RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4613
(96 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 87.6 bits (217), Expect = 1e-22
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 2 PVIHVPNQLVG--APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P + +V A + VTL C + +P+ W +D G+ + + E
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEED---DEKHIFS 250
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
D LTI+ + K D Y CIA+N GE ++SI L
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 59.9 bits (145), Expect = 2e-12
Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 6/93 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISS-ERYEVESISRSIF 59
+ + + C V K + W G+ + + +R V
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
LTI D G YKC+ G +
Sbjct: 63 ----TLTIYNANIDDAGIYKCVVTAEDGTQSEA 91
Score = 58.3 bits (141), Expect = 8e-12
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFD 60
+ D + C V + W D+++ + R+ V S +
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY---- 156
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ I K D G+Y+C + + +
Sbjct: 157 ----LQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 80.4 bits (198), Expect = 2e-20
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESI--SRSI 58
P N A I L C + P S W +D G ++ ++ + S +
Sbjct: 108 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKD-GIVMPTNPKSTRAFSNSSYVL 166
Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L ++ D G Y C A+N G +S +
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Score = 65.4 bits (159), Expect = 1e-14
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+H V P + V L C + W DQGD + S
Sbjct: 5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64
Query: 62 KM--RLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ +T K +T+ D G+Y C+ G +++
Sbjct: 65 FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 75.2 bits (185), Expect = 2e-19
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 4 IHVP---NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
+H L D + V+ PK W + G ++ S+ + + +
Sbjct: 1 VHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTE 59
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ L + T + G Y IAKN G+ E I
Sbjct: 60 YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 74.6 bits (183), Expect = 3e-18
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 5/99 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + I L C + P S W +D G +++++ + + S F
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKD-GISMLTADAKKTRAFMNSSFT 163
Query: 61 FKMR---LTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ L +T +D G Y C A+N G S +
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 61.5 bits (149), Expect = 2e-13
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
++ V P + + L C + W QG + Y + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGST-TALVCYNSQITAPYADRV 60
Query: 62 KMR---LTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+T +T+ D G Y C+ G+ + ++
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 71.0 bits (174), Expect = 5e-17
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 2 PVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P I +P + A ++T C P+ W R+ G ++ +E+Y ++ +
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSNTE-- 153
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LT++ I D G Y C A N GE E L
Sbjct: 154 -----LTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184
Score = 47.1 bits (112), Expect = 4e-08
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 9/92 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMV-ISSERYEVESISRSIFD 60
D + C V + P W+ ++ IS R+ + + +
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN---- 58
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I I K D G Y+C +
Sbjct: 59 ----LQILNINKSDEGIYRCEGRVEARGEIDF 86
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 72.3 bits (177), Expect = 1e-16
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PVI Q V L+C P W D G + +++RY+V D
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDRYQVGQYVTVNGDV 488
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I + D G YKCIAK+ +G E S +L
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Score = 62.3 bits (151), Expect = 4e-13
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
V + + + L C + YP + W + ++ +
Sbjct: 249 VVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV----LNDRVKQV 304
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L IK D G Y C+ NS+G L
Sbjct: 305 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Score = 60.7 bits (147), Expect = 2e-12
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFD 60
+I + A + +TL C V +N W D G + +
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLD-GQAISEDLGITTSRVG----R 674
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LTI+ + G++ C A+N G + + L
Sbjct: 675 RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709
Score = 58.4 bits (141), Expect = 1e-11
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + +D +EC + +PK W + GD Y+ S +I
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE---YKDLKKSDNIRVE 771
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ L + I K + G Y C A N +G S++ +
Sbjct: 772 EGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 54.6 bits (131), Expect = 2e-10
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ C P W++D G + SE
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSESV------------ 390
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ + K D G Y+C +N E+S L
Sbjct: 391 ---LRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Score = 52.6 bits (126), Expect = 1e-09
Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 2/92 (2%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
PV P + T +EC P W+R G V S +
Sbjct: 39 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV- 97
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
F + Y C+A+N G + S
Sbjct: 98 FPPFRAEDYRQEVHAQVYACLARNQFGSIISR 129
Score = 51.1 bits (122), Expect = 3e-09
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I + + + C V YP W RD + + + +V + +
Sbjct: 528 PYIRQMEKKA-IVAGETLIVTCPVAGYPIDSIVWERD-NRALPINRKQKVFP-NGT---- 580
Query: 62 KMRLTIKKITKY-DLGSYKCIAKNSLGEVESS 92
L I+ + + D +Y C+AKN G
Sbjct: 581 ---LIIENVERNSDQATYTCVAKNQEGYSARG 609
Score = 40.3 bits (94), Expect = 2e-05
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVISSERYEVESISRSI 58
++C + ++ + W D+ + Y+ + +
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD----GKYL 194
Query: 59 FDFKMRLTIKKITKYD-LGSYKCIAKNSLGE 88
L I+++ D SY+C K+ L
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTG 225
Score = 35.3 bits (81), Expect = 0.001
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ + L + +A + G +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP 31
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 69.4 bits (170), Expect = 2e-16
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P V A V+++ P + W + D++ ++ Y+V F
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTR----SF 159
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ + + D G Y AKN G + ++ L
Sbjct: 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Score = 58.2 bits (141), Expect = 4e-12
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
++ TL C V +PK I W R +++ +Y ++ +L I +T
Sbjct: 16 VRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTD 71
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D Y+ A N G V + L
Sbjct: 72 DDATVYQVRATNQGGSVSGTASL 94
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 69.0 bits (169), Expect = 8e-16
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
PV V DV LEC ++ P ++ W +D + S ++Y++ S +
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVS-WHKD-KRELRSGKKYKIMSE-----N 245
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
F + I + D+G Y+C A N +G +
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281
Score = 66.7 bits (163), Expect = 5e-15
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + V + T +C+V W +D + Y++ ++ +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-NREIRPGGNYKM-----TLVEN 59
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LT+ K+TK D G Y C A N G+ S +L
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 93
Score = 61.3 bits (149), Expect = 7e-13
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
I D EC + P+ W +D + S ++ + +
Sbjct: 101 FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVESVA---- 155
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + ++ D G Y C A N+ G SS L
Sbjct: 156 -VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 187
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 64.8 bits (158), Expect = 2e-15
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 4 IHVP---NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
++ P L + + +E V P +W+ + G + S+ VE
Sbjct: 5 VYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHN-GQPLRESKIIHVEYYQEGEIS 63
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L K T Y+ G+Y IAKN LG +I
Sbjct: 64 EGC-LLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 64.4 bits (157), Expect = 3e-15
Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 10/96 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEV-ESISRSIFD 60
PVI +D L C P W +D + R + E+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV----- 63
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I+ D G Y CIA GE S +
Sbjct: 64 ----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 65.9 bits (161), Expect = 4e-15
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P Q + + V L+ V P + + RD G + SS +++
Sbjct: 104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVV-KFYRD-GAEIQSSLDFQISQ-----EG 156
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I + D G+Y A NS+G S+ L
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Score = 59.3 bits (144), Expect = 1e-12
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P P Q V + T E ++ +P W RD G ++ +S + S D
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRD-GQVISTSTLPG---VQISFSDG 61
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ +LTI +TK + G Y A N G+ S+ L
Sbjct: 62 RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL 96
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 64.0 bits (156), Expect = 5e-15
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P+ Q V LEC + A P + +W R+ + +++R + +
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKL-FWKRNNEMVQFNTDRISLYQDN----T 70
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++ L IK + K D G Y A N G + RL
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 66.0 bits (161), Expect = 6e-15
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PVI + V + C P YW+++Q + +S+ RY ++
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF------ 164
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I+ + D G Y+C+A+NS+G S
Sbjct: 165 ---LQIENSREEDQGKYECVAENSMGTEHSK 192
Score = 49.4 bits (118), Expect = 8e-09
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I Q G + + C P W ++ + + RY V I
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS-- 64
Query: 62 KMRLTIKKITKY-DLGSYKCIAKNSLGEVES 91
L I+ + D Y+C+A+N +G+ S
Sbjct: 65 --ILRIEPVRAGRDDAPYECVAENGVGDAVS 93
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 66.9 bits (163), Expect = 7e-15
Identities = 10/94 (10%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + + + C + + + +++ + ++ + +
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQS---DFHNNRYQK 243
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ L + ++ G+Y C+A N G+ +S+
Sbjct: 244 VLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277
Score = 53.0 bits (127), Expect = 6e-10
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 15/95 (15%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PVI + VTL C + W G Y S S
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGSVE----W---DGPPSPHWTLYSDGSSSI----- 52
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L+ T + G+Y+C ++I LY
Sbjct: 53 ---LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84
Score = 48.8 bits (116), Expect = 2e-08
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
+V Q V D D L C + VR +G ++ Y
Sbjct: 90 RPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP------- 142
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
TI + Y+C A +V S
Sbjct: 143 -WHGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 64.7 bits (158), Expect = 1e-14
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I P V L C PK W++ + + R V S S
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKG-DSALRENSRIAVLE-SGS---- 154
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I + K D G Y+C+AKNSLG S
Sbjct: 155 ---LRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 62.1 bits (151), Expect = 1e-13
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PVI P + V A ++ T C VE+YP+ W R++ + + RY + +
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL---- 63
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
LTI + D G Y C A N +G S
Sbjct: 64 ---LTILSVEDSDDGIYCCTANNGVGGAVES 91
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 66.8 bits (163), Expect = 1e-14
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + V + T +C+V W +D + Y++ ++ +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD-NREIRPGGNYKM-----TLVEN 251
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LT+ K+TK D G Y C A N G+ S +L
Sbjct: 252 TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Score = 66.4 bits (162), Expect = 1e-14
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PV V DV LEC ++ P W +D + S ++Y++ S +F
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD-KRELRSGKKYKIMSE-----NF 438
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ I + D+G Y+C A N +G +
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI 472
Score = 63.3 bits (154), Expect = 2e-13
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P P + V A I +TL+C V+ P+ W ++ + S+ Y++ +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKE-HTKLRSAPAYKM-----QFKNN 59
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I K+ D+G Y C A+NS+G V SS L
Sbjct: 60 VASLVINKVDHSDVGEYTCKAENSVGAVASSAVL 93
Score = 62.1 bits (151), Expect = 4e-13
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + +V L+ +E W +D+G++V S+ + +
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYS-----EN 532
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + + G Y C KN G E L
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
Score = 60.6 bits (147), Expect = 1e-12
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
I D EC + P+ W +D + S ++ + +
Sbjct: 293 FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVESVA---- 347
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + ++ D G Y C A N+ G SS L
Sbjct: 348 -VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSL 379
Score = 59.0 bits (143), Expect = 5e-12
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + V + V EC + W +D G+++ + I
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKD-GELLKDDANLQTSFIHNVA--- 157
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I + + +G Y C A N LG SS +L
Sbjct: 158 --TLQILQTDQSHVGQYNCSASNPLGTASSSAKLT 190
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A
{Homo sapiens}
Length = 291
Score = 66.0 bits (161), Expect = 1e-14
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + V + C P+SI W QG+ +IS++R V
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESI-DWYNPQGEKIISTQRVVV-----QKEGV 58
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ RLTI D G Y+C A ++ G+ + +
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEA 89
Score = 65.6 bits (160), Expect = 2e-14
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 2 PVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P I +P + A ++T C P+ W R+ G ++ +E+Y ++ +
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSNTE-- 249
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LT++ I D G Y C A N GE E L
Sbjct: 250 -----LTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Score = 49.8 bits (119), Expect = 8e-09
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFD 60
D + C V + P W+ ++ S+ R+ + + + +
Sbjct: 99 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNN--- 154
Query: 61 FKMRLTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95
L I I K D G Y+C + + GE++ +
Sbjct: 155 ----LQILNINKSDEGIYRCEGRVEARGEIDFRDII 186
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 62.4 bits (152), Expect = 1e-14
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P+I +D L+C P + W+++ R ++
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT----- 63
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L IK + D G+Y C+A +S GE S L
Sbjct: 64 ---LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 62.3 bits (152), Expect = 1e-14
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P V DV + V+ PK + W+R+ V +R E +
