Query psy4615
Match_columns 477
No_of_seqs 335 out of 2256
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 21:25:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0693|consensus 100.0 6.5E-66 1.4E-70 518.4 11.9 251 177-448 248-512 (512)
2 COG0190 FolD 5,10-methylene-te 100.0 4E-63 8.7E-68 491.3 23.4 215 72-290 1-281 (283)
3 PRK14171 bifunctional 5,10-met 100.0 8.5E-63 1.8E-67 492.8 24.6 216 70-289 1-283 (288)
4 PRK14184 bifunctional 5,10-met 100.0 1.6E-62 3.5E-67 490.6 24.2 213 72-288 2-283 (286)
5 PRK14170 bifunctional 5,10-met 100.0 1.7E-62 3.8E-67 489.8 24.2 215 70-289 1-281 (284)
6 PRK14190 bifunctional 5,10-met 100.0 2.5E-62 5.4E-67 489.1 24.5 217 69-290 1-283 (284)
7 PRK14177 bifunctional 5,10-met 100.0 4.1E-62 8.8E-67 487.1 24.3 213 71-287 3-277 (284)
8 PRK14186 bifunctional 5,10-met 100.0 5.4E-62 1.2E-66 489.1 24.9 225 70-302 1-295 (297)
9 PRK14172 bifunctional 5,10-met 100.0 3.3E-62 7.2E-67 486.7 23.0 212 70-285 1-277 (278)
10 PRK14187 bifunctional 5,10-met 100.0 6.3E-62 1.4E-66 487.8 24.2 216 70-289 1-287 (294)
11 PRK14169 bifunctional 5,10-met 100.0 8.9E-62 1.9E-66 484.5 24.5 213 71-288 1-279 (282)
12 PLN02516 methylenetetrahydrofo 100.0 1.2E-61 2.7E-66 486.6 24.7 217 69-289 7-297 (299)
13 PLN02438 inositol-3-phosphate 100.0 1.3E-62 2.9E-67 515.0 17.7 262 171-446 242-510 (510)
14 PRK14179 bifunctional 5,10-met 100.0 1.5E-61 3.3E-66 483.4 24.5 216 70-289 1-282 (284)
15 PLN02616 tetrahydrofolate dehy 100.0 1.1E-61 2.4E-66 495.3 23.5 216 70-289 72-361 (364)
16 PRK14167 bifunctional 5,10-met 100.0 1.5E-61 3.4E-66 485.8 24.2 217 70-291 1-292 (297)
17 PRK14166 bifunctional 5,10-met 100.0 1.8E-61 3.9E-66 482.3 24.4 211 72-287 2-279 (282)
18 PLN02897 tetrahydrofolate dehy 100.0 1.2E-61 2.6E-66 493.1 23.5 215 70-288 55-343 (345)
19 PRK14191 bifunctional 5,10-met 100.0 1.9E-61 4E-66 482.8 24.4 216 72-291 2-283 (285)
20 PRK14182 bifunctional 5,10-met 100.0 1.8E-61 3.9E-66 482.0 24.2 212 72-288 2-280 (282)
21 PRK14193 bifunctional 5,10-met 100.0 1.9E-61 4.2E-66 482.5 24.3 214 70-288 2-282 (284)
22 PRK14189 bifunctional 5,10-met 100.0 2E-61 4.4E-66 482.8 24.4 216 70-290 2-283 (285)
23 PRK14185 bifunctional 5,10-met 100.0 2.1E-61 4.6E-66 483.8 24.0 213 72-288 2-290 (293)
24 PRK14176 bifunctional 5,10-met 100.0 1.9E-61 4.1E-66 482.9 23.6 215 68-286 5-284 (287)
25 PRK14183 bifunctional 5,10-met 100.0 2.6E-61 5.7E-66 480.7 24.1 212 72-287 2-279 (281)
26 PRK14180 bifunctional 5,10-met 100.0 2.7E-61 5.9E-66 481.0 23.9 213 72-288 2-280 (282)
27 PRK14168 bifunctional 5,10-met 100.0 4.4E-61 9.6E-66 482.5 24.1 217 70-290 2-296 (297)
28 PRK10792 bifunctional 5,10-met 100.0 7.9E-61 1.7E-65 478.3 23.5 214 71-288 3-282 (285)
29 PRK14181 bifunctional 5,10-met 100.0 9E-61 1.9E-65 478.1 22.8 210 72-289 1-286 (287)
30 PRK14194 bifunctional 5,10-met 100.0 2.6E-60 5.6E-65 477.7 24.5 223 70-297 3-294 (301)
31 PRK14174 bifunctional 5,10-met 100.0 4.2E-60 9.1E-65 475.5 24.4 215 72-290 2-294 (295)
32 PRK14173 bifunctional 5,10-met 100.0 3.9E-60 8.5E-65 473.7 23.6 211 70-288 2-281 (287)
33 PRK14175 bifunctional 5,10-met 100.0 7.1E-60 1.5E-64 472.0 23.3 213 70-287 2-280 (286)
34 PRK14178 bifunctional 5,10-met 100.0 3E-59 6.4E-64 465.8 23.0 208 72-287 1-273 (279)
35 PRK14188 bifunctional 5,10-met 100.0 6.8E-59 1.5E-63 467.2 23.9 215 70-288 1-288 (296)
36 KOG4230|consensus 100.0 4.4E-58 9.5E-63 482.1 16.8 277 70-350 2-393 (935)
37 KOG0089|consensus 100.0 6.7E-53 1.4E-57 413.1 19.1 214 70-287 7-304 (309)
38 PRK14192 bifunctional 5,10-met 100.0 3.1E-52 6.7E-57 417.1 21.7 214 70-287 2-280 (283)
39 TIGR03450 mycothiol_INO1 inosi 100.0 1.5E-32 3.3E-37 278.2 11.5 211 148-406 114-334 (351)
40 PF00763 THF_DHG_CYH: Tetrahyd 100.0 1.3E-31 2.8E-36 236.3 10.9 114 72-190 1-117 (117)
41 COG1260 INO1 Myo-inositol-1-ph 99.9 7.6E-27 1.6E-31 236.8 11.4 186 214-430 175-361 (362)
42 PF02882 THF_DHG_CYH_C: Tetrah 99.9 1.2E-26 2.6E-31 215.5 6.8 95 193-287 1-159 (160)
43 cd01079 NAD_bind_m-THF_DH NAD 99.9 4.4E-26 9.6E-31 217.2 10.8 101 185-288 1-195 (197)
44 PF01658 Inos-1-P_synth: Myo-i 99.9 1.5E-25 3.2E-30 197.0 0.3 111 237-359 2-112 (112)
45 cd05212 NAD_bind_m-THF_DH_Cycl 99.8 8.7E-21 1.9E-25 172.8 7.9 81 205-285 5-139 (140)
46 PF07994 NAD_binding_5: Myo-in 99.8 9.8E-20 2.1E-24 183.9 5.0 120 172-430 168-295 (295)
47 cd01080 NAD_bind_m-THF_DH_Cycl 99.8 1.8E-18 3.8E-23 161.9 8.4 101 185-285 1-167 (168)
48 KOG4230|consensus 99.6 7.5E-17 1.6E-21 171.8 5.1 304 1-375 223-574 (935)
49 PRK14167 bifunctional 5,10-met 99.5 3.9E-15 8.5E-20 150.6 4.4 55 1-55 222-292 (297)
50 PRK14186 bifunctional 5,10-met 99.5 7E-15 1.5E-19 148.8 4.4 53 1-53 219-286 (297)
51 PRK14187 bifunctional 5,10-met 99.5 6.7E-15 1.5E-19 148.7 4.1 52 1-52 221-286 (294)
52 PRK14194 bifunctional 5,10-met 99.5 1.2E-14 2.5E-19 147.5 5.1 59 1-59 220-292 (301)
53 cd05212 NAD_bind_m-THF_DH_Cycl 99.5 2.8E-14 6.2E-19 130.1 3.6 49 1-49 89-139 (140)
54 PRK14188 bifunctional 5,10-met 99.4 7.1E-14 1.5E-18 141.6 4.3 52 1-52 219-288 (296)
55 PRK08306 dipicolinate synthase 93.3 0.25 5.5E-06 50.4 7.5 42 211-253 134-176 (296)
56 PRK08306 dipicolinate synthase 91.7 0.25 5.4E-06 50.4 5.0 48 2-49 231-285 (296)
57 cd05191 NAD_bind_amino_acid_DH 89.3 0.41 8.8E-06 39.7 3.4 42 210-252 1-46 (86)
58 TIGR02853 spore_dpaA dipicolin 87.8 1.3 2.9E-05 45.1 6.7 43 210-253 132-175 (287)
59 COG0190 FolD 5,10-methylene-te 87.6 0.28 6.1E-06 50.2 1.6 18 1-18 217-234 (283)
60 PLN02616 tetrahydrofolate dehy 86.8 0.28 6.2E-06 51.8 1.2 16 1-16 292-307 (364)
61 PLN02897 tetrahydrofolate dehy 86.4 0.31 6.7E-06 51.2 1.2 17 1-17 275-291 (345)
62 PRK14171 bifunctional 5,10-met 86.1 0.33 7.1E-06 49.9 1.2 16 1-16 220-235 (288)
63 PF02882 THF_DHG_CYH_C: Tetrah 85.2 0.38 8.1E-06 45.4 1.0 16 1-16 97-112 (160)
64 PRK14185 bifunctional 5,10-met 85.1 0.41 8.8E-06 49.3 1.3 17 1-17 222-238 (293)
65 PRK14166 bifunctional 5,10-met 85.0 0.41 8.9E-06 49.1 1.3 16 1-16 218-233 (282)
66 cd01075 NAD_bind_Leu_Phe_Val_D 85.0 1.3 2.9E-05 42.6 4.7 46 209-255 3-54 (200)
67 PRK14172 bifunctional 5,10-met 84.8 0.41 9E-06 48.9 1.2 17 1-17 219-235 (278)
68 PRK14177 bifunctional 5,10-met 84.8 0.43 9.4E-06 48.9 1.3 15 1-15 220-234 (284)
69 PRK14181 bifunctional 5,10-met 84.8 0.41 8.9E-06 49.2 1.2 16 1-16 218-233 (287)
70 PRK10423 transcriptional repre 84.7 2.9 6.4E-05 41.4 7.2 61 102-167 57-119 (327)
71 PRK14168 bifunctional 5,10-met 84.6 0.44 9.6E-06 49.1 1.3 16 1-16 226-241 (297)
72 PRK14173 bifunctional 5,10-met 84.5 0.44 9.5E-06 49.0 1.2 16 1-16 216-231 (287)
73 PRK14193 bifunctional 5,10-met 83.9 0.48 1E-05 48.6 1.2 16 1-16 221-236 (284)
74 PRK14170 bifunctional 5,10-met 83.7 0.51 1.1E-05 48.4 1.3 16 1-16 218-233 (284)
75 PRK14169 bifunctional 5,10-met 83.6 0.5 1.1E-05 48.5 1.2 16 1-16 217-232 (282)
76 PRK14180 bifunctional 5,10-met 83.4 0.53 1.1E-05 48.3 1.3 17 1-17 219-235 (282)
77 PLN02516 methylenetetrahydrofo 82.8 0.57 1.2E-05 48.4 1.2 16 1-16 228-243 (299)
78 PRK14182 bifunctional 5,10-met 82.6 0.54 1.2E-05 48.2 1.0 16 1-16 218-233 (282)
79 TIGR02417 fruct_sucro_rep D-fr 81.7 4.7 0.0001 40.2 7.3 84 79-167 29-123 (327)
80 PRK14183 bifunctional 5,10-met 81.4 0.71 1.5E-05 47.3 1.3 16 1-16 218-233 (281)
81 PRK09526 lacI lac repressor; R 81.4 5.7 0.00012 39.7 7.8 67 101-171 63-131 (342)
82 PRK11303 DNA-binding transcrip 81.2 5.8 0.00012 39.4 7.7 91 73-167 20-124 (328)
83 cd05313 NAD_bind_2_Glu_DH NAD( 79.5 6.5 0.00014 39.8 7.4 67 205-273 11-84 (254)
84 PRK14190 bifunctional 5,10-met 79.4 0.88 1.9E-05 46.7 1.2 16 1-16 219-234 (284)
85 PRK10727 DNA-binding transcrip 79.3 9.2 0.0002 38.5 8.5 61 102-167 60-122 (343)
86 PRK14031 glutamate dehydrogena 79.2 3.5 7.7E-05 44.9 5.8 64 206-271 202-272 (444)
87 PRK10401 DNA-binding transcrip 77.6 9.5 0.00021 38.4 8.1 61 102-167 60-122 (346)
88 PRK14176 bifunctional 5,10-met 77.5 1.2 2.5E-05 45.9 1.4 16 1-16 225-240 (287)
89 PRK14189 bifunctional 5,10-met 76.6 1.2 2.6E-05 45.8 1.2 16 1-16 219-234 (285)
90 PRK14030 glutamate dehydrogena 75.2 9.4 0.0002 41.7 7.6 64 206-271 202-272 (445)
91 PRK10792 bifunctional 5,10-met 75.1 1.4 3E-05 45.3 1.2 16 1-16 220-235 (285)
