4 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~~~~~~Ds 80 (110)
T 2q87_A 4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPA---NLSFTVTLENLTEEDA 80 (110)
T ss_dssp EEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGG---GTEEEEEESSCCGGGC
T ss_pred cEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCc---CCEEEEEEccCCHHHC
Confidence 456788999999999987644 358999986321 111 112333321110 1246799999999999
Q ss_pred eeEEEEEecCC
Q psy4613 76 GSYKCIAKNSL 86 (96)
Q Consensus 76 g~y~c~~~~~~ 86 (96)
|.|.|.+.+..
T Consensus 81 G~Y~C~~~~~~ 91 (110)
T 2q87_A 81 GTYWCGVDTPW 91 (110)
T ss_dssp EEEEEEEECTT
T ss_pred EEEEEEEecCc
Confidence 99999999875
No 289
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*
Probab=99.13 E-value=6.3e-10 Score=51.33 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=50.9
Q ss_pred eeeecCCCcEEEEEEeeecccc---eeEEeeccce-------eEec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKS---INYWVRDQGD-------MVIS---------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
.+.+..|+++.|.|.+.+.+.+ .+.|++.... +... ..++.+.... ......|.|.++
T Consensus 3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~---~~~~~sL~I~~v 79 (109)
T 2oyp_A 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL---NKGDVSLIIKNV 79 (109)
T ss_dssp EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCG---GGTBCCEEECSC
T ss_pred CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCc---cCCcEeEEEccC
Confidence 4567899999999998765432 4899986421 1111 1122111100 001257999999
Q ss_pred CCCCCeeEEEEEecCCCceEEEE
Q psy4613 71 TKYDLGSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g~~~~~~ 93 (96)
+..|+|.|.|.+.+..+.....+
T Consensus 80 ~~~D~G~Y~C~v~~~~~~~~~~~ 102 (109)
T 2oyp_A 80 TLDDHGTYCCRIQFPGLMNDKKL 102 (109)
T ss_dssp CGGGCEEEEEEECCSSTTCCEEE
T ss_pred CChhCeEEEEEEEcCCcccceEE
Confidence 99999999999998765443333
No 290
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.13 E-value=1.1e-11 Score=62.94 Aligned_cols=73 Identities=25% Similarity=0.405 Sum_probs=54.1
Q ss_pred eeecCCCcEEEEEEe-eecccceeEEeeccceeEeccc--------ceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 11 VGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSE--------RYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
..+..|..+.|.|.+ .+.|.+.+.|++++..+..... ++... .....|.|.++...|.|.|.|.
T Consensus 117 ~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~ 189 (209)
T 1nbq_A 117 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN-------PTTGELVFDPLSASDTGEYSCE 189 (209)
T ss_dssp SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCC-------TTTCCEEESSCCGGGCCCEEEE
T ss_pred cceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEc-------CCcceEEEEeccccCCeEEEEE
Confidence 346789999999996 8889999999998765432111 11000 0125789999999999999999
Q ss_pred EecCCCceE
Q psy4613 82 AKNSLGEVE 90 (96)
Q Consensus 82 ~~~~~g~~~ 90 (96)
+.|..|...
T Consensus 190 a~n~~g~~~ 198 (209)
T 1nbq_A 190 ARNGYGTPM 198 (209)
T ss_dssp EECSSSCCE
T ss_pred EeCCcCccc
Confidence 999988763
No 291
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.13 E-value=9.4e-11 Score=64.48 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=56.8
Q ss_pred CCeEEecC-ceeeecCCCcEEEEEEeeecccceeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCCCC----
Q psy4613 1 HPVIHVPN-QLVGAPIDTDVTLECYVEAYPKSINYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD---- 74 (96)
Q Consensus 1 ~p~~~~~~-~~~~~~~g~~~~l~c~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d---- 74 (96)
+|.+...+ ..+.+..|..+.|.|.+.+.|.+.+.|++ ++..+. ......... ....|.|.+++..|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~-~~~~~~~~~-------~~~~L~i~~~~~~d~~~~ 74 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG-DVPGLRQIS-------SDGKLVFPPFRAEDYRQE 74 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCC-CBTTTBEEC-------STTEEEECCCCGGGCCHH
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccc-cCCCceEEc-------CCceEEecccChhhcccc
Confidence 35565544 44667889999999999999999999999 443332 222211111 12468899999887
Q ss_pred --CeeEEEEEecCCCc
Q psy4613 75 --LGSYKCIAKNSLGE 88 (96)
Q Consensus 75 --~g~y~c~~~~~~g~ 88 (96)
.|.|.|.+.|..|.
T Consensus 75 ~d~G~Y~C~a~n~~g~ 90 (388)
T 2v5m_A 75 VHAQVYACLARNQFGS 90 (388)
T ss_dssp HHEEEEEEEEEETTEE
T ss_pred ccCceEEEEEEccCCe
Confidence 99999999998775
No 292
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.1e-10 Score=55.20 Aligned_cols=84 Identities=21% Similarity=0.386 Sum_probs=54.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce---eEecc-----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD---MVISS-----ERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
.+..++..+.+..|++++|.|.+.+. +.+.+.|++.... ++... .++...............|.|.+++..
T Consensus 10 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 89 (136)
T 2d9c_A 10 QVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA 89 (136)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTT
T ss_pred EEEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHH
Confidence 34556677889999999999998765 4568999987521 11111 011100000000011457999999999
Q ss_pred CCeeEEEEEecCC
Q psy4613 74 DLGSYKCIAKNSL 86 (96)
Q Consensus 74 d~g~y~c~~~~~~ 86 (96)
|+|.|.|.+.+..
T Consensus 90 DsG~Y~C~~~~~~ 102 (136)
T 2d9c_A 90 DAGTYYCVKFRKG 102 (136)
T ss_dssp TCEEEEEEEEECC
T ss_pred HCEEEEEEEEeCC
Confidence 9999999988643
No 293
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.13 E-value=2.4e-09 Score=55.90 Aligned_cols=82 Identities=23% Similarity=0.449 Sum_probs=56.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeec--ccceeEEeecc--ce--eEe--------------cccceEEEEeccccce
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ--GD--MVI--------------SSERYEVESISRSIFD 60 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~--~~~--------------~~~~~~~~~~~~~~~~ 60 (96)
++.+...+..+.+..|+.+.|.|.+.+. +.+.+.|++.. .. ... ...++.+.... . .
T Consensus 1 ~~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~-~ 77 (242)
T 1hxm_B 1 AGHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP--E-T 77 (242)
T ss_dssp CCEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET--T-T
T ss_pred CCccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecC--C-C
Confidence 4566777788889999999999999875 56789999853 11 111 11233322110 0 0
Q ss_pred EEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 61 FKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 61 ~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
....|.|.+++..|.|.|.|.+.+.
T Consensus 78 ~~~~L~I~~v~~~D~G~Y~C~~~~~ 102 (242)
T 1hxm_B 78 STSTLTIHNVEKQDIATYYCALWEA 102 (242)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred cEEEEEECCCCcccCEEEEEeeecC
Confidence 2467999999999999999999875
No 294
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.13 E-value=9.9e-10 Score=58.82 Aligned_cols=76 Identities=17% Similarity=0.287 Sum_probs=52.4
Q ss_pred EecCceeeecCCCcEEEEEEeeecccc------eeEEeecc--c--eeEec---------ccceEEEEeccccceEEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKS------INYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~------~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~l 65 (96)
...+..+.+..|+.+.|.|.+.+.+.+ .+.|+++. . ..+.. ..++..... .....|
T Consensus 163 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~L 237 (291)
T 2gki_A 163 SQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS-----GTDFTL 237 (291)
T ss_dssp ECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-----TTEEEE
T ss_pred EcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEec-----CCEEEE
Confidence 334455678899999999999887765 89999863 1 11111 123332210 023579
Q ss_pred EEccCCCCCCeeEEEEEecC
Q psy4613 66 TIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.+++..|+|.|.|.+.+.
T Consensus 238 ~I~~v~~~DsG~Y~C~a~~~ 257 (291)
T 2gki_A 238 TISSVQAEDLAVYYCKQSYY 257 (291)
T ss_dssp EESSCCGGGCEEEEEEEEET
T ss_pred EECCCCHHHCEEEEEEEccC
Confidence 99999999999999999884
No 295
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=99.12 E-value=3.4e-10 Score=53.32 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=53.4
Q ss_pred eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce---eEec-c----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD---MVIS-S----ERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~---~~~~-~----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
.+..++..+.+..|++++|.|.+.+. +.+.+.|++.... ++.. . .++...............|.|.+++..
T Consensus 9 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 88 (120)
T 2yz1_A 9 KVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPE 88 (120)
T ss_dssp CEECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGG
T ss_pred EEECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHH
Confidence 34556677889999999999998764 4568999987421 1111 0 011100000000011246999999999
Q ss_pred CCeeEEEEEecCC
Q psy4613 74 DLGSYKCIAKNSL 86 (96)
Q Consensus 74 d~g~y~c~~~~~~ 86 (96)
|+|.|.|.+.+..
T Consensus 89 DsG~Y~C~~~~~~ 101 (120)
T 2yz1_A 89 DAGTYYCVKFQKG 101 (120)
T ss_dssp GCEEEEEEEEECC
T ss_pred HCEEEEEEEEcCC
Confidence 9999999988753
No 296
>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Probab=99.12 E-value=7.9e-10 Score=52.91 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=52.1
Q ss_pred EEecCceeeecCCCcEEEEEEeee---cccceeEEeecccee----Eec-------------ccceEEEEecc--ccce-
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEA---YPKSINYWVRDQGDM----VIS-------------SERYEVESISR--SIFD- 60 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~~~~----~~~-------------~~~~~~~~~~~--~~~~- 60 (96)
+..++..+.+..|+++.|.|.+.. .+.+.+.|++..... +.. ........... ....
T Consensus 7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~ 86 (135)
T 1xt5_A 7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 86 (135)
T ss_dssp EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence 445667788999999999999764 466789999864321 110 00000000000 0000
Q ss_pred ---EEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 61 ---FKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 61 ---~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
....|.|.+++..|+|.|.|.+.+..
T Consensus 87 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~ 115 (135)
T 1xt5_A 87 ANLAAPTLRLTHVHPQDGGRYWCQVAQWS 115 (135)
T ss_dssp SCTTSCCEEECSCCGGGCEEEEEEEECSS
T ss_pred ecCCCCeEEECCCChhhCcEEEEEEEcCC
Confidence 12469999999999999999999853
No 297
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.12 E-value=1.4e-09 Score=56.02 Aligned_cols=82 Identities=13% Similarity=0.207 Sum_probs=52.6
Q ss_pred EEecCceeeecCCCcE-EEEEEe-eecccceeEEeeccceeEecc---cceEEEEe----ccccceEEEEEEEccCCCCC
Q psy4613 4 IHVPNQLVGAPIDTDV-TLECYV-EAYPKSINYWVRDQGDMVISS---ERYEVESI----SRSIFDFKMRLTIKKITKYD 74 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~-~l~c~~-~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~l~i~~~~~~d 74 (96)
+...+....+..|..+ .|.|.+ .+.|.+.+.|++++..+.... .+..+... ....+...+.|.+......|
T Consensus 121 ~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd 200 (231)
T 2pet_A 121 VSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDR 200 (231)
T ss_dssp EEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGG
T ss_pred EecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhC
Confidence 3333444445678877 999999 888999999999876554222 23332221 11122223667777556666
Q ss_pred CeeEEEEEecC
Q psy4613 75 LGSYKCIAKNS 85 (96)
Q Consensus 75 ~g~y~c~~~~~ 85 (96)
.|.|.|.+.|.
T Consensus 201 ~g~Y~C~a~n~ 211 (231)
T 2pet_A 201 DASFHCAAHYS 211 (231)
T ss_dssp GCEEEEEEEEE
T ss_pred CceEEEEEEcC
Confidence 99999999984
No 298
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.12 E-value=4.6e-10 Score=57.27 Aligned_cols=75 Identities=20% Similarity=0.436 Sum_probs=53.1
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ceeE--e---------cccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDMV--I---------SSERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~~--~---------~~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+.. +..+.+..|+.+.|.|.+.+.+.+.+.|++.. ..+. . ...++...... ....|.|.++
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v 76 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-----TTATLTISGA 76 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-----TEEEEEETTC
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeC-----CEEEEEECcC
Confidence 344 56778899999999999888777889998753 2111 0 02333332210 2357999999
Q ss_pred CCCCCeeEEEEEec
Q psy4613 71 TKYDLGSYKCIAKN 84 (96)
Q Consensus 71 ~~~d~g~y~c~~~~ 84 (96)
+..|.|.|.|.+.+
T Consensus 77 ~~~D~G~Y~C~~~n 90 (212)
T 1nfd_E 77 QPEDEAAYYCLSSY 90 (212)
T ss_dssp CGGGCSEEEEEEEE
T ss_pred CcccCEEEEEEEEc
Confidence 99999999999986
No 299
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.12 E-value=1e-10 Score=59.69 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=48.0
Q ss_pred ecCCCcEEEEEEeee-cccceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 13 APIDTDVTLECYVEA-YPKSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
+..|+.+.|.|.+.+ .|.+.+.|++++..+.... ............+...+.|.|..+...|.|.|.|.+.
T Consensus 126 ~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 126 LVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp HHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred hccCCcEeEEEEEecccCCcEEEEEeCCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 446899999999988 7888999999865542110 0000000011122244779999999999999999998
No 300
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.12 E-value=1.7e-10 Score=59.10 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=48.1
Q ss_pred CCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEE--EEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEV--ESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.|..+.|.|.+.+ .|.+ .+.|++++..+. ....... .......+...+.|.|......|.|.|.|.+.|....
T Consensus 128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 128 KSGTASVVCLLNNFYPREAKVQWKVDNALQS-GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp HTTEEEEEEEEEEEBSSCCEEEEEETTEECC-SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred cCCcEEEEEEEEeEcCCceEEEEEECCeecC-CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 4889999999988 4454 899999865542 1100000 0011112224567889998899999999999997643
No 301
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.12 E-value=4.9e-12 Score=64.62 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=49.8
Q ss_pred cCCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 14 PIDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
..|..+.|.|.+.+. |. +.+.|++++..+............. +.+...+.|.|..+...|.|.|.|.+.|..+..
T Consensus 126 ~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (212)
T 1nfd_E 126 LRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG-QNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV 202 (212)
T ss_dssp HHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSS-SCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred ccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecC-CCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence 458899999999886 44 6899999875543111100000000 112234668899999999999999999987653
No 302
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.12 E-value=1.3e-09 Score=57.62 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=55.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc-----cceeEEeecc--c--eeEec---------ccceEEEEeccccceEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP-----KSINYWVRDQ--G--DMVIS---------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~-----~~~~~w~~~~--~--~~~~~---------~~~~~~~~~~~~~~~~~~~ 64 (96)
.+...+..+.+..|+.+.|.|.+.+.+ .+.+.|++.. . ..+.. ..++..... .....
T Consensus 17 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-----~~~~~ 91 (268)
T 1x9q_A 17 VMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGS-----GTDFT 91 (268)
T ss_dssp CEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-----TTEEE
T ss_pred eEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcC-----CCEEE
Confidence 345556677789999999999988766 4789999753 1 11110 123333210 02357
Q ss_pred EEEccCCCCCCeeEEEEEecCCC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
|.|.+++..|.|.|.|.+.+..+
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~ 114 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVP 114 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSS
T ss_pred EEECCCChhHCEEEEEEEecCCC
Confidence 99999999999999999988643
No 303
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.12 E-value=2.6e-09 Score=55.64 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=53.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eE----------ecc---cceEEEEeccccceEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MV----------ISS---ERYEVESISRSIFDFKMR 64 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~----------~~~---~~~~~~~~~~~~~~~~~~ 64 (96)
+.+..++..+.+..|+.+.|.| ..+.+.+.+.|++.. .. .. ... .++.+.... .....
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~s 77 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPD----GSYFT 77 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCT----TSCEE
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEecc----CceEE
Confidence 3455667778899999999999 556678899998821 11 00 000 333322210 12357
Q ss_pred EEEccCCCCCCeeEEEEEec
Q psy4613 65 LTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~ 84 (96)
|.|.+++..|.|.|.|.+.+
T Consensus 78 L~I~~v~~~D~G~Y~C~~~~ 97 (245)
T 4ei6_B 78 LKIQPTALEDSAVYFCASSF 97 (245)
T ss_dssp EEECSCCGGGCEEEEEEEEC
T ss_pred EEECCCCHhHCEEEEEEEcc
Confidence 99999999999999999985
No 304
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.12 E-value=8.5e-10 Score=56.68 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=53.0
Q ss_pred ecCCCcEEEEEEeeec-ccc-eeEEeeccceeE-ecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMV-ISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
+..|..+.|.|.+.+. |.| .+.|++++.... ....... . . ..+...+.|.|......| |.|.|.+.|..|..
T Consensus 137 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~-~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 211 (220)
T 1pz5_B 137 DTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVL--Q-S-GFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV 211 (220)
T ss_dssp CSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE--E-T-TEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred cCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcc--c-C-CeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence 4578999999999987 888 999998764310 0001000 0 0 112234678888887766 99999999999887
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
...+.+
T Consensus 212 ~~~~~~ 217 (220)
T 1pz5_B 212 DLIKEI 217 (220)
T ss_dssp EEEEEC
T ss_pred eeeecC
Confidence 776654
No 305
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=99.11 E-value=4.2e-10 Score=52.18 Aligned_cols=75 Identities=16% Similarity=0.289 Sum_probs=49.7
Q ss_pred eeeecCCCcEEEEEEeeecccc-----eeEEeeccceeE--ecc-------------cceEEEEeccccceEEEEEEEcc
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKS-----INYWVRDQGDMV--ISS-------------ERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~-----~~~w~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+.+..|+++.|.|.+.+.+.+ .+.|++.+.... ... .+..+.. ....|.|.+
T Consensus 3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-------~~~sL~I~~ 75 (110)
T 1ncn_A 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS-------DSWTLRLHN 75 (110)
T ss_dssp EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET-------TTTEEEECS
T ss_pred EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEEC-------CCEEEEEcC
Confidence 3567899999999998754432 489998753211 100 1111110 125799999
Q ss_pred CCCCCCeeEEEEEecCCCceEE
Q psy4613 70 ITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
++..|+|.|.|.+.+..+....
T Consensus 76 v~~~D~G~Y~C~v~~~~~~~~~ 97 (110)
T 1ncn_A 76 LQIKDKGLYQCIIHHKKPTGMI 97 (110)
T ss_dssp CCGGGCEEEEEEEEEECSSSEE
T ss_pred CChHHCEEEEEEEEcCCCCceE
Confidence 9999999999999987665443
No 306
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.11 E-value=5.7e-10 Score=56.19 Aligned_cols=64 Identities=13% Similarity=0.282 Sum_probs=47.1
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+..|+.+.|.|.+.+ +.+.+.|++++..+... .... .....|.|.+++..|.|.|.|.+.+.
T Consensus 108 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~---~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~ 171 (188)
T 1oll_A 108 PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ---RGYG-------KVQAEFPLGPVTTAHRGTYRCFGSYN 171 (188)
T ss_dssp SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE---EEEC-------SSEEEEEEEECCGGGCEEEEEECEEE
T ss_pred CccccCCEEEEEEEcCC-CCCEEEEEECCcccccc---ccCC-------CceeEEEECCCCcCCCcEEEEEEEcC
Confidence 34678999999999766 45688999986554321 1100 13477999999999999999998764
No 307
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.11 E-value=3.2e-09 Score=54.70 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=52.0
Q ss_pred ecCCCcEEEEEEeeec-cc--ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 13 APIDTDVTLECYVEAY-PK--SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
+..|..+.|.|.+.+. |. +.+.|++++..+........ ......+...+.|.|......|.|.|.|.+.+..+..
T Consensus 134 ~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~--~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~ 211 (220)
T 2fbj_H 134 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPA--LASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV 211 (220)
T ss_dssp SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCE--ECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred ccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCce--ECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence 4578999999999886 65 68999988654321101100 0111223244578888888889999999999998876
Q ss_pred EE
Q psy4613 90 ES 91 (96)
Q Consensus 90 ~~ 91 (96)
..
T Consensus 212 ~~ 213 (220)
T 2fbj_H 212 QE 213 (220)
T ss_dssp EE
T ss_pred Ec
Confidence 53
No 308
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.11 E-value=1.2e-10 Score=61.01 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=48.1
Q ss_pred CCCcEEEEEEeeeccc--ceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEAYPK--SINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.|..+.|.|.+.+.++ +.+.|++++..+... .............+.....|.|..+...|.|.|.|.+.|....
T Consensus 168 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 244 (254)
T 2c1o_A 168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 244 (254)
T ss_dssp HTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred cCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence 4779999999988443 358999987654311 0000000001112224578999999999999999999997654
No 309
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=99.11 E-value=1e-09 Score=51.21 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=50.7
Q ss_pred cCceeeecCCCcEEEEEEeee-cccceeEEeeccce------eE-ec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 7 PNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGD------MV-IS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~------~~-~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
++..+.+..|+++.|.|.+.. .....+.|++.... .. .. ..++.+.. ........|.|.+
T Consensus 3 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~ 79 (116)
T 2or8_A 3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKG---HISEGDVSLTIEN 79 (116)
T ss_dssp CCEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCS---CGGGTBCCEEESS
T ss_pred CcceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEec---CCCCCeEEEEECC
Confidence 445677899999999999865 34557899987411 11 11 11221100 0001235699999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|+|.|.|.+.+..+
T Consensus 80 v~~~DsG~Y~C~v~~~~~ 97 (116)
T 2or8_A 80 SVESDSGLYCCRVEIPGW 97 (116)
T ss_dssp CCGGGCEEEEEEECCSST
T ss_pred CCcccCEEEEEEEEcCCc
Confidence 999999999999987643
No 310
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.11 E-value=9e-11 Score=59.21 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=55.4
Q ss_pred cCceeeecCCCcEEEEEE-eeeccc-ceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 7 PNQLVGAPIDTDVTLECY-VEAYPK-SINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~-~~~~~~-~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
++..+.+..|+.+.|.|. +.+.|. +.+.|++++..+... ..+..... ....|.|.+++..|.|.|.|.+.
T Consensus 14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~ 86 (201)
T 3s97_C 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ-------TNGNLYIANVEASDKGNYSCFVS 86 (201)
T ss_dssp CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECT-------TTCCEEESSCCGGGCEEEEEEEE
T ss_pred CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEc-------CCCeEEECcCCcccCeEEEEEEE
Confidence 345677899999999999 888888 899999987655321 11211111 12468999999999999999999
Q ss_pred cCCCce
Q psy4613 84 NSLGEV 89 (96)
Q Consensus 84 ~~~g~~ 89 (96)
+..+..
T Consensus 87 ~~~~~~ 92 (201)
T 3s97_C 87 SPSITK 92 (201)
T ss_dssp EGGGTE
T ss_pred ecCCCc
Confidence 865443
No 311
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.10 E-value=3.8e-10 Score=58.22 Aligned_cols=65 Identities=9% Similarity=0.127 Sum_probs=48.3
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+..|+.++|.|...+.+.+.+.|++++..+.. ...... ....|.|.+++..|.|.|.|.+.+.
T Consensus 115 ~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~---~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~n~ 179 (218)
T 1uct_A 115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP---QHQSGE-------HPANFSLGPVDLNVSGIYRCYGWYN 179 (218)
T ss_dssp SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC---SEEECS-------SSEEEECCSCCGGGCEEEEEEEECT
T ss_pred CccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc---cccCCC-------ccCEEEEccCCcccCEEEEEEEEcC
Confidence 3568899999999766667788999998754421 111000 2367999999999999999999875
No 312
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.10 E-value=1.8e-10 Score=57.60 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=47.5
Q ss_pred CCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 16 g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
+..+.|.|.+.+.|.|.+.|++++..+.. ..+ +.+..+...|.|.|.|.+.|..|.......|
T Consensus 110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~-~~~----------------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l 172 (176)
T 1hng_A 110 CSNATLTCEVLEGTDVELKLYQGKEHLRS-LRQ----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172 (176)
T ss_dssp TTTTEEEEECSSCSSCEEEEEETTEEEEE-ESS----------------SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred CCcEEEEEEecCCCCcEEEEEECCEECCC-CCc----------------EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence 45689999999999999999998655432 111 2233566899999999999999987766544
No 313
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.10 E-value=1.5e-09 Score=56.32 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=53.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee------------cccceEEEEeccccceEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI------------SSERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~------------~~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+...+..+.+..|+.+.|.|. .+.+.+.+.|+++. ... .. ...++.+... . .....|.
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~ 76 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP--S--QENFSLI 76 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECC--S--SSBCEEE
T ss_pred cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEcc--C--CceEEEE
Confidence 3455667788999999999999 77788899999852 111 00 0123322210 0 0134799
Q ss_pred EccCCCCCCeeEEEEEecCCC
Q psy4613 67 IKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~~g 87 (96)
|.+++..|+|.|.|.+.+..|
T Consensus 77 I~~v~~~DsG~Y~C~~~~~~g 97 (238)
T 2p1y_A 77 LELATPSQTSVYFCASGDLGQ 97 (238)
T ss_dssp ESSCCGGGCEEEEEEEEC---
T ss_pred EecCCcccCeeEEEEEEeCCC
Confidence 999999999999999998754
No 314
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.10 E-value=7e-10 Score=57.72 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=55.5
Q ss_pred EEecCceeeecCCCcEEEEEEeee---cccceeEEeecccee----Eeccc-------------ceEEEEecc-c-cce-
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEA---YPKSINYWVRDQGDM----VISSE-------------RYEVESISR-S-IFD- 60 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~---~~~~~~~w~~~~~~~----~~~~~-------------~~~~~~~~~-~-~~~- 60 (96)
+..++..+.+..|+.+.|.|.+.+ .+.+.+.|++++... ..... ......... . ...
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 445667788999999999999987 778899999875321 00000 000000000 0 000
Q ss_pred ---EEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 61 ---FKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 61 ---~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....|.|.+++..|.|.|.|.+.+..+.
T Consensus 85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~ 115 (250)
T 2fbo_J 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR 115 (250)
T ss_dssp SCTTSCCEEECSCCGGGCEEEEEEEECTTCC
T ss_pred ccCCcceEEEeeCChhhCeEEEEEeccCccC
Confidence 0136999999999999999999987664
No 315
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.10 E-value=5.5e-10 Score=55.60 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=48.4
Q ss_pred eeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 11 VGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+..|+.+.|.|.+. +.+.+.+.|++++..+.... ....|.|.++...|.|.|.|.+.|..+
T Consensus 95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 158 (176)
T 1f2q_A 95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------------ENHNISITNATVEDSGTYYCTGKVWQL 158 (176)
T ss_dssp SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------------CSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred ceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------------CCCeEEECCCCcccCEEEEEEEEeCCc
Confidence 4567899999999984 56667999999865442110 125789999999999999999998644
No 316
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.10 E-value=1.6e-10 Score=59.73 Aligned_cols=79 Identities=18% Similarity=0.379 Sum_probs=42.5
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Eec---------ccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VIS---------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+..++..+.+..|+.+.|.|.+.+.+.+.+.|++... .. ... ..++.... ......|.|.++
T Consensus 26 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v 100 (233)
T 3bqu_C 26 VTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-----YGTDFVFTIENM 100 (233)
T ss_dssp EEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-----EEEEEEEC----
T ss_pred EEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-----cCCEEEEEECCC
Confidence 4444566678899999999999888778899987531 11 100 11211110 112357999999
Q ss_pred CCCCCeeEEEEEecCCC
Q psy4613 71 TKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g 87 (96)
+..|.|.|.|.+.+..+
T Consensus 101 ~~~D~G~Y~C~~~~~~~ 117 (233)
T 3bqu_C 101 LSEDVADYYCLQSDNLP 117 (233)
T ss_dssp -CCCCSEEEEEECSSSS
T ss_pred CHHHCEEEEEEEecCCc
Confidence 99999999999987654
No 317
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.10 E-value=2.6e-11 Score=61.44 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=53.8
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+. ..+..|+.+.|.|.+.+.+. .+.|++++..+......... ......|.|.+++..|.|.|.|
T Consensus 5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C 75 (198)
T 1ugn_A 5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQE-------LVKKGQFPIPSITWEHTGRYRC 75 (198)
T ss_dssp CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHH-------HHTTTEEEESSCCGGGCEEEEE
T ss_pred CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccccc-------CCcccEEEECCCCHHHCeEEEE
Confidence 466665555 36889999999999988665 68999986544211000000 0012568999999999999999
Q ss_pred EEecCC
Q psy4613 81 IAKNSL 86 (96)
Q Consensus 81 ~~~~~~ 86 (96)
.+.|..