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV-SWLRN-RQPVRPDQRRFAEEAEGGLC- 62
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
RL I + D G Y C A N G + RL
Sbjct: 63 ---RLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 62.3 bits (152), Expect = 1e-14
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
++ V C +E Y +S W + +SE+YE+ D
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-VRQLENSEKYEITY-----ED 55
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L +K ITK D G+Y+C N GE S L+
Sbjct: 56 GVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 62.4 bits (152), Expect = 1e-14
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P I + I + + C P I W +D + ++ ++ +R+
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIM-WFKD-NETLVEDSGIVLKDGNRN--- 65
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
LTI+++ K D G Y C A + LG +
Sbjct: 66 ----LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 62.4 bits (152), Expect = 2e-14
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P + V + L+C V P + W + G + +SER +
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVV-WEKG-GQQLAASERLSFPAD-----G 66
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ L + D G Y C A+N+ GE ++ +
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 62.3 bits (152), Expect = 2e-14
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I + V L V W++ + SE +VE+ +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESEHMKVEN-----SEN 61
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+LTI + G Y + +N LG ++ + L
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 65.6 bits (160), Expect = 2e-14
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + V A T V LEC+ P W R G + R +
Sbjct: 206 KIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI------ 259
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I + D GSY+C+A+NS G+ + +L
Sbjct: 260 ---LEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 62.5 bits (152), Expect = 3e-13
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + ++ V EC PK W+++ GD +++ +R ++E +
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN-GDPLLTRDRIQIEQGT------ 348
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I + D G Y+C+A+N G + SS L
Sbjct: 349 ---LNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Score = 45.6 bits (108), Expect = 3e-07
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 7 PNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
V + L C + W+ ++ + R+ + L
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN--------L 159
Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESS 92
I K+ K D+G+Y C+ N++ +
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVL 186
Score = 45.6 bits (108), Expect = 3e-07
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY-D 74
+ V L C V+ PK W + G V + + S L I K D
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLN-GTDVDIGMDFRYSVVDGS-------LLINNPNKTQD 74
Query: 75 LGSYKCIAKNSLGEVES 91
G+Y+CIA NS G + S
Sbjct: 75 AGTYQCIATNSFGTIVS 91
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 63.7 bits (155), Expect = 2e-14
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 2 PVIHVPNQL--VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P I +P + A ++T C P+ W R+ G ++ +E+Y ++ +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN-GKLIEENEKYILKGSNTE-- 59
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LT++ I D G Y C A N GE E L
Sbjct: 60 -----LTVRNIINSDGGPYVCRATNKAGEDEKQAFL 90
Score = 60.6 bits (147), Expect = 5e-13
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVIS-SERYEVESISRSIF 59
+I + N+ + VTL C E P I W R + ++ I
Sbjct: 97 HIIQLKNETT--YENGQVTLVCDAEGEPIPEI-TWKRAVDGFTFTEGDKSLDGRIEVKGQ 153
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L IK + D G Y C A + +G + S+ L
Sbjct: 154 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.2 bits (151), Expect = 3e-14
Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN-YWVRDQGDMVISSE-RYEVESISRSIF 59
P+I A ++C++ + P W + + + RY VE+IS
Sbjct: 15 PIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-E 72
Query: 60 DFKMRLTIKKITKYDLG-SYKCIAKNSLGEVESSIRLY 96
LTI I + D Y C A NS G IRL
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 63.5 bits (154), Expect = 3e-14
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVI-----SSERYEVESIS 55
P + L C E+ P ++ W + S R+ V S
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 56 RSIFDFKMRLTIKKIT-KYDLGSYKCIAKNSLGEVESSIRL 95
L I+ + + D G Y+C +S G ++ I L
Sbjct: 144 GR-----SELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Score = 40.8 bits (95), Expect = 1e-05
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 15/77 (19%)
Query: 13 APIDTDVTLECYVEAYPKSI--NYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI 70
+ + + L C + + + W++ +V+ + + K
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKG--GVVLKEDALPGQK-----------TEFKVD 56
Query: 71 TKYDLGSYKCIAKNSLG 87
+ G Y C+
Sbjct: 57 SDDQWGEYSCVFLPEPM 73
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 61.5 bits (150), Expect = 3e-14
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
PVI Q D+ P+ + W +D G + +Y++
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTA-IWTKD-GKAITQGGKYKLSED-----K 59
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I K D G Y C KNS G V SS +L
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 61.6 bits (150), Expect = 3e-14
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
I + + C + P ++ W+R G ++ +S R++V +
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVT-WLRK-GQVLSTSARHQVTTT-----K 67
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+K I + D G+Y + +NS G+ E+ L
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 64.9 bits (158), Expect = 4e-14
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 16 DTDVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
+ +V L+C V K + W +D + E+++ + D L I + +K D
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFK-------DGICTLLITEFSKKD 72
Query: 75 LGSYKCIAKNSLGEVESSIRL 95
G Y+ I K+ G+ +S ++L
Sbjct: 73 AGIYEVILKDDRGKDKSRLKL 93
Score = 62.6 bits (152), Expect = 3e-13
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
V+ +V + L C V P W+++ + S + + +
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-EKALASDDHCNL----KFEAGR 277
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
TI ++ D G Y + KN G S +
Sbjct: 278 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311
Score = 50.3 bits (120), Expect = 6e-09
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAY-PKSINYWVRDQGDMVISSERYEVESISRSIF 59
+ L + L +V Y W + G + S+R + I
Sbjct: 107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTGEQI- 164
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I + T D G Y + + ++ L
Sbjct: 165 ----WLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 63.2 bits (154), Expect = 4e-14
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 2 PVIHVPN---QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
P H + + + + L P W ++ +SE +E+
Sbjct: 101 PQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHG-QKLLQNSENITIENTEHYT 159
Query: 59 FDFKMRLTIKKIT-KYDLGSYKCIAKNSLGEVESSIRLY 96
L +K + K G YK N G V++ + +
Sbjct: 160 -----HLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
Score = 59.7 bits (145), Expect = 1e-12
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
+ L C + P W R G +I S +Y++ S R+ LT+ +
Sbjct: 19 TKLGEAAQLSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSDGRT-----HTLTVMTEEQ 72
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D G Y CIA N +GEVE+S +L
Sbjct: 73 EDEGVYTCIATNEVGEVETSSKL 95
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 60.8 bits (148), Expect = 5e-14
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 13 APIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKIT 71
++ V P + W + G V S + +++ + + L + +
Sbjct: 17 IDEGRFCRMDFKVSGLPAPDV-SWYLN-GRTVQSDDLHKMIVSEKGLH----SLIFEVVR 70
Query: 72 KYDLGSYKCIAKNSLGEVESSIRL 95
D G+Y C+AKN GE +++L
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQL 94
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 60.8 bits (148), Expect = 6e-14
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P + D L+C V P I W+ + + + E
Sbjct: 12 PSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRI-TWLLNGQPIQYARSTCEAGVAE----- 65
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ D G+Y C+A+N+LG+V S +
Sbjct: 66 ----LHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 61.3 bits (149), Expect = 7e-14
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 2 PVIHVPNQL---VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
P I +P L + + L + P+ W + + + R V +
Sbjct: 22 PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG--GAPLDTSRVHVRTS---- 75
Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
DF +++ + D G Y+ + + ++IR+
Sbjct: 76 -DFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 62.6 bits (152), Expect = 8e-14
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
I V + V A + +VTLEC+ P I W + + + S+
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIR-WRKV-LEPMPSTAEISTSGAV----- 166
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I I D G Y+C A+N G+ + R+Y
Sbjct: 167 ----LKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 46.4 bits (110), Expect = 9e-08
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 18 DVTLECYVEA-YPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75
+ L C +P ++Y W+ ++ + I+ ++ R + L I + D
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDK------RRFVSQTNGNLYIANVEASDK 78
Query: 76 GSYKCIAKNSLGEVESS 92
G+Y C +
Sbjct: 79 GNYSCFVSSPSITKSVF 95
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 64.1 bits (156), Expect = 9e-14
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
V A D LEC V YP W+R + + + S++Y + S
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN----- 276
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I +T D G+Y C+ + +S L
Sbjct: 277 ---LLISNVTDDDSGTYTCVVTYKNENISASAEL 307
Score = 62.2 bits (151), Expect = 4e-13
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + A D+ EC V P W+++ GD+VI S+ +++ S
Sbjct: 312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN-GDVVIPSDYFQIVGGSN---- 366
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I + K D G Y+C+A+N G +SS +L
Sbjct: 367 ----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
Score = 54.5 bits (131), Expect = 2e-10
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS--SERYEVESISRSIF 59
+ + A + V L+C V P +W ++Q D+ R V S +
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP-SGA-- 178
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I ++ D G Y+C A+N +
Sbjct: 179 -----LQISRLQPGDSGVYRCSARNPASTRTGN 206
Score = 41.4 bits (97), Expect = 8e-06
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
+V L C E+ W +D + + + + + + S
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGS--L 79
Query: 61 FKMRLTIKKITKYDLGSYKCIAK-NSLGEVES 91
+ + K D G Y+C A G + S
Sbjct: 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIIS 111
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 59.6 bits (145), Expect = 2e-13
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSE--RYEVESISRSI 58
P I + +T+ C P + W G + S E R+ +E+
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVT-WSCG-GRKIHSQEQGRFHIEN----- 58
Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
D L I + K D G Y N G +++ ++
Sbjct: 59 TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIH 96
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 63.1 bits (153), Expect = 2e-13
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
PV+ V + T+ C ++ S+ W R+ E+Y ++
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE-NSQTKLQEKYNSWHHGDFNYE 270
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ LTI D G + C A N+ G + L
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305
Score = 60.5 bits (146), Expect = 2e-12
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
+ + N V +V L EA+PK + W+ +S + S
Sbjct: 314 NIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYM-NRTFTDKWEDYPKSENESNIR 372
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ L + ++ + G+Y + NS + +Y
Sbjct: 373 YVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY 408
Score = 57.8 bits (139), Expect = 1e-11
Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDM------VISSERYEVESISR 56
++ +++ + L+C +P+ W G V+ + + S
Sbjct: 408 YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGP 467
Query: 57 SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
++ +I G+ +C A N +G+ +
Sbjct: 468 PFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFA 507
Score = 47.7 bits (113), Expect = 6e-08
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + ++ + D D + C + + QG + R+ I D
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRF--------IPDP 166
Query: 62 KMRLTIKKITK-YDLGSYKCIAKNSLGEVESS 92
K + IK + + Y C V S
Sbjct: 167 KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198
Score = 40.4 bits (94), Expect = 2e-05
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 21/95 (22%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P IH + + ++ L C + K W + D +++
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPGFVK----WTFEILDETNENKQN------------ 80
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+K + G Y C K+ L +SI ++
Sbjct: 81 --EWITEKAEATNTGKYTCTNKHGLS---NSIYVF 110
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 60.6 bits (147), Expect = 3e-13
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
+ +C VE YP W +D + V S ++++ + LTI ++
Sbjct: 53 VVEGSAARFDCKVEGYPDPEVMWFKD-DNPVKESRHFQIDYDE----EGNCSLTISEVCG 107
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D Y C A NSLGE + L
Sbjct: 108 DDDAKYTCKAVNSLGEATCTAEL 130
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 59.3 bits (144), Expect = 3e-13
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P + + VT C V PK I YW +D + S+ Y ++
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKI-YWFKDGKQISPKSDHYTIQRDLDGTC- 66
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L T D G+Y +A N G + + RL
Sbjct: 67 ---SLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 62.6 bits (152), Expect = 3e-13
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P A I +D+ C P+ W+RD G + S R EV
Sbjct: 295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEVSGGE------ 347
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L K+ D G Y+C+A+N G V +S L
Sbjct: 348 ---LRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Score = 61.4 bits (149), Expect = 8e-13
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 12/94 (12%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ A VTLEC+ P W + G E
Sbjct: 208 SIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE----------- 256
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ + D G+Y+C A+N G R+
Sbjct: 257 -PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Score = 44.8 bits (106), Expect = 5e-07
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFDFKMRLTIKKITKY- 73
+ VTL C A P + W + ++ + + RY + + L I K
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD---------LVISNPVKAK 72
Query: 74 DLGSYKCIAKNSLGEVES 91
D GSY+C+A N+ G V S
Sbjct: 73 DAGSYQCVATNARGTVVS 90
Score = 44.5 bits (105), Expect = 7e-07
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 7 PNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
V V C YP W+ ++ I ++ R + L
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADG------RRFVSQTTGNL 160
Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
I K DLG+Y C A + + + S+
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFS 190
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 61.4 bits (149), Expect = 3e-13
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P + P + V + C V AYP +I+ W RD G ++ SS ++ +
Sbjct: 20 PKLQGPVAVY-TWEGNQVNITCEVFAYPSATIS-WFRD-GQLLPSSNYSNIKIYNT---P 73
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + ++ D G+Y C A N +G+ L
Sbjct: 74 SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 61.4 bits (149), Expect = 3e-13
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I + QL T+ C P W +D V +S I + +
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD-FLPVDTSN--NNGRIKQLRSES 165
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I++ + D G Y+C+A NS G S+
Sbjct: 166 IGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Score = 51.0 bits (122), Expect = 3e-09
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + C P+ W + G V + +E S
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK-GKKVSNQRFEVIEFDDGSGS-- 63
Query: 62 KMRLTIKKI-TKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ + T D Y+C+A N++GE+ S RL
Sbjct: 64 --VLRIQPLRTPRDEAIYECVASNNVGEISVSTRL 96
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 62.1 bits (151), Expect = 5e-13
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + + + C V++ P + +W RD ++ + +++ S