92 PRK14191 bifunctional 5,10-met 74.8 1.5 3.2E-05 45.1 1.4 16 1-16 218-233 (285)
93 TIGR01481 ccpA catabolite cont 74.8 13 0.00027 37.0 8.0 62 101-167 59-122 (329)
94 PRK14184 bifunctional 5,10-met 74.7 1.3 2.9E-05 45.5 1.0 17 1-17 222-238 (286)
95 PRK14987 gluconate operon tran 74.5 15 0.00034 36.6 8.6 61 102-167 64-126 (331)
96 PRK10014 DNA-binding transcrip 74.3 10 0.00022 37.9 7.2 64 101-168 64-128 (342)
97 PRK14174 bifunctional 5,10-met 73.9 1.5 3.3E-05 45.2 1.2 16 1-16 224-239 (295)
98 PRK10703 DNA-binding transcrip 72.9 11 0.00025 37.6 7.2 62 102-167 60-122 (341)
99 PRK14178 bifunctional 5,10-met 72.5 1.8 3.8E-05 44.5 1.2 16 1-16 213-228 (279)
100 PRK12548 shikimate 5-dehydroge 72.2 11 0.00023 38.3 6.9 118 123-254 29-151 (289)
101 PRK14805 ornithine carbamoyltr 72.2 62 0.0013 33.5 12.4 120 113-255 48-174 (302)
102 PRK14179 bifunctional 5,10-met 71.4 2 4.2E-05 44.2 1.3 16 1-16 219-234 (284)
103 PTZ00079 NADP-specific glutama 71.0 13 0.00028 40.7 7.4 63 207-271 212-281 (454)
104 TIGR01809 Shik-DH-AROM shikima 70.9 41 0.00088 34.1 10.6 128 106-253 8-149 (282)
105 PRK14804 ornithine carbamoyltr 70.6 1.2E+02 0.0025 31.6 14.0 117 120-255 59-180 (311)
106 PRK12749 quinate/shikimate deh 69.5 15 0.00032 37.6 7.1 116 121-253 25-148 (288)
107 cd01076 NAD_bind_1_Glu_DH NAD( 67.8 20 0.00044 35.3 7.5 64 206-271 5-75 (227)
108 TIGR00507 aroE shikimate 5-deh 67.5 13 0.00029 37.1 6.2 119 123-253 20-141 (270)
109 PRK12549 shikimate 5-dehydroge 66.7 37 0.0008 34.5 9.3 129 107-253 9-151 (284)
110 PRK11041 DNA-binding transcrip 66.2 21 0.00045 35.0 7.3 62 102-167 36-98 (309)
111 PLN02477 glutamate dehydrogena 66.0 13 0.00027 40.3 6.0 64 206-271 180-250 (410)
112 PRK00258 aroE shikimate 5-dehy 64.7 18 0.0004 36.3 6.7 121 122-253 24-147 (278)
113 KOG0089|consensus 64.4 3.3 7.2E-05 42.6 1.2 17 1-17 237-253 (309)
114 PRK09492 treR trehalose repres 64.3 24 0.00053 34.7 7.4 62 101-167 62-125 (315)
115 cd05211 NAD_bind_Glu_Leu_Phe_V 62.8 12 0.00027 36.6 4.9 55 214-271 9-66 (217)
116 PF07287 DUF1446: Protein of u 62.2 1.6E+02 0.0035 31.5 13.3 58 80-143 53-110 (362)
117 cd01078 NAD_bind_H4MPT_DH NADP 61.7 13 0.00028 34.9 4.7 41 214-254 14-54 (194)
118 PRK14175 bifunctional 5,10-met 61.2 4.4 9.5E-05 41.7 1.5 16 1-16 219-234 (286)
119 PTZ00075 Adenosylhomocysteinas 60.5 8.7 0.00019 42.3 3.7 39 216-255 242-280 (476)
120 PRK09310 aroDE bifunctional 3- 60.3 25 0.00053 38.5 7.1 131 107-254 219-357 (477)
121 PF04392 ABC_sub_bind: ABC tra 58.7 65 0.0014 32.3 9.4 60 101-166 131-190 (294)
122 PRK09414 glutamate dehydrogena 54.6 23 0.00051 38.7 5.7 64 206-271 206-276 (445)
123 TIGR01832 kduD 2-deoxy-D-gluco 53.9 12 0.00026 35.5 3.1 31 225-255 2-32 (248)
124 TIGR03316 ygeW probable carbam 52.5 2E+02 0.0044 30.6 12.2 140 103-255 43-204 (357)
125 PRK02255 putrescine carbamoylt 52.2 2.8E+02 0.006 29.3 13.0 130 103-255 43-181 (338)
126 PLN02342 ornithine carbamoyltr 50.2 3.4E+02 0.0074 28.8 14.5 162 71-255 46-221 (348)
127 TIGR02405 trehalos_R_Ecol treh 49.5 58 0.0013 32.3 7.3 64 100-167 58-122 (311)
128 cd06292 PBP1_LacI_like_10 Liga 47.7 75 0.0016 30.3 7.5 56 111-170 10-65 (273)
129 cd06271 PBP1_AglR_RafR_like Li 47.0 64 0.0014 30.4 6.9 54 112-169 15-68 (268)
130 PRK05717 oxidoreductase; Valid 46.8 19 0.00041 34.6 3.3 33 223-255 5-37 (255)
131 PRK08628 short chain dehydroge 46.2 21 0.00045 34.2 3.4 33 223-255 2-34 (258)
132 PRK06138 short chain dehydroge 46.1 19 0.00042 34.1 3.1 31 225-255 2-32 (252)
133 PRK08339 short chain dehydroge 46.0 19 0.00042 35.2 3.2 32 224-255 4-35 (263)
134 cd01537 PBP1_Repressors_Sugar_ 45.9 1.5E+02 0.0033 27.3 9.1 65 104-172 2-67 (264)
135 PRK07200 aspartate/ornithine c 45.3 3.2E+02 0.0069 29.6 12.4 145 103-264 60-226 (395)
136 PRK02102 ornithine carbamoyltr 45.2 3.9E+02 0.0085 28.1 13.7 116 119-255 61-183 (331)
137 PRK12742 oxidoreductase; Provi 44.9 22 0.00047 33.5 3.3 31 225-255 3-33 (237)
138 TIGR00670 asp_carb_tr aspartat 44.0 3.8E+02 0.0083 27.7 12.4 130 103-255 40-179 (301)
139 PRK06523 short chain dehydroge 43.6 25 0.00054 33.7 3.5 31 225-255 6-36 (260)
140 PRK00779 ornithine carbamoyltr 43.0 4E+02 0.0087 27.6 12.5 117 118-255 57-179 (304)
141 PRK14192 bifunctional 5,10-met 42.8 11 0.00024 38.6 0.9 16 1-16 220-235 (283)
142 PRK12828 short chain dehydroge 42.6 26 0.00055 32.7 3.3 31 225-255 4-34 (239)
143 PRK06124 gluconate 5-dehydroge 42.6 25 0.00054 33.7 3.3 33 223-255 6-38 (256)
144 PLN02653 GDP-mannose 4,6-dehyd 42.4 24 0.00051 35.7 3.3 31 225-255 3-33 (340)
145 cd06299 PBP1_LacI_like_13 Liga 42.2 76 0.0016 30.0 6.6 59 105-168 3-63 (265)
146 cd06354 PBP1_BmpA_PnrA_like Pe 41.0 54 0.0012 31.8 5.5 60 104-168 2-65 (265)
147 PRK07774 short chain dehydroge 41.0 25 0.00053 33.4 3.0 31 225-255 3-33 (250)
148 PRK07062 short chain dehydroge 41.0 26 0.00056 33.8 3.2 32 224-255 4-35 (265)
149 PRK12550 shikimate 5-dehydroge 40.4 1.7E+02 0.0037 29.8 9.0 131 100-253 7-146 (272)
150 TIGR03325 BphB_TodD cis-2,3-di 40.1 24 0.00053 34.0 2.9 30 226-255 3-32 (262)
151 cd06286 PBP1_CcpB_like Ligand- 40.0 82 0.0018 29.8 6.4 59 105-168 3-63 (260)
152 PRK07856 short chain dehydroge 39.7 29 0.00063 33.2 3.3 31 225-255 3-33 (252)
153 PRK06398 aldose dehydrogenase; 39.5 27 0.0006 33.8 3.1 31 225-255 3-33 (258)
154 cd06296 PBP1_CatR_like Ligand- 39.4 78 0.0017 30.0 6.2 57 111-171 10-66 (270)
155 PRK07523 gluconate 5-dehydroge 39.4 27 0.00059 33.4 3.1 31 225-255 7-37 (255)
156 PRK12562 ornithine carbamoyltr 39.1 4.9E+02 0.011 27.5 12.5 116 119-255 60-184 (334)
157 PRK13394 3-hydroxybutyrate deh 39.0 27 0.00059 33.3 3.0 31 225-255 4-34 (262)
158 PRK07890 short chain dehydroge 38.8 29 0.00064 33.0 3.2 30 226-255 3-32 (258)
159 PRK12481 2-deoxy-D-gluconate 3 38.8 28 0.00061 33.6 3.1 31 225-255 5-35 (251)
160 cd01065 NAD_bind_Shikimate_DH 38.7 45 0.00098 29.6 4.2 39 213-252 4-42 (155)
161 PRK06128 oxidoreductase; Provi 38.4 27 0.00059 34.8 3.0 31 225-255 52-82 (300)
162 PRK06935 2-deoxy-D-gluconate 3 38.3 29 0.00063 33.4 3.1 31 225-255 12-42 (258)
163 PRK08416 7-alpha-hydroxysteroi 37.9 29 0.00062 33.6 3.0 31 225-255 5-35 (260)
164 cd06283 PBP1_RegR_EndR_KdgR_li 37.8 91 0.002 29.4 6.3 54 111-169 10-64 (267)
165 PRK06196 oxidoreductase; Provi 37.7 29 0.00064 34.8 3.1 34 222-255 20-53 (315)
166 PRK05653 fabG 3-ketoacyl-(acyl 37.6 31 0.00068 32.2 3.1 31 225-255 2-32 (246)
167 COG0334 GdhA Glutamate dehydro 37.1 52 0.0011 35.7 5.0 48 206-254 181-232 (411)
168 cd06267 PBP1_LacI_sugar_bindin 36.6 1E+02 0.0022 28.5 6.4 65 104-173 2-68 (264)
169 PRK06949 short chain dehydroge 36.3 33 0.00071 32.7 3.0 32 224-255 5-36 (258)
170 TIGR03206 benzo_BadH 2-hydroxy 36.2 33 0.00071 32.5 3.0 30 226-255 1-30 (250)
171 COG1609 PurR Transcriptional r 36.1 95 0.0021 32.0 6.6 75 373-453 253-329 (333)
172 PRK12827 short chain dehydroge 36.0 34 0.00074 32.1 3.1 30 226-255 4-33 (249)
173 PRK05876 short chain dehydroge 35.9 34 0.00074 33.7 3.2 30 226-255 4-33 (275)
174 cd06277 PBP1_LacI_like_1 Ligan 35.8 1.1E+02 0.0023 29.2 6.5 53 111-168 13-66 (268)
175 PRK08213 gluconate 5-dehydroge 35.6 35 0.00075 32.8 3.1 32 224-255 8-39 (259)
176 PRK05565 fabG 3-ketoacyl-(acyl 35.1 36 0.00077 32.0 3.1 31 225-255 2-32 (247)
177 PRK04284 ornithine carbamoyltr 35.0 5.6E+02 0.012 26.9 12.7 128 104-255 48-183 (332)
178 PRK08085 gluconate 5-dehydroge 35.0 36 0.00078 32.6 3.1 31 225-255 6-36 (254)
179 PRK01713 ornithine carbamoyltr 35.0 1.6E+02 0.0035 30.9 8.1 115 120-255 62-184 (334)
180 PRK12566 glycine dehydrogenase 35.0 1.1E+02 0.0024 36.7 7.6 55 114-183 177-233 (954)
181 PRK06171 sorbitol-6-phosphate 35.0 37 0.00081 32.7 3.2 31 225-255 6-36 (266)
182 PRK05867 short chain dehydroge 34.9 35 0.00076 32.7 3.0 31 225-255 6-36 (253)
183 PRK06463 fabG 3-ketoacyl-(acyl 34.8 37 0.00081 32.5 3.2 31 225-255 4-34 (255)
184 PRK07792 fabG 3-ketoacyl-(acyl 34.6 37 0.0008 34.1 3.2 33 223-255 7-39 (306)
185 PRK12829 short chain dehydroge 34.6 39 0.00085 32.2 3.3 30 226-255 9-38 (264)
186 PRK08862 short chain dehydroge 34.5 34 0.00074 32.9 2.9 31 225-255 2-32 (227)