T Consensus 76 ~a~n~~ 81 (198)
T 1ugn_A 76 YYGSDT 81 (198)
T ss_dssp EEEETT
T ss_pred EEECCC
Confidence 998865
No 318
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.10 E-value=3.6e-10 Score=61.11 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=58.2
Q ss_pred eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeecccee---Eec-c----cceEEEEeccccceEEEEEEEccCCCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDM---VIS-S----ERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~~---~~~-~----~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
.+..++..+.+..|+.+.|.|.+.+. |.+.+.|++++... ... . .++...............|.|.+++..
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 45566778889999999999999887 77899999975431 111 0 122211100000012356999999999
Q ss_pred CCeeEEEEEecCCCc
Q psy4613 74 DLGSYKCIAKNSLGE 88 (96)
Q Consensus 74 d~g~y~c~~~~~~g~ 88 (96)
|.|.|.|.+.+..+.
T Consensus 85 D~G~Y~C~a~n~~~~ 99 (327)
T 2wng_A 85 DAGTYYCVKFRKGSP 99 (327)
T ss_dssp GCEEEEEEEEESSTT
T ss_pred cCeEEEEEeecCCCc
Confidence 999999999987553
No 319
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.09 E-value=8.4e-10 Score=60.46 Aligned_cols=87 Identities=13% Similarity=0.157 Sum_probs=58.8
Q ss_pred ceeeecCCCcEEEEEEeee-----cccceeEEeeccceeEec-------ccceEEEEecccc-----ceEEEEEEEccCC
Q psy4613 9 QLVGAPIDTDVTLECYVEA-----YPKSINYWVRDQGDMVIS-------SERYEVESISRSI-----FDFKMRLTIKKIT 71 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~-----~~~~~~~w~~~~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~l~i~~~~ 71 (96)
....+..|+.+.|.|.+.+ .|.+.+.|++++..+... ..++.+....... ......|.|.++.
T Consensus 184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 263 (363)
T 1wio_A 184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL 263 (363)
T ss_dssp EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence 3445778999999998877 778899999886554321 2233222110000 0012479999999
Q ss_pred CCCCeeEEEEEecC--CCceEEEEEe
Q psy4613 72 KYDLGSYKCIAKNS--LGEVESSIRL 95 (96)
Q Consensus 72 ~~d~g~y~c~~~~~--~g~~~~~~~l 95 (96)
..|.|.|.|.+.|. .|.....+.|
T Consensus 264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l 289 (363)
T 1wio_A 264 PQYAGSGNLTLALEAKTGKLHQEVNL 289 (363)
T ss_dssp GGGCEEEEEEECBTTTTCCEEEEEEE
T ss_pred cCcCcEEEEEEEEhhhcCeEEEEEeE
Confidence 99999999999999 8876666544
No 320
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.09 E-value=3e-11 Score=65.50 Aligned_cols=90 Identities=22% Similarity=0.425 Sum_probs=60.2
Q ss_pred CeEEecCceeeecCCCcEEEEEEe---eecc-cceeEEeeccceeEe--------cccceEEEEeccccceEEEEEEEcc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYV---EAYP-KSINYWVRDQGDMVI--------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~---~~~~-~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
|.+..++....+..|+.+.|.|.+ .+.| .+.+.|++++..+.. ...++.... .........|.|.+
T Consensus 227 P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~L~i~~ 304 (339)
T 3o4o_C 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE--NNENYIEVPLIFDP 304 (339)
T ss_dssp CEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCC--SSSCEEEECCEECS
T ss_pred CEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecc--cCceEEEEEEEEEE
Confidence 444445555667889999999999 7888 778899887654321 111111110 11111234799999
Q ss_pred CCCCCC-eeEEEEEecCCCceEEEE
Q psy4613 70 ITKYDL-GSYKCIAKNSLGEVESSI 93 (96)
Q Consensus 70 ~~~~d~-g~y~c~~~~~~g~~~~~~ 93 (96)
+...|. |.|.|.+.|..|.....+
T Consensus 305 v~~~d~~G~Y~C~a~N~~G~~~~~~ 329 (339)
T 3o4o_C 305 VTREDLHMDFKCVVHNTLSFQTLRT 329 (339)
T ss_dssp SCCCSCCCCCEEEEEETTEEECCBC
T ss_pred echhhcCccEEEEEEeccCceEEEE
Confidence 999997 999999999999765544
No 321
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=99.09 E-value=2.2e-09 Score=50.02 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=52.4
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+...+..+.+..|++++|.|.+.+...+.+.|++... ..+. . ..++...... ......|.|.++
T Consensus 3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~~ 79 (112)
T 2z35_A 3 VTQTGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNK---EATSFHLQKASV 79 (112)
T ss_dssp EECSCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBT---TTTBCCEEESSC
T ss_pred eEeCCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcC---CCCEEEEEECCC
Confidence 4456677889999999999998876677899997531 1111 0 1222221100 011346999999
Q ss_pred CCCCCeeEEEEEe
Q psy4613 71 TKYDLGSYKCIAK 83 (96)
Q Consensus 71 ~~~d~g~y~c~~~ 83 (96)
+..|+|.|.|.+.
T Consensus 80 ~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 80 QESDSAVYYCALS 92 (112)
T ss_dssp CSTTCSEEEEEEE
T ss_pred ChhhCEEEEEEEE
Confidence 9999999999998
No 322
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.09 E-value=3.5e-10 Score=56.80 Aligned_cols=66 Identities=17% Similarity=0.197 Sum_probs=47.8
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+..|+.+.|.|.+.+. .+.+.|++++..+.. ..... .....|.|.+++..|.|.|.|.+.|..+
T Consensus 103 ~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~-~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 103 PAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPY-KNPER---------WYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp CSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTS-CCCCE---------EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred ceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcc-eecCC---------CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 346689999999997664 468899998654421 11111 1346788999999999999999999654
No 323
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.09 E-value=4.2e-10 Score=55.57 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=52.9
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
|.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++..+... . ..+.+.++...|.|.|.|
T Consensus 5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-~---------------~~~~~~~~~~~d~G~Y~C 68 (170)
T 3ry4_A 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-T---------------QPSYRFKANNNDSGEYTC 68 (170)
T ss_dssp CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-C---------------SSEEEEECCGGGCEEEEE
T ss_pred CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-c---------------cceEEEecccccCeEEEE
Confidence 5566666666788999999999998876 5689999986544211 1 224456789999999999
Q ss_pred EEecCCCce
Q psy4613 81 IAKNSLGEV 89 (96)
Q Consensus 81 ~~~~~~g~~ 89 (96)
.+.+.....
T Consensus 69 ~~~~~~~s~ 77 (170)
T 3ry4_A 69 QTGQTSLSD 77 (170)
T ss_dssp EETTSBCCC
T ss_pred EEeCCCceE
Confidence 998755443
No 324
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.09 E-value=3.1e-10 Score=57.69 Aligned_cols=88 Identities=18% Similarity=0.346 Sum_probs=56.3
Q ss_pred EecCceeeecCCCcEEEEEEeeecc----cceeEEeeccce-------eEe-c------------ccceEEEEeccccce
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQGD-------MVI-S------------SERYEVESISRSIFD 60 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~~~-------~~~-~------------~~~~~~~~~~~~~~~ 60 (96)
..++..+.+..|+.+.|.|.+.+.+ .+.+.|++.+.. ... . ..+..+.. .....
T Consensus 4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~ 81 (214)
T 3jz7_A 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS--NDVKS 81 (214)
T ss_dssp --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESC--SCGGG
T ss_pred ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEec--cCccC
Confidence 4455677899999999999998866 468999874311 110 0 11111110 00000
Q ss_pred EEEEEEEccCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 61 ~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
....|.|.+++..|.|.|.|.+.+..|.....+.
T Consensus 82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~ 115 (214)
T 3jz7_A 82 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 115 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CcccEEEccCChhhCeEEEEEEEeCCCccccEEE
Confidence 1356999999999999999999998776555443
No 325
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.09 E-value=6.9e-11 Score=59.56 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=47.9
Q ss_pred ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
+..|..+.|.|.+ |.|.+.|++++..+... .. ....|.|.++...|.|.|.|.+.|..|..
T Consensus 119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~-~~------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPL-NA------------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp CSSSCEEEEECSS---SCSCEEEEETTEECCCS-SC------------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred cCCCCeEEEEeeC---CCCeEEEEECCEECccc-CC------------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 3489999999998 78899999987654311 11 12568889999999999999999987755
No 326
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.09 E-value=1e-08 Score=53.73 Aligned_cols=72 Identities=14% Similarity=0.244 Sum_probs=49.5
Q ss_pred eeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE-----e-----------cccceEEEEeccccceEEEEEEEccC
Q psy4613 11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV-----I-----------SSERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
..+..|+.+.|.|.+.+.+ .+.+.|+++. ..+. . ...++.+..... .....|.|.++
T Consensus 144 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~v 220 (256)
T 3ux9_B 144 GLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNS---KNTLYLQMNSL 220 (256)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETT---TTEEEEEECSC
T ss_pred eEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCC---CCEEEEEECCC
Confidence 3478899999999998766 6789999852 1110 0 011333322111 12356999999
Q ss_pred CCCCCeeEEEEEecC
Q psy4613 71 TKYDLGSYKCIAKNS 85 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~ 85 (96)
+..|+|.|.|.+.+.
T Consensus 221 ~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 221 RAEDTAVYYCARYID 235 (256)
T ss_dssp CGGGCEEEEEEEEET
T ss_pred ChhhCEEEEEEEEcC
Confidence 999999999999985
No 327
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.09 E-value=9.3e-10 Score=56.15 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=50.7
Q ss_pred ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+. |.| .+.|++++..+....... ... . ..+...+.|.|......| |.|.|.+.|..|...
T Consensus 130 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~~-~-~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 130 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA-VLQ-S-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEE-T-TEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred cccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCC-ccC-C-CcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 4578999999999986 778 999998765321110000 000 0 112234678888888766 999999999888755
Q ss_pred EE
Q psy4613 91 SS 92 (96)
Q Consensus 91 ~~ 92 (96)
..
T Consensus 206 ~~ 207 (210)
T 3d9a_H 206 VD 207 (210)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 328
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=99.09 E-value=1.6e-08 Score=47.41 Aligned_cols=79 Identities=14% Similarity=0.272 Sum_probs=52.6
Q ss_pred EecCceeeecCCCcEEEEEEeeecc-cceeEEeecc--c--eeEe----------cccceEEEEeccccceEEEEEEEcc
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQ--G--DMVI----------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~--~--~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
...+..+.+..|++++|.|.+.... ...+.|++.. . ..+. ...++...... ......|.|.+
T Consensus 3 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~L~I~~ 79 (117)
T 3bp6_A 3 TFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNILD 79 (117)
T ss_dssp EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEESS
T ss_pred eecCCcEEEeCCCCEEEEeEeecCCCCCEEEEEEeCCCCCceEEEEECCCCccccccCcEEEEEcC---CCCEEEEEECc
Confidence 4456677899999999999987643 4689999752 1 1111 01233322111 11345799999
Q ss_pred CCCCCCeeEEEEEecCC
Q psy4613 70 ITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~ 86 (96)
++.+|+|.|.|.+.+..
T Consensus 80 ~~~~Dsg~Y~C~~~~~~ 96 (117)
T 3bp6_A 80 TRRNDSGIYLCGAISLH 96 (117)
T ss_dssp CCGGGCEEEEEEEEECS
T ss_pred CCHHHCEEEEEEEEecC
Confidence 99999999999988643
No 329
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.08 E-value=3.3e-09 Score=55.67 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=54.8
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeec--ccceeEEeecc--ce--eEe--c------------ccceEEEEeccccceE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ--GD--MVI--S------------SERYEVESISRSIFDF 61 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~--~~--~~~--~------------~~~~~~~~~~~~~~~~ 61 (96)
|....++..+.+..|+.+.|.|.+.+. +.+.+.|++.. .. .+. . ..++.+..... ..
T Consensus 7 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~ 83 (256)
T 3juy_B 7 QVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTS---AN 83 (256)
T ss_dssp CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETT---TT
T ss_pred eEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecC---CC
Confidence 344556677889999999999999873 66789998742 11 110 0 12333321110 12
Q ss_pred EEEEEEccCCCCCCeeEEEEEecC
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
...|.|.+++..|+|.|.|.+.+.
T Consensus 84 ~~~L~I~~v~~~DsG~Y~C~~~~~ 107 (256)
T 3juy_B 84 TAYMELRSLRSADTAVYYCARVGE 107 (256)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCC
T ss_pred EEEEEECCCCcccCEEEEEeEEec
Confidence 357999999999999999999886
No 330
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.08 E-value=1.2e-09 Score=56.05 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=48.9
Q ss_pred ecCCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+ .|.| .+.|++++..+....... .. ....+...+.|.|..... |.|.|.|.+.|..+...
T Consensus 136 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~-~~--~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~ 211 (219)
T 1c1e_H 136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA-VL--QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTK 211 (219)
T ss_dssp SCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EE--SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEE
T ss_pred cccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCC-cc--cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCcc
Confidence 457999999999998 7888 999998865421100000 00 001122345688844443 56999999999877654
Q ss_pred EEE
Q psy4613 91 SSI 93 (96)
Q Consensus 91 ~~~ 93 (96)
...
T Consensus 212 ~~~ 214 (219)
T 1c1e_H 212 VDK 214 (219)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 331
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=99.08 E-value=1.1e-09 Score=50.95 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=51.4
Q ss_pred cCceeeecCCCcEEEEEEee-ecccceeEEeeccc----eeEe--c-------------ccceEEEEeccccceEEEEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQG----DMVI--S-------------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~----~~~~--~-------------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+..+.+..|++++|.|.+. +.+.+.+.|++... ..+. . ..++.... . .....|.
T Consensus 5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~---~--~~~~~L~ 79 (111)
T 2qhl_A 5 ELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV---N--DQKFDLN 79 (111)
T ss_dssp BCEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE---S--SSBEEEE
T ss_pred CCceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEE---c--CCeEEEE
Confidence 45567789999999999987 66677899987531 1111 0 12222221 0 1235799
Q ss_pred EccCCCCCCeeEEEEEecC
Q psy4613 67 IKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~ 85 (96)
|.+++.+|+|.|.|.+.+.
T Consensus 80 I~~~~~~DsG~Y~C~~~~~ 98 (111)
T 2qhl_A 80 IIGTREDDGGEYFCGEVEG 98 (111)
T ss_dssp ESSCCGGGCEEEEEEEEET
T ss_pred ECCCChhHCEEEEEEEccC
Confidence 9999999999999999875
No 332
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.08 E-value=1.9e-09 Score=57.29 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=51.7
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
|.+......+.+..|+.+.|.|.+.+. +.|++++..+. .+. ....... ....|.|.+++..|.|.|.|.
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~---~~~--~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~ 69 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP---QEM--AKAQDGT--FSSVLTLTNLTGLDTGEYFCT 69 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS---EEE--EECTTSC--EEEEEEECSCCGGGCEEEEEE
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc---cce--eccCCCc--eeEEEEEccCChhhCEEEEEE
Confidence 445555566788999999999998764 89999875541 111 1111111 247899999999999999999
Q ss_pred EecCCCc
Q psy4613 82 AKNSLGE 88 (96)
Q Consensus 82 ~~~~~g~ 88 (96)
+.|..|.
T Consensus 70 a~n~~g~ 76 (289)
T 3mjg_X 70 HNDSRGL 76 (289)
T ss_dssp CCC----
T ss_pred EcccCCC
Confidence 9987764
No 333
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.08 E-value=2.1e-09 Score=57.89 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=48.5
Q ss_pred ecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
+..|+.+.|.|.+.+ +.+.+.|++++............. .......|.|.+++..|.|.|.|.+.|..|.
T Consensus 130 v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 199 (316)
T 3vh8_G 130 VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIH-----DGVSKANFSIGPMMLALAGTYRCYGSVTHTP 199 (316)
T ss_dssp EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEE-----TTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeec-----CCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence 678999999999854 566888998865442110000000 0013467999999999999999999987663
No 334
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.08 E-value=1.7e-08 Score=51.09 Aligned_cols=77 Identities=12% Similarity=0.241 Sum_probs=50.0
Q ss_pred cCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEecc-ccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 14 PIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISR-SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 14 ~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
..|..+.|.|.+. +.|.|.+.|++++..+... ......... ..+.... +..+...|.|.|.|.+.|..|....
T Consensus 119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~--~~~~~~~~~~~~~~~~~---~~~v~~~d~g~Y~C~a~n~~~~~s~ 193 (201)
T 1dr9_A 119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAI--NTTVSQDPETELYAVSS---KLDFNMTTNHSFMCLIKYGHLRVNQ 193 (201)
T ss_dssp SSTTEEEEEEEEEEESSCEEEEEEESSCEECCS--EEEEEECTTTCCEEEEE---EEEEETTSCEEEEEEEEETTCCEEE
T ss_pred CCCCeEEEEEecCCccCCCEEEEEECCEECccc--cceEEecCCCcEEEEEE---EEEEEecCCCEEEEEEecCcceeee
Confidence 4578899999995 8899999999986554311 112222111 1111112 2334457899999999999998877
Q ss_pred EEEe
Q psy4613 92 SIRL 95 (96)
Q Consensus 92 ~~~l 95 (96)
.+.+
T Consensus 194 ~~~~ 197 (201)
T 1dr9_A 194 TFNW 197 (201)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6653
No 335
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.08 E-value=2.6e-09 Score=56.79 Aligned_cols=79 Identities=19% Similarity=0.303 Sum_probs=55.5
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe--------------cccceEEEEeccccceEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI--------------SSERYEVESISRSIFDFKMR 64 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~~~ 64 (96)
.+..++..+.+..|+++.|.|.+.+.+.+.+.|++... .... ...++.+.... .....
T Consensus 26 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~s 101 (279)
T 2wbj_D 26 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS----LTLST 101 (279)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECS----SSEEE
T ss_pred eEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCC----CCEEE
Confidence 44556677889999999999999877888999998531 1110 01233322110 12457
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++..|.|.|.|.+.+.
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~ 122 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDL 122 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEET
T ss_pred EEEccCCccCCEEEEEEEccc
Confidence 999999999999999999883
No 336
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.08 E-value=3.5e-11 Score=62.24 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=50.6
Q ss_pred CCCcEEEEEEeeecccc--eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEEE
Q psy4613 15 IDTDVTLECYVEAYPKS--INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~~ 92 (96)
.|+.+.|.|.+.+.+++ .+.|++++..+................+...+.|.|......|.|.|.|.+.|..+.....
T Consensus 149 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 149 QANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 228 (234)
T ss_dssp TTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred cCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence 57899999999885433 8999998655421100000000111122234678888888999999999999987765544
Q ss_pred E
Q psy4613 93 I 93 (96)
Q Consensus 93 ~ 93 (96)
+
T Consensus 229 ~ 229 (234)
T 2j6e_L 229 V 229 (234)
T ss_dssp E
T ss_pred c
Confidence 3
No 337
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.08 E-value=8.6e-10 Score=55.84 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=54.9
Q ss_pred cCceeeecCCCcEEEEEEeee-cccceeEEeeccceeEe--cccc--eEEEE-ec----cccceEEEEEEEccCCCCCCe
Q psy4613 7 PNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVI--SSER--YEVES-IS----RSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~--~~~~--~~~~~-~~----~~~~~~~~~l~i~~~~~~d~g 76 (96)
.+..+.+..|+++.|.|.+.+ .+.+.+.|++++..+.. .... ..... .. +........|.|.+++..|.|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G 83 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence 455677899999999999875 44568999987543221 1000 00000 00 000001256999999999999
Q ss_pred eEEEEEecCCCceEEEE
Q psy4613 77 SYKCIAKNSLGEVESSI 93 (96)
Q Consensus 77 ~y~c~~~~~~g~~~~~~ 93 (96)
.|.|.+.+..+.....+
T Consensus 84 ~Y~C~~~~~~~~~~~~~ 100 (193)
T 2if7_A 84 SYRAQISTKTSAKLSSY 100 (193)
T ss_dssp EEEEEEECSSCEEEEEE
T ss_pred eEEEEEEecCCCeEEEE
Confidence 99999999877544433
No 338
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.07 E-value=2e-10 Score=59.44 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=48.3
Q ss_pred CCCcEEEEEEeeec-c-cceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEAY-P-KSINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~~-~-~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.|+.+.|.|.+.+. | .+.+.|++++..+.... ............+.....|.+......|.|.|.|.+.|....
T Consensus 149 ~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 149 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp HHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred cCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 47889999999884 4 47999999865543110 000000011112224567888888889999999999998653
No 339
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.07 E-value=5.9e-09 Score=54.36 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=53.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee--------------cccceEEEEeccccceEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI--------------SSERYEVESISRSIFDFK 62 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~--------------~~~~~~~~~~~~~~~~~~ 62 (96)
.+..+ ..+.+..|+.+.|.|.+.+.+ .+.+.|++... .. .. ...++.+..... ...
T Consensus 5 ~v~~p-~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~ 80 (247)
T 2ghw_B 5 QLVQS-GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNS---KNT 80 (247)
T ss_dssp EEEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETT---TTE
T ss_pred EEEec-CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCC---CCE
Confidence 34444 347789999999999999876 57899988421 11 10 112333322100 023
Q ss_pred EEEEEccCCCCCCeeEEEEEecC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..|.|.+++..|+|.|.|.+.+.
T Consensus 81 ~~L~I~~v~~~D~G~Y~C~~~n~ 103 (247)
T 2ghw_B 81 LYLQMNSLRAEDTAVYYCARDRS 103 (247)
T ss_dssp EEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEEECcCCHHHCEEEEEeeecc
Confidence 57999999999999999999886
No 340
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.07 E-value=5.3e-11 Score=60.84 Aligned_cols=65 Identities=25% Similarity=0.382 Sum_probs=48.9
Q ss_pred CCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccC-CCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI-TKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~c~~~~~~g~ 88 (96)
.|..+.|.|. +.|.+.+.|++++..+........... ....|.|.++ ...|.|.|.|.+.|..|.
T Consensus 127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~ 192 (204)
T 1sy6_A 127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPE 192 (204)
T ss_dssp ETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred cCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec-------CCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence 7999999999 778889999998765432211111111 1257999999 999999999999999885
No 341
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.07 E-value=2.9e-10 Score=59.83 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=56.5
Q ss_pred CceeeecCCCcEEEEEEe---eecccceeEEeeccceeEec-----------------cc----ceEEEEeccccceEEE
Q psy4613 8 NQLVGAPIDTDVTLECYV---EAYPKSINYWVRDQGDMVIS-----------------SE----RYEVESISRSIFDFKM 63 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~---~~~~~~~~~w~~~~~~~~~~-----------------~~----~~~~~~~~~~~~~~~~ 63 (96)
+....+..|+.+.|.|.+ .+.|.+.+.|++.+...... .. +.... ........
T Consensus 125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~ 201 (268)
T 3mj6_A 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLT---GDISRNDG 201 (268)
T ss_dssp CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEEC---SCGGGTBC
T ss_pred CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEee---ccCCCCeE
Confidence 345678899999999999 45688899999843221100 00 10000 00001235
Q ss_pred EEEEccCCCCCCeeEEEEEecCCCceEEEEEe
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g~~~~~~~l 95 (96)
.|.|.++...|.|.|.|.+.|..|.....+.|
T Consensus 202 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 233 (268)
T 3mj6_A 202 SIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233 (268)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEECcCChhhCeEEEEEEEcCCceEEEEEEE
Confidence 79999999999999999999988876666544
No 342
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.07 E-value=2.9e-09 Score=54.08 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=45.0
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+..|+.++|.|.+.+ +.+.+.|++++..+........... ......|.|.+++ |.|.|.|.+.+.
T Consensus 118 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~-----~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 118 TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN-----GTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET-----TEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred ccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccC-----CceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 5788999999999876 5678899998754432111111000 0024678899988 999999998754
No 343
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=99.07 E-value=1.7e-08 Score=47.21 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=50.4
Q ss_pred EecCceeeecCCCcEEEEEEeeec---ccceeEEeeccc----eeEec-------------ccceEEEEeccccceEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQG----DMVIS-------------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~----~~~~~-------------~~~~~~~~~~~~~~~~~~~ 64 (96)
..++ .+.+..|++++|.|.+... +...+.|++... ..+.. ..++....... .....
T Consensus 3 ~q~~-~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~s 78 (116)
T 3bj9_1 3 HQPP-AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVA---RNRGY 78 (116)
T ss_dssp ECCS-EEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGG---GTEEE
T ss_pred ecCC-cEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCC---CceEE
Confidence 3444 5789999999999998754 456899987531 11110 11222221110 01347
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++..|+|.|.|.+.+.
T Consensus 79 L~I~~~~~~DsG~Y~C~~~~~ 99 (116)
T 3bj9_1 79 LSISELQPEDEAMYYCAMGAR 99 (116)
T ss_dssp EEECSCCGGGCEEEEEEECCS
T ss_pred EEECCCChhHCEEEEEEEeCC
Confidence 999999999999999999865
No 344
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.07 E-value=6.8e-09 Score=55.31 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=52.6
Q ss_pred CceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee--------------cccceEEEEeccccceEEEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI--------------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+..+.+..|+++.|.|.+.+.+ .+.+.|++... .. +. ...++....... .....|.|
T Consensus 33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I 109 (282)
T 1qok_A 33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTS---SNTAYLQL 109 (282)
T ss_dssp CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETT---TTEEEEEE
T ss_pred CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecC---CCeEEEEE
Confidence 3456788999999999998764 57899998531 11 10 012333222100 02367999
Q ss_pred ccCCCCCCeeEEEEEecCCC
Q psy4613 68 KKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g 87 (96)
.+++..|+|.|.|.+.+..|
T Consensus 110 ~~v~~~DsG~Y~C~~~n~~g 129 (282)
T 1qok_A 110 SSLTSEDTAVYYCNEGTPTG 129 (282)
T ss_dssp CSCCGGGCEEEEEEEECSSS
T ss_pred CcCChhhCEEEEEEeccCCC
Confidence 99999999999999998765
No 345
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.07 E-value=9.1e-10 Score=57.70 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=52.5
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+.. .+..|+.++|.|.+.+ +...+.|++++..+....... ........|.|.+++..|.|.|.|
T Consensus 7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~-------~~~~~~~~L~I~~v~~~DsG~Y~C 77 (242)
T 1p6f_A 7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKP-------PERINKVKFYIPDMNSRMAGQYSC 77 (242)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSS-------CTTCCEEEEEECSCCGGGCEEEEE
T ss_pred CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccc-------cCCcceeEEEecCCCcccCeEEEE
Confidence 3666655554 6889999999999865 445788999865443110000 001134679999999999999999
Q ss_pred EEecC
Q psy4613 81 IAKNS 85 (96)
Q Consensus 81 ~~~~~ 85 (96)
.+.+.
T Consensus 78 ~~~~~ 82 (242)
T 1p6f_A 78 IYRVG 82 (242)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 98764
No 346
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.06 E-value=5e-09 Score=54.72 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeec--cceeEe----------------cccceEEEEeccccceEEEEEEEc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRD--QGDMVI----------------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
....+..|+.+.|.|.+.+.+ .+.+.|+++ +..+.. ...++.+..... .....|.|.
