BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4615
(477 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 126/196 (64%), Gaps = 13/196 (6%)
Query: 265 VPGGVGPMTVAM---LMKN---TILAAKHAVIYNISKSNVVDDMVASNSILY--RPGEKP 316
V G+ P+++A L N + A K ISKS+V+DD++ASN ILY + G+K
Sbjct: 337 VDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKV 396
Query: 317 DHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELS 376
DH +VIKY+ VGDSK A+DEY SE++LGGHN IS+HN CEDSLLA+PLI+DL+++ E
Sbjct: 397 DHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNRISIHNVCEDSLLATPLIIDLLVMTEFC 456
Query: 377 SRIQF-----TSPTVAEYTYFHPVLSILSYLCKAPLVPPGTPVVNALAQQRSCIENILRA 431
+R+ + ++ F+PVL+ LSY KAPL PG VN L +QR+ +EN LR
Sbjct: 457 TRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRL 516
Query: 432 CLSLPPENSMTLEHKL 447
+ LP +N + E +L
Sbjct: 517 LIGLPSQNELRFEERL 532
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/196 (45%), Positives = 122/196 (62%), Gaps = 13/196 (6%)
Query: 265 VPGGVGPMTVAM---LMKN---TILAAKHAVIYNISKSNVVDDMVASNSILY--RPGEKP 316
V G+ P+++A L N + A K ISKS+V+DD++ASN ILY + G+K
Sbjct: 337 VDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKLGKKV 396
Query: 317 DHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELS 376
DH +VIKY VGDSK A DEY SE+ LGGHN IS+HN CEDSLLA+PLI+DL++ E
Sbjct: 397 DHCIVIKYXKPVGDSKVAXDEYYSELXLGGHNRISIHNVCEDSLLATPLIIDLLVXTEFC 456
Query: 377 SRIQFT-----SPTVAEYTYFHPVLSILSYLCKAPLVPPGTPVVNALAQQRSCIENILRA 431
+R+ + ++ F+PVL+ LSY KAPL PG VN L +QR+ +EN LR
Sbjct: 457 TRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFHPVNGLNKQRTALENFLRL 516
Query: 432 CLSLPPENSMTLEHKL 447
+ LP +N + E +L
Sbjct: 517 LIGLPSQNELRFEERL 532
>pdb|1VKO|A Chain A, Crystal Structure Of Inositol-3-Phosphate Synthase
(Ce21227) From Caenorhabditis Elegans At 2.30 A
Resolution
Length = 537
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 2/152 (1%)
Query: 293 ISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISM 352
ISKS+VVDDMV SN IL+ + PD+ VVIKYVPYV DSKRA+DEY I +GG T +
Sbjct: 375 ISKSSVVDDMVKSNQILFPDAKNPDYCVVIKYVPYVADSKRAMDEYICSIFMGGKQTFVV 434
Query: 353 HNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPGT 412
HNTCEDSLLASPLI DL IL EL+SR+ + EY FH VLSILS L KAP+VPPGT
Sbjct: 435 HNTCEDSLLASPLIYDLAILTELASRVSYK--VDDEYKPFHSVLSILSLLLKAPVVPPGT 492
Query: 413 PVVNALAQQRSCIENILRACLSLPPENSMTLE 444
P+ NA +Q S + ++ A P + M +E
Sbjct: 493 PISNAFMRQFSTLTKLVTALAGFPSDTDMQIE 524
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130
A+IIDGK IA + E+ +V+A +A G R P L +LVG++ AS YV +K K+ +VG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 131 EVNALGVLYHLTLFGRSKLINPM-SIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDV 189
V+ L T ++L+ + ++ + + QLPLP + V + P KDV
Sbjct: 63 FVSRSYDLPETT--SEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDV 120
Query: 190 DGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLL 248
DGF+ NVGR C L PCTP G+ L+ RY ++TFG NAVV G S VG P++M L
Sbjct: 121 DGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMEL 179
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 39/59 (66%), Gaps = 11/59 (18%)
Query: 1 MVKPGACVIDVGITRI---KCVSEV--------AGYITPVPGGVGPMTVAMLMKNTILA 48
+K GA VIDVGI R+ K V +V A YITPVPGGVGPMTVA L++NT+ A
Sbjct: 220 WIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQA 278
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 23/26 (88%)
Query: 259 AGYITPVPGGVGPMTVAMLMKNTILA 284
A YITPVPGGVGPMTVA L++NT+ A
Sbjct: 253 ASYITPVPGGVGPMTVATLIENTLQA 278
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 126/282 (44%), Gaps = 68/282 (24%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130
AQ+IDGK IA + +++ V G RVP L ILVG D AS YV +K K +VG
Sbjct: 5 AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64
Query: 131 EVN-ALGVLYHLTLFGRSKLINPMSI-PISTGVSSHISQLPLPEHMVERAVCNAVAPHKD 188
++ A + + LI+ ++ P G+ + QLPLP H+ + + P KD
Sbjct: 65 FLSQAYDLPAETSQDDLLALIDRLNDDPAIDGI---LVQLPLPAHLDASLLLERIHPDKD 121
Query: 189 VDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVG--MPIAM 246
VDGF+ N+GR + L PCTP G+ L+ + +G +AVV G S VG M + +
Sbjct: 122 VDGFHPYNIGRLAQRMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALEL 181
Query: 247 LL-----------------------------------------------------HADGA 253