187 PRK12823 benD 1,6-dihydroxycyc 34.4 38 0.00082 32.4 3.2 31 225-255 5-35 (260)
188 PRK07825 short chain dehydroge 34.0 38 0.00082 32.9 3.1 31 225-255 2-32 (273)
189 PRK09242 tropinone reductase; 33.9 37 0.0008 32.5 3.0 31 225-255 6-36 (257)
190 PRK09186 flagellin modificatio 33.9 39 0.00084 32.2 3.1 30 226-255 2-31 (256)
191 KOG0725|consensus 33.8 39 0.00085 34.1 3.3 31 225-255 5-35 (270)
192 PRK06172 short chain dehydroge 33.7 40 0.00086 32.2 3.2 31 225-255 4-34 (253)
193 PRK07231 fabG 3-ketoacyl-(acyl 33.7 41 0.00089 31.7 3.2 31 225-255 2-32 (251)
194 PRK12746 short chain dehydroge 33.6 40 0.00086 32.1 3.2 30 226-255 4-33 (254)
195 cd06278 PBP1_LacI_like_2 Ligan 33.6 1.1E+02 0.0024 28.8 6.1 53 112-169 11-63 (266)
196 PRK09072 short chain dehydroge 33.5 37 0.0008 32.7 2.9 31 225-255 2-32 (263)
197 PRK08642 fabG 3-ketoacyl-(acyl 33.4 40 0.00087 31.9 3.1 30 226-255 3-32 (253)
198 PRK06841 short chain dehydroge 33.3 42 0.0009 32.0 3.2 31 225-255 12-42 (255)
199 PRK12826 3-ketoacyl-(acyl-carr 33.2 40 0.00087 31.7 3.1 30 226-255 4-33 (251)
200 cd01575 PBP1_GntR Ligand-bindi 33.2 99 0.0021 29.1 5.8 60 105-168 3-63 (268)
201 PRK08936 glucose-1-dehydrogena 33.2 40 0.00086 32.5 3.1 31 225-255 4-34 (261)
202 PRK06550 fabG 3-ketoacyl-(acyl 33.0 40 0.00087 31.7 3.1 31 225-255 2-32 (235)
203 PRK06701 short chain dehydroge 32.8 41 0.0009 33.5 3.3 32 224-255 42-73 (290)
204 PRK07097 gluconate 5-dehydroge 32.7 43 0.00092 32.4 3.2 33 223-255 5-37 (265)
205 PRK05872 short chain dehydroge 32.7 40 0.00086 33.6 3.1 32 224-255 5-36 (296)
206 cd06294 PBP1_ycjW_transcriptio 32.3 1.1E+02 0.0024 28.9 5.9 55 111-169 15-69 (270)
207 PRK12429 3-hydroxybutyrate deh 32.1 42 0.00092 31.8 3.1 30 226-255 2-31 (258)
208 PLN00198 anthocyanidin reducta 32.1 33 0.00071 34.6 2.4 32 224-255 5-36 (338)
209 PRK07063 short chain dehydroge 32.1 43 0.00093 32.2 3.1 31 225-255 4-34 (260)
210 PRK05875 short chain dehydroge 31.8 40 0.00087 32.7 2.9 31 225-255 4-34 (276)
211 cd01840 SGNH_hydrolase_yrhL_li 31.8 2.1E+02 0.0046 25.5 7.4 39 89-130 39-77 (150)
212 PRK14027 quinate/shikimate deh 31.8 1.8E+02 0.004 29.6 7.7 120 122-253 23-151 (283)
213 PRK15438 erythronate-4-phospha 31.7 64 0.0014 34.5 4.6 41 214-255 102-142 (378)
214 PRK05557 fabG 3-ketoacyl-(acyl 31.6 46 0.001 31.1 3.2 31 225-255 2-32 (248)
215 cd06293 PBP1_LacI_like_11 Liga 31.4 1.6E+02 0.0034 28.0 6.9 59 104-167 2-62 (269)
216 PRK06079 enoyl-(acyl carrier p 31.4 42 0.00091 32.5 2.9 30 226-255 5-36 (252)
217 PRK06057 short chain dehydroge 31.4 43 0.00094 32.1 3.0 31 225-255 4-34 (255)
218 PRK08264 short chain dehydroge 31.3 44 0.00095 31.5 3.0 31 225-255 3-34 (238)
219 TIGR00658 orni_carb_tr ornithi 31.3 6.1E+02 0.013 26.2 12.2 115 120-255 55-175 (304)
220 PRK08703 short chain dehydroge 31.3 49 0.0011 31.3 3.3 31 225-255 3-33 (239)
221 PRK08993 2-deoxy-D-gluconate 3 31.2 45 0.00098 32.1 3.1 31 225-255 7-37 (253)
222 PRK12744 short chain dehydroge 31.1 46 0.00099 32.0 3.1 30 225-254 5-34 (257)
223 PRK12937 short chain dehydroge 31.1 46 0.001 31.3 3.1 31 225-255 2-32 (245)
224 PRK08265 short chain dehydroge 31.0 45 0.00099 32.3 3.1 31 225-255 3-33 (261)
225 PRK05786 fabG 3-ketoacyl-(acyl 30.9 42 0.00092 31.5 2.8 31 225-255 2-32 (238)
226 PRK15181 Vi polysaccharide bio 30.8 40 0.00087 34.5 2.8 32 223-254 10-41 (348)
227 PRK06300 enoyl-(acyl carrier p 30.8 44 0.00095 34.1 3.1 32 224-255 4-37 (299)
228 PLN02730 enoyl-[acyl-carrier-p 30.6 49 0.0011 33.9 3.4 33 223-255 4-38 (303)
229 PRK06500 short chain dehydroge 30.5 47 0.001 31.4 3.0 30 226-255 4-33 (249)
230 PRK05579 bifunctional phosphop 30.4 67 0.0014 34.6 4.5 46 210-255 168-231 (399)
231 PRK07035 short chain dehydroge 30.4 47 0.001 31.7 3.0 31 225-255 5-35 (252)
232 PRK06125 short chain dehydroge 30.2 52 0.0011 31.6 3.3 31 225-255 4-34 (259)
233 PRK06198 short chain dehydroge 30.2 48 0.001 31.7 3.1 30 225-254 3-32 (260)
234 PRK06194 hypothetical protein; 30.1 46 0.00099 32.5 3.0 31 225-255 3-33 (287)
235 PRK08594 enoyl-(acyl carrier p 30.0 48 0.001 32.3 3.1 31 225-255 4-36 (257)
236 PRK07060 short chain dehydroge 30.0 51 0.0011 31.1 3.2 32 224-255 5-36 (245)
237 PF00208 ELFV_dehydrog: Glutam 29.9 40 0.00087 33.7 2.6 62 207-270 6-75 (244)
238 cd06282 PBP1_GntR_like_2 Ligan 29.8 1.2E+02 0.0025 28.6 5.6 53 111-168 10-63 (266)
239 PF00670 AdoHcyase_NAD: S-aden 29.8 51 0.0011 31.4 3.1 43 212-255 6-49 (162)
240 PRK05866 short chain dehydroge 29.7 50 0.0011 33.1 3.2 33 223-255 35-67 (293)
241 KOG1201|consensus 29.6 45 0.00097 34.8 2.9 30 224-253 34-63 (300)
242 PRK08226 short chain dehydroge 29.5 47 0.001 31.9 2.9 30 226-255 4-33 (263)
243 PRK06719 precorrin-2 dehydroge 29.5 36 0.00078 31.6 2.0 31 224-255 9-39 (157)
244 KOG3135|consensus 29.3 1.4E+02 0.003 29.1 5.9 49 102-153 2-50 (203)
245 PLN02520 bifunctional 3-dehydr 29.3 4.3E+02 0.0094 29.4 10.7 129 107-254 256-404 (529)
246 PRK12939 short chain dehydroge 29.2 52 0.0011 31.0 3.1 30 226-255 5-34 (250)
247 PRK06200 2,3-dihydroxy-2,3-dih 29.0 48 0.001 31.9 2.9 30 226-255 4-33 (263)
248 PRK07067 sorbitol dehydrogenas 28.9 51 0.0011 31.6 3.0 30 226-255 4-33 (257)
249 PRK08589 short chain dehydroge 28.9 51 0.0011 32.2 3.1 31 225-255 3-33 (272)
250 PLN02253 xanthoxin dehydrogena 28.7 52 0.0011 32.0 3.1 31 225-255 15-45 (280)
251 TIGR02622 CDP_4_6_dhtase CDP-g 28.6 47 0.001 33.8 2.9 30 226-255 2-31 (349)
252 PRK06114 short chain dehydroge 28.1 55 0.0012 31.4 3.1 31 225-255 5-35 (254)
253 PRK12747 short chain dehydroge 28.1 57 0.0012 31.2 3.2 30 226-255 2-31 (252)
254 PRK12825 fabG 3-ketoacyl-(acyl 28.1 54 0.0012 30.5 3.0 30 226-255 4-33 (249)
255 cd06298 PBP1_CcpA_like Ligand- 28.0 1.3E+02 0.0028 28.4 5.6 59 105-167 3-62 (268)
256 TIGR00035 asp_race aspartate r 28.0 1.5E+02 0.0032 28.9 6.1 82 29-118 6-90 (229)
257 PF13241 NAD_binding_7: Putati 27.9 30 0.00066 29.5 1.2 31 224-255 3-33 (103)
258 PRK06113 7-alpha-hydroxysteroi 27.9 55 0.0012 31.4 3.1 31 225-255 8-38 (255)
259 cd06285 PBP1_LacI_like_7 Ligan 27.8 1.7E+02 0.0038 27.7 6.5 53 111-168 10-63 (265)
260 PRK07806 short chain dehydroge 27.8 56 0.0012 31.0 3.1 30 226-255 4-33 (248)
261 PRK06505 enoyl-(acyl carrier p 27.7 52 0.0011 32.5 2.9 30 226-255 5-36 (271)
262 PRK03515 ornithine carbamoyltr 27.6 7.5E+02 0.016 26.1 12.5 128 103-255 47-184 (336)
263 PRK05854 short chain dehydroge 27.6 50 0.0011 33.4 2.8 31 225-255 11-41 (313)
264 PRK06197 short chain dehydroge 27.6 52 0.0011 32.8 2.9 31 225-255 13-43 (306)
265 PRK06182 short chain dehydroge 27.5 52 0.0011 31.9 2.9 29 227-255 2-30 (273)
266 cd06309 PBP1_YtfQ_like Peripla 27.4 86 0.0019 30.0 4.3 52 111-167 10-62 (273)
267 cd06289 PBP1_MalI_like Ligand- 27.4 1.5E+02 0.0034 27.8 6.0 54 111-169 10-64 (268)
268 PRK06077 fabG 3-ketoacyl-(acyl 27.3 61 0.0013 30.6 3.2 30 226-255 4-33 (252)
269 PRK07577 short chain dehydroge 27.1 61 0.0013 30.3 3.2 29 227-255 2-30 (234)
270 COG0078 ArgF Ornithine carbamo 27.0 2E+02 0.0043 30.3 7.0 166 122-337 62-242 (310)
271 PRK07576 short chain dehydroge 27.0 57 0.0012 31.7 3.1 31 225-255 6-36 (264)
272 PRK07985 oxidoreductase; Provi 27.0 61 0.0013 32.4 3.3 31 225-255 46-76 (294)
273 PRK08277 D-mannonate oxidoredu 27.0 56 0.0012 31.8 3.0 32 224-255 6-37 (278)
274 PRK08063 enoyl-(acyl carrier p 27.0 59 0.0013 30.8 3.1 30 226-255 2-31 (250)
275 cd06320 PBP1_allose_binding Pe 26.9 1.5E+02 0.0032 28.4 5.8 60 104-167 2-64 (275)
276 PRK10339 DNA-binding transcrip 26.9 2.2E+02 0.0047 28.4 7.2 59 371-435 248-307 (327)
277 PRK10200 putative racemase; Pr 26.9 1.8E+02 0.0038 28.7 6.5 94 29-134 6-102 (230)
278 COG0403 GcvP Glycine cleavage 26.8 60 0.0013 35.6 3.3 64 116-188 175-238 (450)
279 PRK08278 short chain dehydroge 26.6 58 0.0013 31.9 3.0 31 225-255 3-33 (273)
280 PRK08220 2,3-dihydroxybenzoate 26.4 63 0.0014 30.6 3.1 32 224-255 4-35 (252)
281 PRK00856 pyrB aspartate carbam 26.4 7.4E+02 0.016 25.7 13.1 121 115-254 56-184 (305)
282 COG0153 GalK Galactokinase [Ca 26.2 1.9E+02 0.0042 31.3 6.9 83 212-325 99-195 (390)
283 PRK12367 short chain dehydroge 26.0 53 0.0012 32.2 2.6 31 225-255 11-41 (245)