T Consensus 139 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~ 215 (250)
T 3esu_F 139 GPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKS---SSTAYMQLS 215 (250)
T ss_dssp CCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGG---GTEEEEEEC
T ss_pred CceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCC---CCeEEEEEC
Confidence 345678999999999998866 678999986 222210 012333322110 123579999
Q ss_pred cCCCCCCeeEEEEEec
Q psy4613 69 KITKYDLGSYKCIAKN 84 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~ 84 (96)
+++..|.|.|.|.+.+
T Consensus 216 ~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 216 SLTSVDSAVYFCARSG 231 (250)
T ss_dssp SCCGGGCEEEEEEEEC
T ss_pred CCCcccCEEEEEEEec
Confidence 9999999999999996
No 347
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=51.85 Aligned_cols=87 Identities=17% Similarity=0.357 Sum_probs=52.8
Q ss_pred cCceeeecCCCcEEEEEEeeeccc---ceeEEeecccee----E-e-c-----------ccceEEEEeccccceEEEEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPK---SINYWVRDQGDM----V-I-S-----------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~----~-~-~-----------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+..+.+..|+++.|.|.+.+.+. ..+.|++..... . . . ..|..+.. ........+|.
T Consensus 6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~ 83 (123)
T 4gjt_B 6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPP--PPRNPLDGSVL 83 (123)
T ss_dssp CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCC--SSCCTTBCCEE
T ss_pred cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEec--CCCcCCEEEEE
Confidence 345677899999999999876443 357898753211 0 0 0 01111100 00000124699
Q ss_pred EccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613 67 IKKITKYDLGSYKCIAKN-SLGEVESSIRL 95 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l 95 (96)
|.+++..|+|.|.|.+.+ +.|.....+.|
T Consensus 84 I~~v~~~DsG~Y~C~v~t~~~g~~~~~~~L 113 (123)
T 4gjt_B 84 LRNAVQADEGEYECRVSTFPAGSFQARLRL 113 (123)
T ss_dssp EESCCSSSCSEEEEEEEESSSCEEEEEEEE
T ss_pred ECCCChHHCEEEEEEEEECCCCeEEeEEEE
Confidence 999999999999998765 56666555544
No 348
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*
Probab=98.64 E-value=1.5e-11 Score=57.22 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=52.3
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
...+..+.+..|++++|.|.+.+.+.+.+.|++... .. +. ...++..... .......|.|.+++
T Consensus 3 ~Q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~ 79 (110)
T 1u3h_A 3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFN---KREKKLSLHIADSQ 79 (110)
Confidence 345566778999999999999877778899998632 11 10 0112221110 01123579999999
Q ss_pred CCCCeeEEEEEecC
Q psy4613 72 KYDLGSYKCIAKNS 85 (96)
Q Consensus 72 ~~d~g~y~c~~~~~ 85 (96)
.+|+|.|.|.+.+.
T Consensus 80 ~~DsG~Y~C~~~~~ 93 (110)
T 1u3h_A 80 PGDSATYFCAASAN 93 (110)
Confidence 99999999998864
No 349
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.06 E-value=1.7e-09 Score=60.65 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=53.3
Q ss_pred CceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
+....+..|+.+.|.|.+.+.+.+ .+.|++++..+.... . .. ......|.|..++..|.|.|.|.+.|
T Consensus 93 ~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~-~------~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n 163 (450)
T 1z7z_I 93 PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP-A------VG--EPAEVTTTVLVRRDHHGANFSCRTEL 163 (450)
T ss_dssp CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-C------CT--TTEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccc-c------cc--cccceEEEEEeeccccCceEEEEEEc
Confidence 344567889999999999998887 899999876553211 0 00 01346899999999999999999998
Q ss_pred CCC
Q psy4613 85 SLG 87 (96)
Q Consensus 85 ~~g 87 (96)
..|
T Consensus 164 ~~g 166 (450)
T 1z7z_I 164 DLR 166 (450)
T ss_dssp ECG
T ss_pred ccC
Confidence 765
No 350
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.06 E-value=7.9e-09 Score=54.35 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=53.6
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--ce--eEe-------------cccceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GD--MVI-------------SSERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~--~~~-------------~~~~~~~~~~~~~~~~~~~~ 64 (96)
+..++ ...+..|+.+.|.|.+.+.+ .+.+.|++.. .. .+. ...++.+..... .....
T Consensus 4 ~~~p~-~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~ 79 (257)
T 1f3r_B 4 LLESG-PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS---KNQVF 79 (257)
T ss_dssp EEEEC-CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETT---TTEEE
T ss_pred EECCC-CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECC---CCEEE
Confidence 44443 34689999999999998874 6789999852 11 110 012333322100 12357
Q ss_pred EEEccCCCCCCeeEEEEEecCCC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
|.|.+++..|+|.|.|.+.+..|
T Consensus 80 L~I~~v~~~DsG~Y~C~a~n~~g 102 (257)
T 1f3r_B 80 LKMNSLQTDDTGTYYCTRDLYGG 102 (257)
T ss_dssp EEEESCCTTCCEEEEEEEESSSS
T ss_pred EEECCCCcccCEEEEEEEccccc
Confidence 99999999999999999998753
No 351
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}
Probab=99.06 E-value=2.4e-11 Score=53.77 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=45.2
Q ss_pred CceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccC-CCCCCeeEEEEEec
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI-TKYDLGSYKCIAKN 84 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~c~~~~ 84 (96)
+....+..|.+++|.|.+.+.|. +.|++++..+. . . ....|.|.++ ...|+|.|.|.+..
T Consensus 6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~-~-~-------------~~~~L~I~~v~~~~DsG~Y~C~A~t 66 (82)
T 3r08_E 6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELP-Q-K-------------HDKHLVLQDFSEVEDSGYYVCYTPA 66 (82)
T ss_dssp CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECT-T-C-------------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECc-C-C-------------CCCEEEECccCccCcCEEEEEEEcc
Confidence 34455678999999999999873 99999875542 1 1 0146889996 77999999998854
No 352
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.06 E-value=2.9e-10 Score=57.25 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=47.5
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEcc-CCCCCCeeEEEEEecCCCce
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKK-ITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~c~~~~~~g~~ 89 (96)
....|+.+.|.|.+.+ +. .+.|++++..+... ....|.|.+ ++..|+|.|.|.+.|..|..
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~---------------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~ 71 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK---------------HDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC---------------CCSEEEEESCCTTTSCEEEEEECSSCCCCC
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC---------------CCCEEEECCCCccccCEEEEEEEEeCCCcE
Confidence 3467999999999887 43 49999987554311 013689999 99999999999999987763
No 353
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.06 E-value=1.3e-10 Score=62.91 Aligned_cols=79 Identities=16% Similarity=0.418 Sum_probs=56.6
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
..+..|..+.|.|.+.+.|.+.+.|++++..+.. ..+....... .....|.|.++...|.|.|.|.+.+..|...
T Consensus 133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~-~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 207 (334)
T 1ry7_B 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG-EHRIGGIKLR----HQQWSLVMESVVPSDRGNYTCVVENKFGSIR 207 (334)
T ss_dssp EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCT-TSSTTCCCCC----TTTTEEEECSCCGGGCCCEEEEEEETTEEEE
T ss_pred EEecCCCcEEEEEEccCCCCCeEEEEECCEECcc-cccccceecc----cceEEEEECCCCcccCEEEEEEEEeCCCCEE
Confidence 4577899999999999999999999998655432 1111000000 0124689999999999999999999888765
Q ss_pred EEEE
Q psy4613 91 SSIR 94 (96)
Q Consensus 91 ~~~~ 94 (96)
..+.
T Consensus 208 ~~~~ 211 (334)
T 1ry7_B 208 QTYT 211 (334)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 354
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=99.06 E-value=3.6e-09 Score=60.46 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=52.9
Q ss_pred eecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 12 GAPIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
.+..|+.+.|.|.+.+. |.| .+.|++++..+...... ... .....+...+.|.|..+...| |.|.|.+.|..|..
T Consensus 230 ~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~-~~~-~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~ 306 (523)
T 2rcj_C 230 KSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFP-AVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 306 (523)
T ss_pred ccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCC-cEe-cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence 45689999999999886 777 79999986543211000 000 011112234689999999999 99999999998875
Q ss_pred EEE
Q psy4613 90 ESS 92 (96)
Q Consensus 90 ~~~ 92 (96)
...
T Consensus 307 ~~~ 309 (523)
T 2rcj_C 307 KVD 309 (523)
T ss_pred ceE
Confidence 443
No 355
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.06 E-value=7.6e-09 Score=53.97 Aligned_cols=76 Identities=11% Similarity=0.174 Sum_probs=45.1
Q ss_pred ecCCCcEEEEEEeee-cccc-eeEEeeccceeEe-----cccc-eEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 13 APIDTDVTLECYVEA-YPKS-INYWVRDQGDMVI-----SSER-YEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
...|..+.|.|.+.+ .|.+ .+.|++++..+.. .... ..........+.....|.+......|.|.|.|.+.|
T Consensus 130 ~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n 209 (248)
T 3pv7_A 130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRH 209 (248)
T ss_dssp ------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEEC
T ss_pred cccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEEC
Confidence 345777889999998 7888 9999998643210 0000 111111222333456788888888899999999999
Q ss_pred CCCc
Q psy4613 85 SLGE 88 (96)
Q Consensus 85 ~~g~ 88 (96)
..+.
T Consensus 210 ~~~~ 213 (248)
T 3pv7_A 210 ASLH 213 (248)
T ss_dssp TTCS
T ss_pred CCCC
Confidence 8775
No 356
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.05 E-value=7.4e-09 Score=54.03 Aligned_cols=72 Identities=19% Similarity=0.317 Sum_probs=49.1
Q ss_pred eeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEccC
Q psy4613 11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
..+..|+.+.|.|.+.+.+ .+.+.|+++. ... +. ...++.+.... ......|.|.++
T Consensus 137 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v 213 (247)
T 1svz_A 137 ELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDT---STSTAFLQINNL 213 (247)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEG---GGTEEEEEECSC
T ss_pred eeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEec---CCCEEEEEECCC
Confidence 3488999999999998864 5689999853 111 10 01233322110 012368999999
Q ss_pred CCCCCeeEEEEEecC
Q psy4613 71 TKYDLGSYKCIAKNS 85 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~ 85 (96)
+..|+|.|.|.+.+.
T Consensus 214 ~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 214 KNEDTATYFCVRDRH 228 (247)
T ss_dssp CGGGCEEEEEEEEEG
T ss_pred ChhHCEEEEEEEecc
Confidence 999999999999884
No 357
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Probab=99.05 E-value=7.1e-10 Score=51.78 Aligned_cols=76 Identities=18% Similarity=0.051 Sum_probs=49.9
Q ss_pred eeecCCCcEEEEEEeeecccceeEEeecccee----Ee---c-----------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDM----VI---S-----------SERYEVESISRSIFDFKMRLTIKKITK 72 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~----~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 72 (96)
..+..|+++.|.|.........+.|++..... +. . ..|..+. .+.+|.|.+++.
T Consensus 10 ~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~--------~ngSL~I~nvt~ 81 (111)
T 2qsq_A 10 FNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIY--------PNASLLIQNIIQ 81 (111)
T ss_dssp SEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEEC--------TTSCEEECSCCG
T ss_pred ceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEe--------cCCcEEEccCcc
Confidence 45789999999998544444578999864211 10 0 1122111 235799999999
Q ss_pred CCCeeEEEEEecCCCc-eEEEEE
Q psy4613 73 YDLGSYKCIAKNSLGE-VESSIR 94 (96)
Q Consensus 73 ~d~g~y~c~~~~~~g~-~~~~~~ 94 (96)
.|.|.|.|.+.+..+. ......
T Consensus 82 ~D~G~Ytc~v~~~~~~~~~~~~~ 104 (111)
T 2qsq_A 82 NDAGFYTLHVIKSDLVNEEATGQ 104 (111)
T ss_dssp GGCEEEEEEEEETTSCCEEEEEE
T ss_pred cCCeEEEEEEEeCCCcEEEEEEE
Confidence 9999999999987653 343333
No 358
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=99.05 E-value=8.8e-09 Score=48.16 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=51.5
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc-cceeEEeec--cc----eeE-ec------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRD--QG----DMV-IS------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~--~~----~~~-~~------------~~~~~~~~~~~~~~~~~~ 63 (96)
+...+..+.+..|++++|.|.+.... ...+.|++. +. ..+ .. ..++..... ....
T Consensus 3 ~~q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~-----~~~~ 77 (114)
T 2hp4_A 3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRL-----GDTF 77 (114)
T ss_dssp EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEE-----TTEE
T ss_pred cEeCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEec-----CCEE
Confidence 44556667889999999999987543 568999874 22 111 10 122222110 0235
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 78 ~L~I~~~~~~Dsg~Y~C~~~~~ 99 (114)
T 2hp4_A 78 VLTLSDFRRENEGYYFCSALSN 99 (114)
T ss_dssp EEEESSCCGGGCEEEEEEEEET
T ss_pred EEEECCCCHHHCEEEEEEEecC
Confidence 7999999999999999998864
No 359
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.05 E-value=4.9e-10 Score=58.58 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=51.5
Q ss_pred ecCCCcEEEEEEeeec---ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 13 APIDTDVTLECYVEAY---PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~---~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
+..|+.+.|.|.+.+. |.+ .+.|++++..+... ............+.....|.|..++..|.|.|.|.+.+..+.
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~ 107 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTA-QTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP 107 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCC-EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCc-ccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCC
Confidence 6789999999999886 666 89999987543211 000000111112224567999999999999999999998774
No 360
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.05 E-value=8.6e-10 Score=56.28 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=48.9
Q ss_pred ecCCCcEEEEEEeeec----ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 13 APIDTDVTLECYVEAY----PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
+..|..+.|.|.+.+. |.|.+.|++++..... ... ...+.|.|..+...|.|.|.|.+.|..+.
T Consensus 135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~--~~~----------~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~ 202 (214)
T 2zg1_A 135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD--PET----------TRSSELTLTPRPEDHGTNLTCQMKRQGAQ 202 (214)
T ss_dssp CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSC--SSC----------CCSSEEEECCCTTCCSCEEEEEEECC---
T ss_pred ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCC--CCc----------eeEEEEEEecccHHcCcEEEEEEEeCCCC
Confidence 4579999999998763 7889999988644221 111 02356888999888999999999997543
Q ss_pred --eEEEEEe
Q psy4613 89 --VESSIRL 95 (96)
Q Consensus 89 --~~~~~~l 95 (96)
....+.|
T Consensus 203 ~~~~~~v~l 211 (214)
T 2zg1_A 203 VTTERTVQL 211 (214)
T ss_dssp -CCEEEEEC
T ss_pred cceEEEEEE
Confidence 3444443
No 361
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.05 E-value=1.5e-08 Score=51.94 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=52.0
Q ss_pred CceeeecCCCcEEEEEEeeecc--cceeEEeecc--ceeEe----------------cccceEEEEeccccceEEEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMVI----------------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+..+.+..|+.+.|.|.+.+.+ .+.+.|+++. ..+.. ...++.+..... .....|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I 83 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETS---ATTAYLQI 83 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGG---GTEEEEEE
T ss_pred CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecC---CCEEEEEE
Confidence 3456789999999999998764 6789999863 22110 012333221110 01367999
Q ss_pred ccCCCCCCeeEEEEEecCC
Q psy4613 68 KKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~ 86 (96)
.+++..|.|.|.|.+.+..
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~ 102 (219)
T 1c1e_H 84 NNLKNEDMATYFCARGTTI 102 (219)
T ss_dssp CSCCGGGCEEEEEEEEETT
T ss_pred CCCCcccCEEEEEEEeccC
Confidence 9999999999999999875
No 362
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=99.05 E-value=4.6e-09 Score=60.64 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=59.8
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeE---ec---------ccceEEEEeccccceEEEEEEEc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMV---IS---------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
|.+...+....+..|+.+.|.|.+.+.+ .+.+.|++++.... .. ..+..+.... .......|.|.
T Consensus 113 p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~L~I~ 190 (585)
T 2ocw_A 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQG--TGQLLFSVVIN 190 (585)
T ss_pred ccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEecc--CCCcEEEEEEc
Confidence 3444455667788999999999998654 56799999864321 11 1222222111 00012379999
Q ss_pred cCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 69 KITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
+++..|.|.|.|.+.+..|.....+.
T Consensus 191 ~v~~~D~G~Y~C~a~n~~g~~~~~~~ 216 (585)
T 2ocw_A 191 QLRLSDAGQYLCQAGDDSNSNKKNAD 216 (585)
T ss_pred cCChhHCeEEEEEeccCCccccceEE
Confidence 99999999999999998886554443
No 363
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.05 E-value=1e-09 Score=57.26 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=55.6
Q ss_pred ecCceeeecCCCcEEEEEEeeecccce-----eEEeeccceeE-----e--cccceEEEEec-----cccceEEEEEEEc
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYPKSI-----NYWVRDQGDMV-----I--SSERYEVESIS-----RSIFDFKMRLTIK 68 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~~~~-----~~w~~~~~~~~-----~--~~~~~~~~~~~-----~~~~~~~~~l~i~ 68 (96)
.++..+.+..|+.+.|.|.+.+.+.+. +.|++.+.... . ........... .........|.|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 87 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP 87 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence 345667788999999999998877665 99988632211 0 00000000000 0000012459999
Q ss_pred cCCCCCCeeEEEEEecCCCceEEEEE
Q psy4613 69 KITKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
+++..|.|.|.|.+.+..+.....+.
T Consensus 88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~ 113 (248)
T 3pv7_A 88 GIQLEEAGEYRCEVVVTPLKAQGTVQ 113 (248)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred CCCHHHCeEEEEEEEeCCccceeEEE
Confidence 99999999999999987765544443
No 364
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A
Probab=99.05 E-value=1.7e-09 Score=51.37 Aligned_cols=89 Identities=24% Similarity=0.277 Sum_probs=54.0
Q ss_pred cCceeeecCCCcEEEEEEeeecccc----eeEEeeccc----e-eE-e---------c----ccceEEEEecccc-----
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKS----INYWVRDQG----D-MV-I---------S----SERYEVESISRSI----- 58 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~----~~~w~~~~~----~-~~-~---------~----~~~~~~~~~~~~~----- 58 (96)
.+..+.+..|+++.|.|.+...+.+ .+.|++... . .. . . ..+..+.......
T Consensus 8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~ 87 (128)
T 3r0n_A 8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTE 87 (128)
T ss_dssp CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCC
T ss_pred cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccc
Confidence 3455778899999999998876544 788998521 0 00 0 0 0111111000000
Q ss_pred -ceEEEEEEEccCCCCCCeeEEEEEec-CCCceEEEEEe
Q psy4613 59 -FDFKMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95 (96)
Q Consensus 59 -~~~~~~l~i~~~~~~d~g~y~c~~~~-~~g~~~~~~~l 95 (96)
......|.|.+++..|+|.|.|.+.. ..|.....+.|
T Consensus 88 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L 126 (128)
T 3r0n_A 88 AELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWL 126 (128)
T ss_dssp CBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEE
Confidence 00124799999999999999998664 55666665554
No 365
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.04 E-value=1.7e-09 Score=58.85 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=56.2
Q ss_pred CceeeecCCCcEEEEEEeeeccc-----------ceeEEeeccceeE----ec--ccceEEEEeccccceEEEEEEEccC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPK-----------SINYWVRDQGDMV----IS--SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~-----------~~~~w~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
...+.+..|+.+.|.|.+.+.|. +.+.|++++.... .. ........ ....|.|.++
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~~ 86 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK-------EKDVLWFRPT 86 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEE-------ETTEEEESSC
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEee-------cCCEEEEccC
Confidence 45567899999999999987554 8999999863211 00 01111111 2257999999
Q ss_pred CCCCCeeEEEEEecCCCceEEEEE
Q psy4613 71 TKYDLGSYKCIAKNSLGEVESSIR 94 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~~g~~~~~~~ 94 (96)
+..|.|.|.|.+.+..+.....+.
T Consensus 87 ~~~D~G~Y~C~a~n~~~~~~~~~~ 110 (349)
T 4dep_C 87 LLNDTGNYTCMLRNTTYCSKVAFP 110 (349)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEE
T ss_pred ChhhCEEEEEEEecCCceEEEEEE
Confidence 999999999999998876655443
No 366
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=99.04 E-value=7.4e-09 Score=48.37 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=50.9
Q ss_pred ecCceeeecCCCcEEEEEEeeec-ccceeEEeeccce-------eEe--c------------ccceEEEEeccccceEEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGD-------MVI--S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~~-------~~~--~------------~~~~~~~~~~~~~~~~~~ 63 (96)
..+..+.+..|++++|.|.+.+. ....+.|++.... .+. . ..++....... ....
T Consensus 3 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~ 79 (115)
T 2atp_B 3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSD---SRRP 79 (115)
T ss_dssp EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTT---SSSC
T ss_pred cCCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCC---CCEE
Confidence 44566779999999999998764 4568999875421 110 0 12222221100 0124
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++.+|+|.|.|.+...
T Consensus 80 ~L~I~~~~~~DsG~Y~C~~~~~ 101 (115)
T 2atp_B 80 FLSIMNVKPEDSDFYFCATVGS 101 (115)
T ss_dssp EEEECSCCGGGCEEEEEEEECS
T ss_pred EEEECCCCHHHCEEEEEeEccC
Confidence 7999999999999999998753
No 367
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.04 E-value=9.2e-09 Score=54.64 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=51.0
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
....+..|+.+.|.|.+.+.+ .+.+.|+++. ... +. ...++....... .....|.|.
T Consensus 142 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~ 218 (276)
T 3auv_A 142 GGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTS---KNTAYLQMN 218 (276)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGG---GTEEEEEEC
T ss_pred CceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCC---CcEEEEEEC
Confidence 345678899999999998765 5789999863 111 10 012333322110 123579999
Q ss_pred cCCCCCCeeEEEEEecC
Q psy4613 69 KITKYDLGSYKCIAKNS 85 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~ 85 (96)
+++..|.|.|.|.+.|.
T Consensus 219 ~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 219 SLRAEDTAVYYCARFVF 235 (276)
T ss_dssp SCCGGGCEEEEEEEECS
T ss_pred CCChhHCEEEEEEEEcC
Confidence 99999999999999997
No 368
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1
Probab=99.04 E-value=1e-08 Score=47.88 Aligned_cols=79 Identities=11% Similarity=0.270 Sum_probs=51.9
Q ss_pred ecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-ec-----------ccceEEEEeccccceEEEEEEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-IS-----------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~~-----------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
..+..+.+..|++++|.|.+.+.. ...+.|++... ..+ .. ..++.+.... ......|.|
T Consensus 4 q~p~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I 80 (114)
T 1u9k_A 4 LEEERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDP---SEAMLQVQM 80 (114)
T ss_dssp -CCEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEG---GGTEEEEEE
T ss_pred cCCccEEEeCCCcEEEEeEecCcccCCceEEEEEeCCCCCCEEEEEEcCCCCccccccCCcEEEEecC---cCCEEEEEE
Confidence 456677899999999999987533 35789998531 111 11 0222222111 112457999
Q ss_pred ccCCCCCCeeEEEEEecCCC
Q psy4613 68 KKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g 87 (96)
.+++.+|+|.|.|.+.+..+
T Consensus 81 ~~~~~~Dsg~Y~C~~~~~~~ 100 (114)
T 1u9k_A 81 TDLQVTDSGLYRCVIYHPPN 100 (114)
T ss_dssp CSCCGGGCEEEEEEEECTTS
T ss_pred CCCChHHCEEEEEEEecCCC
Confidence 99999999999999988654
No 369
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.04 E-value=5.1e-10 Score=57.13 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=47.8
Q ss_pred ecCCCcEEEEEEeeeccc--ceeEEeeccceeEecc-cceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 13 APIDTDVTLECYVEAYPK--SINYWVRDQGDMVISS-ERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~~--~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
...|..+.|.|.+.+.++ +.+.|++++..+.... ............+...+.|.+......|.|.|.|.+.|...
T Consensus 124 ~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~ 201 (213)
T 3r06_A 124 QLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS 201 (213)
T ss_dssp HHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred ecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence 446778999999988654 3899999865543110 00000011112222456788888888889999999998753
No 370
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.04 E-value=9.6e-10 Score=57.84 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=52.5
Q ss_pred eEEecCceeeecCCCcEEEEEEee---ecccceeEEeeccceeEec-----------------ccceEEEEeccccceEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVE---AYPKSINYWVRDQGDMVIS-----------------SERYEVESISRSIFDFK 62 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~---~~~~~~~~w~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 62 (96)
.+..++..+.+..|+.+.|.|.+. +.+.+.+.|++.+...... ..+..+.. ......
T Consensus 7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~ 83 (268)
T 3mj6_A 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG---DTFHND 83 (268)
T ss_dssp -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECS---CTTTTB
T ss_pred ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEee---cCCCCE
Confidence 455566778899999999999987 6677789999864321100 01111100 000012
Q ss_pred EEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
..|.|.+++..|.|.|.|.+.+..+.
T Consensus 84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~ 109 (268)
T 3mj6_A 84 GSLLLQDVQKADEGIYTCEIRLKNES 109 (268)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTCC
T ss_pred EEEEECCCCHhHCEEEEEEEEecCCc
Confidence 56999999999999999999886543
No 371
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.04 E-value=1.5e-08 Score=53.23 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=50.4
Q ss_pred CceeeecCCCcEEEEEEeeec--ccceeEEeeccc----eeEe-------------cccceEEEEeccccceEEEEEEEc
Q psy4613 8 NQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----DMVI-------------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
+....+..|+.+.|.|.+.+. +.+.+.|++... .... ...++.+..... .....|.|.
T Consensus 15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~ 91 (257)
T 3gkz_A 15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTS---KNQVYLQLK 91 (257)
T ss_dssp ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGG---GTEEEEEEC
T ss_pred CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecC---CceEEEEEC
Confidence 344568899999999999884 467899988421 1110 012333222110 123579999
Q ss_pred cCCCCCCeeEEEEEecC
Q psy4613 69 KITKYDLGSYKCIAKNS 85 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~ 85 (96)
+++..|+|.|.|.+.+.
T Consensus 92 ~v~~~DsG~Y~C~~~n~ 108 (257)
T 3gkz_A 92 SVSSEDTATYYCSYFDS 108 (257)
T ss_dssp SCCGGGCEEEEEEEECT
T ss_pred CCChhhCEEEEEEEecC
Confidence 99999999999999886
No 372
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=99.03 E-value=6.9e-09 Score=50.82 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=53.3
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc-----e--eEec--------------ccceEEEEeccccc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG-----D--MVIS--------------SERYEVESISRSIF 59 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~-----~--~~~~--------------~~~~~~~~~~~~~~ 59 (96)
|.+...+..+.+..|+.+.|.|.+.+. ....+.|++... . ++.. ..++.+.....
T Consensus 2 ~~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~--- 78 (150)
T 3dmm_D 2 SALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSD--- 78 (150)
T ss_dssp --CEEECSEEEEETTSCEEEEEECCCSSCCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTT---
T ss_pred CccEECCCeEEEeCCCcEEEEEEecCCCCCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCC---
Confidence 556677778889999999999998764 556899997631 1 1110 11222211010
Q ss_pred eEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 60 DFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 60 ~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.....|.|.+++.+|+|.|.|.+...
T Consensus 79 ~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 104 (150)
T 3dmm_D 79 SRRPFLSIMNVKPEDSDFYFCATVGS 104 (150)
T ss_dssp SSSCEEEESSCCGGGCEEEEEEEECS
T ss_pred CCEEEEEECCCChhhCEEEEEEEecC
Confidence 12357999999999999999998753
No 373
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=99.03 E-value=1.9e-08 Score=51.75 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=54.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-e--c------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-I--S------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~--~------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|+.+.|.|.+.+...+.+.|++... ..+ . . ..++...... ......|.|.+
T Consensus 5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~ 81 (210)
T 2eys_A 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA---DTKQSSLHITA 81 (210)
T ss_dssp CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET---TTTEEEEEESS
T ss_pred eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcC---CCCEEEEEEcc
Confidence 34556677889999999999998776667899997531 111 1 1 1222221110 01236799999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|+|.|.|.+.+.