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRD-KLVLPAKNTTNLKTYS---TGR 156
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
KM L I + D G Y C A N +G L
Sbjct: 157 KMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Score = 59.8 bits (145), Expect = 3e-12
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVES-ISRSIFD 60
+I + N+ + VTL C E P W R + ++ I
Sbjct: 3 HIIQLKNETT--YENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L IK + D G Y C A + +G + S+ L
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 95
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 58.1 bits (141), Expect = 5e-13
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 6/94 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I ++ + LE P W + V++
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG-DSGAALAPELLVDAK-----SS 56
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ + D G+YK KN LGE E+ +
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 62.1 bits (150), Expect = 5e-13
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I + I + + C P W +D + ++ ++ +R+
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD-NETLVEDSGIVLKDGNRN---- 721
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LTI+++ K D G Y C A + LG +
Sbjct: 722 ---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
Score = 57.5 bits (138), Expect = 2e-11
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
LV A + V + YP W ++ G + S+ + +
Sbjct: 331 AFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKN-GIPLESNHTIKAGHV------- 382
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LTI ++++ D G+Y I N + + + S +
Sbjct: 383 ---LTIMEVSERDTGNYTVILTNPISKEKQSHVV 413
Score = 56.3 bits (135), Expect = 5e-11
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRS---- 57
V+ P+ + + + L C + + ++ +
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ F LTI +T+ D G Y C A + L ++S +
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 322
Score = 55.1 bits (132), Expect = 1e-10
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + ++ +T + + C + W+ + S +R EV S F
Sbjct: 32 PRLSIQKDILTIKANTTLQITCRGQRDLD----WLWP-NNQSGSEQRVEVTECSDG--LF 84
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LTI K+ D G+YKC + + + +
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Score = 51.7 bits (123), Expect = 2e-09
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + V + C +++ R + R +D
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN-------RISWDS 181
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
K TI G C AK + +S + +
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Score = 51.3 bits (122), Expect = 3e-09
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 21/113 (18%)
Query: 4 IHVPNQLVGAPIDT-----DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
+ ++ P V+L C + W + G + E+ +
Sbjct: 547 VTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKL-GPQPLPIHVGELPTPVCKN 605
Query: 59 FDFKMR---------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
D + + +K + D G Y C+A++ + +
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Score = 44.0 bits (103), Expect = 1e-06
Identities = 21/126 (16%), Positives = 31/126 (24%), Gaps = 31/126 (24%)
Query: 2 PVIH---VPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRS 57
P I + + + T TL C V A P + W + + V +
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 58 IF---------------------------DFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90
K T+ YKC A N +G E
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540
Query: 91 SSIRLY 96
I +
Sbjct: 541 RVISFH 546
Score = 31.7 bits (71), Expect = 0.023
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 67 IKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++ + + C+ + S+ L
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL 29
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 58.5 bits (142), Expect = 5e-13
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 18 DVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
++C V P + W D G V +++ + L I+ +T D G
Sbjct: 26 LCRMDCKVSGLPTPDL-SWQLD-GKPVRPDSAHKMLVRENGVH----SLIIEPVTSRDAG 79
Query: 77 SYKCIAKNSLGEVESSIRL 95
Y CIA N G+ S+ L
Sbjct: 80 IYTCIATNRAGQNSFSLEL 98
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 58.4 bits (142), Expect = 5e-13
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P I Q +D V P W ++ G + S+R ++
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPEC-EWYKN-GVKIERSDRIYWYWPEDNVC- 62
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ +T D S A N GE S L
Sbjct: 63 ---ELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 60.2 bits (146), Expect = 6e-13
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + V + C P+SI+++ G+ +IS++R V+
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQ-GEKIISTQRVVVQKE-----GV 56
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ RLTI D G Y+C A ++ G+ + +
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEA 87
Score = 52.9 bits (127), Expect = 4e-10
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIFD 60
D + C V + P W+ ++ S+ R+ + + + +
Sbjct: 97 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA-NNN--- 152
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I I K D G Y+C + +
Sbjct: 153 ----LQILNINKSDEGIYRCEGRVEARGEIDFRDI 183
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 61.5 bits (149), Expect = 6e-13
Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 3/94 (3%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I + + + C N ++ + + + +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD---FQDNYYKK 243
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L++ + D G Y C+A N +G +++
Sbjct: 244 VRALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
Score = 53.4 bits (128), Expect = 5e-10
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 15/95 (15%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PVI + VTL C + W + ES +
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPIS----PYWTLDPESPGST---- 52
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
LT + T + G+Y+C ++I LY
Sbjct: 53 ---LTTRNATFKNTGTYRCTELEDPMAGSTTIHLY 84
Score = 46.9 bits (111), Expect = 8e-08
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
++ Q V + L C + + +R+ G V+ Y F
Sbjct: 90 HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVY--------FFS 141
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
I+K D +Y C + E S+
Sbjct: 142 PWRGFIIRKAKVLDSNTYVCKTMVNGRESTST 173
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 60.8 bits (147), Expect = 6e-13
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
LV P+ ++ L C E YPK+ W ++ +F+
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFN 175
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I + C + E + L
Sbjct: 176 VTSTLRINTT---TNEIFYCTFRRLDPEENHTAEL 207
Score = 38.1 bits (88), Expect = 1e-04
Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 17/99 (17%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEVESISRSIFD 60
+ VP L +++T+EC + + D I + E +
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 61 FKMR--------------LTIKKITKYDLGSYKCIAKNS 85
++ R L I + D G Y+C+
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG 102
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 58.2 bits (141), Expect = 7e-13
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM 63
+ +L P V C P W+++ G R + +
Sbjct: 11 EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIG----GYKVRNQHW 65
Query: 64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L ++ + D G+Y C+ +N G + + L
Sbjct: 66 SLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 61.3 bits (148), Expect = 8e-13
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 2 PVIHVP-NQLVGAPIDTDVTLECYVEAYPKSINYWVRD-----QGDMVISSERYEVESIS 55
PVI P N+ + + + + L C V I YW + + D V+ + Y VE+ +
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 56 RSIFDFKMR-LTIKKITKYDL-GSYKCIAKNSLGEVESSIRL 95
+ L I +I + C AKN+ G + I+L
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 53.2 bits (127), Expect = 6e-10
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 7 PNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRL 65
++ + + C + W +D +S+E+ + I K +L
Sbjct: 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ------ASRIHQHKEKL 64
Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
D G Y C+ +NS + I
Sbjct: 65 WFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94
Score = 40.5 bits (94), Expect = 2e-05
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 15/87 (17%)
Query: 14 PIDTDVTLECYVEAYPKSINY------WVRDQGDMVISSERYEVESISRSIFDFKMRLTI 67
P+ D L C + K+ N W +D +++ + + K RL +
Sbjct: 116 PVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---------KDRLIV 166
Query: 68 KKITKYDLGSYKCIAKNSLGEVESSIR 94
+ + G+Y C A + + I
Sbjct: 167 MNVAEKHRGNYTCHASYTYLGKQYPIT 193
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 60.9 bits (147), Expect = 8e-13
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 2/96 (2%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRD-QGDMVISSERYEVESISRSIF 59
PV+ VP T+ C ++ S+N W++ I+ ++ +
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ + LTI D G + C A N+ G + L
Sbjct: 249 ERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Score = 47.8 bits (113), Expect = 5e-08
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + + D+D + C + S + G + + + + +
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF--------VPNP 143
Query: 62 KMRLTIKKITK-YDLGSYKCIAKNSLGEVESS 92
K +TIK + + Y +C A+ + S
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSD 175
Score = 36.2 bits (83), Expect = 5e-04
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 20/95 (21%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P IH + ++L C + W + + +
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCIDPD---FVR-WTFK-------------TYFNEMVENK 55
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
K +K G+Y C N L SSI ++
Sbjct: 56 KNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVF 87
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 60.3 bits (146), Expect = 8e-13
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 16 DTDVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYD 74
+ +V L+C V K + W +D + E+++ + D L I + +K D
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFK-------DGICTLLITEFSKKD 182
Query: 75 LGSYKCIAKNSLGEVESSIRL 95
G Y+ I K+ G+ +S ++L
Sbjct: 183 AGIYEVILKDDRGKDKSRLKL 203
Score = 45.7 bits (108), Expect = 2e-07
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 18 DVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
V E + ++ + + +Y++ + + + ++K+ D G
Sbjct: 19 QVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRNTGI---IEMFMEKLQDEDEG 74
Query: 77 SYKCIAKNSLGEVESS 92
+Y ++ S+
Sbjct: 75 TYTFQLQDGKATNHST 90
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 61.1 bits (148), Expect = 9e-13
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I N D V L C E + +WV + S R ++ + +R+
Sbjct: 291 PFITSNNSNPVEDEDA-VALTCEPEIQNTTYLWWVN--NQSLPVSPRLQLSNDNRT---- 343
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
LT+ +T+ D+G Y+C +N L S
Sbjct: 344 ---LTLLSVTRNDVGPYECGIQNELSVDHSD 371
Score = 61.1 bits (148), Expect = 1e-12
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
N V C EA + +WV Q + S R ++ + +R+
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQS--LPVSPRLQLSNGNRT---- 521
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
LT+ +T+ D +Y C +NS+ S
Sbjct: 522 ---LTLFNVTRNDARAYVCGIQNSVSANRSD 549
Score = 60.7 bits (147), Expect = 1e-12
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
N V C E + +WV +Q + S R ++ + +R+
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQS--LPVSPRLQLSNGNRT---- 165
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
LT+ +T+ D SYKC +N + S
Sbjct: 166 ---LTLFNVTRNDTASYKCETQNPVSARRS 192
Score = 51.1 bits (122), Expect = 3e-09
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 17/94 (18%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ ++ L C+ + P W + G ++
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN-GIPQQHTQV------------- 605
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I KIT + G+Y C N +SI
Sbjct: 606 ---LFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
Score = 50.7 bits (121), Expect = 4e-09
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 17/94 (18%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ +++L C+ + P + W+ D G++ ++
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-GNIQQHTQE------------- 427
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I IT+ + G Y C A NS +
Sbjct: 428 ---LFISNITEKNSGLYTCQANNSASGHSRTTVK 458
Score = 47.3 bits (112), Expect = 7e-08
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ ++ L C+ + P + W + G S++
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVN-GTFQQSTQE------------- 249
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I IT + GSY C A NS + +
Sbjct: 250 ---LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT 281
Score = 41.1 bits (96), Expect = 1e-05
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 10/85 (11%)
Query: 18 DVTLECYVEAYPKSINYWVRDQ----GDMVISSERYEVESISRSIFDFKMR------LTI 67
+V L + W + + +I ++ + + L I
Sbjct: 16 EVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLI 75
Query: 68 KKITKYDLGSYKCIAKNSLGEVESS 92
+ I + D G Y S E +
Sbjct: 76 QNIIQNDTGFYTLHVIKSDLVNEEA 100
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 57.4 bits (139), Expect = 1e-12
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
V + + L C + +SIN W+RD G + S R +
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLRD-GVQLAESNRTRITG-------- 53
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ ++ D G Y C+ + G + +
Sbjct: 54 -EEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 60.5 bits (146), Expect = 1e-12
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
V DV L C +A P + Y W G +
Sbjct: 233 EVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSL-----------PKGVEAQ 281
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ I G+Y C A N +G + +
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Score = 41.3 bits (96), Expect = 9e-06
Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 5/79 (6%)
Query: 18 DVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ C P S+ W E R + +
Sbjct: 152 VLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN----PNGTVTVISRYRLVPSREAHQQ 207
Query: 77 SYKCIAKNSLGEVESSIRL 95
S CI + + S+ L
Sbjct: 208 SLACIVNYHMDRFKESLTL 226
Score = 38.2 bits (88), Expect = 1e-04
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 17/111 (15%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSERYEVESISRS 57
+ N + I TDV L C S+ W + + Y
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 58 IFDFKMR------------LTIKKITKYDLGSYKCIAKN-SLGEVESSIRL 95
+ ++ R + + ++ D G Y C G ES + L
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 60.8 bits (147), Expect = 1e-12
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 18 DVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+V L+C V K + W +D + E+++ + D L I + +K D G
Sbjct: 238 NVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFK-------DGICTLLITEFSKKDAG 289
Query: 77 SYKCIAKNSLGEVESSIRL 95
Y+ I K+ G+ +S ++L
Sbjct: 290 IYEVILKDDRGKDKSRLKL 308
Score = 53.5 bits (128), Expect = 5e-10
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P V + EC PKS W +D S R EVES
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKD-YVSTEDSPRLEVESK-----GN 56
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93
K ++T K + DLG Y C ++ G S +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYL 88
Score = 49.2 bits (117), Expect = 1e-08
Identities = 7/80 (8%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ + ++ + + +Y++ + + ++K+ D G
Sbjct: 124 QVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRN---TGIIEMFMEKLQDEDEG 179
Query: 77 SYKCIAKNSLGEVESSIRLY 96
+Y ++ S++ L
Sbjct: 180 TYTFQLQDGKATNHSTVVLV 199
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 60.7 bits (147), Expect = 2e-12
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
+ + + + ++L C + +P W + + ++ +
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRK----QAVVLNDRVKQ 267
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L IK D G Y C+ NS+G L
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302
Score = 56.9 bits (137), Expect = 3e-11
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ C P W++D G + SE
Sbjct: 308 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKD-GKAIGHSES------------- 353
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I+ + K D G Y+C +N E+S L
Sbjct: 354 --VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 52.2 bits (125), Expect = 1e-09
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
PV P + T +EC P W+R G V S +
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV- 62
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
F + Y C+A+N G + S