284 PRK12936 3-ketoacyl-(acyl-carr 25.9 66 0.0014 30.2 3.2 30 225-254 3-32 (245)
285 PF00731 AIRC: AIR carboxylase 25.9 3.1E+02 0.0068 25.8 7.5 66 102-174 1-69 (150)
286 PRK07814 short chain dehydroge 25.8 65 0.0014 31.2 3.2 31 225-255 7-37 (263)
287 cd06288 PBP1_sucrose_transcrip 25.7 2.1E+02 0.0046 26.9 6.7 53 112-169 12-65 (269)
288 cd01538 PBP1_ABC_xylose_bindin 25.5 2E+02 0.0043 28.1 6.5 61 104-168 2-63 (288)
289 cd06291 PBP1_Qymf_like Ligand 25.5 1.5E+02 0.0032 28.1 5.5 60 105-170 3-64 (265)
290 PLN02240 UDP-glucose 4-epimera 25.4 58 0.0013 32.8 2.9 31 225-255 2-32 (352)
291 PRK05476 S-adenosyl-L-homocyst 25.4 78 0.0017 34.5 3.9 45 209-254 192-237 (425)
292 PRK08945 putative oxoacyl-(acy 25.2 64 0.0014 30.7 3.0 31 225-255 9-39 (247)
293 PRK12743 oxidoreductase; Provi 25.0 60 0.0013 31.2 2.8 29 227-255 1-29 (256)
294 TIGR00521 coaBC_dfp phosphopan 24.9 1.1E+02 0.0024 32.8 5.0 49 208-256 162-229 (390)
295 cd06308 PBP1_sensor_kinase_lik 24.8 1.9E+02 0.0041 27.6 6.1 63 104-171 2-67 (270)
296 PRK09135 pteridine reductase; 24.8 70 0.0015 30.0 3.1 30 226-255 4-33 (249)
297 PRK07533 enoyl-(acyl carrier p 24.8 74 0.0016 30.9 3.4 32 224-255 6-39 (258)
298 PRK11181 23S rRNA (guanosine-2 24.8 3.8E+02 0.0082 26.7 8.4 46 120-176 37-82 (244)
299 cd06312 PBP1_ABC_sugar_binding 24.8 1.2E+02 0.0026 29.0 4.8 59 104-167 2-64 (271)
300 PF00532 Peripla_BP_1: Peripla 24.7 3E+02 0.0065 27.4 7.7 77 84-165 103-185 (279)
301 cd06273 PBP1_GntR_like_1 This 24.7 1.9E+02 0.0041 27.4 6.1 51 112-167 11-62 (268)
302 PLN00141 Tic62-NAD(P)-related 24.7 58 0.0013 31.5 2.6 31 225-255 14-44 (251)
303 cd06305 PBP1_methylthioribose_ 24.7 1.6E+02 0.0036 27.9 5.7 56 111-171 10-66 (273)
304 PRK07478 short chain dehydroge 24.6 72 0.0016 30.5 3.2 31 225-255 3-33 (254)
305 PRK14106 murD UDP-N-acetylmura 24.6 52 0.0011 34.9 2.4 28 225-253 2-29 (450)
306 PRK12938 acetyacetyl-CoA reduc 24.6 69 0.0015 30.3 3.1 30 226-255 1-30 (246)
307 cd01536 PBP1_ABC_sugar_binding 24.4 1.6E+02 0.0034 27.5 5.4 59 104-167 2-62 (267)
308 PRK07889 enoyl-(acyl carrier p 24.4 67 0.0015 31.2 3.0 30 226-255 5-36 (256)
309 KOG2882|consensus 24.4 1.1E+02 0.0025 32.0 4.7 64 121-190 116-181 (306)
310 PRK08303 short chain dehydroge 24.4 61 0.0013 32.8 2.8 31 225-255 5-35 (305)
311 PF13407 Peripla_BP_4: Peripla 24.3 1.4E+02 0.003 28.3 5.1 58 112-175 10-70 (257)
312 PRK07666 fabG 3-ketoacyl-(acyl 24.3 72 0.0016 30.1 3.1 30 226-255 5-34 (239)
313 PLN02572 UDP-sulfoquinovose sy 24.2 60 0.0013 34.9 2.8 31 225-255 44-74 (442)
314 PF06558 SecM: Secretion monit 24.2 78 0.0017 29.9 3.2 67 368-439 40-109 (148)
315 PRK07424 bifunctional sterol d 23.7 67 0.0015 34.6 3.0 32 224-255 174-205 (406)
316 PRK05993 short chain dehydroge 23.4 57 0.0012 32.0 2.3 29 227-255 3-31 (277)
317 PRK06914 short chain dehydroge 23.4 73 0.0016 30.9 3.0 29 227-255 2-30 (280)
318 cd06324 PBP1_ABC_sugar_binding 23.4 2.4E+02 0.0052 27.9 6.8 53 112-167 12-65 (305)
319 PRK12935 acetoacetyl-CoA reduc 23.3 77 0.0017 30.0 3.1 31 225-255 3-33 (247)
320 PLN02986 cinnamyl-alcohol dehy 23.2 58 0.0012 32.6 2.3 29 226-254 3-31 (322)
321 cd05311 NAD_bind_2_malic_enz N 23.1 1E+02 0.0022 30.3 3.9 42 212-254 9-50 (226)
322 PLN02989 cinnamyl-alcohol dehy 23.0 62 0.0013 32.3 2.5 28 227-254 4-31 (325)
323 PRK08643 acetoin reductase; Va 22.8 75 0.0016 30.3 2.9 28 228-255 2-29 (256)
324 COG2200 Rtn c-di-GMP phosphodi 22.7 3.6E+02 0.0077 26.8 7.8 76 86-172 137-242 (256)
325 COG1028 FabG Dehydrogenases wi 22.6 79 0.0017 30.0 3.0 30 225-254 2-31 (251)
326 PLN02686 cinnamoyl-CoA reducta 22.5 60 0.0013 33.7 2.4 32 224-255 49-80 (367)
327 cd06290 PBP1_LacI_like_9 Ligan 22.5 2E+02 0.0043 27.2 5.8 59 104-167 2-62 (265)
328 cd06275 PBP1_PurR Ligand-bindi 22.5 2.7E+02 0.0059 26.3 6.7 52 112-168 11-63 (269)
329 PLN02583 cinnamoyl-CoA reducta 22.4 65 0.0014 32.2 2.5 30 226-255 4-33 (297)
330 PRK01438 murD UDP-N-acetylmura 22.4 70 0.0015 34.4 2.9 34 219-253 7-40 (480)
331 PLN02662 cinnamyl-alcohol dehy 22.4 54 0.0012 32.5 1.9 28 227-254 3-30 (322)
332 PRK06139 short chain dehydroge 22.2 70 0.0015 32.9 2.8 30 225-254 4-33 (330)
333 PF01488 Shikimate_DH: Shikima 22.2 60 0.0013 29.0 2.0 37 217-254 1-37 (135)
334 TIGR03589 PseB UDP-N-acetylglu 22.1 68 0.0015 32.6 2.6 27 226-252 2-28 (324)
335 cd06317 PBP1_ABC_sugar_binding 22.1 1.8E+02 0.0039 27.6 5.4 52 111-167 11-63 (275)
336 COG1521 Pantothenate kinase ty 22.0 2.3E+02 0.0049 28.9 6.2 95 6-113 124-223 (251)
337 cd00578 L-fuc_L-ara-isomerases 21.6 1.9E+02 0.0041 31.1 6.0 64 102-171 1-74 (452)
338 PRK07326 short chain dehydroge 21.6 91 0.002 29.2 3.2 30 226-255 4-33 (237)
339 COG0426 FpaA Uncharacterized f 21.5 1.1E+03 0.023 25.7 12.1 119 103-235 248-369 (388)
340 TIGR01470 cysG_Nterm siroheme 21.4 61 0.0013 31.4 2.0 126 224-366 5-137 (205)
341 cd06316 PBP1_ABC_sugar_binding 21.3 2.8E+02 0.0061 26.9 6.7 55 112-171 11-66 (294)
342 cd01542 PBP1_TreR_like Ligand- 21.3 2.8E+02 0.006 26.1 6.5 52 112-168 11-63 (259)
343 PRK11267 biopolymer transport 21.3 1.9E+02 0.0041 26.3 5.1 56 73-134 75-130 (141)
344 PRK07453 protochlorophyllide o 21.3 78 0.0017 31.8 2.8 30 226-255 4-33 (322)
345 cd06284 PBP1_LacI_like_6 Ligan 21.2 2.3E+02 0.005 26.6 5.9 54 111-169 10-64 (267)
346 PRK05473 hypothetical protein; 21.2 94 0.002 26.8 2.8 41 178-222 26-70 (86)
347 COG2217 ZntA Cation transport 20.8 64 0.0014 37.4 2.3 80 78-178 533-613 (713)
348 PRK07791 short chain dehydroge 20.8 84 0.0018 31.2 2.9 30 226-255 4-33 (286)
349 PLN02427 UDP-apiose/xylose syn 20.7 75 0.0016 32.9 2.6 30 223-252 9-38 (386)
350 TIGR01963 PHB_DH 3-hydroxybuty 20.7 80 0.0017 29.8 2.6 28 228-255 1-28 (255)
351 COG2084 MmsB 3-hydroxyisobutyr 20.6 36 0.00079 35.1 0.3 35 2-36 85-128 (286)
352 PLN02214 cinnamoyl-CoA reducta 20.6 73 0.0016 32.6 2.5 30 226-255 8-37 (342)
353 PRK07370 enoyl-(acyl carrier p 20.6 1E+02 0.0022 30.0 3.4 31 225-255 3-35 (258)
354 PRK12748 3-ketoacyl-(acyl-carr 20.5 98 0.0021 29.7 3.2 31 225-255 2-34 (256)
355 cd06303 PBP1_LuxPQ_Quorum_Sens 20.4 1.7E+02 0.0037 28.3 5.0 60 104-167 2-67 (280)
356 PRK12859 3-ketoacyl-(acyl-carr 20.4 1E+02 0.0022 29.8 3.3 31 225-255 3-35 (256)
357 PF08937 DUF1863: MTH538 TIR-l 20.4 2.6E+02 0.0056 24.7 5.7 53 82-143 59-111 (130)
358 KOG1205|consensus 20.3 77 0.0017 32.7 2.6 29 225-253 9-37 (282)
359 PLN02206 UDP-glucuronate decar 20.2 73 0.0016 34.4 2.5 31 223-253 114-144 (442)
360 PLN02896 cinnamyl-alcohol dehy 20.2 64 0.0014 32.9 2.0 31 223-253 5-35 (353)
361 PRK06718 precorrin-2 dehydroge 20.1 70 0.0015 30.9 2.1 38 329-366 100-137 (202)
362 PRK10355 xylF D-xylose transpo 20.1 2.2E+02 0.0048 29.0 5.9 63 100-167 24-88 (330)
363 PRK09291 short chain dehydroge 20.0 87 0.0019 29.8 2.7 28 228-255 2-29 (257)
No 1
>KOG0693|consensus
Probab=100.00 E-value=6.5e-66 Score=518.38 Aligned_cols=251 Identities=52% Similarity=0.816 Sum_probs=216.6
Q ss_pred HHHHhhcCCCCCCCCCCccchHHhhc---CCCCcccCCHH-----HHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHh
Q psy4615 177 RAVCNAVAPHKDVDGFNIVNVGRFCL---DLKTLIPCTPL-----GVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLL 248 (477)
Q Consensus 177 ~~l~~aI~p~KDVDGl~p~nlg~l~~---g~~~f~PcTa~-----Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL 248 (477)
++|++.| ++|-+-++|+++.+++. |++ |+--.|. |+++|+++.++=+.|-|.+ -| .+-+.+.|...|
T Consensus 248 enl~~si--~~~~~EisPStifA~AsilEg~~-yiNGSPQNTfVPGlielA~~~~vfigGDDfK-SG-QTK~KSvlvdFL 322 (512)
T KOG0693|consen 248 ENLLESI--EKDESEISPSTIFAIASILEGCP-YINGSPQNTFVPGLIELAERHNVFIGGDDFK-SG-QTKMKSVLVDFL 322 (512)
T ss_pred HHHHHHH--hcCccccChHHHHHHHHHHcCCC-cccCCCccccchhHHHHHHHhCceecccccc-cc-chhHHHHHHHHH
Confidence 4566666 34555677888777662 544 2211222 8999999999988888887 77 344566777766
Q ss_pred hhCCCCccccceEEccCCCCCChhHHHHHH---HH---HHHHHHHHhhhccCCCchhhHhhhcccccCCCCCCCCceeEE
Q psy4615 249 HADGAGVSEVAGYITPVPGGVGPMTVAMLM---KN---TILAAKHAVIYNISKSNVVDDMVASNSILYRPGEKPDHTVVI 322 (477)
Q Consensus 249 ~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~---~N---~l~a~~~~~sk~iSK~~v~~~~~~~~~~ly~~~~~~~h~v~I 322 (477)
... |+.|+++++++ +| +|+++++|||||||||+|+|||+++|.+||.+||+|||||+|