LL ADG
Sbjct: 182 LLGGCTVTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADGR 241
Query: 254 GVSEV--------AGYITPVPGGVGPMTVAMLMKNTILAAKH 287
V +V A +ITPVPGGVGPMT A L++NT+ AA+H
Sbjct: 242 LVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEH 283
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 11/62 (17%)
Query: 1 MVKPGACVIDVGITR-----------IKCVSEVAGYITPVPGGVGPMTVAMLMKNTILAA 49
+K GA VIDVGI R + ++ A +ITPVPGGVGPMT A L++NT+ AA
Sbjct: 222 WIKEGAIVIDVGINRQADGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAA 281
Query: 50 KH 51
+H
Sbjct: 282 EH 283
>pdb|3L07|A Chain A, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis.
pdb|3L07|B Chain B, Methylenetetrahydrofolate
DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase,
Putative Bifunctional Protein Fold From Francisella
Tularensis
Length = 285
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 110/198 (55%), Gaps = 4/198 (2%)
Query: 68 ANKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAA 127
+N +IDGK ++ + E L +V+ + P L AI+VGND AS TYV +K K+ A
Sbjct: 1 SNAMILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACA 60
Query: 128 KVG-EVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPH 186
+VG + + + H T +LI+ ++ + V + + QLPLP H+ + V ++ P
Sbjct: 61 QVGIDSQVITLPEHTTESELLELIDQLN--NDSSVHAILVQLPLPAHINKNNVIYSIKPE 118
Query: 187 KDVDGFNIVNVGRFCL-DLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIA 245
KDVDGF+ NVGR L D K L CTP G+ ++R Y ++T G AVV G S VG P++
Sbjct: 119 KDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVS 178
Query: 246 MLLHADGAGVSEVAGYIT 263
LL A V+ + T
Sbjct: 179 QLLLNAKATVTTCHRFTT 196
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 1 MVKPGACVIDVGITRIK----------CVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 50
MVK GA VIDVGI + V + ITPVPGGVGPMT+ L+ NT A+
Sbjct: 222 MVKEGAVVIDVGINHVDGKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQ 281
Query: 51 H 51
Sbjct: 282 E 282
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 251 DGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
D A V + ITPVPGGVGPMT+ L+ NT A+
Sbjct: 246 DFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQE 282
>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2X|B Chain B, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
pdb|2C2Y|A Chain A, Three Dimensional Structure Of Bifunctional
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
From Mycobacterium Tuberculosis
Length = 281
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 95/180 (52%), Gaps = 6/180 (3%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130
A ++DGK + I +LK V A A G R P L ILVG+D S YV K AKVG
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAALDAAG-RTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 131 EVNALGVL-YHLTLFGRSKLINPMSI-PISTGVSSHISQLPLPEHMVERAVCNAVAPHKD 188
+ L ++ ++ I+ ++ P TG +I QLPLP+H+ E A V P KD
Sbjct: 62 ITSIRRDLPADISTATLNETIDELNANPDCTG---YIVQLPLPKHLDENAALERVDPAKD 118
Query: 189 VDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLL 248
DG + N+GR L +PCTP G+ L+RRY + G + VV GR VG P+ +LL
Sbjct: 119 ADGLHPTNLGRLVLGTPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLL 178
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 9/60 (15%)
Query: 1 MVKPGACVIDVGITRIKC---------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 51
MV+PGA VIDVG++R V E+AG+++P PGGVGP+T A L+ N + A+
Sbjct: 221 MVRPGAAVIDVGVSRTDDGLVGDVHPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAER 280
>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
pdb|4A26|B Chain B, The Crystal Structure Of Leishmania Major N5,N10-
Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE
Length = 300
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVAL-GHRVPTLTAILVGNDSASSTYVNNKMKSAAKV 129
AQIIDGK IA I ELKD+V A L G RVP L +I+VG S YV K K+AA+V
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 130 GEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDV 189
G + + V + +N + I QLPLP+H+ E + PHKD
Sbjct: 66 G-MASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDA 124
Query: 190 DGFNIVNVGRFCLDLKT--LIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAML 247
D VNVG + PCT GV L++R +E GK AVV GRS VG P+A L