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIIS 93
Score = 38.4 bits (89), Expect = 9e-05
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQGDMVISSERYEVESISRSI 58
++C + ++ + W D+ + Y+ + +
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD----GKYL 159
Query: 59 FDFKMRLTIKKITKYD-LGSYKCIAKNSLG 87
L I+++ D SY+C K+ L
Sbjct: 160 VLPSGELHIREVGPEDGYKSYQCRTKHRLT 189
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 56.9 bits (138), Expect = 2e-12
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P I + + P + V++ P + W + G + S + +
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVK-WYHN-GVELQESSKIHYTNT-----S 61
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ L I D G+Y+ + N GE L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 59.5 bits (144), Expect = 2e-12
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
+ +L P V C P W+++ G R + + L
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKN-GKEFKQEHRIGG----YKVRNQHWSL 78
Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++ + D G+Y C+ +N G + + L
Sbjct: 79 IMESVVPSDKGNYTCVVENEYGSINHTYHL 108
Score = 58.8 bits (142), Expect = 3e-12
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRD-----QGDMVISSERYEVESISR 56
+ + DV C V + + W++ +V S
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178
Query: 57 SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + +T+ D G Y C N +G+ S L
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 60.3 bits (146), Expect = 2e-12
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 2 PVIHVPN---QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
P P D+ LEC P W + GD + S++ + E+ +++
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD--LPSDKAKFENFNKA- 276
Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I +++ D G Y C+A N +G + +I +
Sbjct: 277 ------LRITNVSEEDSGEYFCLASNKMGSIRHTISV 307
Score = 56.8 bits (137), Expect = 4e-11
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + D L C PK W+ + G+ + S+ ++
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVN-GEPLQSAPPNPNREVAGD---- 367
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ + Y+C N G + ++ +
Sbjct: 368 --TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Score = 49.1 bits (117), Expect = 1e-08
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE-RYEVESISRSIF 59
P I + ++ +EC + P +W R+ I+ + R + S ++
Sbjct: 17 PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLV 76
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
+ + G Y+C A+N G S IRL
Sbjct: 77 ---IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL 110
Score = 42.2 bits (99), Expect = 4e-06
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 10/77 (12%)
Query: 18 DVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL- 75
+TL+C P + +W+ + + +R L + D+
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH--------NGDLYFSNVMLQDMQ 184
Query: 76 GSYKCIAKNSLGEVESS 92
Y C A+
Sbjct: 185 TDYSCNARFHFTHTIQQ 201
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 58.7 bits (142), Expect = 2e-12
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P I + D + C YP W + + V +
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKK-ENGVFEEISNSSGRFFIINKEN 151
Query: 62 KMRLTIKKI-TKYDLGSYKCIAKNSLGEVESSIRL 95
L I + D G Y+C A NS+G S L
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
Score = 55.6 bits (134), Expect = 3e-11
Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSI--NYWVRDQGDMVISSERYEVESISRSIF 59
P I +++ VTL+C + + ++ +YW ++ + +++ R ++
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKN--GVELTATRKNASNME---- 57
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
I K D G Y C+ + + +++ +
Sbjct: 58 -----YRINKPRAEDSGEYHCVY-HFVSAPKANATI 87
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 59.1 bits (143), Expect = 2e-12
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
V+ +V + L C V P W+++ + ++ ++ +
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKN-EKALAQTDHCNLKFEAGRTA-- 174
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
TI ++ D G Y + KN G S +
Sbjct: 175 --YFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
Score = 51.0 bits (122), Expect = 2e-09
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 18 DVTLECYVEAYPKSIN-YWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ L +V Y + + W + G + S+R + I L I + T D G
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTGEQI-----WLQINEPTPNDKG 72
Query: 77 SYKCIAKNSLGEVESSIRL 95
Y + + ++ L
Sbjct: 73 KYVMELFDGKTGHQKTVDL 91
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 60.5 bits (146), Expect = 2e-12
Identities = 11/95 (11%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
++ + + +TL+ V+A WV + +++++
Sbjct: 50 GTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFK-HSSLNCQPHFDLQN------RG 101
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ + I K+T+ G Y ++ +
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Score = 57.4 bits (138), Expect = 2e-11
Identities = 12/97 (12%), Positives = 25/97 (25%), Gaps = 12/97 (12%)
Query: 2 PVIHVP--NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
I+ ++ + +AYP+ W + +
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----------PCEQKGL 374
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
D ++ K+ G Y A+N + L
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 50.1 bits (119), Expect = 8e-09
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSER----YEVESISRSI 58
I Q++ + C+ + YP W + +E +R +
Sbjct: 411 NIRRKPQVLAEA--SASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKV 468
Query: 59 F-DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
F + T+ KC A NSLG +I L
Sbjct: 469 FGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILL 506
Score = 47.0 bits (111), Expect = 1e-07
Identities = 8/88 (9%), Positives = 23/88 (26%), Gaps = 3/88 (3%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
P +P + + + + C W + + + +
Sbjct: 230 PQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGE 88
+ + + + D G Y C + +
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQ 315
Score = 42.8 bits (100), Expect = 3e-06
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + + D L C E+ P+ I WV E
Sbjct: 141 LLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEES----------PA 189
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93
++ K + + +C A+N LG + +
Sbjct: 190 VVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 60.3 bits (146), Expect = 2e-12
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
PV ++ + A + C + P + ++ D+ + E + I+R
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPE----DRITRHNRTS 268
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
RL K D G Y C N +G+ + S++L
Sbjct: 269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303
Score = 59.2 bits (143), Expect = 4e-12
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFK 62
P +++ DVT+ C V P ++ W + +S R V
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNV-VWSHN--AKPLSGGRATVTDSG------- 361
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L IK + D G Y C A N G+ +
Sbjct: 362 --LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 56.8 bits (137), Expect = 3e-11
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 8/91 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
PV+ V + LEC +E + + Y W +D + S
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS--- 63
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
L + D G Y+C A+ G S
Sbjct: 64 ----LVFLRPQASDEGHYQCFAETPAGVASS 90
Score = 43.4 bits (102), Expect = 2e-06
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
L+C + AYPK + W + +++ + + R
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR--RITAG 158
Query: 61 FKMRLTIKKITK---YDLGSYKCIAKNSLGEVESS 92
L +TK D+ Y C AKN+ + E
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV 193
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 58.7 bits (142), Expect = 3e-12
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECY-VEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
V + LEC + P+ W++D G + + + SR
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIV 167
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I + D G+YKCIA+N +G ESS
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESS 199
Score = 48.3 bits (115), Expect = 2e-08
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 10/94 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE----RYEVESISRS 57
P I + + TL C VE P+ W +D G+ V ++E R + + +
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKD-GEPVSTNEKKSHRVQFKDGALF 68
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
T++ + D G Y C+AKN +G+ S
Sbjct: 69 F-----YRTMQGKKEQDGGEYWCVAKNRVGQAVS 97
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 59.3 bits (143), Expect = 4e-12
Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
++ + + +TL+ V+A WV + +++++
Sbjct: 50 GTVYEAAAVE-VDVSASITLQVLVDAPGNISCLWVFK-HSSLNCQPHFDLQNRGVVS--- 104
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ I K+T+ G Y ++ +
Sbjct: 105 ---MVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Score = 58.9 bits (142), Expect = 6e-12
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 12/97 (12%)
Query: 2 PVIHVPNQLVGAPID--TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
I+ N ID + +AYP+ W + +
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----------PCEQKGL 374
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
D ++ K+ G Y A+N + L
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 43.9 bits (103), Expect = 1e-06
Identities = 10/90 (11%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
P +P + + + + C W + + +E+ + S +
Sbjct: 230 PQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELE-NKALEEGNYFEMSTYSTNRTM 286
Query: 61 FKM-RLTIKKITKYDLGSYKCIAKNSLGEV 89
++ + + + D G Y C + +
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Score = 43.9 bits (103), Expect = 1e-06
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 11/94 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + + D L C E+ P+ I WV E
Sbjct: 141 LLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV-- 197
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ + +C A+N LG + +
Sbjct: 198 --------LHELFGTDIRCCARNELGRECTRLFT 223
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 56.0 bits (135), Expect = 5e-12
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
V + DVT C ++ P W R + S
Sbjct: 11 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI------- 63
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LTI+ + D G+Y C N + + L
Sbjct: 64 ----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 58.4 bits (141), Expect = 5e-12
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 6 VPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRL 65
+ +L+ P V C P W+++ G R + + L
Sbjct: 20 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFRGEHRIG----GIKLRHQQWSL 74
Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++ + D G+Y C+ +N G + + L
Sbjct: 75 VMESVVPSDRGNYTCVVENKFGSIRQTYTL 104
Score = 58.4 bits (141), Expect = 5e-12
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ---GDMVISSERYEVESI---S 55
+ A + +DV C V + + W++ G V V +
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 56 RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ +RL + +++ D G Y C A N +G E + L
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 57.5 bits (139), Expect = 6e-12
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVIS-SERYEVESISRSIFD 60
+ D + C V + W D+++ R+ V S +
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-NNY--- 156
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I+ I K D G+Y+C + + +
Sbjct: 157 ----LQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
Score = 56.4 bits (136), Expect = 2e-11
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISS-ERYEVESISRSIF 59
+ + + C V K + W G+ + + +R V
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND---- 58
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
D LTI D G YKC+ G +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA 91
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 58.7 bits (142), Expect = 7e-12
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + +V + C P W++ + + + V
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG-AEDLTPEDDMPVG--------- 255
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
R ++ D +Y C+A +SLG +E+ ++
Sbjct: 256 --RNVLELTDVKDSANYTCVAMSSLGVIEAVAQI 287
Score = 55.6 bits (134), Expect = 8e-11
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQG--DMVISSERYEVESISRSIF 59
P I + QL T+ C P W +D D S+ R +
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--- 165
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I+ + D G Y+C+A NS G SS
Sbjct: 166 -----LQIESSEETDQGKYECVATNSAGVRYSS 193
Score = 54.8 bits (132), Expect = 1e-10
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + C PK W + G V S +E +
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK-GKKVNSQRFETIEFDESAGA-- 63
Query: 62 KMRLTIKKI-TKYDLGSYKCIAKNSLGEVESSIRLY 96
L I+ + T D Y+C+A+NS+GE+ +L
Sbjct: 64 --VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 58.2 bits (141), Expect = 7e-12
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + ++ TL C V +PK I W R +++ +Y ++
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH-- 62
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+L I +T D Y+ A N G V + L
Sbjct: 63 --QLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95
Score = 56.3 bits (136), Expect = 4e-11
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 1 HPVIHVPNQLVG-----APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESIS 55
IH+P L G A V+++ P + W + D++ ++ Y+V
Sbjct: 99 PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG-QDLIDNNGHYQVIVTR 157
Query: 56 RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
F + + + D G Y AKN G + ++ L
Sbjct: 158 ----SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 58.2 bits (140), Expect = 9e-12
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 3/97 (3%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
+ QL A + V+ P W+ + G ++ + E + + +
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN-GSVLNETSFIFTEFLEPAANE 304
Query: 61 FKMR--LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + + T + G+Y +A N G+ +SI
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 341
Score = 58.2 bits (140), Expect = 1e-11
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + V + DV L C VE W+ + + + +
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLG---- 213
Query: 61 FKMRLTIKKIT-KYDLGSYKCIAKNSLGEVESSIRLY 96
LT+ +T + + C A+N +G E S+++
Sbjct: 214 ----LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 246
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 55.8 bits (134), Expect = 1e-11
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Query: 13 APIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEV---ESISRSIFDFKMRLT 66
+ D+T V+A W + + + S + E+ R + +
Sbjct: 19 VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78
Query: 67 IKKITKYDLGSYKCIAKNSLGEVESSIRL 95
I K G+Y+C S L
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 57.6 bits (138), Expect = 1e-11
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 15/109 (13%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF-- 59
V ++V D+T+ C + W +++ F
Sbjct: 137 NVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGI 196
Query: 60 -----DFKMR--------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ R L I+ D G C GE+++
Sbjct: 197 TWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 35.7 bits (81), Expect = 0.001
Identities = 20/124 (16%), Positives = 31/124 (25%), Gaps = 31/124 (25%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEA---YPKSINYWVRDQG---DMVISSERY-------- 49
+ + V V L C + + W++ + Y
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 50 --EVESISRSIFDFKMR----------LTIKKITKYDLGSYKCIAKNS-----LGEVESS 92
E +S S DF R L + + D G Y C G S
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124
Query: 93 IRLY 96
+ L
Sbjct: 125 VVLK 128
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 55.4 bits (133), Expect = 2e-11
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 9/91 (9%)
Query: 13 APIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMR------- 64
+ V L C P I W + + + +
Sbjct: 33 RWVGGSVELHCEAVGSPVPEI-QWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAST 91
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++I + + D G+Y+C A N +
Sbjct: 92 ISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 57.0 bits (137), Expect = 2e-11
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
V + TL C + P+ Y W G + +
Sbjct: 218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPL---PPFAVAQGAQ----- 269
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I+ + K + C N+LG ++ + +
Sbjct: 270 ----LLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 44.3 bits (104), Expect = 9e-07