T Consensus 82 ~~~~Dsg~Y~C~~~~~ 97 (210)
T 2eys_A 82 SQLSDSASYICVVSDR 97 (210)
T ss_dssp CCGGGCEEEEEEEESC
T ss_pred CCcccCceEEEEEEcc
Confidence 9999999999999873
No 374
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.02 E-value=5.2e-09 Score=54.88 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=51.7
Q ss_pred ceeeecCCCcEEEEEEeeec--ccceeEEeeccc----eeEe---------cccceEEEEeccccceEEEEEEEccCCCC
Q psy4613 9 QLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----DMVI---------SSERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
..+.+..|+.+.|.|.+.+. +.+.+.|++... ..+. ...++...... ....|.|.+++..
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~ 84 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG-----TSASLAITGLQSE 84 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-----TEEEEEECSCCGG
T ss_pred CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC-----CEEEEEECCCChh
Confidence 45778999999999999876 678999998421 1111 11233322110 2357999999999
Q ss_pred CCeeEEEEEecCCC
Q psy4613 74 DLGSYKCIAKNSLG 87 (96)
Q Consensus 74 d~g~y~c~~~~~~g 87 (96)
|+|.|.|.+.+..+
T Consensus 85 DsG~Y~C~~~~~~~ 98 (256)
T 3ux9_B 85 DEADYYCQVRDNNE 98 (256)
T ss_dssp GCEEEEEEEEETTT
T ss_pred hCEEEEEEEEECCC
Confidence 99999999988543
No 375
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.02 E-value=2.9e-09 Score=55.71 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=51.9
Q ss_pred eeeecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..|+.+.|.|.+ .+.+.+.+.|++++..+... . ....|.|..++..|.|.|.|.+.+..+.
T Consensus 91 ~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-------~-------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~ 156 (262)
T 3rjd_A 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-------H-------WNSNLTILKTNISHNGTYHCSGMGKHRY 156 (262)
T ss_dssp CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-------E-------ECCCEEESSCCGGGCEEEEEEEESSSEE
T ss_pred CeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-------C-------CCCeEEEEECChhhCEEEEEEEeCCCCc
Confidence 3456789999999998 66777899999986554211 0 1256889999999999999999998765
Q ss_pred eEE
Q psy4613 89 VES 91 (96)
Q Consensus 89 ~~~ 91 (96)
...
T Consensus 157 ~~~ 159 (262)
T 3rjd_A 157 TSA 159 (262)
T ss_dssp EEE
T ss_pred ccc
Confidence 444
No 376
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.02 E-value=1.3e-08 Score=53.08 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=48.1
Q ss_pred eeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE---e------------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 11 VGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV---I------------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
..+..|+.+.|.|.+.+.+ .+.+.|++.. ..+. . ...++...... ......|.|.+++
T Consensus 132 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~ 208 (242)
T 2znx_A 132 SLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDT---SKNQYYLDLNSVT 208 (242)
T ss_dssp SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEET---TTTEEEEEECSCC
T ss_pred ceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecC---CCCEEEEEECCCC
Confidence 3478899999999998765 4689999852 2111 0 01233322110 0123579999999
Q ss_pred CCCCeeEEEEEec
Q psy4613 72 KYDLGSYKCIAKN 84 (96)
Q Consensus 72 ~~d~g~y~c~~~~ 84 (96)
..|+|.|.|.+.+
T Consensus 209 ~~D~G~Y~C~a~~ 221 (242)
T 2znx_A 209 TEDTATYYCANXD 221 (242)
T ss_dssp GGGCEEEEEEETT
T ss_pred cCcCEEEEEeccC
Confidence 9999999999987
No 377
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.02 E-value=4.9e-09 Score=53.66 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=51.4
Q ss_pred CceeeecCCCcEEEEEEee-ecc-cceeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVE-AYP-KSINYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKITK 72 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~-~~~-~~~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 72 (96)
+..+.+..|+.+.|.|.+. +.+ .+.+.|++.+. .. .. ...++..... .....|.|.+++.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~~ 81 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKS-----GTSATLGITGLQT 81 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE-----TTEEEEEECSCCG
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEecc-----CCEEEEEECCCCc
Confidence 4567899999999999954 432 57899998531 11 10 0123332210 1235799999999
Q ss_pred CCCeeEEEEEecCCC
Q psy4613 73 YDLGSYKCIAKNSLG 87 (96)
Q Consensus 73 ~d~g~y~c~~~~~~g 87 (96)
.|.|.|.|.+.+..+
T Consensus 82 ~D~G~Y~C~~~~~~~ 96 (216)
T 2xzc_L 82 GDEADYYCGTWDSSL 96 (216)
T ss_dssp GGCEEEEEEEECTTS
T ss_pred ccCEEEEEEEEeCCC
Confidence 999999999998765
No 378
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.02 E-value=9.2e-09 Score=54.16 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=52.6
Q ss_pred CceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+..+.+..|+.+.|.|.+.+.+ .+.+.|++.. ... +. ...++.+..... .....|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I 83 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKP---SSTAYMQL 83 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETT---TTEEEEEE
T ss_pred CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecC---CCEEEEEE
Confidence 3456789999999999998765 5789999852 111 10 012333322100 02357999
Q ss_pred ccCCCCCCeeEEEEEecCCC
Q psy4613 68 KKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g 87 (96)
.+++..|+|.|.|.+.+..|
T Consensus 84 ~~v~~~DsG~Y~C~~~n~~g 103 (256)
T 1nqb_A 84 SSLTSEDSAVYYCARYDYYG 103 (256)
T ss_dssp CSCCGGGCEEEEEEECCTTS
T ss_pred CcCChhhCEEEEEEEeeccC
Confidence 99999999999999998755
No 379
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.02 E-value=2.8e-09 Score=56.71 Aligned_cols=67 Identities=21% Similarity=0.242 Sum_probs=51.9
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+ .+.|++++..+. .... ....|.|.+++..|.|.|.|
T Consensus 12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~------~~~~-------~~~~L~i~~~~~~d~G~Y~C 74 (290)
T 2o26_X 12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE------MVEN-------KKNEWIQEKAEATRTGTYTC 74 (290)
T ss_dssp CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC------EEEE-------CSSEEEETTCCGGGCEEEEE
T ss_pred CCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee------eecC-------CCceEEEeccCHHhCeEEEE
Confidence 366666667788999999999999877 889999865441 0111 11579999999999999999
Q ss_pred EEec
Q psy4613 81 IAKN 84 (96)
Q Consensus 81 ~~~~ 84 (96)
.+.+
T Consensus 75 ~~~n 78 (290)
T 2o26_X 75 SNSN 78 (290)
T ss_dssp EESS
T ss_pred EeeC
Confidence 9988
No 380
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.02 E-value=9e-09 Score=53.11 Aligned_cols=78 Identities=12% Similarity=0.261 Sum_probs=50.3
Q ss_pred cCCCcEEEEEEeeec-ccc-eeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCC--CCCeeEEEEEecCCCc
Q psy4613 14 PIDTDVTLECYVEAY-PKS-INYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITK--YDLGSYKCIAKNSLGE 88 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~-~~~-~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~c~~~~~~g~ 88 (96)
..|..+.|.|.+.+. |.+ .+.|++ ++..+.. ....... .....+...+.|.|..... .|.|.|.|.+.+..+.
T Consensus 139 ~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~-~~~~~~~-~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~ 216 (223)
T 1dee_B 139 NPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISS-TRGFPSV-LRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN 216 (223)
T ss_dssp CSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSC-EEECCCE-EETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred CCCCcEEEEEEEEEEeCCCeEEEeEccCCCccce-eEECCcc-ccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence 578899999999886 666 899999 6544321 0000000 0011222346678877765 7789999999999887
Q ss_pred eEEEE
Q psy4613 89 VESSI 93 (96)
Q Consensus 89 ~~~~~ 93 (96)
....+
T Consensus 217 ~~~~~ 221 (223)
T 1dee_B 217 KEKDV 221 (223)
T ss_dssp EEEEE
T ss_pred Ccccc
Confidence 66544
No 381
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.02 E-value=1.5e-10 Score=61.00 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=51.6
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
...+..|+.+.|.|.+.+.|.|.+.|++++.... ... .+ ..++..|.|.|.|.+.|..|..
T Consensus 194 ~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~-~~g----------------~~--~~v~~~d~G~Y~C~a~N~~G~~ 254 (265)
T 2oz4_A 194 NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL-PIG----------------ES--VTVTRDLEGTYLCRARSTQGEV 254 (265)
T ss_dssp EEEEETTCEECCCCCCEEESCCEEEEEETTTEEC-CTT----------------SC--EECCGGGCEEEEEEEEETTEEE
T ss_pred ccEEcCCCeEEEEeECccCCCCeEEEEECCcccC-CCC----------------cE--EEeehhhCeEEEEEEECCCCcE
Confidence 4567889999999999999999999999875221 110 11 1367799999999999999987
Q ss_pred EEEEEe
Q psy4613 90 ESSIRL 95 (96)
Q Consensus 90 ~~~~~l 95 (96)
...+.|
T Consensus 255 ~~~~~l 260 (265)
T 2oz4_A 255 TREVTV 260 (265)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776654
No 382
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=99.02 E-value=2.9e-08 Score=47.13 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=53.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c-----------ccceEEEEeccccceEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S-----------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~-----------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+..++..+.+..|++++|.|.........+.|++.. . .++. . ..++...... .....|.
T Consensus 7 ~V~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~----~~~~sL~ 82 (125)
T 3r8b_B 7 AVTQSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPS----QENFSLI 82 (125)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEE----TTEEEEE
T ss_pred cEEecCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecC----CCEEEEE
Confidence 4566777788999999999999876554589999742 1 1111 0 1122222110 1246799
Q ss_pred EccCCCCCCeeEEEEEec
Q psy4613 67 IKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~ 84 (96)
|.+++.+|+|.|.|.+..
T Consensus 83 I~~~~~~Dsg~Y~C~~~~ 100 (125)
T 3r8b_B 83 LELATPSQTSVYFCASGG 100 (125)
T ss_dssp ETTCCGGGCEEEEEEEEE
T ss_pred ECCCChhhCEEEEEEEcC
Confidence 999999999999999875
No 383
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A
Probab=99.01 E-value=1.2e-09 Score=50.70 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=50.3
Q ss_pred cCceeeecCCCcEEEEEEe-eecccceeEEeeccce-eEe-c-c-----------cceEEEEeccccceEEEEEEEccCC
Q psy4613 7 PNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGD-MVI-S-S-----------ERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~-~~~-~-~-----------~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
+...+.+..|++++|.|.. .+.+.+.+.|++.... +.. . . .++.+.. ....|.|.+++
T Consensus 9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~-------~~~sL~I~~v~ 81 (110)
T 2ptt_A 9 SIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE-------NNGALHISNVR 81 (110)
T ss_dssp CCCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT-------TTCCEEESSCC
T ss_pred CCCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC-------CCccEEECCCC
Confidence 3455778999999999998 6666778999984322 110 0 0 1221110 12469999999
Q ss_pred CCCCeeEEEEEecCC
Q psy4613 72 KYDLGSYKCIAKNSL 86 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~ 86 (96)
..|+|.|.|.+.+..
T Consensus 82 ~~DsG~Y~C~v~~~~ 96 (110)
T 2ptt_A 82 KEDKGTYYMRVLRET 96 (110)
T ss_dssp GGGCEEEEEEEESSS
T ss_pred cccCeEEEEEEEcCC
Confidence 999999999998754
No 384
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.01 E-value=5.8e-10 Score=62.54 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=53.2
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+..|+.+.|.|.+.+.|.|.+.|++++...... .. .+ .+...|.|.|.|.+.|..|.
T Consensus 378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~-g~---------------~~---~v~~~d~G~Y~C~a~N~~G~ 438 (450)
T 1z7z_I 378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-GE---------------SV---TVTRDLEGTYLCRARSTQGE 438 (450)
T ss_dssp SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-TS---------------CE---ECCGGGCEEEEEEEEETTEE
T ss_pred CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC-CC---------------eE---eEehhhCeEEEEEEEeCCCc
Confidence 4556788999999999999999999999987532211 10 11 46778999999999999998
Q ss_pred eEEEEEe
Q psy4613 89 VESSIRL 95 (96)
Q Consensus 89 ~~~~~~l 95 (96)
....+.|
T Consensus 439 ~~~~~~l 445 (450)
T 1z7z_I 439 VTREVTV 445 (450)
T ss_dssp EEEEEEE
T ss_pred eeEEEEE
Confidence 8777665
No 385
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.00 E-value=2.6e-09 Score=55.49 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=53.4
Q ss_pred cCceeeecCCCcEEEEEEeeec-cc-c-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAY-PK-S-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~-~~-~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
.+....+..|+.+.|.|.+.+. |. + .+.|++++..+...... .........+.....|.|..+...|.|.|.|.+.
T Consensus 19 ~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~-~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~ 97 (231)
T 2w59_A 19 PPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM-VLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ 97 (231)
T ss_dssp CCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC-EEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred CcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc-cceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence 4444556789999999999885 53 5 89999876554111111 1111111222245678999998899999999999
Q ss_pred cCCCc
Q psy4613 84 NSLGE 88 (96)
Q Consensus 84 ~~~g~ 88 (96)
+..+.
T Consensus 98 ~~~~~ 102 (231)
T 2w59_A 98 HEELP 102 (231)
T ss_dssp CTTCS
T ss_pred cCCCC
Confidence 87654
No 386
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.00 E-value=1.7e-08 Score=55.05 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=51.2
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE---e-------------cccceEEEEeccccceEEEEEEEc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV---I-------------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---~-------------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
..+.+..|+.+.|.|.+.+.+ .+.+.|+++. ..+. . ...++.+.... ......|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~I~ 84 (344)
T 1za6_B 8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADT---SASTAYVELS 84 (344)
T ss_dssp CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEET---TTTEEEEEEC
T ss_pred CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEec---CCCEEEEEEC
Confidence 346789999999999998763 5789999862 2211 0 01233332210 0123579999
Q ss_pred cCCCCCCeeEEEEEecCC
Q psy4613 69 KITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~ 86 (96)
+++..|.|.|.|.+.+..
T Consensus 85 ~v~~~D~G~Y~C~~~n~~ 102 (344)
T 1za6_B 85 SLRSEDTAVYFCTRSLNM 102 (344)
T ss_dssp SCCGGGCEEEEEEETTTT
T ss_pred CCCcccCEEEEEEEecCc
Confidence 999999999999998854
No 387
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.00 E-value=2.4e-10 Score=59.09 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=43.5
Q ss_pred CCCcEEEEEEeeecc-cc-eeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 15 IDTDVTLECYVEAYP-KS-INYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 15 ~g~~~~l~c~~~~~~-~~-~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|+.+.|.|.+.+.+ .+ .+.|++++..+... .............+...+.|.|......|.|.|.|.+.|...
T Consensus 148 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 148 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp HTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred cCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 588999999998854 33 69999986544211 000000001111222456788888888899999999998644
No 388
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=99.00 E-value=1.8e-08 Score=47.61 Aligned_cols=79 Identities=19% Similarity=0.315 Sum_probs=52.6
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c-----------ccceEEEEeccccceEEEEE
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S-----------SERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~-----------~~~~~~~~~~~~~~~~~~~l 65 (96)
+.+...+..+.+..|++++|.|... .....+.|++... .++. . ..++.... . ......|
T Consensus 2 ~~v~q~p~~v~v~~G~~vtL~C~~~-~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~R~~~~~-~---~~~~~sL 76 (121)
T 2oi9_C 2 AAVTQSPRNKVAVTGEKVTLSCNQT-NNHNNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASR-P---SQENFSL 76 (121)
T ss_dssp CSEEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEESSSSCCEEEEEESSTTCCEECSSCTTEEEEC-C---SSSEEEE
T ss_pred CceEeCCCeEEecCCCcEEEEEEec-CCCCeEEEEEECCCCCcEEEEEECCCceeeCCccCCCeEEEc-C---CCCEEEE
Confidence 3456667778899999999999953 3456899987531 1111 0 11222211 0 0124679
Q ss_pred EEccCCCCCCeeEEEEEecC
Q psy4613 66 TIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.+++.+|+|.|.|.+.+.
T Consensus 77 ~I~~v~~~DsG~Y~C~~~~~ 96 (121)
T 2oi9_C 77 TLESATPSQTSVYFCASGGG 96 (121)
T ss_dssp EESSCCGGGCEEEEEEEESS
T ss_pred EECCCCHHHCEEEEEEEccC
Confidence 99999999999999998864
No 389
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1
Probab=99.00 E-value=1.8e-08 Score=47.38 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=48.7
Q ss_pred cCceeeecCCCcEEEEEEeeec----ccceeEEeeccce------eEe-c------------ccceEEEEeccccceEEE
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAY----PKSINYWVRDQGD------MVI-S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~----~~~~~~w~~~~~~------~~~-~------------~~~~~~~~~~~~~~~~~~ 63 (96)
.+..+.+..|+++.|.|.+... ....+.|++.... +.. . ..+..+.. +......
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~ 81 (124)
T 1neu_A 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG---DPSWKDG 81 (124)
T ss_dssp CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECC---BGGGTBC
T ss_pred cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEec---CCcCCeE
Confidence 3456778999999999998643 4568899876431 110 0 01111110 0000124
Q ss_pred EEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.|.|.+++..|+|.|.|.+.+..+.
T Consensus 82 sL~I~~v~~~D~G~Y~C~v~~~~~~ 106 (124)
T 1neu_A 82 SIVIHNLDYSDNGTFTCDVKNPPDI 106 (124)
T ss_dssp CEEECSCCGGGCEEEEEEEEC----
T ss_pred EEEEccCChhhCEEEEEEEEcCCCC
Confidence 6999999999999999999987653
No 390
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.00 E-value=3.7e-09 Score=56.35 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=49.1
Q ss_pred eeecCCCcEEEEEEeee-cc-cceeEEeecc--ceeEe-----------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 11 VGAPIDTDVTLECYVEA-YP-KSINYWVRDQ--GDMVI-----------SSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~-~~-~~~~~w~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
..+..|++++|.|.+.+ .+ .+.+.|++.. ..... ...++...... ....|.|.+++..|+
T Consensus 149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~v~~~Ds 223 (280)
T 3fku_X 149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSG-----NTASLTITGLQPEDE 223 (280)
T ss_dssp EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEET-----TEEEEEECSCCGGGC
T ss_pred EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCCHHHC
Confidence 67889999999999987 33 4789998742 11110 01233332211 235699999999999
Q ss_pred eeEEEEEecCC
Q psy4613 76 GSYKCIAKNSL 86 (96)
Q Consensus 76 g~y~c~~~~~~ 86 (96)
|.|.|.+.+..
T Consensus 224 G~Y~C~~~~~~ 234 (280)
T 3fku_X 224 ADYYCSTWDSS 234 (280)
T ss_dssp SEEEEEEEETT
T ss_pred EEEEEEEecCC
Confidence 99999998765
No 391
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Probab=99.00 E-value=4.9e-08 Score=46.90 Aligned_cols=80 Identities=15% Similarity=0.289 Sum_probs=52.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc-cceeEEeecc--c--eeEe--c--------ccceEEEEeccccceEEEEEEEc
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQ--G--DMVI--S--------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~--~--~~~~--~--------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
+...+..+.+..|++++|.|...... ...+.|++.. . ..+. . ..++...... ......|.|.
T Consensus 12 v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~L~I~ 88 (134)
T 3bik_B 12 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP---NRHDFHMNIL 88 (134)
T ss_dssp EEEECSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECT---TSSEEEEEEC
T ss_pred EEECCCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecC---CCCEEEEEEC
Confidence 34456677899999999999987643 4689999752 1 1111 0 1233322111 1124679999
Q ss_pred cCCCCCCeeEEEEEecCC
Q psy4613 69 KITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~ 86 (96)
+++..|+|.|.|.+.+..
T Consensus 89 ~~~~~Dsg~Y~C~~~~~~ 106 (134)
T 3bik_B 89 DTRRNDSGIYLCGAISLH 106 (134)
T ss_dssp SCCGGGCEEEEEEEEECS
T ss_pred CCChHHCEEEEEEEEeCC
Confidence 999999999999987643
No 392
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.00 E-value=1.1e-09 Score=55.89 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=52.7
Q ss_pred cCceee-ecCCCcEEEEEEeeecc---c-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 7 PNQLVG-APIDTDVTLECYVEAYP---K-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 7 ~~~~~~-~~~g~~~~l~c~~~~~~---~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
++.... +..|+.+.|.|.+.+.+ . ..+.|++++..+......... ......+.....|.|.+++..|.|.|.|.
T Consensus 8 ~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 86 (207)
T 2vol_A 8 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPRE-EQFNSTFRSVSELPIMHQDWLNGKEFKCR 86 (207)
T ss_dssp CCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCC-EETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred CcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCc-CcCCCcEEEEEEEEEehhHcCCCCEEEEE
Confidence 444333 78999999999998874 2 389999987543211000000 00111122346789999999999999999
Q ss_pred EecCCCc
Q psy4613 82 AKNSLGE 88 (96)
Q Consensus 82 ~~~~~g~ 88 (96)
+.+..+.
T Consensus 87 a~~~~~~ 93 (207)
T 2vol_A 87 VNSAAFP 93 (207)
T ss_dssp EECTTCS
T ss_pred EEccCCC
Confidence 9998774
No 393
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=98.99 E-value=2.7e-08 Score=50.95 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=54.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
.+...+..+.+..|+.+.|.|.+.+.. +.+.|++... ..+. ...++...... .......|.|.+++
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~~L~I~~v~ 79 (207)
T 1ypz_E 3 QVEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDS--KERRYSTLHIRDAQ 79 (207)
T ss_dssp SEEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECT--TTCSEEEEEECSCC
T ss_pred ccEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEecc--CCCCEEEEEECCCC
Confidence 355667778899999999999987643 4799987531 1111 12333333210 00124679999999
Q ss_pred CCCCeeEEEEEecC
Q psy4613 72 KYDLGSYKCIAKNS 85 (96)
Q Consensus 72 ~~d~g~y~c~~~~~ 85 (96)
..|+|.|.|.+.+.
T Consensus 80 ~~D~G~Y~C~~~~~ 93 (207)
T 1ypz_E 80 LEDSGTYFCAADTW 93 (207)
T ss_dssp GGGCEEEEEEEECB
T ss_pred HHHCEEEEEEEecC
Confidence 99999999999875
No 394
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1
Probab=98.99 E-value=2.4e-08 Score=45.76 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=56.1
Q ss_pred ceeeecCCCcEEEEEEeee-cccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCC
Q psy4613 9 QLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~-~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
....+..|..+.|.|.+.. .+.|.+.|-+.+...... ..+.+.+....+. ....|.+..+...|.|.|.|.+....
T Consensus 19 S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~--s~fvLhf~~V~~sDsGsYRCsAn~~s 96 (120)
T 2aw2_A 19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNI--SFFILHFEPVLPNDNGSYRCSANFQS 96 (120)
T ss_dssp EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSC--EEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred ccceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecCCe--eEEEEEEeeeeEcCCcceEEEeeCCC
Confidence 3456789999999999998 689999998865422211 1222222211111 34678999999999999999999887
Q ss_pred CceE
Q psy4613 87 GEVE 90 (96)
Q Consensus 87 g~~~ 90 (96)
|...
T Consensus 97 g~ie 100 (120)
T 2aw2_A 97 NLIE 100 (120)
T ss_dssp EEEE
T ss_pred CcEE
Confidence 7643
No 395
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=98.99 E-value=2e-09 Score=57.81 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=53.8
Q ss_pred eeecCCCcEEEEEEe------eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEe-
Q psy4613 11 VGAPIDTDVTLECYV------EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK- 83 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~------~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~- 83 (96)
..+..|+.+.|.|.+ .+.|.+.+.|++++..+.....+... ....|.|.++...|.|.|.|.+.
T Consensus 113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~~ 183 (315)
T 1itb_B 113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG---------VKDRLIVMNVAEKHRGNYTCHASY 183 (315)
T ss_dssp EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEE---------ETTEEEESSCCGGGCEEEEEEEEE
T ss_pred eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEee---------cCceEEEEeceehhCcEEEEEEEc
Confidence 457789999999998 78888999999987665432223221 12479999999999999999999
Q ss_pred cCCCce
Q psy4613 84 NSLGEV 89 (96)
Q Consensus 84 ~~~g~~ 89 (96)
+..|..
T Consensus 184 n~~g~~ 189 (315)
T 1itb_B 184 TYLGKQ 189 (315)
T ss_dssp EETTEE
T ss_pred CCCCcE
Confidence 677754
No 396
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=98.99 E-value=6.8e-09 Score=58.01 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=56.4
Q ss_pred eEEecCceeeecCCCcEEEEEEeeeccc----ceeEEeecc--cee--Ee---------cccceEEEEeccccceEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPK----SINYWVRDQ--GDM--VI---------SSERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~~~~l 65 (96)
.+...+..+.+..|+.+.|.|.+.+.+. +.+.|+++. ..+ .. ...++..... .....|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L 77 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGS-----RTDFTL 77 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEE-----TTEEEE
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEcc-----CCcEEE
Confidence 3455667788999999999999888776 489999853 111 10 1123333221 024679
Q ss_pred EEccCCCCCCeeEEEEEecCCC
Q psy4613 66 TIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.+++..|.|.|.|.+.+..+
T Consensus 78 ~I~~v~~~D~G~Y~C~a~n~~~ 99 (438)
T 1qgc_4 78 TIDPVEADDVATYYCQQSNEVP 99 (438)
T ss_dssp EESSCCGGGCEEEEEEECSSTT
T ss_pred EeCCCcCcCCeeEEEEEecCCC
Confidence 9999999999999999998765
No 397
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=98.99 E-value=1.4e-08 Score=52.45 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=51.5
Q ss_pred eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEcc
Q psy4613 10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+.+..|+.+.|.|.+.+.+ .+.+.|++.. ..+ .. ...++.+..... .....|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~ 85 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDL---EDFVYLQMHK 85 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETT---TTEEEEEECS
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCC---CCEEEEEECC
Confidence 45789999999999998765 6789998753 111 10 012333322100 0236799999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|.|.|.|.+.+..|
T Consensus 86 v~~~D~G~Y~C~~~~~~~ 103 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDR 103 (225)
T ss_dssp CCGGGCEEEEEEEECCSS
T ss_pred CChhhCEEEEEEEecCCC
Confidence 999999999999998754
No 398
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=98.99 E-value=6.6e-10 Score=55.61 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=51.8
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEec-------------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-------------SERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
.+.+..|+.+.|.|.+.+.+.+.+.|++++...... ..+..... .........|.|.+++..|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L~i~~v~~~D~G 81 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--SLWDQGNFPLIIKNLKIEDSD 81 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCG--GGGGGTBCCEEECSCCGGGCE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCcccccc--ccccCCeEEEEEecCCHHHCE
Confidence 456889999999999988888899999986532211 01111100 000001345999999999999
Q ss_pred eEEEEEecCCC
Q psy4613 77 SYKCIAKNSLG 87 (96)
Q Consensus 77 ~y~c~~~~~~g 87 (96)
.|.|.+.+..+
T Consensus 82 ~Y~C~~~~~~~ 92 (184)
T 2ny1_B 82 TYICEVEDQKE 92 (184)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEEEcCCC
Confidence 99999987654
No 399
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=98.99 E-value=3.5e-09 Score=56.01 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=51.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+. ..+..|+.++|.|.+.. +.+.+.|++++..+.... .. ...........|.|.+++..|+|.|.|
T Consensus 7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~----~~-~~~~~~~~~~~L~I~~v~~~DsG~Y~C 79 (257)
T 1b6u_A 7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLH----LI-GEHHDGVSKANFSIGPMMQDLAGTYRC 79 (257)
T ss_dssp CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEE----EE-CBCCTTCEEEEEEECSCCTTTCEEEEE
T ss_pred CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcce----ee-eeccCCCceEEEEeecCCcccCEEEEE
Confidence 355655554 55789999999999864 566889999865432110 00 000001134679999999999999999
Q ss_pred EEec
Q psy4613 81 IAKN 84 (96)
Q Consensus 81 ~~~~ 84 (96)
.+.+
T Consensus 80 ~a~~ 83 (257)
T 1b6u_A 80 YGSV 83 (257)
T ss_dssp EEEC
T ss_pred eEec
Confidence 9875
No 400
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=98.99 E-value=5.8e-09 Score=53.57 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=51.5
Q ss_pred cCCCcE-EEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 14 PIDTDV-TLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 14 ~~g~~~-~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
..|..+ .|.|.+. +.|.+.+.|++++...... ..........+...+.|.|......|.|.|.|.+.|..+....