Sbjct: 125 DALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAAL 184
Query: 248 LHADGAGVS 256
L + A V+
Sbjct: 185 LMKENATVT 193
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 17/70 (24%)
Query: 1 MVKPGACVIDVGITRIK--------------CVSEVAG---YITPVPGGVGPMTVAMLMK 43
+K GA V+DVG T + C E A +I+PVPGGVGPMT+AML++
Sbjct: 228 WIKEGAAVVDVGTTPVPDPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLE 287
Query: 44 NTILAAKHAV 53
NT+ A K A+
Sbjct: 288 NTLEAFKAAL 297
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 27/31 (87%)
Query: 259 AGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289
A +I+PVPGGVGPMT+AML++NT+ A K A+
Sbjct: 267 AAWISPVPGGVGPMTIAMLLENTLEAFKAAL 297
>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
pdb|3P2O|B Chain B, Crystal Structure Of Fold Bifunctional Protein From
Campylobacter Jejuni
Length = 285
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 113/194 (58%), Gaps = 11/194 (5%)
Query: 68 ANKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAA 127
+N ++DGK ++ I EELK++ + + G L ILVG++ AS TYV +K K+
Sbjct: 1 SNAXTLLDGKALSAKIKEELKEKNQFLKSKGIE-SCLAVILVGDNPASQTYVKSKAKACE 59
Query: 128 KVGEVNALGVLYHL----TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAV 183
+ G + +L +YHL T LIN ++ S V + QLPLP+H+ + + ++
Sbjct: 60 ECG-IKSL--VYHLNENITQNELLALINTLNHDDS--VHGILVQLPLPDHICKDLILESI 114
Query: 184 APHKDVDGFNIVNVGRFCLDLKT-LIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGM 242
KDVDGF+ +NVG L L++ +PCTPLGV +L++ Y+++ GK+AV+ G S VG
Sbjct: 115 ISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVXKLLKAYEIDLEGKDAVIIGASNIVGR 174
Query: 243 PIAMLLHADGAGVS 256
P A L GA VS
Sbjct: 175 PXATXLLNAGATVS 188
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 11/61 (18%)
Query: 2 VKPGACVIDVGITRIKC-----------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 50
VK G V+DVGI R++ VS+ + YITPVPGGVGP T+A L++NT+ +AK
Sbjct: 222 VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAK 281
Query: 51 H 51
+
Sbjct: 282 N 282
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 251 DGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
D VS+ + YITPVPGGVGP T+A L++NT+ +AK+
Sbjct: 246 DFEEVSKKSSYITPVPGGVGPXTIAXLLENTVKSAKN 282
>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4U|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor
pdb|4B4V|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4V|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold) Complexed With Nadp Cofactor And Inhibitor
Ly354899
pdb|4B4W|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
pdb|4B4W|B Chain B, Crystal Structure Of Acinetobacter Baumannii N5,
N10-Methylenetetrahydrofolate
Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp
Cofactor And An Inhibitor
Length = 303
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 126/288 (43%), Gaps = 63/288 (21%)
Query: 64 LHKKANKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKM 123
L+ + + A ++DG+ +A I E L V+A A R P L ILVG+D AS+TYV K
Sbjct: 16 LYFQGHMALVLDGRALAKQIEENLLVRVEALKAKTGRTPILATILVGDDGASATYVRMKG 75
Query: 124 KSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAV 183
+ +VG +++L + L + + V + Q P+P + ERA +A+
Sbjct: 76 NACRRVG-MDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAI 134
Query: 184 APHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMP 243
+ KDVDG + GR + TP G+ +++ +E GK+AVV GRS +G P
Sbjct: 135 SLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKP 194
Query: 244 IAMLL----------------------HAD------------------------------ 251
+AM+L AD
Sbjct: 195 MAMMLLQANATVTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHP 254
Query: 252 --GAGVSEV--------AGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289
G GV ++ A TPVPGGVGPMT+ L++ T+ AA+ A+
Sbjct: 255 RDGGGVGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEKAL 302
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 2 VKPGACVID----------VGITRIKCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 51
+K GA V+D VG +++ + E+A TPVPGGVGPMT+ L++ T+ AA+
Sbjct: 241 IKQGAVVVDAGFHPRDGGGVGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEK 300
Query: 52 AV 53
A+
Sbjct: 301 AL 302
>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIA|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly249543