T Consensus 323 Vga----------------GiKp~SIvSYNHLGNNDG~NLSap~qFRSKEISKSnVvDDmv~SN~iLy~pge~pDH~vVI 386 (512)
T KOG0693|consen 323 VGA----------------GIKPTSIVSYNHLGNNDGMNLSAPQQFRSKEISKSNVVDDMVASNGILYEPGEHPDHCVVI 386 (512)
T ss_pred hcc----------------CCCceeEeeeccccCCCcccccchhhhhhhhcchhhhhHHHHhcCCcccCCCCCCCeEEEE
Confidence 443 55555555554 22 799999999999999999999999999999999999999999
Q ss_pred EeecCCCCccccccccceeeeeccceeEEeecccccchhhhhHHHHHHHHHHHhhhhcccCCCccccccccchHHHHHhh
Q psy4615 323 KYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYL 402 (477)
Q Consensus 323 ~Y~p~~Gd~K~a~d~~~~~~flG~~~~i~~~~~c~DSlLAaPLilDL~~l~~~~~r~~~~~~~~~~~~~~~~vl~~Ls~~ 402 (477)
||||++||+|||||||+||+||||+|||.+||+||||||||||||||++|+|||+|++|+.+++..+..||+|+++|||+
T Consensus 387 KYvpyVgDSKrAmDEYtsei~mGG~ntiviHNtCEDSLLA~PlilDL~lltEl~tRvs~k~~de~k~~~FhpVltlLSyl 466 (512)
T KOG0693|consen 387 KYVPYVGDSKRAMDEYTSEIFMGGKNTIVIHNTCEDSLLAAPLILDLVLLTELSTRVSFKAEDEGKFHSFHPVLTLLSYL 466 (512)
T ss_pred EecccccchhhHHHHHHHHHhhCCcceEEEeccchHhhhhhhHHHHHHHHHHHhhheEeeecCCCCccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987777888899999999999
Q ss_pred hcCCCCCCCCchhchHHHHHHHHHHHHHHhcCCCCCCccccceecc
Q psy4615 403 CKAPLVPPGTPVVNALAQQRSCIENILRACLSLPPENSMTLEHKLP 448 (477)
Q Consensus 403 fK~P~~~~g~~~~~~l~~Q~~~l~~~~~~~~g~~~~~~~~~~~~~~ 448 (477)
||||++|||++++|+|+|||++|+|++|+|.|+||++||.+||++.
T Consensus 467 ~KAPlvppGtpvvNal~kQra~lenilracvGlpp~n~m~lE~~~~ 512 (512)
T KOG0693|consen 467 LKAPLVPPGTPVVNALSKQRAMLENILRACVGLPPENNMILEFKLL 512 (512)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHHHHHHHhcCCCCccceeeeeecC
Confidence 9999999999999999999999999999999999999999999863
No 2
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=100.00 E-value=4e-63 Score=491.29 Aligned_cols=215 Identities=44% Similarity=0.669 Sum_probs=206.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
++||||++|+++++++++++++++++++++|+|++|++|+||+|+.|+++|.|+|+++||.++ .++||+++ ||+ +
T Consensus 1 ~~idGk~lA~~i~~~lk~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~-~~~l~~~~-t~~eLl~ 78 (283)
T COG0190 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASE-LYDLPEDI-TEEELLA 78 (283)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeE-EEeCCCcC-CHHHHHH
Confidence 479999999999999999999999988999999999999999999999999999999999999 99999999 888 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFG 228 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~G 228 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.+.+.|.||||+||++||++|++++.|
T Consensus 79 ~I~~l--N~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~G 156 (283)
T COG0190 79 LIDEL--NADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRG 156 (283)
T ss_pred HHHHh--cCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 88899 9999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred CeEEEECCCCCcchHHHHHhhhCCC-------------------------------------------------------
Q psy4615 229 KNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------- 253 (477)
Q Consensus 229 k~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------- 253 (477)
|++||||||++||+|+|.||.++|+
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~~~k 236 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVNDGK 236 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCccccCCc
Confidence 9999999999999999999988877
Q ss_pred --------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy4615 254 --------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVI 290 (477)
Q Consensus 254 --------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~s 290 (477)
++.++|+|+|||||||||||++||++|++.+++++..
T Consensus 237 l~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~~ 281 (283)
T COG0190 237 LVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG 281 (283)
T ss_pred eEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999999986653
No 3
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.5e-63 Score=492.81 Aligned_cols=216 Identities=41% Similarity=0.668 Sum_probs=206.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++|+++++++|+|++|++|+||+|..|+++|+|.|+++||+++ .++||+++ +|+
T Consensus 1 ~~~il~Gk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~~l 78 (288)
T PRK14171 1 MNNIIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTL-LVNLSTTI-HTNDL 78 (288)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 57899999999999999999999999886799999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCC-CCcccCCHHHHHHHHHHhCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDL-KTLIPCTPLGVQELIRRYKVE 225 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~-~~f~PcTa~Av~~Lle~~gi~ 225 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|. +.|.||||+||++||++|+++
T Consensus 79 ~~~I~~L--N~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i~ 156 (288)
T PRK14171 79 ISKINEL--NLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEPN 156 (288)
T ss_pred HHHHHHH--cCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCCC
Confidence 788888 9999999999999999999999999999999999999999999999996 889999999999999999999
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCC----------------------------------------------------
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGA---------------------------------------------------- 253 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a---------------------------------------------------- 253 (477)
++||+++|+|||++||+|||+||.++++
T Consensus 157 l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~ 236 (288)
T PRK14171 157 LTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS 236 (288)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccC
Confidence 9999999999999999999999988888
Q ss_pred -----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHh
Q psy4615 254 -----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289 (477)
Q Consensus 254 -----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~ 289 (477)
++.++|+|+|||||||||+|++||++|++.+++++.
T Consensus 237 ~gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 283 (288)
T PRK14171 237 GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFKDSL 283 (288)
T ss_pred CCCeECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999886543
No 4
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.6e-62 Score=490.61 Aligned_cols=213 Identities=44% Similarity=0.670 Sum_probs=204.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
+|||||++|++|++++++++++|+++++++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+ +
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~~l~~ 79 (286)
T PRK14184 2 LLLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSE-AFRLPADT-TQEELED 79 (286)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 589999999999999999999999886799999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFG 228 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~G 228 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|+++++|
T Consensus 80 ~I~~l--N~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i~l~G 157 (286)
T PRK14184 80 LIAEL--NARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYGLSPAG 157 (286)
T ss_pred HHHHH--hCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 88888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEECCCCCcchHHHHHhhh----CCC---------------------------------------------------
Q psy4615 229 KNAVVCGRSKNVGMPIAMLLHA----DGA--------------------------------------------------- 253 (477)
Q Consensus 229 k~vvViGrS~~VGkPLA~lL~~----~~a--------------------------------------------------- 253 (477)
|+++|+|||++||+|||+||.+ +++
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~ 237 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRT 237 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeecc
Confidence 9999999999999999999998 777
Q ss_pred -----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 -----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 -----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|||||||||||+|++||++|++.++++.