T Consensus 128 ~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~---~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~ 204 (221)
T 3eow_R 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQT---SQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQ 204 (221)
T ss_dssp CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCC---EEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCE
T ss_pred cCCceEEEEEEECCCccCCCeeEEEeCCCCCCcc---ceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCe
Confidence 456777 5999987 7888999998763322110 0000111112224577999999999999999999998876554
Q ss_pred EEE
Q psy4613 92 SIR 94 (96)
Q Consensus 92 ~~~ 94 (96)
.+.
T Consensus 205 ~~~ 207 (221)
T 3eow_R 205 LLT 207 (221)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 401
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Probab=98.99 E-value=8.2e-08 Score=45.43 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=52.2
Q ss_pred EecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc-----eeEec--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG-----DMVIS--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
...+..+.+..|++++|.|...... ...+.|++... .++.. ..++.+..... .....|.|.+
T Consensus 14 ~~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~~ 90 (122)
T 1hkf_A 14 QSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPD---AGFFTVTMTD 90 (122)
T ss_dssp -CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETT---TTEEEEEECS
T ss_pred ccCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCc---CCEEEEEEeC
Confidence 4456677899999999999987532 35789987632 11111 12333221111 1246799999
Q ss_pred CCCCCCeeEEEEEecCC
Q psy4613 70 ITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~ 86 (96)
++..|+|.|.|.+....
T Consensus 91 l~~~Dsg~Y~C~v~~~~ 107 (122)
T 1hkf_A 91 LREEDSGHYWCRIYRPS 107 (122)
T ss_dssp CCGGGCEEEEEEEECTT
T ss_pred CCHHHCEEEEEEEEcCC
Confidence 99999999999998754
No 402
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=98.98 E-value=9.9e-10 Score=61.35 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=49.5
Q ss_pred CCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEE--eccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVES--ISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.|+.+.|.|.+.+ .|.+ .+.|++++..+. ......... .....+.....|.|..+...|.|.|.|.+.|..+.
T Consensus 130 ~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 206 (438)
T 1qgc_4 130 TSGGASVVCFLNNFYPKDINVKWKIDGSERQ-NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 206 (438)
T ss_dssp HTTEEEEEEEEEEEBSSCEEEEEEETTEEEC-TTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred cCCceEEEEEEccccCCCcEEEEEECCEEcC-CCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccC
Confidence 4779999999987 5666 899999865442 110111110 01112223568999999999999999999998776
No 403
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=98.98 E-value=3.9e-09 Score=53.82 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=52.3
Q ss_pred ceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEec-c--------------cceEEEEec--cccceEEEEEEEc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVIS-S--------------ERYEVESIS--RSIFDFKMRLTIK 68 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~-~--------------~~~~~~~~~--~~~~~~~~~l~i~ 68 (96)
..+.+..|+++.|.|.+.+.+.+ .+.|++++...... . .+....... ........+|.|.
T Consensus 9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 35678899999999999876655 47899876443210 0 011100000 0000123569999
Q ss_pred cCCCCCCeeEEEEEecCCCceE
Q psy4613 69 KITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+++..|.|.|.|.+.+..+...
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~ 110 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTR 110 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEE
T ss_pred cCCHHHCcceEEEEEeCCCcce
Confidence 9999999999999988666443
No 404
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=98.98 E-value=2.4e-09 Score=62.50 Aligned_cols=65 Identities=23% Similarity=0.326 Sum_probs=52.6
Q ss_pred ceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
....+..|..+.|.|.+.+.|.+.+.|++++..+. ....|.|.++...|.|.|.|.+.|..|.
T Consensus 389 ~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~-----------------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 451 (642)
T 1e07_A 389 SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ-----------------HTQELFISNITEKNSGLYTCQANNSASG 451 (642)
T ss_pred CceEecCCCcEEEEEEcCccCCCeEEEEECCEEcC-----------------CCceEEEccCChhhCeEEEEEEEcCCCC
Confidence 34456789999999999999999999999864432 1145889999999999999999998875
Q ss_pred eE
Q psy4613 89 VE 90 (96)
Q Consensus 89 ~~ 90 (96)
..
T Consensus 452 ~~ 453 (642)
T 1e07_A 452 HS 453 (642)
T ss_pred Cc
Confidence 43
No 405
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=98.98 E-value=4.1e-09 Score=54.46 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=51.3
Q ss_pred CceeeecCCCcEEEEEEeeecc-cc-eeEEeeccc--ee--Ee---------cccceEEEEeccccceEEEEEEEccCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP-KS-INYWVRDQG--DM--VI---------SSERYEVESISRSIFDFKMRLTIKKITK 72 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~-~~-~~~w~~~~~--~~--~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 72 (96)
+..+.+..|+.+.|.|.+.+.+ .+ .+.|+++.. .. .. ...++..... .....|.|.+++.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~L~I~~v~~ 100 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKS-----GTSASLAISGLRS 100 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEE-----TTEEEEEEESCCS
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEec-----CCeEEEEECCCCH
Confidence 4456688999999999998754 34 699987531 11 10 0123332210 0235799999999
Q ss_pred CCCeeEEEEEecCCC
Q psy4613 73 YDLGSYKCIAKNSLG 87 (96)
Q Consensus 73 ~d~g~y~c~~~~~~g 87 (96)
.|.|.|.|.+.+..+
T Consensus 101 ~D~G~Y~C~~~~~~~ 115 (234)
T 2j6e_L 101 EDEADYYCATWDDSL 115 (234)
T ss_dssp TTCSEEEEEEEETTT
T ss_pred HHCEEEEEEEEcCCc
Confidence 999999999998766
No 406
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Probab=98.98 E-value=6.7e-09 Score=49.63 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=49.6
Q ss_pred ecCceeeecCCCcEEEEEEeee-------cccceeEEeeccce-----eEec-----------ccceEEEEeccccceEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEA-------YPKSINYWVRDQGD-----MVIS-----------SERYEVESISRSIFDFK 62 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~-------~~~~~~~w~~~~~~-----~~~~-----------~~~~~~~~~~~~~~~~~ 62 (96)
..+..+.+..|+.+.|.|.+.. .....+.|++.... +... ..|+.+..... ...
T Consensus 11 q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~---~~~ 87 (132)
T 1nko_A 11 TMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQ---TKN 87 (132)
T ss_dssp EECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGG---GTB
T ss_pred eCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCC---CCc
Confidence 3456678999999999999873 34568999986431 1111 12222211100 012
Q ss_pred EEEEEccCCCCCCeeEEEEEecC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..|.|.+++..|+|.|.|.+.+.
T Consensus 88 ~sL~I~~v~~~DsG~Y~C~v~~~ 110 (132)
T 1nko_A 88 CTLSIRDARMSDAGRYFFRMEKG 110 (132)
T ss_dssp CCEEECSCCGGGCEEEEEEEEET
T ss_pred eEEEEcccCcccCeeEEEEEEcC
Confidence 47999999999999999998764
No 407
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=98.98 E-value=1.3e-08 Score=53.75 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=51.3
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--cee--Ee-cc------------cceEEEEeccccceEEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GDM--VI-SS------------ERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~~--~~-~~------------~~~~~~~~~~~~~~~~~~l~ 66 (96)
+..++..+.+..|+.+.|.|.+. .+.+.+.|++.. ... .. .. .++.+... ......|.
T Consensus 29 v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~ 103 (268)
T 3pl6_D 29 VSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP----EGSVSTLK 103 (268)
T ss_dssp CBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT----TSSSEEEE
T ss_pred eEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec----CCCEEEEE
Confidence 33455667889999999999976 477789998831 111 00 00 23332211 01246799
Q ss_pred EccCCCCCCeeEEEEEec
Q psy4613 67 IKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~ 84 (96)
|.+++..|.|.|.|.+.+
T Consensus 104 I~~v~~~D~G~Y~C~~~~ 121 (268)
T 3pl6_D 104 IQRTERGDSAVYLCATSA 121 (268)
T ss_dssp ECSCCGGGCEEEEEEEES
T ss_pred ECCCCcccCEEEEEEEec
Confidence 999999999999999987
No 408
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=98.98 E-value=8.6e-08 Score=51.77 Aligned_cols=83 Identities=13% Similarity=0.167 Sum_probs=55.3
Q ss_pred ceeeecCC---CcEEEEEE-eeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 9 QLVGAPID---TDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 9 ~~~~~~~g---~~~~l~c~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
..+.+..| ..+.|.|. ..+.|.+.+.|+++....... ...............|.|..+...|.|.|.|.+.+
T Consensus 140 ~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 215 (331)
T 3u83_A 140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY----QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNY 215 (331)
T ss_dssp SCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEE----EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred CceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCcccc----ceeECCCCcEEEEEEEEEEeccccCCCEEEEEEec
Confidence 44556667 77999998 788899999999853221100 00011111222346789999999999999999999
Q ss_pred CCCceEEEEEe
Q psy4613 85 SLGEVESSIRL 95 (96)
Q Consensus 85 ~~g~~~~~~~l 95 (96)
..|.....+.|
T Consensus 216 ~~~~~~~~~~l 226 (331)
T 3u83_A 216 HMDRFKESLTL 226 (331)
T ss_dssp TTEEEEEEEEC
T ss_pred CCCcceeeEEE
Confidence 88776555443
No 409
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=98.98 E-value=2.4e-08 Score=52.34 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=52.0
Q ss_pred ecCceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRL 65 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l 65 (96)
..+..+.+..|+.+.|.|.+.+.+ .+.+.|++.. ... .. ...++....... .....|
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L 82 (253)
T 3uzq_A 6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTS---SNTAYL 82 (253)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEE
T ss_pred ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecC---CCeEEE
Confidence 344567789999999999988743 6789998832 111 10 012333222110 013569
Q ss_pred EEccCCCCCCeeEEEEEecCCC
Q psy4613 66 TIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 66 ~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.+++..|+|.|.|.+.+..+
T Consensus 83 ~I~~v~~~DsG~Y~C~~~~~~~ 104 (253)
T 3uzq_A 83 HLSSLTSGDTAVYYCSRGWEGF 104 (253)
T ss_dssp EECSCCGGGCEEEEEEECSSSC
T ss_pred EeCCCCcccCEEEEEEEeeCCc
Confidence 9999999999999999988543
No 410
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=98.98 E-value=7.2e-09 Score=53.86 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=51.9
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE----------e--cccceEEEEeccccceEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV----------I--SSERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~----------~--~~~~~~~~~~~~~~~~~~~~l~ 66 (96)
.+..++..+.+..|+.+.|.|.+.+ +.+.+.|++... ... . ...++...... .....|.
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~sL~ 78 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD----DYHSEMN 78 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECT----TSCEEEE
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCC----CCEEEEE
Confidence 3455667788999999999999876 777999998321 000 0 01233322210 1235799
Q ss_pred EccCCCCCCeeEEEEEe
Q psy4613 67 IKKITKYDLGSYKCIAK 83 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~ 83 (96)
|.+++..|.|.|.|.+.
T Consensus 79 I~~v~~~D~G~Y~C~~~ 95 (240)
T 3q5y_A 79 MSALELEDSAMYFCASS 95 (240)
T ss_dssp ECSCCGGGCEEEEEEEE
T ss_pred ECcCChhHCEEEEEEEc
Confidence 99999999999999997
No 411
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=98.97 E-value=1.3e-09 Score=54.30 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=50.3
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEecc--ccc---eEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISR--SIF---DFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
.+.+..|++++|.|.+. .+.+.+.|++.+..+...... ....... ... .....|.|.+++..|+|.|.|.+.+
T Consensus 4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~-~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n 81 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENS-EFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81 (171)
T ss_dssp EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETT-EEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCC-CcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence 45678999999999984 478899999876533211100 0000000 000 0125699999999999999999988
Q ss_pred CCC
Q psy4613 85 SLG 87 (96)
Q Consensus 85 ~~g 87 (96)
..|
T Consensus 82 ~~~ 84 (171)
T 1ccz_A 82 ITD 84 (171)
T ss_dssp CCS
T ss_pred CCC
Confidence 777
No 412
>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1
Probab=98.97 E-value=6.1e-08 Score=45.68 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=51.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e-c-----------ccceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I-S-----------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~-~-----------~~~~~~~~~~~~~~~~~~~ 64 (96)
+..++ .+.+..|++++|.|.+.+.+ ...+.|++... ..+ . . ..++.+.... ......
T Consensus 4 l~q~~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~ 79 (121)
T 1kxv_C 4 LVESG-GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGN---AKNTAY 79 (121)
T ss_dssp EEEEC-CEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECS---STTEEE
T ss_pred EEcCC-CEEEcCCCcEEEEEEecCCCcCceEEEEEEeCCCCCCEEEEEEeCCCCeeeCcccCCcEEEEEEC---CCCEEE
Confidence 44444 56789999999999987543 46799987521 111 1 0 1122222110 012467
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++.+|+|.|.|.+.+.
T Consensus 80 L~I~~~~~~Dsg~Y~C~~~~~ 100 (121)
T 1kxv_C 80 LQMDSLKPDDTAMYYCKPSLR 100 (121)
T ss_dssp EEECSCCGGGCEEEEEEEEES
T ss_pred EEECCCCHHHCEEEEEEEEec
Confidence 999999999999999998864
No 413
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=98.97 E-value=1.9e-08 Score=52.23 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=49.2
Q ss_pred CceeeecCCCcEEEEEEeeeccc--ceeEEeecc--ceeE-----e-----------cccceEEEEeccccceEEEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GDMV-----I-----------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+....+..|+.+.|.|.+.+.+. +.+.|+++. .... . ...++...... ......|.|
T Consensus 126 ~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I 202 (240)
T 1moe_A 126 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT---SSNTAYLQL 202 (240)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEET---TTTEEEEEE
T ss_pred CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcc---cCCEEEEEE
Confidence 34456788999999999998763 589999852 1110 0 01223222110 012357999
Q ss_pred ccCCCCCCeeEEEEEec
Q psy4613 68 KKITKYDLGSYKCIAKN 84 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~ 84 (96)
.+++..|+|.|.|.+..
T Consensus 203 ~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 203 TSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp CSCCGGGCEEEEEEECS
T ss_pred CcCCHHHCEEEEEEEEe
Confidence 99999999999999984
No 414
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=98.97 E-value=9.8e-08 Score=45.38 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=52.1
Q ss_pred EEecCceeeecCCCcEEEEEEeeec---ccceeEEeeccc----eeE-e-c-----------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQG----DMV-I-S-----------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~---~~~~~~w~~~~~----~~~-~-~-----------~~~~~~~~~~~~~~~~~~ 63 (96)
+..+ ..+.+..|++++|.|.+... ....+.|++... ..+ . . ..++.+.... .....
T Consensus 4 ~~qp-~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~---~~~~~ 79 (126)
T 2h32_A 4 LHQP-PAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDV---ARNRG 79 (126)
T ss_dssp EECC-SEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEG---GGTEE
T ss_pred eECC-CCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeC---CCCeE
Confidence 4444 46778999999999998764 245799987531 111 1 0 1122222111 11235
Q ss_pred EEEEccCCCCCCeeEEEEEecCCC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.|.+++..|+|.|.|.+.+..+
T Consensus 80 sL~I~~~~~~DsG~Y~C~~~~~~~ 103 (126)
T 2h32_A 80 YLSISELQPEDEAMYYCAMGARSS 103 (126)
T ss_dssp EEEECSCCGGGCEEEEEEEECSCC
T ss_pred EEEECCCChhHCEEEEEEEEcCCC
Confidence 799999999999999999987654
No 415
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=98.97 E-value=4.7e-10 Score=58.76 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=47.8
Q ss_pred CCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEE--EEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEV--ESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.|+.+.|.|.+.+. |.+ .+.|++++..+. ....... .......+.....|.|..+...|.|.|.|.+.+....
T Consensus 164 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~-~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 164 TSGGASVVCFLNNFYPKDINVKWKIDGSERQ-NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp HHTEEEEEEEEEEEBSSCCEEEEEETTEEEC-SSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred CCCcEEEEEEEeeEeCCCcEEEEEECCeecC-CCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 57899999999884 443 699999865442 1100000 0011112224567899999889999999999987554
No 416
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=98.97 E-value=3.6e-08 Score=52.15 Aligned_cols=72 Identities=14% Similarity=0.258 Sum_probs=49.2
Q ss_pred eeecCCCcEEEEEEeeeccc--ceeEEeecc--ce--eEe---c-----------ccceEEEEeccccceEEEEEEEccC
Q psy4613 11 VGAPIDTDVTLECYVEAYPK--SINYWVRDQ--GD--MVI---S-----------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~--~~~~w~~~~--~~--~~~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
..+..|+.+.|.|.+.+.+. +.+.|+++. .. .+. . ..++.+.... ......|.|.++
T Consensus 148 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v 224 (264)
T 2gjj_A 148 EVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDT---SSSTAFMQLNSL 224 (264)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEET---TTTEEEEEECSC
T ss_pred EEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcC---CCCEEEEEECcC
Confidence 35789999999999988763 789999863 11 111 0 1223222110 012468999999
Q ss_pred CCCCCeeEEEEEecC
Q psy4613 71 TKYDLGSYKCIAKNS 85 (96)
Q Consensus 71 ~~~d~g~y~c~~~~~ 85 (96)
+..|+|.|.|.+.+.
T Consensus 225 ~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 225 TSEDSADYYCVRSGN 239 (264)
T ss_dssp CGGGCEEEEEEEECS
T ss_pred CcccCEEEEEEEecC
Confidence 999999999999984
No 417
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=98.97 E-value=5.3e-08 Score=51.56 Aligned_cols=76 Identities=12% Similarity=0.220 Sum_probs=52.1
Q ss_pred CceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--c------------ccceEEEEeccccceEEEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--S------------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--~------------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+..+.+..|+.+.|.|.+.+.+ .+.+.|++.. ..+ +. . ..++.+..... .....|.|
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I 89 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKS---SSTVYIQL 89 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG---GTEEEEEE
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCC---CCEEEEEE
Confidence 4466789999999999998765 5789999763 111 10 0 12333322110 02367999
Q ss_pred ccCCCCCCeeEEEEEecCC
Q psy4613 68 KKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~ 86 (96)
.+++..|+|.|.|.+.+..
T Consensus 90 ~~v~~~DsG~Y~C~~~~~~ 108 (261)
T 2xqy_G 90 SSLTSEDSAVYYCGRLGYV 108 (261)
T ss_dssp CSCCGGGCEEEEEEEECTT
T ss_pred cCCCcccCeEEEEEEecCC
Confidence 9999999999999998853
No 418
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=98.97 E-value=2.8e-08 Score=51.43 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=51.4
Q ss_pred CceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--c------------ccceEEEEeccccceEEEEEEE
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--S------------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--~------------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+..+.+..|+.+.|.|.+.+.+ .+.+.|++.. ... +. . ..++.+..... .....|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I 83 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTS---SSTAYMQL 83 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETT---TTEEEEEE
T ss_pred CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCC---CCeEEEEE
Confidence 3456789999999999998765 6789999853 111 10 0 12333221110 12467999
Q ss_pred ccCCCCCCeeEEEEEecC
Q psy4613 68 KKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~ 85 (96)
.+++..|.|.|.|.+.+.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~ 101 (227)
T 1mju_H 84 SSLTSDDSAVYYCANKLG 101 (227)
T ss_dssp CSCCGGGCEEEEEEEEET
T ss_pred CCCCcccCEEEEEEECCC
Confidence 999999999999999875
No 419
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=98.97 E-value=2e-08 Score=52.69 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=49.4
Q ss_pred eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee--------------cccceEEEEeccccceEEEEEEEcc
Q psy4613 10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI--------------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
...+..|+.+.|.|.+.+.+ .+.+.|++.. ... .. ...++.+..... .....|.|.+
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~ 87 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKS---SSTAYLELRS 87 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG---GTEEEEEECS
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecC---CCEEEEEECC
Confidence 45589999999999988755 6789998742 111 10 012333222110 1235699999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|+|.|.|.+.+.
T Consensus 88 v~~~DsG~Y~C~~~~~ 103 (256)
T 3umt_A 88 LTSEDSAVYYCARDDR 103 (256)
T ss_dssp CCGGGCEEEEEEECCS
T ss_pred CCcccCEEEEEEEccC
Confidence 9999999999999886
No 420
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=98.96 E-value=6e-08 Score=45.60 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=51.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|++++|.|.+.+.. ...+.|++... ..+. . ..++...... .....
T Consensus 4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (120)
T 3b9v_A 4 LVESG-GGLVQPGGSLRLSCAASGFNIKDTYIGWVRRAPGKGEEWVASIYPTNGYTRYADSVKGRFTISADT---SKNTA 79 (120)
T ss_dssp EEEEC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECTTTTTTEEEEEEG---GGTEE
T ss_pred EECCC-CEEEeCCccEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCeEEEEEcC---CCCEE
Confidence 44443 56789999999999987533 56899987531 1111 0 1233332211 01235
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 80 ~L~I~~~~~~Dsg~Y~C~~~~~ 101 (120)
T 3b9v_A 80 YLQMNSLRAEDTAVYYCARWGG 101 (120)
T ss_dssp EEEECSCCGGGCEEEEEEEECT
T ss_pred EEEECCCCHHHCEEEEEEEEcC
Confidence 7999999999999999998865
No 421
>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B
Probab=98.96 E-value=7.1e-08 Score=45.36 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=51.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|++++|.|.+.+.. ...+.|++... ..+. . ..++...... .....
T Consensus 4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (120)
T 1n4x_H 4 LQQSG-PELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDT---STSTA 79 (120)
T ss_dssp EEECC-CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEEG---GGTEE
T ss_pred EECCC-CEEEcCCCeEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeC---CCCEE
Confidence 44444 46789999999999987533 45799987531 1111 0 1233332211 01246
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++..|+|.|.|.+.+.
T Consensus 80 ~L~I~~~~~~DsG~Y~C~~~~~ 101 (120)
T 1n4x_H 80 FLQINNLKNEDTATYFCVRDRH 101 (120)
T ss_dssp EEEECSCCGGGCEEEEEEEESS
T ss_pred EEEECCCCHHHCEEEEEEEEcc
Confidence 7999999999999999999865
No 422
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=98.96 E-value=1.4e-08 Score=52.56 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=48.9
Q ss_pred ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+. |.+ .+.|++++...... ...... . ...+...+.|.|......| |.|.|.+.|..+...
T Consensus 142 ~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~-~~~~~~-~-~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~ 217 (228)
T 3bae_H 142 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH-TFPAVL-Q-SDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK 217 (228)
T ss_dssp --CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEE-EEEEEE-E-TTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred ccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCce-EcCcee-C-CCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence 4578999999999886 777 89999875432100 000111 1 1222245678888887766 999999999887654
Q ss_pred EE
Q psy4613 91 SS 92 (96)
Q Consensus 91 ~~ 92 (96)
..
T Consensus 218 ~~ 219 (228)
T 3bae_H 218 VD 219 (228)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 423
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Probab=98.96 E-value=6.8e-09 Score=52.81 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=54.0
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----e-eEec--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----D-MVIS--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~-~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|+.+.|.|.+.+.....+.|++... . +... ..++...... ......|.|.+
T Consensus 3 ~v~Q~p~~v~v~~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~ 79 (194)
T 1lp9_E 3 SVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHK---SSSSFHLQKSS 79 (194)
T ss_dssp EEEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBG---GGTBCCEEESS
T ss_pred ccEecCCEEEEecCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecC---CCCEEEEEEcc
Confidence 45666777889999999999998876667899987531 1 1111 1222221100 00125799999
Q ss_pred CCCCCCeeEEEEEec
Q psy4613 70 ITKYDLGSYKCIAKN 84 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~ 84 (96)
++..|+|.|.|.+.+
T Consensus 80 ~~~~Dsg~Y~C~~~~ 94 (194)
T 1lp9_E 80 AQLSDSALYYCALFL 94 (194)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred cCcccCeeEEEEEec
Confidence 999999999999876
No 424
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...
Probab=98.96 E-value=2.2e-08 Score=52.17 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=53.4
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-ec--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-IS--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|+++.|.|.+.+.....+.|++... ..+ .. ..++...... ......|.|.+
T Consensus 3 ~v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~ 79 (229)
T 2q86_A 3 QVEQSPQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDK---DAKHSTLHITA 79 (229)
T ss_dssp SEEEECSEEEEETTCCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEET---TTTEEEEEECS
T ss_pred ceEECCCEEEEecCCCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcC---CCCEEEEEEcc
Confidence 45566677889999999999998776666899997531 111 11 1222221110 01235799999
Q ss_pred CCCCCCeeEEEEEec
Q psy4613 70 ITKYDLGSYKCIAKN 84 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~ 84 (96)
++..|+|.|.|.+.+
T Consensus 80 ~~~~Dsg~Y~C~~~~ 94 (229)
T 2q86_A 80 TLLDDTATYFCVVGD 94 (229)
T ss_dssp CCGGGCEEEEEEESC
T ss_pred cCcccCccEEEEEEe
Confidence 999999999999865
No 425
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=98.96 E-value=2.4e-09 Score=60.08 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=52.0
Q ss_pred ecCCCcEEEEEEeeecc----cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 13 APIDTDVTLECYVEAYP----KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
+..|+.+.|.|.+.+.+ .+.+.|++++..+...... .........+.....|.|..+...|.|.|.|.+.|..+.
T Consensus 252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 330 (444)
T 1igt_B 252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQ-THREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLP 330 (444)
T ss_dssp HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCB-CCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCS
T ss_pred eecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccc-cceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCC
Confidence 47799999999999873 3589999987554211111 001111111224567999999999999999999998775
Q ss_pred e
Q psy4613 89 V 89 (96)
Q Consensus 89 ~ 89 (96)
.
T Consensus 331 ~ 331 (444)
T 1igt_B 331 A 331 (444)
T ss_dssp S
T ss_pred C
Confidence 4
No 426
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=98.96 E-value=1.5e-08 Score=51.64 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=50.4
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeecc--ceeE---e------------cccceEEEEeccccceEEEEEEEcc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDMV---I------------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
..+.+..|+.+.|.|.+.+.+ .+.+.|++.. .... . ...++.+..... .....|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~ 84 (210)
T 3d9a_H 8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTS---KNQYYLDLNS 84 (210)
T ss_dssp SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGG---GTEEEEEECS
T ss_pred CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCC---CCEEEEEECC
Confidence 445789999999999998864 4789998752 1111 0 112333322110 0135899999
Q ss_pred CCCCCCeeEEEEEecC
Q psy4613 70 ITKYDLGSYKCIAKNS 85 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~ 85 (96)
++..|.|.|.|.+.+.