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 19/112 (16%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-----WVRD------------QGDMVI 44
V+ P Q V + VTL CY++ + + W R QG
Sbjct: 2 VVVQAPTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 45 SSERYEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNS-LGEVESSIRL 95
S+R E + L + + D G+Y C+ G I L
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
Score = 34.7 bits (79), Expect = 0.002
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 6/97 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P Q V + C P + W D G M +S+ V
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQ---VPGFLSGTVT 174
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGE--VESSIRL 95
+ ++ D + C ++ E ++ L
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL 211
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 56.4 bits (136), Expect = 2e-11
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 10/92 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
V + +EC +P+ W +D + ER +
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK----- 166
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I K D G Y C+ N +GE ES
Sbjct: 167 ----LMITYTRKSDAGKYVCVGTNMVGERESE 194
Score = 48.3 bits (115), Expect = 2e-08
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 3 VIHVPNQLVGAPIDTDV------TLECYVEAYPK-SINYWVRDQGDMVISSERYEVESIS 55
P ++V P D V TL C E P +I W + G+ V + +
Sbjct: 5 QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI-EWYKG-GERVETDKDDPRSH-- 60
Query: 56 RSIFD----FKMRLTIKKITKYDLGSYKCIAKNSLGEVES 91
R + F +R+ + ++ D G Y C+A+N LGE S
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 57.3 bits (138), Expect = 2e-11
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM 63
+ +L+ P V C P W+++ G R + +
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN-GREFRGEHRIG----GIKLRHQQW 180
Query: 64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L ++ + D G+Y C+ +N G + + L
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212
Score = 54.6 bits (131), Expect = 2e-10
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ---GDMVISSERYEVESISRSI 58
+ A + +DV C V + + W++ G V V + +
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 59 FDFKMR----LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ + L++ +T D G Y C+A NS+G S L
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
Score = 48.5 bits (115), Expect = 3e-08
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 11/92 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
+ + V L C P WV+D G ++ SER V
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD-GTGLVPSERVLVGP------- 60
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
RL + + D G+Y C + + +
Sbjct: 61 --QRLQVLNASHEDSGAYSCRQRLTQRVLCHF 90
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 56.2 bits (135), Expect = 2e-11
Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQ-----GDMVISSERYEVESISRSI 58
+ P ++ + + V+LEC + + +R D + SER + + +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATL--LEEQL 62
Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
K I + D G Y+C+ + +
Sbjct: 63 PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTV 99
Score = 41.6 bits (97), Expect = 5e-06
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKM 63
+ + +++ P +V L C YP + W S R ++
Sbjct: 106 MRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIR-----TPEGLYQVTS 160
Query: 64 RLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L +K ++ C+ N+ + +S +
Sbjct: 161 VLRLKPQ---PSRNFSCMFWNAHMKELTSAII 189
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 54.9 bits (132), Expect = 2e-11
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 16 DTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFKMR---LTIKKIT 71
+ V+ P S+ W+ + V++ + + +R L + + T
Sbjct: 15 MHHWCIPFSVDGQPAPSL-RWLFN--GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPT 71
Query: 72 KYDLGSYKCIAKNSLGEVESSIRLY 96
+ G+Y +A N G+ +SI
Sbjct: 72 HVNNGNYTLLAANPFGQASASIMAA 96
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 53.9 bits (129), Expect = 3e-11
Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 6/85 (7%)
Query: 17 TDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEV---ESISRSIFDFKMRLTIKKI 70
+T V W + + + S + +S R+ + L I
Sbjct: 20 GSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79
Query: 71 TKYDLGSYKCIAKNSLGEVESSIRL 95
GSY+C S+ L
Sbjct: 80 QPAFTGSYRCEVSTKDKFDCSNFNL 104
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 53.6 bits (129), Expect = 4e-11
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ V + + + L C + +SIN W+RD G ++ S R +
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDDVQSIN-WLRD-GVQLVESNRTRITG-------- 59
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ ++ D G Y C+ + G + +
Sbjct: 60 -EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 53.6 bits (129), Expect = 4e-11
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 17/92 (18%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
+ V + VTL C V A P I +W++D + +
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQI-HWMKDGVPLPLPPSPV----------- 58
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L + +I D G+Y C+A +S + S
Sbjct: 59 ----LILPEIGPQDQGTYSCVATHSSHGPQES 86
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 56.3 bits (136), Expect = 5e-11
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 6/95 (6%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ Q V V C + P W+ + +V + +
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT--- 442
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L ++ D G+Y CIA N+ G L+
Sbjct: 443 ---LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 56.0 bits (135), Expect = 5e-11
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
A + +T+ C + + WV + V+S S+ L KK+
Sbjct: 258 AHLGDTLTIRCDTKQQGMTKV-WVSPSNEQVLSQGSNGSVSVRNGD------LFFKKVQV 310
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D G Y C A S+ L
Sbjct: 311 EDGGVYTCYAMGETFNETLSVEL 333
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 56.0 bits (135), Expect = 6e-11
Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75
C V A + W +D + S +Y LTI ++ D
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKD-DRELKQSVKYMKRY-----NGNDYGLTINRVKGDDK 550
Query: 76 GSYKCIAKNSLGEVESSIRL 95
G Y AKNS G E + L
Sbjct: 551 GEYTVRAKNSYGTKEEIVFL 570
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 54.8 bits (132), Expect = 6e-11
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 5/96 (5%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + V L C VE + WV+D + + Y S I
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG-- 60
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRLY 96
L++K + + D G Y C ++ S + L
Sbjct: 61 --FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94
Score = 51.0 bits (122), Expect = 2e-09
Identities = 13/92 (14%), Positives = 21/92 (22%), Gaps = 16/92 (17%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
P V + + P + L C P+ + W R +
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG-TTKIGGPA------------- 144
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ + C A N G S
Sbjct: 145 -PSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 53.2 bits (127), Expect = 9e-11
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRS--- 57
+ V+ P+ + + + L C + + ++ +
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 58 -IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ F LTI +T+ D G Y C A + L ++S +
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 55.2 bits (132), Expect = 1e-10
Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSERYEVESISR 56
H + + + I + C + ++ W G +I + ++
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGW-IIGLDFGVYSILTS 286
Query: 57 SIFDFKMRLTIKKITKYDLGS-YKCIAKNSLGEVESSIRL 95
S + L + +T+ +G+ Y C N + + +
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 48.7 bits (115), Expect = 2e-08
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 10/95 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
P +G + L C + N W ++ +++I +Y
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSG------- 181
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L I D G Y C +++ I +
Sbjct: 182 --QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
Score = 37.1 bits (85), Expect = 3e-04
Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 3/77 (3%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
+ +C + + + ++R + + L I T D
Sbjct: 46 PFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG--DLWIANYTSNDSHR 103
Query: 78 -YKCIAKNSLGEVESSI 93
Y C G+ I
Sbjct: 104 RYLCTVTTKNGDCVQGI 120
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 55.1 bits (133), Expect = 1e-10
Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE---RYEVESISRS 57
PVI P + L+C S+ W+ G ++ R V S
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSLTSV-SWITPNGTVMTHGAYKVRIAVLSDGT- 398
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L +T D G Y C+ NS+G +S L
Sbjct: 399 -------LNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 53.9 bits (129), Expect = 2e-10
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ V ++ P + +T+ C V A+P W+ +G + +
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKD---- 160
Query: 62 KMRLTIK---KITKYDLGSYKCIAKNSLGEVES 91
L++ + K C+ KN E
Sbjct: 161 -GSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
Score = 39.6 bits (92), Expect = 3e-05
Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 14/99 (14%)
Query: 11 VGAPIDTDVTLECY---VEAYPKSINYWVR----DQGDMVISSERYEVESISRSIFDFKM 63
V A + VTL Y V P+ W + ++ ++ + F +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 64 R-------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + G+Y C K EV L
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 54.5 bits (130), Expect = 2e-10
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 2 PVIHVPNQ--LVGAPIDTDVTLECYV----EAYPKSINYWVRD--QGDMVISSERYEVES 53
PVIH PN + ++ + C V ++ +W D + D +
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284
Query: 54 ISRSIFD--FKMRLTIKKITKYDLG-SYKCIAKNSLGEVESSIRL 95
D L+IKK+T DL SY C A+++ GEV + ++
Sbjct: 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Score = 42.9 bits (100), Expect = 2e-06
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
+ + W + D + +R I K L +
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENR-ISKEKDVLWFRPTLL 88
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D G+Y C+ +N+ + + L
Sbjct: 89 NDTGNYTCMLRNTTYCSKVAFPL 111
Score = 39.1 bits (90), Expect = 6e-05
Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79
++ Y + K W + ++ M L+ + G+Y
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKI----------QNFNNVIPEGMNLSFLIALISNNGNYT 193
Query: 80 CIAKNSLGEVESSIR 94
C+ +
Sbjct: 194 CVVTYPENGRTFHLT 208
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 51.6 bits (123), Expect = 3e-10
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS-INY-WVRDQGDMVISSERYEV--ESISRS 57
P I V + A +DV+ C + S + + W D + + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ ++ L ++ + G Y+C+ N G S
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 53.6 bits (129), Expect = 4e-10
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSE---RYEV-ESISR 56
P I + + L+C P S W+ G ++ + R V +
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT- 408
Query: 57 SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + D G Y C+ N G +S L
Sbjct: 409 --------LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 50.8 bits (122), Expect = 4e-10
Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 17/92 (18%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
I V + + L+C P W +++ + +++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQ-WFKNELPLTHETKKL----------- 51
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ + G+Y C N +S
Sbjct: 52 ----YMVPYVDLEHQGTYWCHVYNDRDSQDSK 79
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 52.9 bits (126), Expect = 5e-10
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKS--INYWVRDQGDM--VISSERYEVESISR 56
+ V+ P+ + + + L C W R
Sbjct: 105 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164
Query: 57 SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ F LTI +T+ D G Y C A + L ++S +
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 41.3 bits (96), Expect = 7e-06
Identities = 11/94 (11%), Positives = 23/94 (24%), Gaps = 7/94 (7%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ + V + C + + + + +D
Sbjct: 10 VSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRI------SWDS 62
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
K TI G C AK + +S + +
Sbjct: 63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 96
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 52.6 bits (126), Expect = 5e-10
Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 15/91 (16%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
I V + + L+C P W +++ + +++
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK------------- 165
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ + G+Y C N +S
Sbjct: 166 --LYMVPYVDLEHQGTYWCHVYNDRDSQDSK 194
Score = 51.0 bits (122), Expect = 2e-09
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 15/91 (16%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
I V + V L C +P W + ++ +
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------------- 65
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L + D G Y C N+ S
Sbjct: 66 --ELIFNAVHVKDAGFYVCRVNNNFTFEFSQ 94
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 52.4 bits (125), Expect = 7e-10
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P I D L+C + W + + + +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV---- 177
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+++K + G+Y C +N +G + +RL
Sbjct: 178 ----ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 52.4 bits (125), Expect = 7e-10
Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 22/114 (19%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSERY---------- 49
I P Q + L C P+ W+ D I +
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 50 --------EVESISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
V S + + + + D+G+Y+C K + G L
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL 116
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 52.8 bits (126), Expect = 8e-10
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKS----INYWVRDQGDMVISSERYEVESISRS 57
PVI P + + A + + +T+ C V + + +W + + + V R
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 58 IFDFK------MRLTIKKITKYDLGS-YKCIAKNSLGEVESSIRL 95
+ + L +T+ DL +KC+ N+L +
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 47.8 bits (113), Expect = 5e-08
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 5 HVPNQLVGAPIDTDVTLEC-------YVEAYPKSINYWVRDQGDMVISSERYEVESISRS 57
H + V L C + P+ W ++ + E
Sbjct: 24 HYKREFRLE--GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE------ETR 75
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++ L + + D G+Y C +N+ + SI L
Sbjct: 76 MWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIEL 113
Score = 45.8 bits (108), Expect = 2e-07
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 20 TLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSYK 79
L + W +D + +E++ L + + D G Y+
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKF-------LSVRGTTHLLVHDVALEDAGYYR 196
Query: 80 CIAKNSLGEVESSIRL 95
C+ + + +I
Sbjct: 197 CVLTFAHEGQQYNITR 212
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 50.7 bits (121), Expect = 2e-09
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 16/78 (20%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
+TL +G + + L++ ++ D G+
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------------LSVSQLELQDSGT 157
Query: 78 YKCIAKNSLGEVESSIRL 95
+ C + +VE I +
Sbjct: 158 WTCTVLQNQKKVEFKIDI 175
Score = 45.0 bits (106), Expect = 3e-07
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 11/94 (11%)
Query: 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERY-----------EVESISR 56
++V V L C +W ++ ++ +S
Sbjct: 2 KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 57 SIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVE 90
L IK + D +Y C ++ EV+
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 95
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 48.8 bits (117), Expect = 3e-09
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
DV L C + ++ W++D + S++Y+V L I+ + D G
Sbjct: 25 DVELRCELSRAGTPVH-WLKD-RKAIRKSQKYDVVCE-----GTMAMLVIRGASLKDAGE 77
Query: 78 YKCIAKNSLGEVE 90
Y C + S
Sbjct: 78 YTCEVEASKSTAS 90
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 50.4 bits (120), Expect = 4e-09
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 12/96 (12%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + V N V VTL C +I W+ + + +ER + +
Sbjct: 112 QPFLQVTNTTV--KELDSVTLTCLSNDIGANI-QWLFN-SQSLQLTERMTLSQNNSI--- 164
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