pdb|1DIB|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIB|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly345899
pdb|1DIG|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
pdb|1DIG|B Chain B, Human Methylenetetrahydrofolate Dehydrogenase
Cyclohydrolase Complexed With Nadp And Inhibitor
Ly374571
Length = 306
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 102/194 (52%), Gaps = 12/194 (6%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLT---AIL-VGNDSASSTYVNNKMKSA 126
A+I++GK I+ I LK++V L +VP T AIL VGN S+ Y+N K+K+A
Sbjct: 4 AEILNGKEISAQIRARLKNQV---TQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAA 60
Query: 127 AKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEH--MVERAVCNAVA 184
++G + A + T + S+ + V + QLPL + V NA+A
Sbjct: 61 EEIG-IKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIA 119
Query: 185 PHKDVDGFNIVNVGRFCL-DLKT-LIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGM 242
P KDVDG +N GR DL IPCTP G ELI+ V G++AVV GRSK VG
Sbjct: 120 PEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGA 179
Query: 243 PIAMLLHADGAGVS 256
P+ LL + A V+
Sbjct: 180 PMHDLLLWNNATVT 193
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 17/68 (25%)
Query: 1 MVKPGACVIDVGITRI---------KCVSEVA--------GYITPVPGGVGPMTVAMLMK 43
+KPGA VID GI + K V +VA +ITPVPGGVGPMTVAMLM+
Sbjct: 226 WIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQ 285
Query: 44 NTILAAKH 51
+T+ +AK
Sbjct: 286 STVESAKR 293
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 257 EVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
E A +ITPVPGGVGPMTVAMLM++T+ +AK
Sbjct: 263 ERASFITPVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
pdb|1A4I|B Chain B, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE
Length = 301
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 102/194 (52%), Gaps = 12/194 (6%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLT---AIL-VGNDSASSTYVNNKMKSA 126
A+I++GK I+ I LK++V L +VP T AIL VGN S+ Y+N K+K+A
Sbjct: 4 AEILNGKEISAQIRARLKNQV---TQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAA 60
Query: 127 AKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEH--MVERAVCNAVA 184
++G + A + T + S+ + V + QLPL + V NA+A
Sbjct: 61 EEIG-IKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIA 119
Query: 185 PHKDVDGFNIVNVGRFCL-DLKT-LIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGM 242
P KDVDG +N GR DL IPCTP G ELI+ V G++AVV GRSK VG
Sbjct: 120 PEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGA 179
Query: 243 PIAMLLHADGAGVS 256
P+ LL + A V+
Sbjct: 180 PMHDLLLWNNATVT 193
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 17/68 (25%)
Query: 1 MVKPGACVIDVGITRI---------KCVSEVA--------GYITPVPGGVGPMTVAMLMK 43
+KPGA VID GI + K V +VA +ITPVPGGVGPMTVAMLM+
Sbjct: 226 WIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQ 285
Query: 44 NTILAAKH 51
+T+ +AK
Sbjct: 286 STVESAKR 293
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 257 EVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
E A +ITPVPGGVGPMTVAMLM++T+ +AK
Sbjct: 263 ERASFITPVPGGVGPMTVAMLMQSTVESAKR 293
>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae
pdb|1EE9|A Chain A, Crystal Structure Of The Nad-Dependent 5,10-
Methylenetetrahydrofolate Dehydrogenase From
Saccharomyces Cerevisiae Complexed With Nad
Length = 320
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 102 PTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPIS--T 159
P L L ND A+ Y K++ ++G Y L + + I +
Sbjct: 37 PLLVGFLANNDPAAKMYATWTQKTSE------SMGFRYDLRVIEDKDFLEEAIIQANGDD 90
Query: 160 GVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFC-----LD----LKTLIPC 210
V+ + P+ + ++ + V KDV+G N V LD LK+++PC
Sbjct: 91 SVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPC 150
Query: 211 TPLGVQELIRRYKV---------ETFGKNAVVCGRSKNVGMPIAMLLHADGAGVSEV 258
TPL + +++ K+ +GK +V RS+ VG P+A LL DGA V V
Sbjct: 151 TPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSV 207
>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGL|C Chain C, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|A Chain A, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
pdb|3NGX|B Chain B, Crystal Structure Of Bifunctional
5,10-Methylenetetrahydrofolate Dehydrogenase
CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM
Length = 276
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 102 PTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSI-PISTG 160
P+L I +G++ A+S Y K++ K+G L +++ K I+ ++ P G
Sbjct: 28 PSLKLIQIGDNEAASIYARAKIRRGKKIGIAVDLEKYDDISMKDLLKRIDDLAKDPQING 87
Query: 161 VSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIR 220
+ + + PLP+ + + +KDVD + N G L+ + L+P TP V +++
Sbjct: 88 I---MIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALNREFLVPATPRAVIDIMD 144
Query: 221 RYKVETFGKNAV-VCGRSKNVGMPIAMLL 248
Y + +N V + RS VG P++M+L
Sbjct: 145 YY---GYHENTVTIVNRSPVVGRPLSMML 170
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 10/60 (16%)
Query: 1 MVKPGACVIDVGITRI----------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 50
MV PG+ VIDVGI + + +SE ITPVPGGVGP+T +++N + AA+
Sbjct: 211 MVTPGSVVIDVGINYVNDKVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAE 270
>pdb|3QW2|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|B Chain B, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|C Chain C, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
pdb|3QW2|D Chain D, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Mutant N255a
Length = 392
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 269 VGPMTVAML--MKNTILAAKHAVIYNI-SKSNVVDDMVASNSILYRPGEKPDHTVVIKYV 325
VG M+ A+L +L+A+ + SK V++ M+ G P I+Y
Sbjct: 249 VGWMSYAILGDYDGKVLSARDNKESKVLSKDKVLEKML---------GYSPYSITEIQYF 299
Query: 326 PYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDL 369
P + D+K A D + LG D+++A+PLILD+
Sbjct: 300 PSLVDNKTAFDFVHFKGFLGKLMKFYFIWDAIDAIVAAPLILDI 343
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 28 PVPGGV-GPMTVAMLMKNTILAAKHAVIYNVLQPNAILHKKANKAQIIDGKFIANTILEE 86
P+P + G MTVA++ L KH VI+ ++P+ IL + + ++ D + ++
Sbjct: 120 PIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179
Query: 87 LKDE 90
KD
Sbjct: 180 AKDR 183
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 25/139 (17%)
Query: 95 VALGHRVPT----LTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFG----R 146
A G +P LT +L +DSA VNN + S K+ LG L+ L G R
Sbjct: 109 FATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVR 168
Query: 147 SKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPH-----KDVDGFNIVNVGRFC 201
+ I +S + T LP+ ++ + V + +DV G V +
Sbjct: 169 ERAIKFLSTKLKT----------LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL 218
Query: 202 LDLKTLIPCTPLGVQELIR 220
LK+L + G Q+L+
Sbjct: 219 SGLKSLQTVS--GRQQLVE 235
>pdb|3QVX|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Mutant K367a
Length = 392
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 293 ISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISM 352
+SK V++ M+ G P I+Y P + D+K A D + LG
Sbjct: 276 LSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFDFVHFKGFLGKLMKFYF 326
Query: 353 HNTCEDSLLASPLILDL 369
D+++A+PLILD+
Sbjct: 327 IWDAIDAIVAAPLILDI 343
>pdb|2ZIX|A Chain A, Crystal Structure Of The Mus81-Eme1 Complex
Length = 307
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 41 LMKNTILAAKHAVIYNVLQPNAILHKKANKAQIIDGKFIANTILEELKDEVKAWVAL 97
L + L +H ++N+ P + L + Q+IDG F+ T ++K E A++AL
Sbjct: 117 LERRVYLVEEHGSVHNLSLPESTLLQAVTNTQVIDGFFVKRTA--DIK-ESAAYLAL 170
>pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
pdb|1WLE|B Chain B, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna
Synthetase Complexed With Seryl-Adenylate
Length = 501
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 268 GVGPMTVAMLMKNTILA-------AKHAVIYNISKSNVVDDMVASNSILYRPGEKPDHTV 320
G PMTV L++ + AK + IYNI S D +A + + G DH+V
Sbjct: 237 GFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSV 296
Query: 321 VIKYVP 326
+ +P
Sbjct: 297 AFRDLP 302
>pdb|1U1I|A Chain A, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|B Chain B, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|C Chain C, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|1U1I|D Chain D, Myo-Inositol Phosphate Synthase Mips From A. Fulgidus
pdb|3QVS|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild Type
pdb|3QVT|A Chain A, L-Myo-Inositol 1-Phosphate Synthase From Archaeoglobus
Fulgidus Wild- Type With The Intermediate 5-Keto
1-Phospho Glucose