T Consensus 85 v~~~D~G~Y~C~~~~~ 100 (210)
T 3d9a_H 85 VTTEDTATYYCANWDG 100 (210)
T ss_dssp CCGGGCEEEEEEETTS
T ss_pred CCcccCEEEEEEEecC
Confidence 9999999999999875
No 427
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}
Probab=98.96 E-value=6.8e-09 Score=48.49 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=48.7
Q ss_pred CceeeecCCCcEEEEEEeeec--ccceeEEeecc-------ceeEec---------ccceEEEEeccccceEEEEEEEcc
Q psy4613 8 NQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQ-------GDMVIS---------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~-------~~~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
+..+.+..|++++|.|.+... ....+.|++.. ..+... ..++.+.. +.......|.|.+
T Consensus 4 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~ 80 (115)
T 2or7_A 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKG---NISEGNVSLTIEN 80 (115)
T ss_dssp --CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCS---CGGGTBCCEEESS
T ss_pred ccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEec---CccCCeEEEEEcc
Confidence 455678999999999998653 24578999874 112111 11221110 0001235699999
Q ss_pred CCCCCCeeEEEEEecCCC
Q psy4613 70 ITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~g 87 (96)
++..|+|.|.|.+.....
T Consensus 81 v~~~DsG~Y~C~v~~~~~ 98 (115)
T 2or7_A 81 TVVGDGGPYCCVVEIPGA 98 (115)
T ss_dssp CCGGGCEEEEEEECCTTS
T ss_pred CCHHHCEEEEEEEECCCc
Confidence 999999999999986543
No 428
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=98.95 E-value=6e-09 Score=54.78 Aligned_cols=79 Identities=25% Similarity=0.378 Sum_probs=51.9
Q ss_pred eEEecCceeeecCCCcEEEEEEeeec-ccceeEEeeccc--ee--Eec---------ccceEEEEeccccceEEEEEEEc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQG--DM--VIS---------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~-~~~~~~w~~~~~--~~--~~~---------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
.+...+..+.+..|+++.|.|.+.+. +.+.+.|++... .. ... ..++.+.... ......|.|.
T Consensus 138 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~ 214 (259)
T 3omz_A 138 KVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKK---AAKSVALTIS 214 (259)
T ss_dssp EEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBG---GGTBCCEEES
T ss_pred eeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcC---cCCEEEEEEC
Confidence 44555566778899999999988774 678999998532 11 100 1222211100 0012459999
Q ss_pred cCCCCCCeeEEEEEec
Q psy4613 69 KITKYDLGSYKCIAKN 84 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~ 84 (96)
+++..|+|.|.|.+..
T Consensus 215 ~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 215 ALQLEDSAKYFCALGE 230 (259)
T ss_dssp SCCGGGCSEEEEEEES
T ss_pred CCChhHCEEEEEEEeC
Confidence 9999999999999974
No 429
>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B
Probab=98.95 E-value=7.5e-08 Score=45.36 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=50.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|++++|.|.+.+.+ ...+.|++... ..+. . ..++...... .....
T Consensus 4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (121)
T 1j05_H 4 LQQSG-AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT---SSNTA 79 (121)
T ss_dssp EEECC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEEG---GGTEE
T ss_pred EECCC-CEEEeCCCcEEEEEEecCcccCCcEEEEEEECCCCCcEEEEEEecCCCceeeCcccCCcEEEEEcC---CCCEE
Confidence 44444 46789999999999987543 45799987531 1111 0 1133322111 01245
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 80 ~L~I~~~~~~Dsg~Y~C~~~~~ 101 (121)
T 1j05_H 80 YLQLTSLTSEDTAVYYCAPFGY 101 (121)
T ss_dssp EEEECSCCGGGCEEEEEEEEBT
T ss_pred EEEECCCCHHHCEEEEEEEEcC
Confidence 7999999999999999999875
No 430
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=98.95 E-value=3.2e-09 Score=56.31 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=51.5
Q ss_pred cCceeeecCCCcEEEEEEeeecccce-eEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKSI-NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
.+....+..|..+.|.|.+.+.+.+. +.|++.+........++.... ...|.|.++...|.|.|.|.+.+
T Consensus 95 ~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~~ 165 (289)
T 3ejj_X 95 LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP--------WRGFIIRKAKVLDSNTYVCKTMV 165 (289)
T ss_dssp SCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET--------TTEEEESSCCGGGCEEEEEEEEE
T ss_pred ccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC--------CCCEEEeecccccCEEEEEEEEe
Confidence 34566788899999999999877665 999875555443334433321 24589999999999999999983
No 431
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=98.95 E-value=1.2e-08 Score=51.65 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=43.5
Q ss_pred CCC-cEEEEEEeeec-ccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCC-CCCeeEEEEEecCCCceEE
Q psy4613 15 IDT-DVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK-YDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 15 ~g~-~~~l~c~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~c~~~~~~g~~~~ 91 (96)
.|. .+.|.|.+.+. +.+.+.|++++..+. .. ..|.|..... .|.|.|.|.+.|..|....
T Consensus 122 ~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~-~~----------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~ 184 (193)
T 2if7_A 122 NMTCELHLTCSVEDADDNVSFRWEALGNTLS-SQ----------------PNLTVSWDPRISSEQDYTCIAENAVSNLSF 184 (193)
T ss_dssp CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-SS----------------SEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred CCCceEEEEEEEecCCCceEEEEEeCCEEcC-CC----------------CeEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence 344 79999999985 478999999864332 11 1234433334 3899999999999987765
Q ss_pred EEE
Q psy4613 92 SIR 94 (96)
Q Consensus 92 ~~~ 94 (96)
.+.
T Consensus 185 ~~~ 187 (193)
T 2if7_A 185 SVS 187 (193)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 432
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=98.95 E-value=2.1e-08 Score=51.37 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=50.5
Q ss_pred CceeeecCCCcEEEEEEeeec--ccceeEEeeccc--e--eEe-------------cccceEEEEeccccceEEEEEEEc
Q psy4613 8 NQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG--D--MVI-------------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~--~--~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
+..+.+..|+.+.|.|.+.+. +.+.+.|++... . ... ...++.+.. ......|.|.
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~ 80 (215)
T 3nl4_H 6 SGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK-----TSTTVDLKIT 80 (215)
T ss_dssp ECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE-----CSSEEEEEES
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe-----eCCEEEEEEC
Confidence 345678899999999999763 356899987421 1 110 112333222 1134579999
Q ss_pred cCCCCCCeeEEEEEecCCC
Q psy4613 69 KITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g 87 (96)
+++..|+|.|.|.+.+..+
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~ 99 (215)
T 3nl4_H 81 SPTTEDTATYFCVRKYGSE 99 (215)
T ss_dssp SCCGGGCEEEEEEEECSSS
T ss_pred CCCcccCEEEEEEEecCCC
Confidence 9999999999999988644
No 433
>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A
Probab=98.95 E-value=1e-07 Score=45.20 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=50.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c-----------ccceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S-----------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~-----------~~~~~~~~~~~~~~~~~~~ 64 (96)
+..| ..+.+..|++++|.|.+.+.. ...+.|++... ..+. . ..++.+.... ......
T Consensus 4 l~qp-~~~~~~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~ 79 (124)
T 1yc7_A 4 LVES-GGGSVQAGGSLRLSCAVSGSTYSPCTTGWYRQAPGKEREWVSSISSPGTIYYQDSVKGRFTISRDN---AKNTVY 79 (124)
T ss_dssp EEEE-CCEEECTTCCEEEEEEEESCCSSCEEEEEEEECTTSCEEEEEEECSTTCEEECGGGTTTEEEEEET---TTTEEE
T ss_pred EECC-CCEEEecCCCEEEEEEEeCCCcCCCEEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEEC---CCCEEE
Confidence 4444 356789999999999987533 45799987531 1111 1 1133322211 012467
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++.+|+|.|.|.+.+.
T Consensus 80 L~I~~~~~~Dsg~Y~C~~~~~ 100 (124)
T 1yc7_A 80 LQMNSLQREDTGMYYCQIQCG 100 (124)
T ss_dssp EEECSCCGGGCEEEEEEEEEC
T ss_pred EEECCCCHHHCEEEEEEEEeC
Confidence 999999999999999998865
No 434
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Probab=98.95 E-value=2.2e-08 Score=51.24 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=53.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-ec--------ccceEEEEeccccceEEEEEEEccC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-IS--------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~--------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
+..++..+.+..|+++.|.|.+.+.....+.|++... ..+ .. ..++...... ......|.|.++
T Consensus 3 v~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~v 79 (203)
T 2bnu_A 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDK---SSGRSTLYIAAS 79 (203)
T ss_dssp EEEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEET---TTTEEEEEESSC
T ss_pred cEEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcC---CCCEEEEEEeeC
Confidence 4556677889999999999998765556899987531 111 10 1233222110 012467999999
Q ss_pred CCCCCeeEEEEEec
Q psy4613 71 TKYDLGSYKCIAKN 84 (96)
Q Consensus 71 ~~~d~g~y~c~~~~ 84 (96)
+..|.|.|.|.+.+
T Consensus 80 ~~~Dsg~Y~C~~~~ 93 (203)
T 2bnu_A 80 QPGDSATYLCAVRP 93 (203)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred CcccCeEEEEEEEc
Confidence 99999999999876
No 435
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=98.95 E-value=3.8e-08 Score=51.25 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=54.9
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEec---------ccceEEEEeccccceEEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVIS---------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
.+...+..+.+..|+++.|.|.+.+.+ ...+.|++... ..+.. ..++...... ......|.|
T Consensus 3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I 79 (229)
T 1hxm_A 3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDI---AKNLAVLKI 79 (229)
T ss_dssp CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEG---GGTEEEEEE
T ss_pred ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcC---CCCEEEEEE
Confidence 355667778899999999999988543 45799987531 12111 1334333211 012357999
Q ss_pred ccCCCCCCeeEEEEEecC
Q psy4613 68 KKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~ 85 (96)
.+++..|.|.|.|.+.+.
T Consensus 80 ~~v~~~Dsg~Y~C~~~~~ 97 (229)
T 1hxm_A 80 LAPSERDEGSYYCACDTL 97 (229)
T ss_dssp SSCCGGGCEEEEEEEECC
T ss_pred CcCCHhHCeEEEEEEecC
Confidence 999999999999999875
No 436
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=98.95 E-value=1.2e-07 Score=44.39 Aligned_cols=78 Identities=13% Similarity=0.264 Sum_probs=50.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e-c-----------ccceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I-S-----------SERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~-~-----------~~~~~~~~~~~~~~~~~~~ 64 (96)
+..++. +.+..|++++|.|.+.+.+ ...+.|++... ..+ . . ..++...... ......
T Consensus 4 v~q~~~-~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~ 79 (116)
T 1a2y_B 4 LQESGP-GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDN---SKSQVF 79 (116)
T ss_dssp EEEECC-SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEG---GGTEEE
T ss_pred EEcCCC-EEEeCCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEEC---CCCEEE
Confidence 444443 6789999999999987643 46899987531 111 1 0 1233322211 012467
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++..|+|.|.|.+.+.
T Consensus 80 L~I~~~~~~Dsg~Y~C~~~~~ 100 (116)
T 1a2y_B 80 LKMNSLHTDDTARYYCARERD 100 (116)
T ss_dssp EEECSCCGGGCEEEEEEEESS
T ss_pred EEECCCCHHHCEEEEEEEecC
Confidence 999999999999999999865
No 437
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=98.95 E-value=1.3e-07 Score=44.86 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=49.9
Q ss_pred CceeeecCCCcEEEEEEeeeccc-ceeEEeeccc----ee-Eec--------ccceEEEEeccccceEEEEEEEccCCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQG----DM-VIS--------SERYEVESISRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~----~~-~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 73 (96)
+..+.+.+|++++|.|....... ..+.|++... .. +.. ..++.+.... ......|.|.+++..
T Consensus 9 p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~l~~~ 85 (124)
T 2nms_A 9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQ---KNRTFTVTMEDLMKT 85 (124)
T ss_dssp CSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEET---TTTEEEEEECSCCGG
T ss_pred ccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcC---cCCEEEEEEeCCCHH
Confidence 35677899999999999876433 3688998642 11 111 1222222111 112467999999999
Q ss_pred CCeeEEEEEecCC
Q psy4613 74 DLGSYKCIAKNSL 86 (96)
Q Consensus 74 d~g~y~c~~~~~~ 86 (96)
|+|.|.|.+....
T Consensus 86 Dsg~Y~C~~~~~~ 98 (124)
T 2nms_A 86 DADTYWCGIEKTG 98 (124)
T ss_dssp GCEEEEEEEEETT
T ss_pred HCEEEEEEEEcCC
Confidence 9999999988653
No 438
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=98.94 E-value=3e-09 Score=54.01 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=48.7
Q ss_pred eeeecCCCcEEEEEEeeecccceeEEeeccceeE-----e-cccceEEEEecc--cc--ceEEEEEEEccCCCCCCeeEE
Q psy4613 10 LVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMV-----I-SSERYEVESISR--SI--FDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~-----~-~~~~~~~~~~~~--~~--~~~~~~l~i~~~~~~d~g~y~ 79 (96)
...+..|+.+.|.|...+.+.+.+.|++...... . ............ .. ......|.|.+++..|.|.|.
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~ 87 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYT 87 (208)
T ss_dssp SSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEE
T ss_pred cceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEE
Confidence 3567899999999998887888999997632110 0 000000000000 00 001136999999999999999
Q ss_pred EEEecCC
Q psy4613 80 CIAKNSL 86 (96)
Q Consensus 80 c~~~~~~ 86 (96)
|.+.+..
T Consensus 88 C~~~~~~ 94 (208)
T 3r4d_A 88 LDMTDEN 94 (208)
T ss_dssp EEEECSS
T ss_pred EEEEccc
Confidence 9999874
No 439
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=98.94 E-value=1e-09 Score=59.09 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+. ..+..|+.+.|.|.+.+. .+.+.|++++..+.... ... .....|.|.+++..|.|.|.|
T Consensus 24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~-~~~---------~~~~~L~I~~v~~~D~G~Y~C 91 (316)
T 3vh8_G 24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF-HGR---------IFQESFNMSPVTTAHAGNYTC 91 (316)
T ss_dssp CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH-HHC---------CBSSCEEECSCCGGGCEEEEE
T ss_pred CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee-cCC---------cceEEEEECCCCcccCeEEEE
Confidence 356665555 457799999999999886 67889999875532110 000 012568899999999999999
Q ss_pred EEec
Q psy4613 81 IAKN 84 (96)
Q Consensus 81 ~~~~ 84 (96)
.+.+
T Consensus 92 ~a~~ 95 (316)
T 3vh8_G 92 RGSH 95 (316)
T ss_dssp EEBC
T ss_pred EEEc
Confidence 9875
No 440
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=98.94 E-value=1.9e-08 Score=52.06 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=45.0
Q ss_pred ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+. |.+ .+.|++++..+....... ... . ..+...+.|.|......| |.|.|.+.+..+...
T Consensus 133 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~-~~~-~-g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 208 (227)
T 1mju_H 133 DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQ-S-DLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK 208 (227)
T ss_dssp -----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEE-T-TEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEE
T ss_pred ccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCc-eec-C-CeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcc
Confidence 4568999999999985 666 899998764421100000 000 0 122245678898888877 999999999765443
No 441
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=98.93 E-value=7.4e-08 Score=49.08 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=47.4
Q ss_pred ecCCCcEEEEEEe-eecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 13 APIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 13 ~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
...+....+.|.. .+.|.+.+.|++++...... .. ........+...+.|.|..+...|.|.|.|.+.|..+..
T Consensus 133 ~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~-~~--~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~ 207 (225)
T 4fmk_A 133 IGPQSVAVARCVSTGGRPPARITWISSLGGEAKD-TQ--EPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEE 207 (225)
T ss_dssp CSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE-EE--EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred ecceeeeeeeeeecCCCCCCEEEEEECCccccCC-cc--eEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCe
Confidence 4456666666665 45677788898876544321 00 111111122234679999999999999999999987754
No 442
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=98.93 E-value=4.7e-08 Score=49.83 Aligned_cols=76 Identities=13% Similarity=0.021 Sum_probs=48.6
Q ss_pred eeecCCCcEEEEEEeeeccc---ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 11 VGAPIDTDVTLECYVEAYPK---SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 11 ~~~~~g~~~~l~c~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..+..|+.+.|.|.+.+.++ +.+.|++++..+......... ...........|.+......|.|.|.|.+.|..+
T Consensus 101 ~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~--~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~ 178 (202)
T 1vca_A 101 GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA--DRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID 178 (202)
T ss_dssp SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC--SSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSC
T ss_pred eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccccc--CcCcceEEEEEEEEEeeeccCCCeEEEEEEcccc
Confidence 34678999999999987543 368999987654321100000 0000011345677888888888999999999876
Q ss_pred c
Q psy4613 88 E 88 (96)
Q Consensus 88 ~ 88 (96)
.
T Consensus 179 ~ 179 (202)
T 1vca_A 179 E 179 (202)
T ss_dssp C
T ss_pred C
Confidence 5
No 443
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=98.93 E-value=1.7e-08 Score=52.36 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=53.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccc----eeE-e------------cccceEEEEeccccceEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQG----DMV-I------------SSERYEVESISRSIFDFKMR 64 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~----~~~-~------------~~~~~~~~~~~~~~~~~~~~ 64 (96)
+...+..+.+..|+++.|.|.+.+. +.+.+.|++... ..+ . ...++.+.... . .....
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~--~-~~~~~ 80 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNP--S-ASTSI 80 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECC--T-TTEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcC--C-CCEEE
Confidence 4556677889999999999998874 566899987531 111 1 01222222100 0 02357
Q ss_pred EEEccCCCCCCeeEEEEEecC
Q psy4613 65 LTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 65 l~i~~~~~~d~g~y~c~~~~~ 85 (96)
|.|.+++..|+|.|.|.+.+.
T Consensus 81 L~I~~v~~~D~G~Y~C~~~~~ 101 (230)
T 1ypz_F 81 LTIYSLEEEDEAIYYCSYGEG 101 (230)
T ss_dssp EEECSCCGGGCSEEEEEECCT
T ss_pred EEECcCChhhCEEEEEEEECC
Confidence 999999999999999999874
No 444
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=98.93 E-value=5e-09 Score=53.51 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 15 IDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 15 ~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|..+.|.|.+.+. |. ..+.|++++..+... ............+...+.|.+......|.|.|.|.+.|...
T Consensus 123 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~-~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 123 AKDKVSLTCMITDFFPEDITVEWESNGQPAENY-KNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp SSSEEEEEEEEEEEBSSCCEEEEEETTEECSCE-EECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred cCCceEEEEEEeeEECCCCEEEEEECCEeccCc-ccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 48899999999985 44 389999987644211 11111111222333455677766666678999999999754
No 445
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=98.93 E-value=1.9e-08 Score=51.68 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=50.3
Q ss_pred eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--E-e---------------cccceEEEEeccccceEEEEEEE
Q psy4613 10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--V-I---------------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~-~---------------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
.+.+..|+.+.|.|.+.+.+ .+.+.|++.. ... . . ...++.+..... .....|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I 85 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS---QSILYLQM 85 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT---TTEEEEEE
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECC---CCeEEEEE
Confidence 45688999999999998755 6789998753 111 1 0 012333322110 02357999
Q ss_pred ccCCCCCCeeEEEEEecCC
Q psy4613 68 KKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~ 86 (96)
.+++..|.|.|.|.+.+..
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~ 104 (222)
T 1q9r_B 86 NTLRAEDSATYYCARDHDG 104 (222)
T ss_dssp CSCCGGGCEEEEEEECCCS
T ss_pred CcCCcccCeEEEEEEeccC
Confidence 9999999999999998864
No 446
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=98.93 E-value=6.5e-08 Score=45.28 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=51.0
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--e--eE-e-c------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--D--MV-I-S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~--~~-~-~------------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|++++|.|.+.+.. ...+.|++... . .+ . . ..++...... .....
T Consensus 4 v~qp~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (117)
T 2yc1_A 4 LVESG-GGLVQPGGSLRLSCTGSGFTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADSVKGRFTISRDD---AKKTL 79 (117)
T ss_dssp EEEEC-CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECGGGTTTEEEEEET---TTTEE
T ss_pred EEcCC-CEEEcCCCeEEEEEEecCcccCCCeEEEEEECCCCCcEEEEEEccCCCceeeCcccCCeEEEEEeC---CCCEE
Confidence 44444 46789999999999987533 46799987531 1 11 1 0 1233322211 01235
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++..|+|.|.|.+.+.
T Consensus 80 ~L~I~~~~~~Dsg~Y~C~~~~~ 101 (117)
T 2yc1_A 80 SLQMNSLRAEDTAVYYCARGGV 101 (117)
T ss_dssp EEEECSCCGGGCEEEEEEEEET
T ss_pred EEEECCCCHHHCEEEEEEEEeC
Confidence 7999999999999999998764
No 447
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=98.93 E-value=1e-08 Score=60.88 Aligned_cols=74 Identities=23% Similarity=0.325 Sum_probs=53.4
Q ss_pred ceeeecCCCcEEEEEEeeecccceeE-Ee--eccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPKSINY-WV--RDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~~~~~-w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..+.+..|+.+.|.|.+.+.|.|.+. |. +++..+... .. .... .......|.|.++...|.|.|.|.+.|.
T Consensus 172 ~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~-~~---~~~~--~~~~~~~l~I~~~~~~d~g~Y~c~A~n~ 245 (731)
T 2v5y_A 172 QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK-EI---KVTS--SRRFIASFNVVNTTKRDAGKYRCMIRTE 245 (731)
T ss_dssp CCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE-EE---EECC--SSEEEEEEEECSCCTTTCEEEEEEEEET
T ss_pred cceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc-ce---EEec--cccceEEEEEcccccccCeEEEEEEECC
Confidence 45778899999999999999999887 66 444333211 10 0000 1113478999999999999999999999
Q ss_pred CCc
Q psy4613 86 LGE 88 (96)
Q Consensus 86 ~g~ 88 (96)
.|.
T Consensus 246 ~G~ 248 (731)
T 2v5y_A 246 GGV 248 (731)
T ss_dssp TEE
T ss_pred CCC
Confidence 886
No 448
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=98.93 E-value=1.5e-09 Score=57.61 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=53.4
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC 80 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c 80 (96)
+|.+...+..+.+..|+.+.|.|.+.+. +.|++..... ...... .....|.|.+++..|.|.|.|
T Consensus 4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~------~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C 68 (292)
T 4dkd_C 4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH------WTLYSD-----GSSSILSTNNATFQNTGTYRC 68 (292)
T ss_dssp CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS------CEECCB-----TTEEEEEESSCCGGGCSCEEE
T ss_pred CceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc------eEEecc-----CceEEEEEcccccccCEEEEE
Confidence 5778777778889999999999998773 8898653221 111100 023689999999999999999
Q ss_pred EEecCCCceEEE
Q psy4613 81 IAKNSLGEVESS 92 (96)
Q Consensus 81 ~~~~~~g~~~~~ 92 (96)
.+.+..+.....
T Consensus 69 ~~~n~~~~~~~~ 80 (292)
T 4dkd_C 69 TEPGDPLGGSAA 80 (292)
T ss_dssp CCCC----CCEE
T ss_pred EEccCCCCcceE
Confidence 998876654433
No 449
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=98.93 E-value=1.8e-08 Score=51.86 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=54.6
Q ss_pred cCceeeecCCCcEEEEEEeeeccc-ceeEEeecccee----Ee----cccceEEEEe-ccc---c--ceEEEEEEEccCC
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDM----VI----SSERYEVESI-SRS---I--FDFKMRLTIKKIT 71 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~-~~~~w~~~~~~~----~~----~~~~~~~~~~-~~~---~--~~~~~~l~i~~~~ 71 (96)
.+..+.+..|+.+.|.|.+.+.+. +.+.|++.+... .. ....+..... ... . ......|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~ 85 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ 85 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence 345677899999999999998884 899999754331 10 0111111110 000 0 0011239999999
Q ss_pred CCCCeeEEEEEecCC-CceEEEE
Q psy4613 72 KYDLGSYKCIAKNSL-GEVESSI 93 (96)
Q Consensus 72 ~~d~g~y~c~~~~~~-g~~~~~~ 93 (96)
..|.|.|.|.+.+.. +.....+
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~ 108 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATA 108 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEE
T ss_pred cccCceEEEEEEecCCCceEEEE
Confidence 999999999999876 5444443
No 450
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=98.93 E-value=6.9e-08 Score=48.07 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=53.0
Q ss_pred CeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc-------eeEe--c--------------ccceEEEEecccc
Q psy4613 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG-------DMVI--S--------------SERYEVESISRSI 58 (96)
Q Consensus 2 p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~-------~~~~--~--------------~~~~~~~~~~~~~ 58 (96)
+.+...+..+.+..|+.+.|.|.........+.|++... .++. . ..++..... .
T Consensus 10 ~~v~Q~P~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~p~~Li~~~~~~~~~~y~~~~~~~~Rfs~s~~---~ 86 (166)
T 3dmm_C 10 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD---T 86 (166)
T ss_dssp CEEEEECSCBCCCTTCCEEEEEEEESSSCCEEEEEEEETTCSCCSCEEEEEEESSSCCEEECGGGSSCCSEEEECS---T
T ss_pred ccEEEeCCeEEEcCCCCEEEEEEEeCCCCceEEEEEECCCCCCCCcEEEEEEeCCCCceeeccccccccceEEEcC---C
Confidence 345566667789999999999998754566899987422 1111 0 111211111 1
Q ss_pred ceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 59 FDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 59 ~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.....|.|.+++.+|+|.|+|.+...
T Consensus 87 -~~~~sL~I~~vq~eDsG~YyCa~~~~ 112 (166)
T 3dmm_C 87 -NNKYVLTLNKFSKENEGYYFCSVISN 112 (166)
T ss_dssp -TTEEEEEESSCCTTTCEEEEEEEESS
T ss_pred -CCEEEEEECCCChhhCEEEEEEECCC
Confidence 12367999999999999999998753
No 451
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=98.93 E-value=1e-08 Score=53.76 Aligned_cols=63 Identities=13% Similarity=0.290 Sum_probs=46.7
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+..|+.++|.|.+.+. .+.+.|++++..+.. ..... .....|.|.+++..|.|.|.|.+.+.
T Consensus 112 ~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~---~~~~~-------~~~~~l~I~~v~~~d~G~Y~C~a~n~ 174 (242)
T 1p6f_A 112 EVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV---QRGYG-------KVQAEFPLGPVTTAHRGTYRCFGSYN 174 (242)
T ss_dssp EEETTCEEEEEEECTTS-CSEEEEEECSSSCEE---EEEEC-------SSEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred ccCCCCcEEEEEecCCC-CCEEEEEECCCccCc---cccCC-------CceEEEEeCCCccccCEEEEEEEECC
Confidence 46789999999998764 458899998755432 11100 13477999999999999999999864
No 452
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=98.92 E-value=6.8e-08 Score=49.58 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=51.4
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeeccc--e--eE-ec---------------ccceEEEEeccccceEEEEEE
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--D--MV-IS---------------SERYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~--~~-~~---------------~~~~~~~~~~~~~~~~~~~l~ 66 (96)
..+.+..|+.+.|.|.+.+.+ .+.+.|++... . .+ .. ..++.+.... ......|.
T Consensus 8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~ 84 (220)
T 1pz5_B 8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDD---SKSSVYLQ 84 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEG---GGTEEEEE
T ss_pred CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeC---CCCeEEEE
Confidence 456789999999999998765 67899988531 1 11 00 1233332211 01235799
Q ss_pred EccCCCCCCeeEEEEEecCC
Q psy4613 67 IKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~~ 86 (96)
|.+++..|.|.|.|.+.+..