L I I + D G Y+C N + S SI+L
Sbjct: 165 ----LRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196
Score = 35.8 bits (82), Expect = 6e-04
Identities = 13/84 (15%), Positives = 21/84 (25%), Gaps = 10/84 (11%)
Query: 18 DVTLECYVEAYPKSINYWVRDQ-GDMVISSERYEVESIS---------RSIFDFKMRLTI 67
+V L + W + + R+ S R I L
Sbjct: 16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLF 75
Query: 68 KKITKYDLGSYKCIAKNSLGEVES 91
+ IT D+G Y +
Sbjct: 76 QMITMKDMGVYTLDMTDENYRRTQ 99
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 48.7 bits (116), Expect = 5e-09
Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFD 60
P I + TL C E P +I W + + + R +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI-EWYKGGERVETDKDDPRSH---RMLLP 65
Query: 61 ----FKMRLTIKKITKYDLGSYKCIAKNSLGEVES-SIRL 95
F +R+ + ++ D G Y C+A+N LGE S L
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASL 105
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 48.1 bits (115), Expect = 6e-09
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
TL C + + + W +++ ++Y + + L ++ + D G
Sbjct: 25 AATLRCVLSSVAAPVK-WCYG-NNVLRPGDKYSLRQEGA-----MLELVVRNLRPQDSGR 77
Query: 78 YKCIAKNSLGEVESSIRLY 96
Y C G+ +S L
Sbjct: 78 YSCSF----GDQTTSATLT 92
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 50.1 bits (119), Expect = 7e-09
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ V ++TL C V W + + E + + +
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT-DFLLDMPYHI 240
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ L I D G+Y C S+ + + +
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Score = 41.2 bits (96), Expect = 8e-06
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
V+ P + + + L C A + W R + E F
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSA---PVV-WERMSQEP-------PQEMAKAQDGTFS 50
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
LT+ +T D G Y C +S G
Sbjct: 51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDE 80
Score = 34.7 bits (79), Expect = 0.002
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 16/93 (17%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
+ T++T+ C V P+ + +GD+ + +D +
Sbjct: 97 PNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPV-----------PYDHQ 144
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ ++ SY C EV+S
Sbjct: 145 RGFSGI----FEDRSYICKTTIGDREVDSDAYY 173
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 49.8 bits (118), Expect = 9e-09
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 16/78 (20%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
+TL +G + + L++ ++ D G+
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQGGKT----------------LSVSQLELQDSGT 156
Query: 78 YKCIAKNSLGEVESSIRL 95
+ C + +VE I +
Sbjct: 157 WTCTVLQNQKKVEFKIDI 174
Score = 44.0 bits (103), Expect = 1e-06
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERY-----------EVESISRSIFDFKMRLT 66
V L C +W ++ ++ +S L
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70
Query: 67 IKKITKYDLGSYKCIAKNSLGEVE 90
IK + D +Y C ++ EV+
Sbjct: 71 IKNLKIEDSDTYICEVEDQKEEVQ 94
Score = 42.9 bits (100), Expect = 3e-06
Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 6 VPNQLVGAPIDTDVTLECYVEAYPKS---INYWVRDQGDMVISSERYEVESISRSIFDFK 62
P + L E S I + ++++ V + + + +
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKL-PLH 256
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ L G+ + G++ + L
Sbjct: 257 LTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Score = 30.5 bits (68), Expect = 0.060
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 20/82 (24%)
Query: 16 DTDVTLECYV--EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY 73
L C V PK + + + +S R +
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSK-----------------REKAVWVLNP 338
Query: 74 DLGSYKCIAKNSLGEVESSIRL 95
+ G ++C+ +S G+V +
Sbjct: 339 EAGMWQCLLSDS-GQVLLESNI 359
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 47.4 bits (113), Expect = 1e-08
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
T C + +W D + ++E E+++ LT++++ D G+
Sbjct: 30 SATFRCRISPANYEPVHWFLD-KTPLHANELNEIDAQP----GGYHVLTLRQLALKDSGT 84
Query: 78 YKCIAKNSLGEVESSIRL 95
A G+ +S L
Sbjct: 85 IYFEA----GDQRASAAL 98
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 48.4 bits (115), Expect = 2e-08
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 17 TDVTLECYVEA--YPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMR---LTIKKIT 71
TL C ++ P + +W+RD + ++ + D + L I +
Sbjct: 18 LTGTLRCQLQVQGEPPEV-HWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQ 76
Query: 72 KYDLGSYKCIAKNSLGEVES-SIRL 95
D G Y+C+ S +
Sbjct: 77 LSDTGQYQCLVFLGHQTFVSQPGYV 101
Score = 47.6 bits (113), Expect = 3e-08
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 14/92 (15%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
P + +T L C + P+ ++ W++D + ++ + +
Sbjct: 107 PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQD-AVPLATAPGHGPQR------- 158
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
L + + S+ C A N+ G S
Sbjct: 159 ---SLHVPGLN--KTSSFSCEAHNAKGVTTSR 185
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 45.8 bits (109), Expect = 3e-08
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
E E + W R G + +S +Y + + + LT++++ D GS
Sbjct: 25 PAVFEAETERAGVKVR-WQRG-GSDISASNKYGLATE-----GTRHTLTVREVGPADQGS 77
Query: 78 YKCIAKNSLGEVESSIRL 95
Y IA G + L
Sbjct: 78 YAVIA----GSSKVKFDL 91
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 48.3 bits (114), Expect = 3e-08
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 2 PVIHVPN--QLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
P + + P ++ T C P ++D + E V
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV-------- 420
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
T+ G+Y C A+++ GEV + +
Sbjct: 421 -----------TRDLEGTYLCRARSTQGEVTREVTV 445
Score = 34.5 bits (78), Expect = 0.003
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQGDMVISSERYEVESISRSIF 59
+ ++TL C VE P++ V +G+ + E E +
Sbjct: 88 RVELAPLPSWQPV--GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVT-- 143
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGE 88
T+ + ++ C + L
Sbjct: 144 -----TTVLVRRDHHGANFSCRTELDLRP 167
Score = 29.5 bits (65), Expect = 0.14
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 18/87 (20%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P +V T+VT++C EA+P++ +
Sbjct: 283 FPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGVPAQPLGPR-------------- 326
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLG 87
+L +K + + S+ C A +
Sbjct: 327 --AQLLLKATPEDNGRSFSCSATLEVA 351
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 45.8 bits (109), Expect = 4e-08
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
+ ++ L+C + W ++ G V S+R +V R +L I
Sbjct: 19 VNLGKEICLKCEISENIPGK--WTKN-GLPVQESDRLKVVQKGR-----IHKLVIANALT 70
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D G Y V ++
Sbjct: 71 EDEGDYVFAPDA--YNVTLPAKV 91
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 45.9 bits (109), Expect = 5e-08
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
V L C + W +D G V SE V+ R K RL + + D G
Sbjct: 27 RVVLTCELSRVDFPAT-WYKD-GQKVEESELLVVKMDGR-----KHRLILPEAKVQDSGE 79
Query: 78 YKCIAKNSLGEVESSIRL 95
++C V + +
Sbjct: 80 FECRT----EGVSAFFGV 93
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 47.4 bits (112), Expect = 5e-08
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 19/79 (24%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ T C P ++D G + +T+ G
Sbjct: 201 SQQTPMCQAWGNPLPELKCLKD-GTFPLPIGE------------------SVTVTRDLEG 241
Query: 77 SYKCIAKNSLGEVESSIRL 95
+Y C A+++ GEV + +
Sbjct: 242 TYLCRARSTQGEVTREVTV 260
Score = 34.3 bits (78), Expect = 0.003
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + P L +DT T+ C ++ +P S GD ++ +
Sbjct: 7 PQLVSPRVLE---VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 63
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ C E+ +
Sbjct: 64 VSVT-----AEDEGTQRLTCAVILGNQSQETLQTV 93
Score = 25.8 bits (56), Expect = 2.8
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 20/86 (23%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
P + + V T+VT++C K V Q R+
Sbjct: 101 PNVILTKPEV--SEGTEVTVKCEAHPRAKVTLNGVPAQP------------LGPRA---- 142
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLG 87
+L +K + + S+ C A +
Sbjct: 143 --QLLLKATPEDNGRSFSCSATLEVA 166
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 45.5 bits (108), Expect = 6e-08
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 11/79 (13%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
V + A PK W ++ G + S +Y E + L I D
Sbjct: 25 RVRFVVEL-ADPKLEVKWYKN-GQEIRPSTKYIFEHKGC-----QRILFINNCQMTDDSE 77
Query: 78 YKCIAKNSLGEVESSIRLY 96
Y A G+ + S L+
Sbjct: 78 YYVTA----GDEKCSTELF 92
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 44.7 bits (106), Expect = 2e-07
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
L C + W + + + +R+ + + L I+ + D G
Sbjct: 36 TAVLRCELSKMAPVE--WWKG-HETLRDGDRHSLRQDGA-----RCELQIRGLVAEDAGE 87
Query: 78 YKCIAKNSLGEVESSIRLY 96
Y C+ G+ +S L
Sbjct: 88 YLCMC----GKERTSAMLT 102
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 43.9 bits (104), Expect = 2e-07
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ A TL+C + W + + + RY ++
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSKVAPVE--WKKG-PETLRDGGRYSLKQDGT----- 60
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ L I ++ D G Y C+ G+ +S L
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLT 91
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 43.9 bits (104), Expect = 2e-07
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
C E +P + W + + +S +++ +RLTI + K D +
Sbjct: 25 TAVFTCKTE-HPAATVTWRKG-LLELRASGKHQPSQE-----GLTLRLTISALEKADSDT 77
Query: 78 YKCIAKNSLGEVESSIRLY 96
Y C G+ +S +L
Sbjct: 78 YTCDI----GQAQSRAQLL 92
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 44.7 bits (105), Expect = 2e-07
Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 23/102 (22%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMR------------ 64
+ L+ + P W + + R ++ + +
Sbjct: 34 NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGR 93
Query: 65 -----------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
T++ K D G Y KN +GE + ++ +
Sbjct: 94 VRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 135
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 45.4 bits (106), Expect = 3e-07
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQG------DMVISSERYEVE- 52
I +V + V + C SI YW +G +++ SE +
Sbjct: 331 ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ 390
Query: 53 -----SISRSIFDFKMRLTIKKITKYDLGSYKCIAKNSLG 87
S+ + + + ++T D G Y C+
Sbjct: 391 YEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL 430
Score = 44.6 bits (104), Expect = 8e-07
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 11/105 (10%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEA-YPKSINYWVRDQG---DMVISSERYEVE--SI 54
P + ++ + VT+ C + + + G +VI S Y +
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 55 SRSIFD-----FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIR 94
+ + I ++ D G Y C A + + +
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Score = 42.7 bits (99), Expect = 4e-06
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 3/85 (3%)
Query: 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI 70
+G + C + R ++ D + I +
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRI---LLNPQDKDGSFSVVITGL 297
Query: 71 TKYDLGSYKCIAKNSLGEVESSIRL 95
K D G Y C A + E S
Sbjct: 298 RKEDAGRYLCGAHSDGQLQEGSPIQ 322
Score = 41.5 bits (96), Expect = 9e-06
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 7/96 (7%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
V ++G + C +Y K YW + + + +
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEK---YWCKWNNTGCQALPSQDEGPSKAFVNC 502
Query: 61 ----FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ LT+ +T+ D G Y C K E++
Sbjct: 503 DENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETA 538
Score = 37.7 bits (86), Expect = 2e-04
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 19 VTLECYVE---AYPKSINYWVRDQGDM----VISSERYEVE------SISRSIFDFKMRL 65
V++ CY + YW R +ISSE Y +++ + +
Sbjct: 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77
Query: 66 TIKKITKYDLGSYKCIAKNSLGEVESSI 93
I ++++ D G YKC + + +
Sbjct: 78 NIAQLSQDDSGRYKCGLGINSRGLSFDV 105
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 43.1 bits (102), Expect = 4e-07
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
+C V K W ++ G V S+R + + R +L I + D G
Sbjct: 25 QAVFKCEVSD-EKVTGKWYKN-GVEVRPSKRITISHVGR-----FHKLVIDDVRPEDEGD 77
Query: 78 YKCIAKNSLGEVESSIRL 95
Y + + S +L
Sbjct: 78 YTFVPDG--YALSLSAKL 93
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 43.4 bits (102), Expect = 5e-07
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDM-------VISSERYEVESISRSIFDFKMRLTIKKI 70
+TL+C S W+ G V+ + +Y++ S + +T+ +
Sbjct: 18 TLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQL----SITVPNV 73
Query: 71 TKYDLGSYKCIAKNSLGEVESSIRL 95
T D G YKC+ S +++
Sbjct: 74 TLQDEGVYKCLH-YSDSVSTKEVKV 97
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 42.7 bits (101), Expect = 7e-07
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
+ L + + + W+++ ++ +S +Y ESI K LTI + + D +
Sbjct: 33 KIRLTVELADHDAEV-KWLKNGQEIQMSGSKYIFESIGA-----KRTLTISQCSLADDAA 86
Query: 78 YKCIAKNSLGEVESSIRLY 96
Y+C+ G + S L+
Sbjct: 87 YQCVV----GGEKCSTELF 101
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 42.3 bits (100), Expect = 7e-07
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 11/79 (13%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
E + + P W G + +S E+ + K L + G
Sbjct: 22 TAHFEIEL-SEPDVHGQWKLK-GQPLAASPDCEIIEDGK-----KHILILHNCQLGMTGE 74
Query: 78 YKCIAKNSLGEVESSIRLY 96
A N +S+ L
Sbjct: 75 VSFQAAN----TKSAANLK 89
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 42.8 bits (101), Expect = 8e-07
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 11 VGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKI 70
V A V L C + P + W +D G+ V+ S ++ D RL + +
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEVRWTKD-GEEVVESPALLLQKE-----DTVRRLVLPAV 75
Query: 71 TKYDLGSYKCIAKNSLGEVESSIRL 95
D G Y C + +S +
Sbjct: 76 QLEDSGEYLCEI----DDESASFTV 96
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.9 bits (103), Expect = 1e-06
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 17/109 (15%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEVESISRSIFD 60
+ P+ + A + D L C++ + WV V++ E R
Sbjct: 7 VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAP 66
Query: 61 FKMR--------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++ R L I +T D G Y C ++ ++ + L
Sbjct: 67 YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL 115
Score = 35.8 bits (82), Expect = 6e-04
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIF 59
+ + V D + LEC YP+ W ++G+ I + V + ++
Sbjct: 118 AALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE-NIPTVEAPVVADGVGLY 176
Query: 60 DFKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
+ ++ + C ++SL +E + +
Sbjct: 177 AVAASVIMRGSSG---EGVSCTIRSSLLGLEKTASIS 210
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 43.0 bits (101), Expect = 1e-06
Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 17/109 (15%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSERYEVESISRSIFD 60
+ P + A + + L C + + W R V+ R + + +
Sbjct: 9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68
Query: 61 FKMR--------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
++ R L I+ + D G Y C ++ + E+++ L
Sbjct: 69 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 42.0 bits (99), Expect = 1e-06
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 18 DVTLECYV-EAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ EC + W G V SS R++ R K L +++ D G
Sbjct: 25 SCSFECVLSHESASDPAMWTVG-GKTVGSSSRFQATRQGR-----KYILVVREAAPSDAG 78
Query: 77 SYKCIAKNSLGE 88
+ +
Sbjct: 79 EVVFSVRGLTSK 90
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 41.6 bits (98), Expect = 2e-06
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
TL C V + W +D G + SS + VE++ RL +++ + + G
Sbjct: 28 SATLSCEVAQAQTEVT-WYKD-GKKLSSSSKVRVEAVGC-----TRRLVVQQAGQAEAGE 80
Query: 78 YKCIAKNSLGEVESSIRL 95
Y C A G + S RL
Sbjct: 81 YSCEA----GGQQLSFRL 94
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.8 bits (98), Expect = 2e-06
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINY--WVRDQGDMVISSERYEVESIS----R 56
I + A + L+C++ + + W + + I + R
Sbjct: 6 TIETTGN-ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 57 SIFDFKMRLTIKKITKYDLGSYKC-IAKNSLGEVESSIRL 95
+ LT++ +T D G Y C G I L
Sbjct: 65 VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFL 104
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 42.9 bits (100), Expect = 2e-06
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQG-----DMVISSERYEVESI 54