Length = 392
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 293 ISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISM 352
+SK V++ M+ G P I+Y P + D+K A D + LG
Sbjct: 276 LSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFDFVHFKGFLGKLMKFYF 326
Query: 353 HNTCEDSLLASPLILDL 369
D+++A+PLILD+
Sbjct: 327 IWDAIDAIVAAPLILDI 343
>pdb|3SC4|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
pdb|3SC4|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase (A0qtm2
Homolog) Mycobacterium Thermoresistibile
Length = 285
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVP 266
GK + G S+ +G+ IA + ADGA V+ VA P P
Sbjct: 9 GKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHP 47
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 25/139 (17%)
Query: 95 VALGHRVPT----LTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFG----R 146
A G +P LT +L +DSA VNN + S K+ LG L+ L G R
Sbjct: 92 FATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVR 151
Query: 147 SKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPH-----KDVDGFNIVNVGRFC 201
+ I +S + T LP+ ++ + V + +DV G V +
Sbjct: 152 ERAIKFLSTKLKT----------LPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKIL 201
Query: 202 LDLKTLIPCTPLGVQELIR 220
LK+L + G Q+L+
Sbjct: 202 SGLKSLQTVS--GRQQLVE 218
>pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|B Chain B, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|C Chain C, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
pdb|3U5T|D Chain D, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Reductase From Sinorhizobium Meliloti
Length = 267
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 213 LGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADG-----------AGVSEVAGY 261
LG + L + ET K A+V G S+ +G IA L +DG A EVAG
Sbjct: 13 LGTENLYFQSXXET-NKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGK 71
Query: 262 ITPVPG 267
I G
Sbjct: 72 IEAAGG 77
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 254 GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDMVASNSI 308
G+ G++ G+ PM++ + K+ ILA + A N+ + +V A NS+
Sbjct: 286 GMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSV 340
>pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase
From Mesorhizobium Loti
pdb|3NDR|B Chain B, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase
From Mesorhizobium Loti
pdb|3NDR|C Chain C, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase
From Mesorhizobium Loti
pdb|3NDR|D Chain D, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase
From Mesorhizobium Loti
Length = 247
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK A+V G ++ +G IA L ADGA V
Sbjct: 6 GKTALVTGAAQGIGKAIAARLAADGATV 33
>pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal
4-Dehydrogenase From Mesorhizobium Loti
pdb|3NUG|B Chain B, Crystal Structure Of Wild Type Tetrameric Pyridoxal
4-Dehydrogenase From Mesorhizobium Loti
pdb|3NUG|C Chain C, Crystal Structure Of Wild Type Tetrameric Pyridoxal
4-Dehydrogenase From Mesorhizobium Loti
pdb|3NUG|D Chain D, Crystal Structure Of Wild Type Tetrameric Pyridoxal
4-Dehydrogenase From Mesorhizobium Loti
pdb|3RWB|A Chain A, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
Mesorhizobium Loti
pdb|3RWB|B Chain B, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
Mesorhizobium Loti
pdb|3RWB|C Chain C, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
Mesorhizobium Loti
pdb|3RWB|D Chain D, Crystal Structure Of Complex Of 4pal (4-Pyridoxolactone)
And Pldh (Tetrameric Pyridoxal 4-Dehydrogenase) From
Mesorhizobium Loti
Length = 247
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK A+V G ++ +G IA L ADGA V
Sbjct: 6 GKTALVTGAAQGIGKAIAARLAADGATV 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,769,410
Number of Sequences: 62578
Number of extensions: 543358
Number of successful extensions: 1459
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1382
Number of HSP's gapped (non-prelim): 52
length of query: 477
length of database: 14,973,337
effective HSP length: 102
effective length of query: 375
effective length of database: 8,590,381
effective search space: 3221392875
effective search space used: 3221392875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)