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~ 104 (220)
T 1pz5_B 85 MNNLRAEDTGIYYCTRGGAV 104 (220)
T ss_dssp ECSCCGGGCEEEEEEEECTT
T ss_pred EccCCHHHCEEEEEEEecCC
Confidence 99999999999999999864
No 453
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=98.92 E-value=2.8e-08 Score=51.72 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=52.8
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc--ee--Ee--c----------ccceEEEEeccccceEEEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DM--VI--S----------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~--~~--~~--~----------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
+...+..+.+..|+.+.|.|.+. .+.+.+.|++... .. .. . ..++.+... ......|.|
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~----~~~~~~L~I 76 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP----SQEQFSLIL 76 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC----SSSEEEEEE
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec----CCCEEEEEE
Confidence 34556677899999999999984 4677899998531 11 10 0 112222110 012467999
Q ss_pred ccCCCCCCeeEEEEEecCC
Q psy4613 68 KKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~ 86 (96)
.+++..|.|.|.|.+.+..
T Consensus 77 ~~v~~~D~G~Y~C~~~~~~ 95 (238)
T 1bec_A 77 ELATPSQTSVYFCASGGGR 95 (238)
T ss_dssp SSCCGGGCEEEEEEEESCT
T ss_pred ecCCcccCEEEEEEEecCC
Confidence 9999999999999998863
No 454
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=98.92 E-value=5.4e-08 Score=50.12 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=52.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--e--eEe-c-------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--D--MVI-S-------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~--~~~-~-------------~~~~~~~~~~~~~~~~~~ 63 (96)
+..+ ..+.+..|+.+.|.|.+.+.+ .+.+.|++... . .+. . ..++.+.... .....
T Consensus 4 ~~q~-~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (220)
T 2fbj_H 4 LLES-GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN---AKNSL 79 (220)
T ss_dssp EEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS---SSCEE
T ss_pred EecC-CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeC---CCCEE
Confidence 3344 347789999999999998755 56899987531 1 111 0 1233332210 01246
Q ss_pred EEEEccCCCCCCeeEEEEEecCCC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.|.+++..|+|.|.|.+.+..+
T Consensus 80 ~L~I~~v~~~DsG~Y~C~~~~~~~ 103 (220)
T 2fbj_H 80 YLQMSKVRSEDTALYYCARLHYYG 103 (220)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTT
T ss_pred EEEECCCChhhCEEEEEEEecccc
Confidence 799999999999999999987643
No 455
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=98.92 E-value=1.6e-07 Score=44.30 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=49.6
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe---c-----------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI---S-----------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~---~-----------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|++++|.|.+.+.+ ...+.|++... ..+. . ..++...... .....
T Consensus 6 v~qp~-~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 81 (121)
T 2xt1_B 6 LVESG-GGLVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYDDSVKGRFTITRDD---DKNIL 81 (121)
T ss_dssp EEEEC-CEEEETTCCEEEEEEEESSSCCCSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEET---TTTEE
T ss_pred EEcCC-CEEEeCCCCEEEEEEecCeeccCceEEEEEECCCCCcEEEEEEecCCCcceeCcccCCeEEEEEeC---CCCEE
Confidence 34443 57789999999999987533 55799998521 1111 0 1233322211 01246
Q ss_pred EEEEccCCCCCCeeEEEEEe
Q psy4613 64 RLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~ 83 (96)
.|.|.+++.+|+|.|.|.+.
T Consensus 82 sL~I~~v~~~DsG~Y~C~~~ 101 (121)
T 2xt1_B 82 YLQMNDLKPEDTAMYYCKAS 101 (121)
T ss_dssp EEEECSCCGGGCEEEEEEET
T ss_pred EEEECCCCHHHCEEEEEEEE
Confidence 79999999999999999986
No 456
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=98.92 E-value=5.8e-08 Score=50.09 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=50.7
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--------------cccceEEEEeccccceEEEEEEEc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--------------SSERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
..+.+..|+.+.|.|.+.+.+ .+.+.|++... ..+. ...++.+..... .....|.|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I~ 84 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNS---KNTLYLQMN 84 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETT---TTEEEEEEC
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCC---CCEEEEEEC
Confidence 456789999999999998755 46899997531 1110 012333221100 013579999
Q ss_pred cCCCCCCeeEEEEEecCC
Q psy4613 69 KITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~ 86 (96)
+++..|.|.|.|.+.+..
T Consensus 85 ~v~~~D~G~Y~C~~~~~~ 102 (223)
T 1dee_B 85 SLRAEDTAVYYCAKVKFY 102 (223)
T ss_dssp SCCGGGCEEEEEEEESSS
T ss_pred CCCHHHCEEEEEEEeccc
Confidence 999999999999998864
No 457
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=98.92 E-value=2.4e-08 Score=52.78 Aligned_cols=77 Identities=14% Similarity=0.292 Sum_probs=51.4
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eEe-ccc------------ceEEEEeccccceEEEEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MVI-SSE------------RYEVESISRSIFDFKMRLT 66 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~~-~~~------------~~~~~~~~~~~~~~~~~l~ 66 (96)
+..++..+.+..|+.+.|.|.+.+ +.+.+.|++.. .. ... ... ++..... ......|.
T Consensus 30 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~ 104 (270)
T 3qib_D 30 VIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECP----SNSPCSLE 104 (270)
T ss_dssp CEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECC----TTSCEEEE
T ss_pred EEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeC----CCcEEEEE
Confidence 345566778999999999999865 67789998732 11 110 000 2222110 01246799
Q ss_pred EccCCCCCCeeEEEEEecC
Q psy4613 67 IKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 67 i~~~~~~d~g~y~c~~~~~ 85 (96)
|.+++..|.|.|.|.+.+.
T Consensus 105 I~~v~~~D~G~Y~C~~~~~ 123 (270)
T 3qib_D 105 IQSSEAGDSALYLCASSLN 123 (270)
T ss_dssp ESSCCGGGCEEEEEEEESC
T ss_pred ECCCCHhHCeEEEEEEecC
Confidence 9999999999999999863
No 458
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=98.91 E-value=6e-08 Score=50.38 Aligned_cols=77 Identities=14% Similarity=0.288 Sum_probs=47.1
Q ss_pred cCC-CcEEEEEEeeec-ccc-eeEEee-ccceeEecccceEEEEeccccceEEEEEEEccCCC--CCCeeEEEEEecCCC
Q psy4613 14 PID-TDVTLECYVEAY-PKS-INYWVR-DQGDMVISSERYEVESISRSIFDFKMRLTIKKITK--YDLGSYKCIAKNSLG 87 (96)
Q Consensus 14 ~~g-~~~~l~c~~~~~-~~~-~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~g~y~c~~~~~~g 87 (96)
..| ..+.|.|.+.+. |.+ .+.|++ ++..+.. ........ ....+...+.|.|..... .|.|.|.|.+.+..+
T Consensus 138 ~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~-~~~~~~~~-~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~ 215 (232)
T 1dn0_B 138 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISS-TRGFPSVL-RGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG 215 (232)
T ss_dssp ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECC-EEECCCEE-ETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred CCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceee-EEECCccc-cCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCC
Confidence 367 899999999886 666 899999 6544321 00000000 012222456788888776 778999999999888
Q ss_pred ceEEE
Q psy4613 88 EVESS 92 (96)
Q Consensus 88 ~~~~~ 92 (96)
.....
T Consensus 216 ~~~~~ 220 (232)
T 1dn0_B 216 NKEKN 220 (232)
T ss_dssp CEEEE
T ss_pred Cccee
Confidence 65443
No 459
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A
Probab=98.91 E-value=2.7e-08 Score=51.12 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=51.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c------ccceEEEEeccccceEEEEEEEccCCC
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S------SERYEVESISRSIFDFKMRLTIKKITK 72 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 72 (96)
+...+..+.+..|+.+.|.|.+.+. ...+.|++... ..+. . ..|+...... ......|.|.+++.
T Consensus 6 V~Q~p~~v~v~~G~svtL~C~~s~~-~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~l~~ 81 (205)
T 3qjh_A 6 VEQSPSALSLHEGTGSALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDS---KERYSTLHIRDAQL 81 (205)
T ss_dssp BEEECSEEEEETTCCEEEEEECSSC-EEEEEEEEEC-CCCEEEEEEESSEEEEETTEEEEEET---TTTEEEEEECSCCG
T ss_pred EEEeCCEEEEeCCCCEEEEEEEECC-cceEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcC---CCCEEEEEEecccc
Confidence 4455667889999999999998776 56899998531 1111 1 1233222111 11246799999999
Q ss_pred CCCeeEEEEEe
Q psy4613 73 YDLGSYKCIAK 83 (96)
Q Consensus 73 ~d~g~y~c~~~ 83 (96)
+|+|.|.|.+.
T Consensus 82 ~DsG~Y~Cav~ 92 (205)
T 3qjh_A 82 EDSGTYFCAAE 92 (205)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCeEEEEEEE
Confidence 99999999987
No 460
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=98.91 E-value=2.2e-08 Score=51.78 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=51.4
Q ss_pred ceeeecCCCcEEEEEEeeeccc----ceeEEeecc--cee--E-ec------------ccceEEEEeccccceEEEEEEE
Q psy4613 9 QLVGAPIDTDVTLECYVEAYPK----SINYWVRDQ--GDM--V-IS------------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~~----~~~~w~~~~--~~~--~-~~------------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
..+.+..|+.+.|.|.+.+.+. +.+.|++.. ... + .. ..++.+..... .....|.|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I 84 (228)
T 3bae_H 8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS---RDMVFMKI 84 (228)
T ss_dssp CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT---TTEEEEEE
T ss_pred CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC---CCeEEEEE
Confidence 4567899999999999988664 789998753 111 1 10 12333221110 01367999
Q ss_pred ccCCCCCCeeEEEEEecCCC
Q psy4613 68 KKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~g 87 (96)
.+++..|.|.|.|.+.+..|
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~g 104 (228)
T 3bae_H 85 TSVDTADTATYYCARRGFYG 104 (228)
T ss_dssp CSCCGGGCEEEEEEEEEEST
T ss_pred cCCCcccCEEEEEEEecCCC
Confidence 99999999999999987643
No 461
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=98.91 E-value=5.7e-09 Score=53.90 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=48.5
Q ss_pred ecCCCcEEEEEEeeec-ccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEAY-PKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+. |.+ .+.|++++..+....... . ......+...+.|.|......| |.|.|.+.|..+...
T Consensus 140 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~-~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 140 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPA-V-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp CCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCC-E-ECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred ccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCc-e-eCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 3578999999999886 666 899998764321000000 0 0111222245678888888778 999999999765443
No 462
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=98.91 E-value=4.6e-09 Score=57.58 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=51.1
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
.+..|+.+.|.|.+.+.|.+.+.|++++..... ....|.|.++...|.|.|.|.+.+..+....
T Consensus 107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~----------------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~ 170 (363)
T 1wio_A 107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ----------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEF 170 (363)
T ss_dssp SEESBSCEEEEEECCTTCCCCEEEECSSSCEEE----------------ESSEEEECSBCGGGCEECEEEEEETTEEEEE
T ss_pred EEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc----------------cceEEEEeeCChhcCCEEEEEEecCCCeEEE
Confidence 467899999999998889999999988644311 1257899999999999999999987554433
No 463
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=98.91 E-value=1.6e-09 Score=55.47 Aligned_cols=70 Identities=17% Similarity=0.083 Sum_probs=47.5
Q ss_pred ceeeecCC--CcEEEEEEeeecccceeEEeec--cceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 9 QLVGAPID--TDVTLECYVEAYPKSINYWVRD--QGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 9 ~~~~~~~g--~~~~l~c~~~~~~~~~~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
..+.+..| +.+.|.|.+.+ |.+.+.|++. ++.......+.... ....|.|.+++..|.|.|.|.+.+
T Consensus 15 ~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~--------~~~~l~I~~v~~~D~G~Y~C~a~n 85 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD--------SKKGFTIPSYMISYAGMVFCEAKI 85 (213)
T ss_dssp EEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE--------TTTEEEEEGGGTTTCSEEEEEEC-
T ss_pred eEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc--------CCccEEEccCChhcCceEEEEEEE
Confidence 56678889 99999999876 6788999875 33332222222211 123589999999999999999987
Q ss_pred CCC
Q psy4613 85 SLG 87 (96)
Q Consensus 85 ~~g 87 (96)
..+
T Consensus 86 ~~~ 88 (213)
T 2x1w_L 86 NDE 88 (213)
T ss_dssp ---
T ss_pred CCe
Confidence 433
No 464
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*
Probab=98.91 E-value=3.6e-09 Score=49.85 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=49.7
Q ss_pred CceeeecCCCcEEEEEEeeecc----cceeEEeecc---ceeEe-----cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP----KSINYWVRDQ---GDMVI-----SSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~----~~~~~w~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
+..+.+..|+++.|.|.+...+ ...+.|++.. ..... ...++...............|.|.+++..|+
T Consensus 14 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~Ds 93 (120)
T 3noi_A 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDA 93 (120)
T ss_dssp CSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGC
T ss_pred CCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhC
Confidence 4567789999999999987654 4579999874 11111 1122222110000011235799999999999
Q ss_pred eeEEEEEec
Q psy4613 76 GSYKCIAKN 84 (96)
Q Consensus 76 g~y~c~~~~ 84 (96)
|.|.|.+..
T Consensus 94 G~Y~C~v~~ 102 (120)
T 3noi_A 94 SIYVCRVEV 102 (120)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999874
No 465
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=98.91 E-value=2.5e-08 Score=52.40 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=48.2
Q ss_pred ecCCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceE
Q psy4613 13 APIDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~ 90 (96)
+..|..+.|.|.+.+ .|.+ .+.|++++.......... .. .. ..+...+.|.|......| |.|.|.+.+..+...
T Consensus 136 ~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~-~~-~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~ 211 (253)
T 3liz_H 136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA-VL-QS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 211 (253)
T ss_dssp ---CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EE-ET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEE
T ss_pred cCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCc-cc-cC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcc
Confidence 456899999999988 5666 799998764221000000 00 00 122244778999998889 999999999877554
Q ss_pred EE
Q psy4613 91 SS 92 (96)
Q Consensus 91 ~~ 92 (96)
..
T Consensus 212 ~~ 213 (253)
T 3liz_H 212 VD 213 (253)
T ss_dssp EE
T ss_pred eE
Confidence 33
No 466
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=98.90 E-value=5.6e-09 Score=56.49 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=47.2
Q ss_pred CcEEEEEEeeec-c-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCceEE
Q psy4613 17 TDVTLECYVEAY-P-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91 (96)
Q Consensus 17 ~~~~l~c~~~~~-~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~~~ 91 (96)
+.+.|.|.+.+. | .+.+.|++++..+............ ...+...+.|.|......|.|.|.|.+.+..+....
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~-~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~ 100 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQE-GELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED 100 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEE-TTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCcc-CCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcce
Confidence 589999999885 3 4689999986554311111111111 112223456777777777999999999998765443
No 467
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=98.90 E-value=4.8e-08 Score=52.33 Aligned_cols=75 Identities=13% Similarity=0.192 Sum_probs=50.5
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEec--------------ccceEEEEeccccceEEEEEEEc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVIS--------------SERYEVESISRSIFDFKMRLTIK 68 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~ 68 (96)
..+.+..|+++.|.|.+.+.+ .+.+.|++... ..+.. ..++.+.... ......|.|.
T Consensus 30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~ 106 (291)
T 2gki_A 30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDK---SSSTAYMELS 106 (291)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEG---GGTEEEEEEC
T ss_pred CcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeC---CCCEEEEEEC
Confidence 356788999999999988765 57899998531 11100 1222221110 0023679999
Q ss_pred cCCCCCCeeEEEEEecCC
Q psy4613 69 KITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~ 86 (96)
+++..|+|.|.|.+.+..
T Consensus 107 ~v~~~DsG~Y~C~~~~~~ 124 (291)
T 2gki_A 107 SLTSEDSAVYYCARGAYK 124 (291)
T ss_dssp SCCGGGCEEEEEEEECGG
T ss_pred cCCHHHCEEEEEEEeccc
Confidence 999999999999998863
No 468
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}
Probab=98.90 E-value=5.9e-08 Score=50.63 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=53.5
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--ce--eE-e------cccceEEEEeccccceEEEEEEEccCC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--GD--MV-I------SSERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~~--~~-~------~~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
.+...+..+.+..|+.+.|.|.+.+. ...+.|++.. .. .+ . ...|+...... ......|.|.+++
T Consensus 3 ~V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~---~~~~~sLtI~~lq 78 (229)
T 3mbe_C 3 PVEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNS---KERYSTLHIKDAQ 78 (229)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEET---TTTEEEEEECSCC
T ss_pred cEEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECC---CCCEEEEEEECCc
Confidence 35566777889999999999998876 6689999752 11 11 1 11233322111 1124679999999
Q ss_pred CCCCeeEEEEEec
Q psy4613 72 KYDLGSYKCIAKN 84 (96)
Q Consensus 72 ~~d~g~y~c~~~~ 84 (96)
.+|+|.|.|.+..
T Consensus 79 ~~DSG~Y~Ca~~~ 91 (229)
T 3mbe_C 79 LEDSGTYFCAAED 91 (229)
T ss_dssp STTCBEEEEEEEC
T ss_pred ccCCCCEEEEEEe
Confidence 9999999999875
No 469
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=98.89 E-value=4.4e-09 Score=54.12 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=45.5
Q ss_pred CCCcEEEEEEeee-cccc-eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 15 IDTDVTLECYVEA-YPKS-INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 15 ~g~~~~l~c~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
.|..+.|.|.+.+ .|.+ .+.|++++..+. ..............+...+.|.+......|.|.|.|.+.|....
T Consensus 131 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~-~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 131 SRKDVSLTCLVVGFNPGDISVEWTSNGHTEE-NYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEEEC-CEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred cCCceEEEEEEEeeeCCCcEEEEEECCEecc-CceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 4899999999998 5665 899999876542 11111111111122334455666655555689999999997553
No 470
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=98.89 E-value=2.3e-08 Score=53.31 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=52.7
Q ss_pred eEEecCceeeecCCCcEEEEEEeeec--ccceeEEeeccce-----eEec-------------ccceEEEEeccccceEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAY--PKSINYWVRDQGD-----MVIS-------------SERYEVESISRSIFDFK 62 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~ 62 (96)
.+.. +..+.+..|+.+.|.|.+.+. +.+.+.|++.... +... ..++.+.... ....
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~ 78 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQ---STRT 78 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEET---TTTE
T ss_pred eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeC---CCCE
Confidence 4555 566778999999999998775 4578999874211 0000 1133322111 0123
Q ss_pred EEEEEccCCCCCCeeEEEEEecC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
..|.|.+++..|+|.|.|.+.+.
T Consensus 79 ~sL~I~~v~~~DsG~Y~C~~~~~ 101 (280)
T 3fku_X 79 AYMDLRSLRSEDTAVYYCARSPS 101 (280)
T ss_dssp EEEEECSCCSTTCEECCEEECSS
T ss_pred EEEEECCCChhhCEEEEEEEecC
Confidence 57999999999999999999876
No 471
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=98.89 E-value=7.1e-08 Score=45.57 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=50.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e--c-----------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I--S-----------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~--~-----------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|++++|.|.+.+.. ...+.|++... ..+ . . ..++...... .....
T Consensus 6 v~q~~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 81 (123)
T 2p45_B 6 MVESG-GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRMTISRDK---GKNTV 81 (123)
T ss_dssp EEEEC-CEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECTTTBTTEEEECCT---TSSEE
T ss_pred EEccC-CEEEeCCCCEEEEEEecCccCcCcEEEEEEECCCCCcEEEEEEecCCCceEeCcccCCeEEEEEeC---CCCEE
Confidence 44444 46789999999999987532 56799987531 111 1 0 1123222110 11346
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 82 ~L~I~~~~~~Dsg~Y~C~~~~~ 103 (123)
T 2p45_B 82 YLQMDSLKPEDTATYYCAAGGY 103 (123)
T ss_dssp EEEESSCCGGGCEEEEEEESSC
T ss_pred EEEECCCCHHHCEEEEEEEEec
Confidence 7999999999999999998763
No 472
>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*
Probab=98.89 E-value=1.9e-07 Score=44.16 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=50.5
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-ec---------------ccceEEEEeccccceE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-IS---------------SERYEVESISRSIFDF 61 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~~---------------~~~~~~~~~~~~~~~~ 61 (96)
+..++ .+.+..|++++|.|...+.. ...+.|++... ..+ .. ..++...... ...
T Consensus 4 l~q~~-~~~~~~G~~vtL~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~y~~~~~~~~~~~~~~~~Rf~~~~~~---~~~ 79 (124)
T 1dlf_H 4 LEESG-GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDD---SKR 79 (124)
T ss_dssp EEEEC-CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEET---TTT
T ss_pred EEccC-CEEEcCCCCEEEEeECCCccCCCCeEEEEEECCCCCceEEEEEEeccCCCceeeCcccCCcEEEEEcC---CCC
Confidence 44443 56789999999999987532 45799987531 111 11 1122222111 012
Q ss_pred EEEEEEccCCCCCCeeEEEEEecC
Q psy4613 62 KMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 62 ~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
...|.|.+++.+|+|.|.|.+.+.
T Consensus 80 ~~~L~I~~~~~~Dsg~Y~C~~~~~ 103 (124)
T 1dlf_H 80 RVYLQMNTLRAEDTGIYYCTGIYY 103 (124)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEBT
T ss_pred EEEEEECCCCHHHCEEEEEEEEeC
Confidence 457999999999999999998864
No 473
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=98.89 E-value=6.3e-08 Score=51.22 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=52.8
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee--------------cccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI--------------SSERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~--------------~~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|+.+.|.|.+.+.+ .+.+.|++... .+ +. ...++.+.... .....
T Consensus 4 l~qp~-~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (257)
T 3bn9_D 4 LVQSG-GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN---SKNTL 79 (257)
T ss_dssp EEEEC-CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEET---TTTEE
T ss_pred EEccC-CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecC---CCCEE
Confidence 34443 45689999999999998765 56899987531 11 10 01233322110 01235
Q ss_pred EEEEccCCCCCCeeEEEEEecCCC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
.|.|.+++..|.|.|.|.+.+..|
T Consensus 80 sL~I~~v~~~DsG~Y~C~~~~~~g 103 (257)
T 3bn9_D 80 YLQMSSLRAEDTAVYYCARPYLTY 103 (257)
T ss_dssp EEEEESCCGGGCEEEEEEEECCSS
T ss_pred EEEECCCChhhCEEEEEEEecCCC
Confidence 799999999999999999998654
No 474
>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B
Probab=98.88 E-value=2e-07 Score=43.86 Aligned_cols=78 Identities=13% Similarity=0.285 Sum_probs=50.5
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe--c------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI--S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~--~------------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|+++.|.|.+.+.. ...+.|++... ..+. . ..++...... .....
T Consensus 4 v~qp~-~~~~~~G~~v~L~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (120)
T 1mfa_H 4 VQQSG-TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVT---STTTA 79 (120)
T ss_dssp EEECC-CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEET---TTTEE
T ss_pred EECCC-CEEEeCCCCEEEEEEeeCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEeC---CCCEE
Confidence 44444 46789999999999987533 45799987421 1111 0 1233322111 01236
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++..|+|.|.|.+.+.
T Consensus 80 ~L~I~~~~~~Dsg~Y~C~~~~~ 101 (120)
T 1mfa_H 80 YMELSSLTSEDSAVYYCTRGGH 101 (120)
T ss_dssp EEEECSCCGGGCEEEEEEEEET
T ss_pred EEEECCCCHHHCEEEEEEEecC
Confidence 7999999999999999998765
No 475
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=98.88 E-value=7.9e-09 Score=52.08 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=51.3
Q ss_pred ceeeecCCCcEEEEEEee--ecccceeEEee--ccceeEe---------cccceEEEEeccccceEEEEEEEccCCCCCC
Q psy4613 9 QLVGAPIDTDVTLECYVE--AYPKSINYWVR--DQGDMVI---------SSERYEVESISRSIFDFKMRLTIKKITKYDL 75 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~--~~~~~~~~w~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 75 (96)
..+....|+++.|.|... +.+.+.+.|++ ++..+.. ...++.+. ...+|.|.+++..|+
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~--------~ngsL~I~~v~~~Ds 78 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF--------KNGTLKIKHLKTDDQ 78 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC--------TTSCEEECSCCGGGC
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC--------CCCCEEECCCChhhC
Confidence 446678899999999543 34567899998 6544321 12232221 124799999999999
Q ss_pred eeEEEEEecCCCce
Q psy4613 76 GSYKCIAKNSLGEV 89 (96)
Q Consensus 76 g~y~c~~~~~~g~~ 89 (96)
|.|.|.+.+..|..
T Consensus 79 G~Y~c~~~n~~g~~ 92 (182)
T 1hnf_A 79 DIYKVSIYDTKGKN 92 (182)
T ss_dssp EEEEEEEEETTSCE
T ss_pred EEEEEEEEeCCCce
Confidence 99999999987764
No 476
>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E
Probab=98.88 E-value=9e-08 Score=45.99 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=50.7
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e-c------------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I-S------------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~-~------------~~~~~~~~~~~~~~~~~~ 63 (96)
+..++ .+.+..|++++|.|.+.+.. ...+.|++... ..+ . . ..++...... .....
T Consensus 4 v~qp~-~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~---~~~~~ 79 (134)
T 1zvh_A 4 LVESG-GGSVQAGGSLRLSCAASGYIASINYLGWFRQAPGKEREGVAAVSPAGGTPYYADSVKGRFTVSLDN---AENTV 79 (134)
T ss_dssp EEEEC-CEEECTTCCEEEEEEEEESGGGEEEEEEEEECTTSCCEEEEEECTTTCCEEECTTTBTTBEEEEET---TTTEE
T ss_pred EEcCC-CEEEccCCCEEEEEEeCCCCcCCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCcEEEEEcC---CCCEE
Confidence 34444 46789999999999987643 45789987531 111 1 0 1233322211 01235
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 80 sL~I~~~~~~DsG~Y~C~~~~~ 101 (134)
T 1zvh_A 80 YLQMNSLKPEDTALYYCAAARQ 101 (134)
T ss_dssp EEEECSCCGGGCEEEEEEEEES
T ss_pred EEEECCCCHHHCEEEEEEEecC
Confidence 7999999999999999998765
No 477
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=98.88 E-value=1.4e-08 Score=51.78 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=52.1
Q ss_pred ecCceeeecCCCcEEEEEEeeec-------ccceeEEeecccee-----Ee-----------cccceEEEEeccccceEE
Q psy4613 6 VPNQLVGAPIDTDVTLECYVEAY-------PKSINYWVRDQGDM-----VI-----------SSERYEVESISRSIFDFK 62 (96)
Q Consensus 6 ~~~~~~~~~~g~~~~l~c~~~~~-------~~~~~~w~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~ 62 (96)
..+..+.+..|+.+.|.|.+... +.+.+.|++.+... .. ...++.+.... ....
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~ 81 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDV---QKKN 81 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCG---GGTB
T ss_pred eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccC---CCCe
Confidence 34566788999999999998754 46789999875321 10 01222221100 0012
Q ss_pred EEEEEccCCCCCCeeEEEEEecCC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~ 86 (96)
..|.|.+++..|.|.|.|.+.+..