V+ + + + + C +++ + W+ G + V+S +
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179
Query: 55 SRSIFDFKMR-------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+S+ F+ R + ++ + + D G Y C E +I L
Sbjct: 180 FQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Score = 40.2 bits (93), Expect = 2e-05
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 17/111 (15%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYV---EAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
P + V + + + V + C V E W+ + S S
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 59 F-DFKMR-------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
F+ R L ++ + K D G Y C + + +
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 42.2 bits (99), Expect = 3e-06
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 17/92 (18%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
++ ++V + L C+ + +D + E +
Sbjct: 88 LLLQASAEVVM--EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHN---------- 135
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
++I T D G+Y C K + ES
Sbjct: 136 ----ISITNATVEDSGTYYCTGKVWQLDYESE 163
Score = 33.3 bits (76), Expect = 0.005
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 17/96 (17%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
P + + +VTL C + + + W + G + +
Sbjct: 5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHN-GSLSEETNS------------ 51
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
L I D G YKC + + ++
Sbjct: 52 ---SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF 84
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 42.1 bits (99), Expect = 3e-06
Identities = 8/76 (10%), Positives = 16/76 (21%), Gaps = 15/76 (19%)
Query: 18 DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ L C+ + + ++ S +I + G
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPT--------------FSIPQANHSHSG 147
Query: 77 SYKCIAKNSLGEVESS 92
Y C S
Sbjct: 148 DYHCTGNIGYTLFSSK 163
Score = 36.3 bits (84), Expect = 4e-04
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 17/85 (20%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
V+ + + + VTL C P+S + W + G+++ + +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHN-GNLIPTHTQ------------ 51
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNS 85
K D G Y C +
Sbjct: 52 ---PSYRFKANNNDSGEYTCQTGQT 73
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 40.6 bits (95), Expect = 4e-06
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 12/85 (14%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDM-------VISSERYEVESISRSIFDFKMRLTIKKI 70
L C V+ + W + R E+ S +++ +
Sbjct: 23 TAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL----SISVSDV 78
Query: 71 TKYDLGSYKCIAKNSLGEVESSIRL 95
+ D G Y C ++ S L
Sbjct: 79 SLSDEGQYTCSL-FTMPVKTSKAYL 102
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 42.1 bits (98), Expect = 6e-06
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
T +C + + D+ + + + S F + TK
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSS---RRFIASFNVVNTTK 232
Query: 73 YDLGSYKCIAKNSLGEVESSI 93
D G Y+C+ + G S+
Sbjct: 233 RDAGKYRCMIRTEGGVGISNY 253
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 41.3 bits (96), Expect = 6e-06
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 18 DVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+T++C V YP +GD ++ S+ + ++ +S+ + +T + +
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167
Query: 77 SYKCIAKNSLGEVESSIR 94
C AK + E++S
Sbjct: 168 VLVCRAKLHIDEMDSVPT 185
Score = 40.1 bits (93), Expect = 2e-05
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 4 IHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFK 62
I P A I V+L C W R Q D ++ + + S
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTTST------ 55
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
LT+ ++ + SY C A ++E I++
Sbjct: 56 --LTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 41.1 bits (96), Expect = 9e-06
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 10/92 (10%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
PV++ VTL C + + + + + S + +
Sbjct: 171 APVLNASVTSP-LLEGNLVTLSCETKLLLQRPGLQLY---------FSFYMGSKTLRGRN 220
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
I + D G Y C A G V
Sbjct: 221 TSSEYQILTARREDSGLYWCEAATEDGNVLKR 252
Score = 41.1 bits (96), Expect = 9e-06
Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 15/79 (18%)
Query: 18 DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ L C+ N + R+ LTI K G
Sbjct: 99 PLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSN--------------LTILKTNISHNG 144
Query: 77 SYKCIAKNSLGEVESSIRL 95
+Y C + I +
Sbjct: 145 TYHCSGMGKHRYTSAGISV 163
Score = 40.7 bits (95), Expect = 1e-05
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 17/85 (20%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFD 60
VI + V + VTL C V P S + W + G +S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLN-GTATQTSTP------------ 48
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNS 85
I + D G Y+C S
Sbjct: 49 ---SYRITSASVNDSGEYRCQRGLS 70
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 40.6 bits (95), Expect = 1e-05
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 17/79 (21%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ TL C V +D G + S+R + K T
Sbjct: 116 INTTLTCEVMNGTDPELNLYQD-GKHLKLSQR----------------VITHKWTTSLSA 158
Query: 77 SYKCIAKNSLGEVESSIRL 95
+KC A N + + S +
Sbjct: 159 KFKCTAGNKVSKESSVEPV 177
Score = 38.7 bits (90), Expect = 6e-05
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 18 DVTLECYVEAYPKSIN--YWVRDQGDMVISSERYEVESI---SRSIFDFKMRLTIKKITK 72
D+ L+ I+ W + I+ R E E+ L IK +
Sbjct: 16 DINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKT 75
Query: 73 YDLGSYKCIAKNSLGEVESSIRL 95
D YK ++ G+
Sbjct: 76 DDQDIYKVSIYDTKGKNVLEKIF 98
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 41.0 bits (95), Expect = 1e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY-DL 75
T V L C YP S W + + E ++I + L++K+ ++
Sbjct: 129 TTVILTCPQ--YPGSEILWQHN-DKNIGGDEDD------KNIGSDEDHLSLKEFSELEQS 179
Query: 76 GSYKCIAKNSLGEVESS 92
G Y C + S E +
Sbjct: 180 GYYVCYPRGSKPEDANF 196
Score = 30.2 bits (67), Expect = 0.059
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 16 DTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDL 75
D V L C EA K+I W +D G M+ K + + K
Sbjct: 18 DGSVLLTCDAEA--KNIT-WFKD-GKMIGFLTED------------KKKWNLGSNAKDPR 61
Query: 76 GSYKCIAKNSLGE 88
G Y+C + +
Sbjct: 62 GMYQCKGSQNKSK 74
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 39.5 bits (92), Expect = 3e-05
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 15/76 (19%)
Query: 18 DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ L C+ ++++ D + I K T D G
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSD--------------FHIPKATLKDSG 150
Query: 77 SYKCIAKNSLGEVESS 92
SY C V S
Sbjct: 151 SYFCRGLVGSKNVSSE 166
Score = 34.5 bits (79), Expect = 0.002
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 19 VTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
VTL+C P+ + W + ++ S I T D G
Sbjct: 25 VTLKCQGAYSPEDNSTQWFHN-ESLISSQAS---------------SYFIDAATVNDSGE 68
Query: 78 YKCIAKNSLG 87
Y+C S
Sbjct: 69 YRCQTNLSTL 78
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 38.5 bits (90), Expect = 3e-05
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 7/79 (8%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
V + V + W+++ + ++ E + L + + D G
Sbjct: 25 RVEMAVEVSEEGAQVM-WMKN--GVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGR 81
Query: 78 YKCIAKNSLGEVESSIRLY 96
Y+ I + L
Sbjct: 82 YQVITNGG----QCEAELI 96
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 39.5 bits (92), Expect = 3e-05
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 15/76 (19%)
Query: 18 DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
+ L C+ ++++ + I K T D G
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSD--------------FYIPKATLKDSG 150
Query: 77 SYKCIAKNSLGEVESS 92
SY C V S
Sbjct: 151 SYFCRGLVGSKNVSSE 166
Score = 34.9 bits (80), Expect = 0.001
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 17/68 (25%)
Query: 19 VTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
VTL+C P+ + W + + S + S I T D G
Sbjct: 25 VTLKCQGAYSPEDQSTQWFHN---------ESLISSQASS-------YFIDAATVDDSGE 68
Query: 78 YKCIAKNS 85
Y+C + S
Sbjct: 69 YRCQTQLS 76
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 39.8 bits (92), Expect = 3e-05
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 2 PVIHVPNQLVGAPIDTDVTLEC-YVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P V ++ + VTL C VE + +WV S + R
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR--KPAAGSHPSRWAGMGR---- 60
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
RL ++ + +D G+Y C G ++ L
Sbjct: 61 ---RLLLRSVQLHDSGNYSCYRA---GRPAGTVHLL 90
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 37.9 bits (88), Expect = 8e-05
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 22/115 (19%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSE----RYEVESI 54
I P +++ L C P+ W+ D + +
Sbjct: 7 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIY 66
Query: 55 SRSIFDFKMR--------------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
D K R + + + D+G+Y+C K + G I L
Sbjct: 67 DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.5 bits (86), Expect = 9e-05
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 9 QLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGDMVISSE--RYEV-ESISRSIFDFK 62
V D + V W + + + S R+ ES + + +
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ L I K+ D G Y+ K +
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNI 112
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 38.3 bits (88), Expect = 1e-04
Identities = 18/97 (18%), Positives = 29/97 (29%), Gaps = 21/97 (21%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEAY---PKSINYWVRDQ---GDMVISSERYEVESIS 55
V Q TDV L V+ + NY + G+ VI + +
Sbjct: 93 IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ------- 145
Query: 56 RSIFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+TI++ T G Y + +S
Sbjct: 146 --------DITIQEFTADKNGVYTVKVWGESEDSAAS 174
Score = 35.2 bits (80), Expect = 0.001
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 20/95 (21%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYVEA---YPKSINY-WVRDQGDMVISSERYEVESISRS 57
+ + + TL V P ++ Y W +D +
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKD----------------DQP 46
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ LT+ T + GSYK +++
Sbjct: 47 HENNTATLTVADATSENAGSYKVTVQDTDTMTSVE 81
Score = 31.3 bits (70), Expect = 0.027
Identities = 13/95 (13%), Positives = 33/95 (34%), Gaps = 12/95 (12%)
Query: 13 APIDTDVTLECYVEA-----------YPKSINYWVRDQGDMVISSERYEV-ESISRSIFD 60
+ +++L V N++++ +G + + EV E++
Sbjct: 196 VALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT 255
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + T D + C+AK + ++ +
Sbjct: 256 PDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 36.9 bits (86), Expect = 1e-04
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 18 DVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGS 77
V LEC V ++ W ++ G+ +I + K L I+ TK D
Sbjct: 24 RVELECEVSEDDANVK-WFKN-GEEIIPGPKSRYRIRVE---GKKHILIIEGATKADAAE 78
Query: 78 YKCIAKNS 85
Y +
Sbjct: 79 YSVMTTGG 86
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 37.5 bits (86), Expect = 1e-04
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 13 APIDTDVTLECYVEAYPKSINYWVRDQGDM-------VISSERYEVESISRSIFDFKMRL 65
V L+C V+ + S W + R ++ + + +
Sbjct: 50 VVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHEL----SI 105
Query: 66 TIKKITKYDLGSYKC 80
+I + D G Y C
Sbjct: 106 SISNVALADEGEYTC 120
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 36.1 bits (83), Expect = 3e-04
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVE---AYPKSINYWVRDQGDMVISSERYEVESISRS 57
HP + P + G DV ++C + Y + + W+ G ++ +
Sbjct: 2 HPTLKTPESVTG-TWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60
Query: 58 IFDFKMR------------LTIKKITKYDLGSYKC 80
++ R L I + D Y C
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 37.0 bits (85), Expect = 3e-04
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 19/111 (17%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-----WVRD------------QGDMVIS 45
V+ P Q+ + VTL CY++ + + W R QG
Sbjct: 2 VVQAPTQVP-GFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 46 SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC-IAKNSLGEVESSIRL 95
S+R E + L + + D GSY C G I L
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWL 111
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 36.1 bits (83), Expect = 4e-04
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 8 NQLVGAPIDTDVTLECYVEAYPKSIN--YWVRDQGDMVISSERYEVESISRSIFDFKM-R 64
+ V + + L I+ W R + + + S +
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L IK +T+ D G+Y ++ G + L
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKAL 93
Score = 33.4 bits (76), Expect = 0.004
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 17/79 (21%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
++ TL C V + + + S + T+
Sbjct: 111 SNATLTCEVLEGTDVELKLYQG-KEHLRSLRQ----------------KTMSYQWTNLRA 153
Query: 77 SYKCIAKNSLGEVESSIRL 95
+KC A N + + +
Sbjct: 154 PFKCKAVNRVSQESEMEVV 172
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 6e-04
Identities = 5/14 (35%), Positives = 12/14 (85%)
Query: 83 KNSLGEVESSIRLY 96
K +L ++++S++LY
Sbjct: 19 KQALKKLQASLKLY 32
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 34.8 bits (80), Expect = 0.002
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P I P+ +V P + VT+ C + ++ Y + +G + E I++ F
Sbjct: 5 PFIWAEPHFMV--PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKF- 59
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
I + G Y CI + E S
Sbjct: 60 -----YIPDMNSRMAGQYSCIYRVGELWSEPS 86
Score = 24.8 bits (54), Expect = 5.7
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 11/69 (15%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
VT C + M + + + R + + +T G
Sbjct: 114 EKVTFYC-----------RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRG 162
Query: 77 SYKCIAKNS 85
+Y+C +
Sbjct: 163 TYRCFGSYN 171
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 34.4 bits (78), Expect = 0.002
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 17/108 (15%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSIN---------------YWVRDQGDMVISSER 48
+ VP LV V L+C QG + +
Sbjct: 4 LSVP-PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMH 62
Query: 49 YEVESISRSIFDFKMRLTIKKITKYDLGSYKCIAK-NSLGEVESSIRL 95
D + RL + + D Y C+ + + G E++ RL
Sbjct: 63 DTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARL 110
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 33.7 bits (77), Expect = 0.002
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 19/111 (17%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-----WVRDQ------------GDMVIS 45
V+ P Q+ G VTL CY++ + + W R G
Sbjct: 3 VVQAPTQVPGFL-GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 46 SERYEVESISRSIFDFKMRLTIKKITKYDLGSYKC-IAKNSLGEVESSIRL 95
S+R E + L + + D G+Y C G I L
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 33.7 bits (77), Expect = 0.003
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 8 NQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESIS----RSIFDFK- 62
+Q + + +VT K + W + D V E E + S R D
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEV-LWKKQ-KDKVAELENSEFRAFSSFKNRVYLDTVS 59
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSIRLY 96
LTI +T D Y+ + N ++ + +
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93
Score = 28.4 bits (63), Expect = 0.24
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 17/79 (21%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
++ TL C V QG + S R + T+
Sbjct: 106 SNATLTCEVLEGTDVELKL--YQGKEHLRSLR---------------QKTMSYQWTNLRA 148
Query: 77 SYKCIAKNSLGEVESSIRL 95
+KC A N + + +
Sbjct: 149 PFKCKAVNRVSQESEMEVV 167
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 34.1 bits (78), Expect = 0.003
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P I P+ +V P + VT+ C + ++ Y + +G + E I++ F
Sbjct: 8 PFIWAEPHFMV--PKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKF- 62
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
I + G Y CI + E S L
Sbjct: 63 -----YIPDMNSRMAGQYSCIYRVGELWSEPSNLL 92
Score = 25.3 bits (55), Expect = 3.4
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 18/85 (21%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
HP V + VT C + M + + + R
Sbjct: 108 HPGPEVIS-------GEKVTFYC-----------RLDTATSMFLLLKEGRSSHVQRGYGK 149
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNS 85
+ + +T G+Y+C +
Sbjct: 150 VQAEFPLGPVTTAHRGTYRCFGSYN 174
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 33.0 bits (75), Expect = 0.005
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 19 VTLEC-YVEAYPKSINYWVRDQG----DMVISSERYEVESISR--SIFDFK----MRLTI 67