T Consensus 238 ~~~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~~~ 283 (286)
T PRK14184 238 DDGLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWKER 283 (286)
T ss_pred CCCccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999988654
No 5
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.7e-62 Score=489.78 Aligned_cols=215 Identities=42% Similarity=0.656 Sum_probs=205.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++|+||++|++|++++++++++|+++ +++|+|++|++|+|++|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~il~Gk~iA~~i~~~ik~~i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~el 77 (284)
T PRK14170 1 MGEIIDGKKLAKEIQEKVTREVAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSV-LIELPENV-TEEKL 77 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 6889999999999999999999999877 589999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++||+++
T Consensus 78 ~~~I~~l--N~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l 155 (284)
T PRK14170 78 LSVVEEL--NEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQI 155 (284)
T ss_pred HHHHHHH--hCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 888888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|+|||++||+|||+||.++++
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~~ 235 (284)
T PRK14170 156 EGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDEN 235 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccCC
Confidence 999999999999999999999998888
Q ss_pred ----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHh
Q psy4615 254 ----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289 (477)
Q Consensus 254 ----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~ 289 (477)
++.++|+|+|||||||||+|++||++|++.+++++.
T Consensus 236 gkl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~ 281 (284)
T PRK14170 236 NKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRIW 281 (284)
T ss_pred CCeecccchHHHHhhccEecCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 356789999999999999999999999999986543
No 6
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.5e-62 Score=489.12 Aligned_cols=217 Identities=46% Similarity=0.700 Sum_probs=207.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-
Q psy4615 69 NKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS- 147 (477)
Q Consensus 69 ~ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e- 147 (477)
||+++|+||++|++|++++++++++|+++ +++|+|++|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~e 77 (284)
T PRK14190 1 MMAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSE-LYEFPADI-TEEE 77 (284)
T ss_pred CCCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHH
Confidence 46779999999999999999999999877 589999999999999999999999999999999999 99999999 777
Q ss_pred --hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCC
Q psy4615 148 --KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVE 225 (477)
Q Consensus 148 --~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~ 225 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|+++
T Consensus 78 l~~~I~~l--N~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~i~ 155 (284)
T PRK14190 78 LLALIDRL--NADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYNID 155 (284)
T ss_pred HHHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcCCC
Confidence 788888 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCC----------------------------------------------------
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGA---------------------------------------------------- 253 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a---------------------------------------------------- 253 (477)
++||+++|+|||.+||+|||+||.++++
T Consensus 156 l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~ 235 (284)
T PRK14190 156 ISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLE 235 (284)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccC
Confidence 9999999999999999999999998888
Q ss_pred -----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy4615 254 -----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVI 290 (477)
Q Consensus 254 -----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~s 290 (477)
++.++|+|+|||||||||+|++||++|++.+++++.+
T Consensus 236 ~gkl~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~ 283 (284)
T PRK14190 236 NGKLCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAGG 283 (284)
T ss_pred CCCeeccCcHHHHhhhceEecCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999999999999999999877554
No 7
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.1e-62 Score=487.12 Aligned_cols=213 Identities=36% Similarity=0.637 Sum_probs=205.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---
Q psy4615 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS--- 147 (477)
Q Consensus 71 a~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e--- 147 (477)
+++||||++|++|++++++++++|+++++++|+||+|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 3 ~~ildGk~ia~~i~~~lk~~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-s~~el~ 80 (284)
T PRK14177 3 PILLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSE-MIRLKEQT-TTEELL 80 (284)
T ss_pred CeEeEhHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHH
Confidence 6799999999999999999999999888889999999999999999999999999999999999 99999998 777
Q ss_pred hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCC
Q psy4615 148 KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETF 227 (477)
Q Consensus 148 ~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~ 227 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++|+++++
T Consensus 81 ~~I~~l--N~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~i~l~ 158 (284)
T PRK14177 81 GVIDKL--NLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYGIDVT 158 (284)
T ss_pred HHHHHH--hCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhCCCCC
Confidence 788888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCC------------------------------------------------------
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------ 253 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------ 253 (477)
||+++|+|||++||+|||+||.++++
T Consensus 159 Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~~~~G 238 (284)
T PRK14177 159 GKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGNVG 238 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcccccC
Confidence 99999999999999999999998888
Q ss_pred -----CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 -----GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 -----~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
++.++|+|||||||||||+|++||++|++.++++
T Consensus 239 DVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~ 277 (284)
T PRK14177 239 DIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFKE 277 (284)
T ss_pred CcCHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999988743
No 8
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=5.4e-62 Score=489.07 Aligned_cols=225 Identities=40% Similarity=0.613 Sum_probs=210.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++++++++++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~el 78 (297)
T PRK14186 1 MALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASF-GKHLPADT-SQAEV 78 (297)
T ss_pred CCEEeehHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 67899999999999999999999999887799999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++||+++
T Consensus 79 ~~~I~~l--N~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i~l 156 (297)
T PRK14186 79 EALIAQL--NQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQIDI 156 (297)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 888888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|+|||++||+|||+||.++++
T Consensus 157 ~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~~ 236 (297)
T PRK14186 157 AGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPS 236 (297)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccccc
Confidence 999999999999999999999988888
Q ss_pred --------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCchhhHh
Q psy4615 254 --------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDM 302 (477)
Q Consensus 254 --------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~iSK~~v~~~~ 302 (477)
++.++|+|+|||||||||+|++||++|++.+++++. ++.+-++++
T Consensus 237 ~~~~gkl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~----~~~~~~~~~ 295 (297)
T PRK14186 237 SDGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRH----GLSSTLNDL 295 (297)
T ss_pred cccCCceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhh----Ccchhhhhc
Confidence 234679999999999999999999999999986543 444444443
No 9
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.3e-62 Score=486.72 Aligned_cols=212 Identities=38% Similarity=0.597 Sum_probs=202.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|+++++++++++++++..+|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~ildGk~iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~el 78 (278)
T PRK14172 1 MGQIINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFK-KIKLDESI-SEEDL 78 (278)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 67899999999999999999999998876457999999999999999999999999999999999 99999999 787
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 79 ~~~I~~l--N~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~i~l 156 (278)
T PRK14172 79 INEIEEL--NKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLNIDI 156 (278)
T ss_pred HHHHHHH--hCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCC
Confidence 788888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|+|||.+||+|||+||.++++
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~g 236 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG 236 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccCC
Confidence 999999999999999999999988888
Q ss_pred ---------CccccceEEccCCCCCChhHHHHHHHHHHHHH
Q psy4615 254 ---------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAA 285 (477)
Q Consensus 254 ---------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~ 285 (477)
++.++|+|||||||||||+|++||++|++.++
T Consensus 237 kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~ 277 (278)
T PRK14172 237 KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKNVCEAL 277 (278)
T ss_pred ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999764
No 10
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.3e-62 Score=487.78 Aligned_cols=216 Identities=43% Similarity=0.622 Sum_probs=205.3
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++|++++|++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~ildGk~va~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~e~~l 78 (294)
T PRK14187 1 ETNIIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSE-TILLPSTI-SESSL 78 (294)
T ss_pred CcEEeehHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 67899999999999999999999999886799999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCC--CCcccCCHHHHHHHHHHhCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDL--KTLIPCTPLGVQELIRRYKV 224 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~--~~f~PcTa~Av~~Lle~~gi 224 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|. +.|.||||+||++||++|++
T Consensus 79 ~~~I~~l--N~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i 156 (294)
T PRK14187 79 IEKINEL--NNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITR 156 (294)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCC
Confidence 788888 9999999999999999999999999999999999999999999999986 58999999999999999999
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC---------------------------------------------------
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA--------------------------------------------------- 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a--------------------------------------------------- 253 (477)
+++||+++|+|||++||+|||+||.++++
T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~ 236 (294)
T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSI 236 (294)
T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccc
Confidence 99999999999999999999999998888
Q ss_pred ---------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHh
Q psy4615 254 ---------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289 (477)
Q Consensus 254 ---------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~ 289 (477)
++.++|+|+|||||||||+|++||++|++.+++++.
T Consensus 237 ~~~~~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 287 (294)
T PRK14187 237 EEGGVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQK 287 (294)
T ss_pred CCCCccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 145679999999999999999999999999986643
No 11
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=8.9e-62 Score=484.49 Aligned_cols=213 Identities=38% Similarity=0.609 Sum_probs=203.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---
Q psy4615 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS--- 147 (477)
Q Consensus 71 a~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e--- 147 (477)
+.|||||++|++|++++++++++|+++ |++|+|++|++|+|++|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~el~ 77 (282)
T PRK14169 1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSL-MFRLPEAT-TQADLL 77 (282)
T ss_pred CeeeehHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHH
Confidence 468999999999999999999999877 689999999999999999999999999999999999 99999999 777
Q ss_pred hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCC
Q psy4615 148 KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETF 227 (477)
Q Consensus 148 ~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~ 227 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++|+++++
T Consensus 78 ~~I~~l--N~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l~ 155 (282)
T PRK14169 78 AKVAEL--NHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWANEPTVVASTPYGIMALLDAYDIDVA 155 (282)
T ss_pred HHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhCCCCC
Confidence 788888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCC------------------------------------------------------
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------ 253 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------ 253 (477)
||+++|+|||++||+|||+||.++++
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~~g 235 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADG 235 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccCCC
Confidence 99999999999999999999998888
Q ss_pred ---------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 ---------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 ---------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|+|||||||||+|++||++|++.++++.
T Consensus 236 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 279 (282)
T PRK14169 236 KLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKRR 279 (282)
T ss_pred CeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999988653
No 12
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=100.00 E-value=1.2e-61 Score=486.64 Aligned_cols=217 Identities=43% Similarity=0.676 Sum_probs=206.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-
Q psy4615 69 NKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS- 147 (477)
Q Consensus 69 ~ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e- 147 (477)
-|+++||||++|++|++++++++++|+++.|++|+|++|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 7 ~~~~ildGk~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-s~~e 84 (299)
T PLN02516 7 HVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSF-DVDLPENI-SEAE 84 (299)
T ss_pred ccCeEeehHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHH
Confidence 378899999999999999999999999887899999999999999999999999999999999999 99999999 777
Q ss_pred --hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcC--CCCcccCCHHHHHHHHHHhC
Q psy4615 148 --KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLD--LKTLIPCTPLGVQELIRRYK 223 (477)
Q Consensus 148 --~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g--~~~f~PcTa~Av~~Lle~~g 223 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.| .+.|.||||+||++||++|+
T Consensus 85 l~~~I~~l--N~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~ 162 (299)
T PLN02516 85 LISKVHEL--NANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSG 162 (299)
T ss_pred HHHHHHHH--hCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhC
Confidence 788888 999999999999999999999999999999999999999999999986 67899999999999999999
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCC--------------------------------------------------
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGA-------------------------------------------------- 253 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a-------------------------------------------------- 253 (477)
++++||+++|||||.+||+|||+||.++|+
T Consensus 163 i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 163 IPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNA 242 (299)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccc
Confidence 999999999999999999999999998888
Q ss_pred -------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHh
Q psy4615 254 -------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289 (477)
Q Consensus 254 -------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~ 289 (477)
++.++|+|+|||||||||+|+++|++|++.+++++.