T Consensus 82 ~sL~I~~v~~~D~G~Y~C~~~~~~ 105 (214)
T 2zg1_A 82 CSLSIGDARMEDTGSYFFRVERGR 105 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEccCCHhhCceEEEEEEcCC
Confidence 469999999999999999998765
No 478
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=98.88 E-value=9.1e-09 Score=55.67 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=50.8
Q ss_pred ceeeecCCCcEEEEEEeeec-ccc---eeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEec
Q psy4613 9 QLVGAPIDTDVTLECYVEAY-PKS---INYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKN 84 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~-~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~ 84 (96)
....+..|+.+.|.|.+.+. |.+ .+.|+++++........... ......+.....|.|.++...|.|.|.|.+.+
T Consensus 121 ~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n 199 (323)
T 2wqr_A 121 SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH 199 (323)
T ss_dssp CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEEEEEEEECHHHccCCCCEEEEEEC
Confidence 33346779999999999875 455 89999875443211111110 01111111346799999999999999999998
Q ss_pred CCC
Q psy4613 85 SLG 87 (96)
Q Consensus 85 ~~g 87 (96)
..+
T Consensus 200 ~~~ 202 (323)
T 2wqr_A 200 PHL 202 (323)
T ss_dssp TTS
T ss_pred CCC
Confidence 764
No 479
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Probab=98.87 E-value=1.2e-07 Score=48.85 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=53.2
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccc-eeEEeeccc----eeE-ec---------ccceEEEEeccccceEEEEEEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKS-INYWVRDQG----DMV-IS---------SERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~-~~~w~~~~~----~~~-~~---------~~~~~~~~~~~~~~~~~~~l~i 67 (96)
.+...+..+.+..|+.+.|.|.+.+.... .+.|++... ..+ .. ..|+...... ......|.|
T Consensus 5 ~v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~---~~~~~~L~I 81 (211)
T 2ak4_D 5 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK---STSSFNFTI 81 (211)
T ss_dssp EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEET---TTTEEEEEE
T ss_pred ceEEeCCEEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcC---CCCEEEEEE
Confidence 35566677889999999999998764444 799987531 111 10 1222221110 012367999
Q ss_pred ccCCCCCCeeEEEEEecC
Q psy4613 68 KKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~ 85 (96)
.+++..|.|.|.|.+.+.
T Consensus 82 ~~~~~~Dsg~Y~C~~~~~ 99 (211)
T 2ak4_D 82 TASQVVDSAVYFCALSGF 99 (211)
T ss_dssp SSCCGGGCEEEEEEEECS
T ss_pred CccccccCceEEEEEEcC
Confidence 999999999999999863
No 480
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=98.87 E-value=7.9e-09 Score=52.75 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=43.5
Q ss_pred cCCCcEEEEEEeeeccc----ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 14 PIDTDVTLECYVEAYPK----SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 14 ~~g~~~~l~c~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
..|+.+.|.|.+.+.+. ..+.|++++..+... ............+.....+.+......|.|.|.|.+.+..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~-~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~ 94 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA-KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCC-EECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCc-ccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence 68999999999988652 389999986543211 0000000111111122334333333344999999999987753
No 481
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A
Probab=98.87 E-value=4.2e-08 Score=45.30 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCeEEecCceeeecCCCcEEEEEEeeecccceeEEeeccceeEec-ccceEEEEeccccceEEEEEEEccCCCCCCeeEE
Q psy4613 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79 (96)
Q Consensus 1 ~p~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 79 (96)
+|.+...+.. .+..|..++|.|..... ...+.|++++...... ....... .......+.|..++..|.|.|.
T Consensus 9 kPsL~a~P~~-vv~~G~~VtL~C~~~~~-~~~f~l~k~g~~~~~~~~~~~~~~-----~~~~~~~f~i~~vt~~~aG~Y~ 81 (106)
T 3kgr_A 9 RPSISAEPGT-VIPLGSHVTFVCRGPVG-VQTFRLERESRSTYNDTEDVSQAS-----PSESEARFRIDSVSEGNAGPYR 81 (106)
T ss_dssp CCEEEEESCS-EEETTCCEEEEEEECTT-CCEEEEEEGGGTEEEEECCCEEEE-----TTEEEEEEEESSCCGGGCEEEE
T ss_pred CCEEEEeCCC-ccCCCCeEEEEEEccCC-CcEEEEEECCCccccccccccccC-----CCCcceEEEecCCCcCCCceEE
Confidence 3566555544 57889999999986543 3467788886543210 0111000 0013467899999999999999
Q ss_pred EEEecC
Q psy4613 80 CIAKNS 85 (96)
Q Consensus 80 c~~~~~ 85 (96)
|...+.
T Consensus 82 C~~~~~ 87 (106)
T 3kgr_A 82 CIYYKP 87 (106)
T ss_dssp EEEEET
T ss_pred EEeeCC
Confidence 987653
No 482
>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A
Probab=98.87 E-value=2.8e-07 Score=43.77 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=51.2
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEe-c------------------ccceEEEEecccc
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVI-S------------------SERYEVESISRSI 58 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~-~------------------~~~~~~~~~~~~~ 58 (96)
+..++ .+.+..|++++|.|.+.+.. ...+.|++... ..+. . ..++......
T Consensus 4 v~qp~-~~~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Rf~~~~~~--- 79 (127)
T 1i3u_A 4 LQESG-GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDN--- 79 (127)
T ss_dssp EEEES-CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEG---
T ss_pred EECCC-CEEEeCCCcEEEEEEecCCCcCCcEEEEEEECCCCCcEEEEEEEeccccCCCcceeeCcccCCeEEEEEcC---
Confidence 44443 56789999999999987533 46799987531 1111 0 1233322211
Q ss_pred ceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 59 FDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 59 ~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
......|.|.+++.+|+|.|.|.+.+.
T Consensus 80 ~~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 106 (127)
T 1i3u_A 80 AKNTVNLQMNSLKPEDTAVYYCAAKTT 106 (127)
T ss_dssp GGTEEEEEECSCCGGGCEEEEEEEESC
T ss_pred CCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 012467999999999999999999875
No 483
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=98.87 E-value=3.5e-08 Score=51.78 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=50.7
Q ss_pred EecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeE-eccc------------ceEEEEeccccceEEEEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMV-ISSE------------RYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~-~~~~------------~~~~~~~~~~~~~~~~~l~i 67 (96)
..++..+.+..|+.+.|.|.+.+.+.+.+.|++... ... .... ++.... ... .. |.|
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~~---~~-L~I 78 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR--VTD---TE-LRL 78 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEEC--CSS---SC-CEE
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEe--CCC---Ce-EEE
Confidence 445667789999999999998888888999987321 111 0000 211111 000 11 899
Q ss_pred ccCCCCCCeeEEEEEecCC
Q psy4613 68 KKITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~~ 86 (96)
.+++..|+|.|.|.+.+..
T Consensus 79 ~~v~~~DsG~Y~C~~~~~~ 97 (253)
T 3to4_D 79 QVANMSQGRTLYCTSSADH 97 (253)
T ss_dssp EEESCSSCEEEEEEEECSC
T ss_pred ccCChhhCeEEEEEEecCC
Confidence 9999999999999998653
No 484
>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D
Probab=98.87 E-value=3.2e-07 Score=44.31 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=52.2
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeEec--------------ccceEEEEeccccceEE
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMVIS--------------SERYEVESISRSIFDFK 62 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~~ 62 (96)
.+..++..+ +.+|++++|.|...+.. ...+.|++... ..+.. ..|+.+.... ....
T Consensus 5 ~v~Q~p~~~-v~~G~sVtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~~Rfs~~~~~---~~~~ 80 (137)
T 3lh2_H 5 QLVQSGAEV-KRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADR---STST 80 (137)
T ss_dssp EEEECCCEE-ECSSCCEEEEEEEESSCSTTSCEEEEEECTTCCCEEEEEEEGGGTEEEECTTTTTTEEEEEET---TTTE
T ss_pred eEEECCCEE-EcCCCCEEEEEEecCCcccccEEEEEEECCCCCCEEEEEEEcCCCccccCcccCCcEEEEecC---CCCE
Confidence 455666666 89999999999987532 35789987421 11111 0122222110 1124
Q ss_pred EEEEEccCCCCCCeeEEEEEecCCC
Q psy4613 63 MRLTIKKITKYDLGSYKCIAKNSLG 87 (96)
Q Consensus 63 ~~l~i~~~~~~d~g~y~c~~~~~~g 87 (96)
..|.|.+++.+|+|.|.|.+....|
T Consensus 81 ~sLtI~~lq~~Dsg~Y~C~~~~~~~ 105 (137)
T 3lh2_H 81 AYLELNSLRPEDTAVYYCAREGTTG 105 (137)
T ss_dssp EEEEECSCCGGGCEEEEEEEEEEC-
T ss_pred EEEEECCCChhhCEEEEEEEEECCC
Confidence 6799999999999999999987554
No 485
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=98.87 E-value=1.1e-07 Score=44.47 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=47.0
Q ss_pred CceeeecCCCcEEEEEEeeecccc---eeEEeecccee-------Ee-cccceEEEEe---ccccceEEEEEEEccCCCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDM-------VI-SSERYEVESI---SRSIFDFKMRLTIKKITKY 73 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~-------~~-~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~ 73 (96)
+..+.+..|++++|.|...+.... .+.|++..... .. .......... ..........|.|.+++.+
T Consensus 6 p~~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 85 (117)
T 1dqt_A 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CceEEEeCCCeEEEEEEeeCCCCCCccEEEEEecCCCCCcEEEEEEEecCccceEeccEEEecccCCCEEEEEEeCCCcc
Confidence 456778999999999998743333 78999753211 10 0000000000 0000012357999999999
Q ss_pred CCeeEEEEEec
Q psy4613 74 DLGSYKCIAKN 84 (96)
Q Consensus 74 d~g~y~c~~~~ 84 (96)
|+|.|.|.+..
T Consensus 86 Dsg~Y~C~~~~ 96 (117)
T 1dqt_A 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEEEEEEEee
Confidence 99999999864
No 486
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G
Probab=98.87 E-value=9.1e-08 Score=49.85 Aligned_cols=78 Identities=17% Similarity=0.282 Sum_probs=53.6
Q ss_pred EEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c--------c-cceEEEEeccccceEEEEEEEcc
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S--------S-ERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~--------~-~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
+...+..+.+..|++++|.|.........+.|++.. . ..+. . . .|+...... ......|.|.+
T Consensus 12 V~Qsp~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~---~~~~~sLtI~~ 88 (226)
T 3tjh_C 12 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSK---SDSSFHLRKAS 88 (226)
T ss_dssp EECSCSEEEEETTSCEEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEET---TTTEEEEEESS
T ss_pred EEEeCCEEEEEcCCCEEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcC---CCCEEEEEEec
Confidence 455667788999999999999887656689999852 1 1111 0 1 333332111 11246799999
Q ss_pred CCCCCCeeEEEEEec
Q psy4613 70 ITKYDLGSYKCIAKN 84 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~ 84 (96)
++.+|+|.|.|.+..
T Consensus 89 lq~~DSG~YyCa~~~ 103 (226)
T 3tjh_C 89 VHWSDSAVYFCAVSA 103 (226)
T ss_dssp CCGGGCEEEEEEEEE
T ss_pred CCcccCCCEEEEEEe
Confidence 999999999999874
No 487
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=98.87 E-value=1.9e-07 Score=55.54 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=53.4
Q ss_pred ceeeecCCCcEEEEEEeeec--ccceeEEeeccceeEecccceEEEEec---cccceEEEEEEEccCCCCCCeeEEEEEe
Q psy4613 9 QLVGAPIDTDVTLECYVEAY--PKSINYWVRDQGDMVISSERYEVESIS---RSIFDFKMRLTIKKITKYDLGSYKCIAK 83 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~c~~~ 83 (96)
....+..|+.+.|.|.+.+. +.+.+.|++++...... ......... .........|.|.++...|.|.|.|.+.
T Consensus 232 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 310 (772)
T 3v2a_R 232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK-KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310 (772)
T ss_dssp SCEEEETTCCEEEEEEEEECTTCCCEEEEECC---------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEE
T ss_pred CceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCc-eeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEE
Confidence 33568899999999999874 45578999886543211 111000000 0111245789999999999999999999
Q ss_pred cCCCceEEEEE
Q psy4613 84 NSLGEVESSIR 94 (96)
Q Consensus 84 ~~~g~~~~~~~ 94 (96)
+..+.....+.
T Consensus 311 ~~~~~~~~~~~ 321 (772)
T 3v2a_R 311 SGLMTKKNSTF 321 (772)
T ss_dssp CSSCEEEEEEE
T ss_pred cCCcceeEEEE
Confidence 98776554443
No 488
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=98.87 E-value=7.7e-08 Score=50.88 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=49.0
Q ss_pred eeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--Ee----------------cccceEEEEeccccceEEEEEEE
Q psy4613 10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--VI----------------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~~----------------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
...+..|+.+.|.|.+.+.+ .+.+.|++.. ... +. ...++...... ......|.|
T Consensus 160 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I 236 (268)
T 1x9q_A 160 GGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD---SKSSVYLQM 236 (268)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG---GGTEEEEEE
T ss_pred ceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC---CCCEEEEEE
Confidence 45688899999999998765 3789998753 111 10 01233322111 001367999
Q ss_pred ccCCCCCCeeEEEEEecC
Q psy4613 68 KKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~ 85 (96)
.+++..|+|.|.|.+.+.
T Consensus 237 ~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 237 NNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp CSCCGGGCEEEEEEEEET
T ss_pred CCCCHHHCEEEEEEEccC
Confidence 999999999999999874
No 489
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=98.86 E-value=4.7e-09 Score=57.02 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=47.8
Q ss_pred EecCceeeecCCCcEEEEEEeeecc-cceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEE
Q psy4613 5 HVPNQLVGAPIDTDVTLECYVEAYP-KSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCI 81 (96)
Q Consensus 5 ~~~~~~~~~~~g~~~~l~c~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~ 81 (96)
..+...+.+..|..++|.|.+.+.+ .+.+.|.+++..+.....+.. . ....|.|.++...|.|.|.|.
T Consensus 10 ~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~--~-------~~~~L~i~~v~~~d~G~Y~C~ 78 (325)
T 1n26_A 10 EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA--G-------MGRRLLLRSVQLHDSGNYSCY 78 (325)
T ss_dssp CCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEE--E-------ESSEEEECSCCGGGCEEEEEE
T ss_pred ccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccc--c-------ccceEEecccchhhCeEeEEE
Confidence 3455555567999999999988654 678999987654311111111 1 225689999999999999998
No 490
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=98.86 E-value=1.1e-08 Score=54.14 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=44.7
Q ss_pred eecCCCcEEEEEEeeecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecC
Q psy4613 12 GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 12 ~~~~g~~~~l~c~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.+..|+.++|.|.+.+. .+.+.|++++..+......... ... .....|.|.+++ |.|.|.|.+.+.
T Consensus 117 ~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~---~~~--~~~~~l~I~~v~--D~G~Y~C~a~~~ 182 (257)
T 1b6u_A 117 TVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPK---VNG--TFQADFPLGPAT--HGGTYRCFGSFR 182 (257)
T ss_dssp TCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCC---SSS--CCBEEEEEEECC--SCEEEEEEEECS
T ss_pred ccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccc---cCC--ceeEEEEecccc--cCEEEEEEEEcC
Confidence 46789999999998774 4688999987655322111000 000 013678888888 999999999864
No 491
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=98.85 E-value=1.5e-07 Score=44.22 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=49.1
Q ss_pred CceeeecCCCcEEEEEEeeecc---cceeEEeeccc----eeEe-c--------ccceEEEEeccccceEEEEEEEccCC
Q psy4613 8 NQLVGAPIDTDVTLECYVEAYP---KSINYWVRDQG----DMVI-S--------SERYEVESISRSIFDFKMRLTIKKIT 71 (96)
Q Consensus 8 ~~~~~~~~g~~~~l~c~~~~~~---~~~~~w~~~~~----~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~~~ 71 (96)
+..+.+..|++++|.|...... ...+.|++... ..+. . ..++...... ......|.|.+++
T Consensus 7 p~~v~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~l~ 83 (117)
T 1xed_A 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP---ENGTFVVNIAQLS 83 (117)
T ss_dssp CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEET---TTTEEEEEECSCC
T ss_pred CCeEEEecCCCEEEEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecC---CCCEEEEEECCCC
Confidence 4567789999999999987531 45789998642 1111 1 1233322111 1124679999999
Q ss_pred CCCCeeEEEEEecC
Q psy4613 72 KYDLGSYKCIAKNS 85 (96)
Q Consensus 72 ~~d~g~y~c~~~~~ 85 (96)
.+|+|.|.|.+...
T Consensus 84 ~~DsG~Y~C~v~~~ 97 (117)
T 1xed_A 84 QDDSGRYKCGLGIN 97 (117)
T ss_dssp GGGCEEEEEEESCG
T ss_pred hHHCEEEEEEEEeC
Confidence 99999999998754
No 492
>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D
Probab=98.85 E-value=6e-08 Score=45.82 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=50.9
Q ss_pred EEecCceeeecCCCcEEEEEEeeecc--cceeEEeeccc----eeE-e--c-----------ccceEEEEeccccceEEE
Q psy4613 4 IHVPNQLVGAPIDTDVTLECYVEAYP--KSINYWVRDQG----DMV-I--S-----------SERYEVESISRSIFDFKM 63 (96)
Q Consensus 4 ~~~~~~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~----~~~-~--~-----------~~~~~~~~~~~~~~~~~~ 63 (96)
+..+ ..+.+..|+++.|.|.+.+.. ...+.|++... ..+ . . ..++...... .....
T Consensus 4 v~qp-~~~~~~~G~~vtL~C~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~ 79 (123)
T 2wzp_D 4 LQES-GGGLVQAGGSLRLSCTASRRTGSNWCMGWFRQLAGKEPELVVALNFDYDMTYYADSVKGRFTVSRDS---GKNTV 79 (123)
T ss_dssp EEEE-ECEEEETTCCEEEEEEESSCCSSSEEEEEEECCSSSSCEEEEEEETTTTEEEECGGGTTTEEEEEET---TEEEE
T ss_pred EECC-CCEEEcCCCcEEEEEEecCCCccCcEEEEEEECCCCCCEEEEEEEcCCCceecCcccCCCEEEEEeC---CCCEE
Confidence 3443 356789999999999987532 56799998531 111 1 0 1233322110 11346
Q ss_pred EEEEccCCCCCCeeEEEEEecC
Q psy4613 64 RLTIKKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 64 ~l~i~~~~~~d~g~y~c~~~~~ 85 (96)
.|.|.+++.+|+|.|.|.+.+.
T Consensus 80 ~L~I~~~~~~Dsg~Y~C~~~~~ 101 (123)
T 2wzp_D 80 YLQMNSLKPEDTAIYYCAARSG 101 (123)
T ss_dssp EEEECSCCGGGCEEEEEEEEES
T ss_pred EEEECCCCHHHCEEEEEEEecC
Confidence 7999999999999999998865
No 493
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=98.85 E-value=1.6e-08 Score=51.32 Aligned_cols=82 Identities=13% Similarity=0.258 Sum_probs=51.4
Q ss_pred cCceeeecCCCcEEEEEEeeecccc---eeEEeeccceeEec-----ccceEEEEec----------cccceEEEEEEEc
Q psy4613 7 PNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVIS-----SERYEVESIS----------RSIFDFKMRLTIK 68 (96)
Q Consensus 7 ~~~~~~~~~g~~~~l~c~~~~~~~~---~~~w~~~~~~~~~~-----~~~~~~~~~~----------~~~~~~~~~l~i~ 68 (96)
.+..+.+..|+.+.|.|.+.+.+.+ .+.|++++...... .......... ........+|.|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~ 84 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR 84 (218)
T ss_dssp CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence 3456778999999999999887755 48899865332110 0000000000 0000012469999
Q ss_pred cCCCCCCeeEEEEEecCCCc
Q psy4613 69 KITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 69 ~~~~~d~g~y~c~~~~~~g~ 88 (96)
+++..|.|.|.|.+.+..+.
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~ 104 (218)
T 4frw_A 85 NAVQADEGEYECRVSTFPAG 104 (218)
T ss_dssp SCCGGGCEEEEEEEEEETTE
T ss_pred eccHHHCCceeEEEEeccCc
Confidence 99999999999998875554
No 494
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=98.85 E-value=3.8e-08 Score=50.49 Aligned_cols=75 Identities=16% Similarity=0.311 Sum_probs=50.3
Q ss_pred ceeeecCCCcEEEEEEeeecc--cceeEEeecc--cee--E-e------------cccceEEEEeccccceEEEEEEEcc
Q psy4613 9 QLVGAPIDTDVTLECYVEAYP--KSINYWVRDQ--GDM--V-I------------SSERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~--~~~--~-~------------~~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
..+.+..|+.+.|.|.+.+.+ .+.+.|++.. ... + . ...++.+..... .....|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~~L~I~~ 84 (215)
T 1c5d_H 8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS---KSQVFLKMNS 84 (215)
T ss_dssp CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT---TTEEEEEESS
T ss_pred CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC---CceEEEEECC
Confidence 446788999999999998754 4689998753 111 1 0 012333221110 0235799999
Q ss_pred CCCCCCeeEEEEEecCC
Q psy4613 70 ITKYDLGSYKCIAKNSL 86 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~~~ 86 (96)
++..|.|.|.|.+.+..
T Consensus 85 v~~~D~G~Y~C~~~~~~ 101 (215)
T 1c5d_H 85 LQTEDTAIYFCTREDGW 101 (215)
T ss_dssp CCGGGCEEEEEEECCSS
T ss_pred CCcccCEEEEEEEecCC
Confidence 99999999999998753
No 495
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=98.85 E-value=4.3e-08 Score=50.19 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=53.3
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeecc--c--eeEe-c--------ccceEEEEeccccceEEEEEEEcc
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ--G--DMVI-S--------SERYEVESISRSIFDFKMRLTIKK 69 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~--~--~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 69 (96)
.+...+..+.+..|+.++|.|.+.......+.|++.. . ..+. . ..|+...... ......|.|.+
T Consensus 2 ~VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~---~~~~~sL~I~~ 78 (200)
T 3rgv_A 2 SVTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDK---GTTSFHLQKTS 78 (200)
T ss_dssp EEECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBT---TTTBCCEEESS
T ss_pred ccEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECC---CCCEEEEEEcC
Confidence 3556677888999999999999887555689999742 1 1111 1 1222222111 01235699999
Q ss_pred CCCCCCeeEEEEEec
Q psy4613 70 ITKYDLGSYKCIAKN 84 (96)
Q Consensus 70 ~~~~d~g~y~c~~~~ 84 (96)
++.+|+|.|.|.+..
T Consensus 79 l~~~DsG~Y~Ca~~~ 93 (200)
T 3rgv_A 79 VQEIDSAVYYCAANS 93 (200)
T ss_dssp CCSTTCEEEEEEEES
T ss_pred CcCccCCCEEEEecc
Confidence 999999999999864
No 496
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Probab=98.84 E-value=2.7e-08 Score=51.20 Aligned_cols=79 Identities=15% Similarity=0.299 Sum_probs=52.6
Q ss_pred eEEecCceeeecCCCcEEEEEEeeecccceeEEeeccc----eeEe-c-------ccceEEEEeccccceEEEEEEEccC
Q psy4613 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG----DMVI-S-------SERYEVESISRSIFDFKMRLTIKKI 70 (96)
Q Consensus 3 ~~~~~~~~~~~~~g~~~~l~c~~~~~~~~~~~w~~~~~----~~~~-~-------~~~~~~~~~~~~~~~~~~~l~i~~~ 70 (96)
.+...+..+.+..|+.+.|.|...+.....+.|++... ..+. . ..|+....... .....|.|.++
T Consensus 4 ~V~Q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~---~~~~sL~I~~l 80 (208)
T 4ei6_A 4 KVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKA---SLHVSLHIRDS 80 (208)
T ss_dssp CEEEECSEEEEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTT---TTBC-CEECSC
T ss_pred eEEEeCCEEEEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCC---CCEEEEEEEeC
Confidence 45566777889999999999998876556899997521 1111 1 12232221110 12357999999
Q ss_pred CCCCCeeEEEEEec
Q psy4613 71 TKYDLGSYKCIAKN 84 (96)
Q Consensus 71 ~~~d~g~y~c~~~~ 84 (96)
+.+|+|.|.|.+..
T Consensus 81 q~~DsG~Y~Ca~~~ 94 (208)
T 4ei6_A 81 QPSDSALYFCAASE 94 (208)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred cccCCCcEEEEEec
Confidence 99999999999864
No 497
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=98.84 E-value=2.8e-09 Score=61.63 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=53.5
Q ss_pred ceeeecCCCcEEEEEEe-eecccceeEEeeccceeEec-----------ccceEEEEeccccceEEEEEEEccCCCCCCe
Q psy4613 9 QLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVIS-----------SERYEVESISRSIFDFKMRLTIKKITKYDLG 76 (96)
Q Consensus 9 ~~~~~~~g~~~~l~c~~-~~~~~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g 76 (96)
..+.+..|+.+.|.|.+ .+.+.+.+.|++++...... ..+.... ....|.|.+++..|.|
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~i~~v~~~D~G 445 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVL--------PNGSLFLPAVGIQDEG 445 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEEC--------TTSCEEESSCCGGGCE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEc--------CCceEEEeccccccCe
Confidence 34567899999999998 77888899999875422100 1121111 1236999999999999
Q ss_pred eEEEEEecCCCce
Q psy4613 77 SYKCIAKNSLGEV 89 (96)
Q Consensus 77 ~y~c~~~~~~g~~ 89 (96)
.|.|.+.+..+..
T Consensus 446 ~Y~C~~~n~~~~~ 458 (581)
T 3o3u_N 446 IFRCQAMNRNGKE 458 (581)
T ss_dssp EEEEEEECTTSCE
T ss_pred EEEEEEEcCCCce
Confidence 9999999988866
No 498
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=98.84 E-value=4.5e-08 Score=55.23 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=48.8
Q ss_pred ecCCCcEEEEEEeeec-cc-ceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCce
Q psy4613 13 APIDTDVTLECYVEAY-PK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV 89 (96)
Q Consensus 13 ~~~g~~~~l~c~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~~ 89 (96)
+..|+.+.|.|.+.+. |. +.+.|++++..+... ...........+.....|.|..+...| |.|.|.+.+..+..
T Consensus 144 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~ 219 (457)
T 1hzh_H 144 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH--TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT 219 (457)
T ss_dssp CCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEE--EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE
T ss_pred ccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccce--EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc
Confidence 4689999999999886 54 689999886432100 000001111122234578999998888 99999999976653
No 499
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=98.84 E-value=1.6e-07 Score=48.26 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=48.9
Q ss_pred eeeecCCCcEEEEEEeeecc--cceeEEeeccc--ee--Ee----------------cccceEEEEeccccceEEEEEEE
Q psy4613 10 LVGAPIDTDVTLECYVEAYP--KSINYWVRDQG--DM--VI----------------SSERYEVESISRSIFDFKMRLTI 67 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~~~~--~~~~~w~~~~~--~~--~~----------------~~~~~~~~~~~~~~~~~~~~l~i 67 (96)
.+.+..|+++.|.|.+.+.+ .+.+.|++... .. .. ...++.+..... .....|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~---~~~~sL~I 85 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDS---KNTAFLQM 85 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGG---GTEEEEEE
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCC---CCEEEEEE
Confidence 46689999999999998643 56899987421 11 10 012333322110 12357999
Q ss_pred ccCCCCCCeeEEEEEecC
Q psy4613 68 KKITKYDLGSYKCIAKNS 85 (96)
Q Consensus 68 ~~~~~~d~g~y~c~~~~~ 85 (96)
.+++..|+|.|.|.+.+.
T Consensus 86 ~~v~~~DsG~Y~C~~~~~ 103 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGD 103 (221)
T ss_dssp CSCCGGGCEEEEEEEESC
T ss_pred CCCCHHHCEEEEEEEECC
Confidence 999999999999999875
No 500
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=98.84 E-value=2.1e-07 Score=50.08 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=50.6
Q ss_pred eeeecCCCcEEEEEEee-ecccceeEEeeccceeEecccceEEEEeccccceEEEEEEEccCCCCCCeeEEEEEecCCCc
Q psy4613 10 LVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGE 88 (96)
Q Consensus 10 ~~~~~~g~~~~l~c~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~c~~~~~~g~ 88 (96)
...+..+....+.|.+. +.|.+.+.|++++..+... . .........+...+.|.+......|.|.|.|.+.|..+.
T Consensus 126 ~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~-~--~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~ 202 (313)
T 4fqp_A 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT-S--QVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFE 202 (313)
T ss_dssp CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE-E--EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSS
T ss_pred ceEeecCceEEEEEEccCccCCcEEEeecCCcccccc-c--eeeeecccccccceeeeecccccccCeeEEEEEEccCcC
Confidence 34456677888889865 6788899999986554321 1 111111112223467888888999999999999987654
Done!