+T++C Y + + +W R +++ + E E SI D + +T+
Sbjct: 20 LTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTM 79
Query: 68 KKITKYDLGSYKC 80
+ + K D +Y C
Sbjct: 80 EDLMKTDADTYWC 92
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 33.3 bits (76), Expect = 0.005
Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + P ++ VT+ C + ++ Y + + + +E +++ F
Sbjct: 6 PTLWAEPGSVI--SWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARF- 60
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+I +T+ G Y+C ++ +G + S
Sbjct: 61 -----SIPSMTEDYAGRYRCYYRSPVGWSQPS 87
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 32.6 bits (74), Expect = 0.006
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 6 VPNQLVGAPIDTDVTLECYVEAYPKSIN--YWVRDQ------GDMVISSERYEVE----- 52
+ + + VTL C+ ++ +S N W + ++ ++ +
Sbjct: 1 MSEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKST 60
Query: 53 --SISRSIFDFKMRLTIKKITKYDLGSYKC 80
++ + ++ LTI + D G Y C
Sbjct: 61 KYTLLGKVQFGEVSLTISNTNRGDSGVYCC 90
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 32.5 bits (74), Expect = 0.010
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
+ P ++ VT+ C + ++ Y + +G + +E +++ F
Sbjct: 6 ATLWAEPGSVI--SRGNSVTIRC--QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARF- 60
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+I +T++ G Y+C + G E S
Sbjct: 61 -----SIPSMTEHHAGRYRCYYYSPAGWSEPS 87
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.5 bits (71), Expect = 0.015
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 19 VTLECYVEAYPKSIN--YWVRDQG----DMVISSERYEVE------SISRSIFDFKMRLT 66
+T+ C W ++ +++S + +I +T
Sbjct: 28 LTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVT 87
Query: 67 IKKITKYDLGSYKC-IAKNSLGEVESSIRLY 96
+ + + D G Y C I + S V S+R Y
Sbjct: 88 MTDLREEDSGHYWCRIYRPSDNSVSKSVRFY 118
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 31.4 bits (71), Expect = 0.017
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 14/77 (18%)
Query: 18 DVTLECYVEAYPKSIN-YWVRDQ------GDMVISSERYEVESISRSIFDFKMR------ 64
VTL C Y W R Q + +I + + V S ++ K
Sbjct: 14 PVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDV 73
Query: 65 -LTIKKITKYDLGSYKC 80
LTI+ + D G Y C
Sbjct: 74 SLTIENSVESDSGLYCC 90
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 31.5 bits (70), Expect = 0.024
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P Q V ++ L C +E+ + W + ++ +
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPMESRHATY-SWRHKENVEQSCEPGHQSPNCI----- 553
Query: 61 FKMRLTIKKITKYDLGSYKCIAK-NSLGEVESSIRL 95
L I+ +T G Y C A+ S +L
Sbjct: 554 ----LFIENLTAQQYGHYFCEAQEGSYFREAQHWQL 585
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 30.5 bits (68), Expect = 0.031
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY-DL 75
T V L C YP S W + + + ++I + L++K+ ++
Sbjct: 22 TTVILTC--PQYPGSEILWQHN-------DKNIGGDEDDKNIGSDEDHLSLKEFSELEQS 72
Query: 76 GSYKCIAKNSLGEVESS 92
G Y C + S E +
Sbjct: 73 GYYVCYPRGSKPEDANF 89
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 30.7 bits (69), Expect = 0.036
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIF 59
+ + +QL + L C VE ++++ W G+ + S
Sbjct: 110 NIQVTNHSQLFQNMTCE-LHLTCSVEDADDNVSFRWEAL-GNTLSSQPN----------- 156
Query: 60 DFKMRLTIKKITKYDL-GSYKCIAKNSLGEVESSIRL 95
LT+ + Y CIA+N++ + S+
Sbjct: 157 -----LTVSWDPRISSEQDYTCIAENAVSNLSFSVSA 188
Score = 27.3 bits (60), Expect = 0.74
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
L + + D GSY+ SS L
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTL 102
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 29.9 bits (67), Expect = 0.049
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 18 DVTLECYVEAYPKSIN--YWVRDQ------GDMVISSERYEVESISRSIFDFK------- 62
VTL C + I W + +I + Y V S + K
Sbjct: 14 PVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGN 73
Query: 63 MRLTIKKITKYDLGSYKC 80
+ LTI+ D G Y C
Sbjct: 74 VSLTIENTVVGDGGPYCC 91
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.9 bits (67), Expect = 0.057
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 19 VTLEC-YVEAYPKSIN--YWVRDQGD----MVISSERYEVESISR--SIFDFK----MRL 65
V++ C Y YW R +ISSE Y + ++ +F +
Sbjct: 18 VSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVV 77
Query: 66 TIKKITKYDLGSYKC 80
I ++++ D G YKC
Sbjct: 78 NIAQLSQDDSGRYKC 92
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 29.4 bits (66), Expect = 0.067
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 13/83 (15%)
Query: 11 VGAPIDTDVTLECYVEAYPKS----INYWVRDQGDMVISSERYEVESISRSIFDFKMR-- 64
+ A + L C + + +DQ ++V++ E + R
Sbjct: 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63
Query: 65 -------LTIKKITKYDLGSYKC 80
L + + D G Y+C
Sbjct: 64 FDSDSWTLRLHNLQIKDKGLYQC 86
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 30.3 bits (67), Expect = 0.071
Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVE-AYPKSINYWVRDQGDMVISSERYEVESISRSIFDF 61
+ P +V + L C + A + W D + + + +
Sbjct: 9 QVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGL--DTSLGAVQSD---------TG 57
Query: 62 KMRLTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
+ LT++ + G+ C+ + +++L
Sbjct: 58 RSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL 91
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 29.5 bits (66), Expect = 0.099
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 18 DVTLECYVEAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMR-------LTIKK 69
+VTL W+ ++ +++ S+F ++ L I
Sbjct: 16 NVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYN 75
Query: 70 ITKYDLGSYKCIAKNSLGEVESSIRL 95
++K D G Y + E + I +
Sbjct: 76 VSKEDRGDYYMRMLHE-TEDQWKITM 100
Score = 29.1 bits (65), Expect = 0.17
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 17/79 (21%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
++ TL C V QG + S R + T+
Sbjct: 116 SNATLTCEVLEGTDVELKL--YQGKEHLRSLR---------------QKTMSYQWTNLRA 158
Query: 77 SYKCIAKNSLGEVESSIRL 95
+KC A N + + +
Sbjct: 159 PFKCKAVNRVSQESEMEVV 177
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 28.7 bits (64), Expect = 0.12
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 16/79 (20%)
Query: 18 DVTLEC-YVEAYPKSINY--WVRDQ------GDMVISSERYEVE-------SISRSIFDF 61
+ L C Y ++ W + + ++ ++ V + +
Sbjct: 11 NAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKG 70
Query: 62 KMRLTIKKITKYDLGSYKC 80
+ L IK +T D G+Y C
Sbjct: 71 DVSLIIKNVTLDDHGTYCC 89
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 29.2 bits (65), Expect = 0.16
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 11 VGAPIDTDVTLECYVEAYPKSIN----YWVRDQGDMVISSERYEVESIS----RSIFDFK 62
V + TL C + + YW + + MV++ ++ R+IFD
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQK-EKKMVLTMMSGDMNIWPEYKNRTIFDIT 62
Query: 63 --MRLTIKKITKYDLGSYKCIAKNSLGE 88
+ + I + D G+Y+C+ +
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKD 90
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 29.1 bits (65), Expect = 0.16
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + P LV + V L+C + ++ + +G + R E
Sbjct: 9 PSLLAHPGPLV--KSEETVILQC--WSDVMFEHFLLHREGM-FNDTLRLIGEHHDGV--- 60
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
K +I ++T+ G+Y+C + + S
Sbjct: 61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVS 92
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 28.5 bits (62), Expect = 0.32
Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 17/86 (19%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
V V V L C + + W DQ V+ S +
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGK------------ 51
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSL 86
LTI+ D G Y C +
Sbjct: 52 ---TLTIQVKEFGDAGQYTCHKGGEV 74
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like
receptor, structural genomics, PSI, protein structure
initiative; 2.10A {Mus musculus}
Length = 113
Score = 27.4 bits (61), Expect = 0.40
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 19 VTLEC-YVEAYPKSINYWVR--DQGDM--VISSERYEVESISR--SIFDFK----MRLTI 67
+T++C Y + YW + Q ++ ++ E SI D + +T+
Sbjct: 19 LTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTM 78
Query: 68 KKITKYDLGSYKC 80
+ + D G Y C
Sbjct: 79 EDLRMSDAGIYWC 91
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 27.5 bits (61), Expect = 0.51
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 16/95 (16%)
Query: 2 PVIHV-PNQLV--GAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSI 58
P + P ++ G+P VTL C + ++ Y + + R E + +
Sbjct: 6 PTLWAEPGSVITQGSP----VTLRC--QGGQETQEYRLYREKKTAPWITRIPQELVKKGQ 59
Query: 59 FDFKMRLTIKKITKYDLGSYKCIAKNSLGEV-ESS 92
F I IT G Y+C + ESS
Sbjct: 60 F------PIPSITWEHTGRYRCYYGSDTAGRSESS 88
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.1 bits (59), Expect = 0.57
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVES 91
L + + D GSY+C A +ES
Sbjct: 75 LHFEPVLPNDNGSYRCSANFQSNLIES 101
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 27.2 bits (60), Expect = 0.62
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 23/115 (20%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINY----WVR---DQGDMVISSERYEVESIS 55
V++ ++ GA + VTL C + + W D + + +
Sbjct: 2 VVYTDREVYGAV-GSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYI 60
Query: 56 RSIFDFKMR-------------LTIKKITKYDLGSYKCIAKNS--LGEVESSIRL 95
+ FK R + I + D G++ C KN + S + L
Sbjct: 61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion;
2.40A {Homo sapiens}
Length = 184
Score = 27.1 bits (60), Expect = 0.67
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 20/92 (21%)
Query: 2 PVIHV-PNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
P + P+ LV P++ VTL C QG + Y +E +S S +
Sbjct: 9 PSLQALPSSLV--PLEKPVTLRC---------------QGP--PGVDLYRLEKLSSSRYQ 49
Query: 61 FKMRLTIKKITKYDLGSYKCIAKNSLGEVESS 92
+ L I + + G Y+C +N S
Sbjct: 50 DQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPS 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.70
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 16/91 (17%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPK-SINYWVRDQGDMVISSERYEVESISRSIFDFK 62
+ VP E + + P+ + + D+ ++ E + + F
Sbjct: 20 LLVPTASFFI---ASQLQEQFNKILPEPTEGFAADDE----PTTP---AELVGK----F- 64
Query: 63 MRLTIKKITKYDLGSYKCIAKNSLGEVESSI 93
+ + +G + + L E E+
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 26.8 bits (59), Expect = 0.80
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 12/81 (14%)
Query: 17 TDVTLECYVEAYPKSIN----YWVRD---QGDMVISS-----ERYEVESISRSIFDFKMR 64
+ L C A + W RD G V + R + SR + D +
Sbjct: 23 SSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAE 82
Query: 65 LTIKKITKYDLGSYKCIAKNS 85
L I+ + +D Y C +
Sbjct: 83 LHIRDVRGHDASIYVCRVEVL 103
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 26.7 bits (58), Expect = 1.2
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 6/79 (7%)
Query: 17 TDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLG 76
T T+ C ++ V ++ + D +T D G
Sbjct: 204 TQGTVVCSLDGLFPVSEAQVH------LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEG 257
Query: 77 SYKCIAKNSLGEVESSIRL 95
+ + LG
Sbjct: 258 TQRLTCAVILGNQSQETLQ 276
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 26.0 bits (57), Expect = 1.3
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVESS 92
L I K+ K D +Y G +
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEW 102
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera;
TEM, beta-lactamase, MBP, allosteric regulation, zinc
bindin maltose binding; 2.29A {Escherichia coli} PDB:
4dxc_A
Length = 637
Score = 26.5 bits (58), Expect = 1.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 29 PKSINYWVRDQGDMVISSERYEVE 52
PK + ++ + GD V +R+E E
Sbjct: 501 PKELTAFLHNMGDHVTRLDRWEPE 524
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 26.0 bits (56), Expect = 1.6
Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 26/104 (25%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSIN---YWVRDQGD----MVISSERY------ 49
+ + V V L C + + W++ V
Sbjct: 6 TVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGL 65
Query: 50 ---EVESISRSIFDFKMR----------LTIKKITKYDLGSYKC 80
E +S S DF R L + + D G Y C
Sbjct: 66 GFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWC 109
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 26.0 bits (56), Expect = 1.8
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 19/83 (22%)
Query: 14 PIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKY 73
D V L C + W++D + + K + K
Sbjct: 120 RGDGSVLLTCGLTDKTIK---WLKDGSIISPLNAT-------------KNTWNLGNNAKD 163
Query: 74 DLGSYKCIAKNSLGEVESSIRLY 96
G+Y+C E + +++Y
Sbjct: 164 PRGTYQCQGAK---ETSNPLQVY 183
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 26.3 bits (56), Expect = 2.1
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 1 HPVIHVPNQLVGAPIDTDVTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFD 60
+ L+C ++ + +W G + S +Y ++
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKSNLARV-FWKFQNGVLKAESPKY-GLMGRKN--- 587
Query: 61 FKMRLTIKKITKYDLGSYKCIA 82
L I +++ D G Y+C++
Sbjct: 588 ----LLIFNLSEGDSGVYQCLS 605
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 25.6 bits (55), Expect = 2.1
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 65 LTIKKITKYDLGSYKCIAKNSLGEVES 91
L K I D GSY C + + S
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQVINS 107
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 26.0 bits (57), Expect = 2.2
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 19 VTLECYVEAYPKSINYWVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITKYDLGSY 78
V L+C+ + + + ++ S ++ K +I + G+Y
Sbjct: 136 VILQCWSDIMFEHF-FLHKEGISKDPSRLVGQIHD-----GVSKANFSIGPMMLALAGTY 189
Query: 79 KCIAKNSLGEVESS 92
+C + + S
Sbjct: 190 RCYGSVTHTPYQLS 203
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 25.4 bits (55), Expect = 3.4
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 8/56 (14%)
Query: 36 VRDQGDMVISSERYEVESISRS--------IFDFKMRLTIKKITKYDLGSYKCIAK 83
+ D V++ +R + ++R +M + D+ +
Sbjct: 87 CQQAVDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVA 142
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 25.2 bits (54), Expect = 3.5
Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 21/102 (20%)
Query: 4 IHVPNQLVGAPIDTDVTLECYVEAYPKSIN-------YWVRDQGDMVISSERYEVESISR 56
+ V + V + C +S YW RD + R
Sbjct: 4 LQVQKSVTVQE-GLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRR 62
Query: 57 SIFDFKMR-------------LTIKKITKYDLGSYKCIAKNS 85
+ + R L+I D GSY +
Sbjct: 63 VKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERG 104
Score = 24.8 bits (53), Expect = 4.6
Identities = 18/100 (18%), Positives = 27/100 (27%), Gaps = 21/100 (21%)
Query: 2 PVIHVPNQLVGAPIDTDVTLECYV----EAYPKSINYWVRDQGDMVISSERYEVESISRS 57
P IH L L C + EA P W + S
Sbjct: 127 PDIHFLEPLE---SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSP--LDPETTRSSE--- 178
Query: 58 IFDFKMRLTIKKITKYDLGSYKCIAKNSLGEV--ESSIRL 95
LT+ + + C K +V E +++L
Sbjct: 179 -------LTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune
system; 1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 24.4 bits (53), Expect = 5.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 65 LTIKKITKYDLGSYKC 80
L I + K D G+Y
Sbjct: 75 LHISNVRKEDKGTYYM 90
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 24.6 bits (53), Expect = 6.4
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 18/107 (16%)
Query: 6 VPNQLVGAPIDTDVTLECYV-EAYPKSIN----YWVR-----DQGDMVISSERYEVESIS 55
+ D VT+ C + + P +I W D+ V E+
Sbjct: 9 AGGTQITPLNDN-VTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFR 67
Query: 56 RSIFDFKMR-------LTIKKITKYDLGSYKCIAKNSLGEVESSIRL 95
R L + I + G Y+C + + + +++L
Sbjct: 68 PGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL 114
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 24.2 bits (52), Expect = 8.4
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 31/123 (25%)
Query: 3 VIHVPNQLVGAPIDTDVTLECYVEAYPKSINY----WVRDQGDM---VISSERYEVESIS 55
+ V ++ G V L C++ + W R +++ ++
Sbjct: 5 RVQVLPEVRGQL-GGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSF 63
Query: 56 RSIFDFKMR----------------------LTIKKITKYDLGSYKC-IAKNSLGEVESS 92
S R L + +T D G+Y C A G V
Sbjct: 64 PSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGM 123
Query: 93 IRL 95
L
Sbjct: 124 TWL 126
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 24.2 bits (52), Expect = 9.7
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 15 IDTDVTLECYV-EAYPKSINY-WVRDQGDMVISSERYEVESISRSIFDFKMRLTIKKITK 72
+ T C+V + K + W E +E S RLT+ +
Sbjct: 311 LRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLW 370
Query: 73 YDLGSYKCIAKN 84
S C +
Sbjct: 371 NAGTSVTCTLNH 382
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.398
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,400,701
Number of extensions: 70535
Number of successful extensions: 751
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 362
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)