T Consensus 243 ~~~~~~~~g~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 297 (299)
T PLN02516 243 VSDPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVF 297 (299)
T ss_pred cCcccccCCCceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 145679999999999999999999999999987654
No 13
>PLN02438 inositol-3-phosphate synthase
Probab=100.00 E-value=1.3e-62 Score=514.99 Aligned_cols=262 Identities=48% Similarity=0.710 Sum_probs=242.5
Q ss_pred CCCCcHHHHHhhcCCCCCCCCCCccchHHhhc---CCC--CcccCCHH--HHHHHHHHhCCCCCCCeEEEECCCCCcchH
Q psy4615 171 PEHMVERAVCNAVAPHKDVDGFNIVNVGRFCL---DLK--TLIPCTPL--GVQELIRRYKVETFGKNAVVCGRSKNVGMP 243 (477)
Q Consensus 171 P~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~---g~~--~f~PcTa~--Av~~Lle~~gi~l~Gk~vvViGrS~~VGkP 243 (477)
+.|-+.+++.++|.-..+ -++|+.++++++ |++ +++|++.. |+.+++++.|+++.|.|.+ .| .+.+.+-
T Consensus 242 ~~~~t~~~l~~ai~~~~~--eispS~~YA~AAl~eG~~fVNgsP~~t~vP~~~elA~~~gvpi~GDD~K-SG-qT~~ksv 317 (510)
T PLN02438 242 GLNDTMENLLASIEKDEA--EISPSTLYALACILEGVPFINGSPQNTFVPGVIELAVKKNSLIGGDDFK-SG-QTKMKSV 317 (510)
T ss_pred cccCCHHHHHHHHhcCCC--cCChHHHHHHHHHHcCCCeEecCCccccChhhHHHHHHcCCCEeccccc-CC-CchhHHH
Confidence 557788899999975544 599999998884 665 45553323 8999999999999999998 78 8899999
Q ss_pred HHHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCchhhHhhhcccccCCCCCCCCceeEEE
Q psy4615 244 IAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDMVASNSILYRPGEKPDHTVVIK 323 (477)
Q Consensus 244 LA~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~iSK~~v~~~~~~~~~~ly~~~~~~~h~v~I~ 323 (477)
|+.||..||..+.+|++ +++.|+-.. -+|+++++++||++||++|++||+++|.+||+++++++|+++|+
T Consensus 318 La~~l~~RGlkv~s~~s--~N~lGN~Dg--------~nLs~p~~~~SKeiSKs~vV~dil~~~~~ly~~g~~~~h~v~I~ 387 (510)
T PLN02438 318 LVDFLVGAGIKPTSIVS--YNHLGNNDG--------MNLSAPQTFRSKEISKSNVVDDMVASNSILYEPGEHPDHVVVIK 387 (510)
T ss_pred HHHHHHHcCCceeeEEE--EeccCcchh--------hhhCCHhHhhhhhhhHHHHHHHHHcccccccccCCCCceEeecc
Confidence 99999999999999888 888887765 36889999999999999999999999999999999999999999
Q ss_pred eecCCCCccccccccceeeeeccceeEEeecccccchhhhhHHHHHHHHHHHhhhhcccCCCccccccccchHHHHHhhh
Q psy4615 324 YVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLC 403 (477)
Q Consensus 324 Y~p~~Gd~K~a~d~~~~~~flG~~~~i~~~~~c~DSlLAaPLilDL~~l~~~~~r~~~~~~~~~~~~~~~~vl~~Ls~~f 403 (477)
|||++||+|+|||||++++|||++|+|++||+|+||+|||||||||+||+++|+|+|++++++.+|++|++|+++|||||
T Consensus 388 YvP~lGD~K~A~d~~~~~~FlG~~~~i~~~~~ceDS~lAAPlvlDLvrla~la~R~~~~~~~~~~~~~~~~v~~~lsy~~ 467 (510)
T PLN02438 388 YVPYVGDSKRAMDEYTSEIFMGGKNTIVMHNTCEDSLLAAPIILDLVLLAELSTRIQLKAEGEEKFHSFHPVATLLSYLT 467 (510)
T ss_pred ccCcCCCcEEEEEEEEeeecCCCceEEEEEEEEecchhhHHHHHHHHHHHHHHHhhccccccccccccccchhhHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred cCCCCCCCCchhchHHHHHHHHHHHHHHhcCCCCCCcccccee
Q psy4615 404 KAPLVPPGTPVVNALAQQRSCIENILRACLSLPPENSMTLEHK 446 (477)
Q Consensus 404 K~P~~~~g~~~~~~l~~Q~~~l~~~~~~~~g~~~~~~~~~~~~ 446 (477)
|+||+++|++++|+||+||++|+||+|+|.||+|++||+|||+
T Consensus 468 KaPl~~~G~~~~~~l~~Q~~~L~n~~r~~~gl~~~~~~~le~~ 510 (510)
T PLN02438 468 KAPLVPPGTPVVNALAKQRAMLENILRACVGLAPENNMLLEYK 510 (510)
T ss_pred cCCCCCCCCCccchHHHHHHHHHHHHHHHhCCCCCCcccccCC
Confidence 9999999999999999999999999999999999999999986
No 14
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-61 Score=483.43 Aligned_cols=216 Identities=44% Similarity=0.651 Sum_probs=207.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++|++++++++++|++|+|++|++|+|++|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~ildGk~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~~l 78 (284)
T PRK14179 1 MTEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSE-VVRLPETI-SQEEL 78 (284)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 57899999999999999999999999887799999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 79 ~~~I~~l--N~d~~V~GIivqlPlp~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l 156 (284)
T PRK14179 79 LDLIERY--NQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYNVEL 156 (284)
T ss_pred HHHHHHH--hCCCCCCEEEEcCCCCCCCCHHHHHhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCC
Confidence 888888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|||||.+||+|+|.||.++|+
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~~ 236 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDEN 236 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecCC
Confidence 999999999999999999999988877
Q ss_pred ----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHh
Q psy4615 254 ----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289 (477)
Q Consensus 254 ----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~ 289 (477)
++.++|+|||||||||||+|++||++|++.+++++.
T Consensus 237 gkl~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 282 (284)
T PRK14179 237 GKLIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALRSL 282 (284)
T ss_pred CCeecCccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 367789999999999999999999999999987654
No 15
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.1e-61 Score=495.32 Aligned_cols=216 Identities=45% Similarity=0.658 Sum_probs=204.7
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++++++.+++|+|++|+||+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 72 ~~~ildGk~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~-~~~lpe~~-te~el 149 (364)
T PLN02616 72 GAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSF-EVRLPEDS-TEQEV 149 (364)
T ss_pred cCeEeEhHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 46799999999999999999999999887799999999999999999999999999999999999 99999999 776
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcC--CCCcccCCHHHHHHHHHHhCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLD--LKTLIPCTPLGVQELIRRYKV 224 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g--~~~f~PcTa~Av~~Lle~~gi 224 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| .+.|.||||+||++||++|++
T Consensus 150 l~~I~~L--N~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i 227 (364)
T PLN02616 150 LKFISGF--NNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNV 227 (364)
T ss_pred HHHHHHH--cCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCC
Confidence 788888 999999999999999999999999999999999999999999999986 778999999999999999999
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC---------------------------------------------------
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA--------------------------------------------------- 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a--------------------------------------------------- 253 (477)
+++||++||||||++||+|||+||.++|+
T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~ 307 (364)
T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPV 307 (364)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEecccccc
Confidence 99999999999999999999999988888
Q ss_pred ------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHh
Q psy4615 254 ------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289 (477)
Q Consensus 254 ------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~ 289 (477)
++.++|+|||||||||||||++||++|++.+++++.
T Consensus 308 ~~~~~~~g~klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~ 361 (364)
T PLN02616 308 EDASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIH 361 (364)
T ss_pred ccccccCCCeEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 244578999999999999999999999999986543
No 16
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.5e-61 Score=485.79 Aligned_cols=217 Identities=38% Similarity=0.566 Sum_probs=205.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++|+||++|++|++++++++++++++ |++|+|++|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~il~Gk~vA~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~el 77 (297)
T PRK14167 1 MTEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAI-DVEIDPDA-PAEEL 77 (297)
T ss_pred CCeEEeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 6789999999999999999999999876 589999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 78 ~~~I~~l--N~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~l 155 (297)
T PRK14167 78 YDTIDEL--NADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLVAGDARFKPCTPHGIQKLLAAAGVDT 155 (297)
T ss_pred HHHHHHH--hCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhCCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 888888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhC----CC-------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHAD----GA------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~----~a------------------------------------------------- 253 (477)
+||+++|+|||++||+|||+||.++ ++
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin 235 (297)
T PRK14167 156 EGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGIN 235 (297)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEcccc
Confidence 9999999999999999999999988 66
Q ss_pred -------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhh
Q psy4615 254 -------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIY 291 (477)
Q Consensus 254 -------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk 291 (477)
++.++|+|+|||||||||+|++||++|++.+++++.+-
T Consensus 236 ~~~~~~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 292 (297)
T PRK14167 236 RVDADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV 292 (297)
T ss_pred ccCcccccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 13356899999999999999999999999998765543
No 17
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.8e-61 Score=482.32 Aligned_cols=211 Identities=40% Similarity=0.660 Sum_probs=201.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
+|||||++|++|++++++++++|+++ |++|+|++|++|+||+|..|+++|+|.|+++||+++ .++||+++ +|+ +
T Consensus 2 ~il~Gk~~a~~i~~~l~~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-t~~~l~~ 78 (282)
T PRK14166 2 TLLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSL-VYHLNENT-TQNELLA 78 (282)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 58999999999999999999999877 589999999999999999999999999999999999 99999998 777 7
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcC-CCCcccCCHHHHHHHHHHhCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLD-LKTLIPCTPLGVQELIRRYKVETF 227 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g-~~~f~PcTa~Av~~Lle~~gi~l~ 227 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.| .+.|.||||+||++||++|+++++
T Consensus 79 ~I~~l--N~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i~l~ 156 (282)
T PRK14166 79 LINTL--NHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLE 156 (282)
T ss_pred HHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCCCCC
Confidence 88888 999999999999999999999999999999999999999999999999 578999999999999999999999
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCC------------------------------------------------------
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------ 253 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------ 253 (477)
||+++|+|||.+||+|||+||.++++
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~~g 236 (282)
T PRK14166 157 GKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG 236 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccCCC
Confidence 99999999999999999999988888
Q ss_pred ---------CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 ---------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 ---------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
++.++|+|+|||||||||+|++||++|++.++++
T Consensus 237 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~ 279 (282)
T PRK14166 237 KIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKN 279 (282)
T ss_pred CeeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999998765
No 18
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=100.00 E-value=1.2e-61 Score=493.08 Aligned_cols=215 Identities=40% Similarity=0.601 Sum_probs=203.8
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|++|||||++|++|++++++++++++++.+++|+|++|+||+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 55 ~~~ildGk~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~-~~~l~~~~-te~el 132 (345)
T PLN02897 55 KTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSL-LAELPEDC-TEGQI 132 (345)
T ss_pred cceEeehHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEE-EEECCCCC-CHHHH
Confidence 57899999999999999999999999886799999999999999999999999999999999999 99999999 887
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcC--CCCcccCCHHHHHHHHHHhCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLD--LKTLIPCTPLGVQELIRRYKV 224 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g--~~~f~PcTa~Av~~Lle~~gi 224 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.| .+.|.||||+||++||++|++
T Consensus 133 l~~I~~l--N~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i 210 (345)
T PLN02897 133 LSALRKF--NEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGV 210 (345)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCC
Confidence 788888 999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC---------------------------------------------------
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA--------------------------------------------------- 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a--------------------------------------------------- 253 (477)
+++||++||||||++||+|||+||.++++
T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~ 290 (345)
T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPV 290 (345)
T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEcccccc
Confidence 99999999999999999999999988888
Q ss_pred ------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 ------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 ------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|||||||||||||++||++|++.+++++
T Consensus 291 ~~~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~ 343 (345)
T PLN02897 291 EDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRI 343 (345)
T ss_pred ccccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 13356899999999999999999999999988654
No 19
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-61 Score=482.82 Aligned_cols=216 Identities=39% Similarity=0.684 Sum_probs=207.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
+|||||++|++|++++++++++|+++.|++|+|++|++|+|++|..|+++|+|+|+++||+++ .++||+++ +|+ +
T Consensus 2 ~il~Gk~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~el~~ 79 (285)
T PRK14191 2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSD-LHTLQENT-TEAELLS 79 (285)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 589999999999999999999998887899999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFG 228 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~G 228 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|+++++|
T Consensus 80 ~I~~l--N~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~l~G 157 (285)
T PRK14191 80 LIKDL--NTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYHIEIKG 157 (285)
T ss_pred HHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhCCCCCC
Confidence 88888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEECCCCCcchHHHHHhhhCCC-------------------------------------------------------
Q psy4615 229 KNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------- 253 (477)
Q Consensus 229 k~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------- 253 (477)
|+++|+|||++||+|+|.||.++++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~~gk 237 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDGR 237 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeecccccCCc
Confidence 9999999999999999999998888
Q ss_pred --------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhh
Q psy4615 254 --------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIY 291 (477)
Q Consensus 254 --------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk 291 (477)
++.++|+|||||||||||+|++||++|++.+++++.+|
T Consensus 238 lvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 283 (285)
T PRK14191 238 LVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAEKRQRK 283 (285)
T ss_pred eeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999999887766
No 20
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.8e-61 Score=482.04 Aligned_cols=212 Identities=42% Similarity=0.618 Sum_probs=202.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
++||||++|++|++++++++++|+++ |++|+||+|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+ +
T Consensus 2 ~ildGk~iA~~i~~~ik~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-t~~~l~~ 78 (282)
T PRK14182 2 NLIDGKQIAAKVKGEVATEVRALAAR-GVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSV-EHHLPATT-TQAELLA 78 (282)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 58999999999999999999999877 589999999999999999999999999999999999 99999999 777 7
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCC-cccCCHHHHHHHHHHhCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKT-LIPCTPLGVQELIRRYKVETF 227 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~-f~PcTa~Av~~Lle~~gi~l~ 227 (477)
.|++| |+|++|||||||+|||+|+|+.+++++|+|.||||||||.|+|+++.|.+. |.||||+||++||++|+++++
T Consensus 79 ~I~~l--N~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~~i~l~ 156 (282)
T PRK14182 79 LIARL--NADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEARVDPK 156 (282)
T ss_pred HHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHhCCCCC
Confidence 88888 999999999999999999999999999999999999999999999999876 999999999999999999999
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCC------------------------------------------------------
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------ 253 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------ 253 (477)
||+++|+|||++||+|||+||.++++
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~~g 236 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG 236 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecCCC
Confidence 99999999999999999999988887
Q ss_pred ---------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 ---------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 ---------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|+|||||||||+|++||++|++.+++++
T Consensus 237 kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~ 280 (282)
T PRK14182 237 KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKRT 280 (282)
T ss_pred CeeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999987654
No 21
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-61 Score=482.51 Aligned_cols=214 Identities=39% Similarity=0.627 Sum_probs=204.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+.+|+||++|++|+++++++++.++++ +++|+|++|++|+|++|..|+++|.|+|+++||+++ .++||+++ +|+
T Consensus 2 ~~~il~Gk~va~~i~~~l~~~v~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-t~~el 78 (284)
T PRK14193 2 TAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSI-RRDLPADA-TQEEL 78 (284)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 5679999999999999999999999877 589999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 79 ~~~I~~l--N~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~l 156 (284)
T PRK14193 79 NAVIDEL--NADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYDVEL 156 (284)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhCCCC
Confidence 788888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhh--CCC---------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHA--DGA--------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~--~~a--------------------------------------------------- 253 (477)
+||+++|+|||.+||+|||+||.+ +++
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~ 236 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRA 236 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEcccccc
Confidence 999999999999999999999988 677
Q ss_pred -----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 -----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 -----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|+|||||||||+|+++|++|++.+++++
T Consensus 237 ~~gkl~GDvd~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 282 (284)
T PRK14193 237 GDGKLVGDVHPDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERR 282 (284)
T ss_pred CCCcEEeecCHhHHhhCCEEeCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 46678999999999999999999999999988653
No 22
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2e-61 Score=482.77 Aligned_cols=216 Identities=43% Similarity=0.661 Sum_probs=206.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++++++ |++|+|++|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 2 ~~~ildGk~va~~i~~~lk~~i~~l~~~-g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~~l 78 (285)
T PRK14189 2 TAQLIDGNALSKQLRAEAAQRAAALTAR-GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSL-KDRYPADL-SEAEL 78 (285)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 3679999999999999999999999876 589999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 79 ~~~I~~l--N~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i~l 156 (285)
T PRK14189 79 LARIDEL--NRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIGIPL 156 (285)
T ss_pred HHHHHHH--cCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcCCCC
Confidence 888888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|+|||.+||+|||+||.++++
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~~ 236 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDA 236 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccCC
Confidence 999999999999999999999988887
Q ss_pred ----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy4615 254 ----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVI 290 (477)
Q Consensus 254 ----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~s 290 (477)
++.++|+|+|||||||||+|+++|++|++.++++..+
T Consensus 237 gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~~ 283 (285)
T PRK14189 237 GKLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA 283 (285)
T ss_pred CCeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 4677899999999999999999999999999877654
No 23
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.1e-61 Score=483.76 Aligned_cols=213 Identities=45% Similarity=0.710 Sum_probs=202.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
+|||||++|++|++++++++++|+++.+++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+ +
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~el~~ 79 (293)
T PRK14185 2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSS-LIRYESDV-TEEELLA 79 (293)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 589999999999999999999999887799999999999999999999999999999999999 99999999 777 7
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFG 228 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~G 228 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++|+++++|
T Consensus 80 ~I~~l--N~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~i~l~G 157 (293)
T PRK14185 80 KVREL--NQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSIGLPCFVSATPNGILELLKRYHIETSG 157 (293)
T ss_pred HHHHH--hCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 88888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEECCCCCcchHHHHHhhhC----CC---------------------------------------------------
Q psy4615 229 KNAVVCGRSKNVGMPIAMLLHAD----GA--------------------------------------------------- 253 (477)
Q Consensus 229 k~vvViGrS~~VGkPLA~lL~~~----~a--------------------------------------------------- 253 (477)
|+++|+|||++||+|||+||.++ ++
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~ 237 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRV 237 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCccc
Confidence 99999999999999999999988 56
Q ss_pred ------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 ------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 ------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|+|||||||||+|++||++|++.++++.
T Consensus 238 ~~~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 290 (293)
T PRK14185 238 PDATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA 290 (293)
T ss_pred ccccccCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 23457899999999999999999999999987654
No 24
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=1.9e-61 Score=482.91 Aligned_cols=215 Identities=39% Similarity=0.625 Sum_probs=205.8
Q ss_pred hccccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH
Q psy4615 68 ANKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS 147 (477)
Q Consensus 68 ~~ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e 147 (477)
.+|++|||||++|++|+++++++++.++++.+++|+||+|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 5 ~~~~~ildGk~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~ 82 (287)
T PRK14176 5 SYESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAE-DQFLPADT-TQE 82 (287)
T ss_pred ccceEEEEhHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHH
Confidence 3578999999999999999999999998886799999999999999999999999999999999999 99999999 777
Q ss_pred ---hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCC
Q psy4615 148 ---KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKV 224 (477)
Q Consensus 148 ---~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi 224 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++|+++|++
T Consensus 83 el~~~I~~L--N~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~PcTp~av~~ll~~~~i 160 (287)
T PRK14176 83 ELLELIDSL--NKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKLMIGDEGLVPCTPHGVIRALEEYGV 160 (287)
T ss_pred HHHHHHHHH--hCCCCCCeEEEcCCCCCCCCHHHHHhccCccccccccChhhhhhHhcCCCCCCCCcHHHHHHHHHHcCC
Confidence 888888 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC---------------------------------------------------
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA--------------------------------------------------- 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a--------------------------------------------------- 253 (477)
+++||+++|+|||.+||+|||+||.++++
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~ 240 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKE 240 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEeccccc
Confidence 99999999999999999999999998888
Q ss_pred -----------CccccceEEccCCCCCChhHHHHHHHHHHHHHH
Q psy4615 254 -----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 286 (477)
Q Consensus 254 -----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~ 286 (477)
++.++|+|+|||||||||+|+++|++|++.+++
T Consensus 241 ~gkl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~ 284 (287)
T PRK14176 241 EDKVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAE 284 (287)
T ss_pred CCCccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999998874
No 25
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.6e-61 Score=480.70 Aligned_cols=212 Identities=44% Similarity=0.704 Sum_probs=202.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
+|||||++|++|+++++++++.|+++.|++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+ +
T Consensus 2 ~ildGk~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~~l~~ 79 (281)
T PRK14183 2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSI-THEMPSTI-SQKEILE 79 (281)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 589999999999999999999998644799999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFG 228 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~G 228 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|+|||||+||.|+|+++.|.+.|.||||+||++||++|+++++|
T Consensus 80 ~I~~l--N~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~i~l~G 157 (281)
T PRK14183 80 TIAMM--NNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYEIDVKG 157 (281)
T ss_pred HHHHH--hCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcCCCCCC
Confidence 88888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEECCCCCcchHHHHHhhhCCC-------------------------------------------------------
Q psy4615 229 KNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------- 253 (477)
Q Consensus 229 k~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------- 253 (477)
|+++|+|||++||+|+|+||.++++
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~~gk 237 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDGR 237 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccCCCC
Confidence 9999999999999999999998888
Q ss_pred --------CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 --------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 --------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
++.++|+|+|||||||||+|++||++|++.++++
T Consensus 238 l~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~ 279 (281)
T PRK14183 238 LVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAKN 279 (281)
T ss_pred eECCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999999988754
No 26
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.7e-61 Score=481.03 Aligned_cols=213 Identities=40% Similarity=0.614 Sum_probs=203.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
.|||||++|++|++++++++++++++++++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+ +
T Consensus 2 ~ildGk~va~~i~~~lk~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~el~~ 79 (282)
T PRK14180 2 ILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQ-VITLPEHT-TESELLE 79 (282)
T ss_pred ceeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 479999999999999999999999876799999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcC-CCCcccCCHHHHHHHHHHhCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLD-LKTLIPCTPLGVQELIRRYKVETF 227 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g-~~~f~PcTa~Av~~Lle~~gi~l~ 227 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.| .+.|.||||+||++||++|+++++
T Consensus 80 ~I~~l--N~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i~l~ 157 (282)
T PRK14180 80 LIDQL--NNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTE 157 (282)
T ss_pred HHHHH--hCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCCCCC
Confidence 88999 999999999999999999999999999999999999999999999999 588999999999999999999999
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCC------------------------------------------------------
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------ 253 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------ 253 (477)
||+++|+|||.+||+|||+||.+++|
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~gk 237 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDGK 237 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccCCc
Confidence 99999999999999999999998888
Q ss_pred --------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 --------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 --------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|+|||||||||+|++||++|++.+++.+
T Consensus 238 l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~ 280 (282)
T PRK14180 238 IVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQEL 280 (282)
T ss_pred eeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999987653
No 27
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.4e-61 Score=482.51 Aligned_cols=217 Identities=45% Similarity=0.682 Sum_probs=205.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|+++++++++++++++|++|+|++|++|+||+|..|++.|+|+|+++||+++ .++||+++ +|+
T Consensus 2 ~~~ildGk~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-t~~el 79 (297)
T PRK14168 2 SAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEI-QDNQSVDI-TEEEL 79 (297)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 36799999999999999999999999887799999999999999999999999999999999999 99999999 787
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCC--CCcccCCHHHHHHHHHHhCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDL--KTLIPCTPLGVQELIRRYKV 224 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~--~~f~PcTa~Av~~Lle~~gi 224 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|. +.|.||||+||++||++||+
T Consensus 80 ~~~I~~l--N~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i 157 (297)
T PRK14168 80 LALIDKY--NNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGV 157 (297)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCC
Confidence 888888 9999999999999999999999999999999999999999999999986 58999999999999999999
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhC----CC-----------------------------------------------
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHAD----GA----------------------------------------------- 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~----~a----------------------------------------------- 253 (477)
+++||+++|+|||.+||+|||+||.++ ++
T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvG 237 (297)
T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVG 237 (297)
T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecC
Confidence 999999999999999999999999988 66
Q ss_pred -C---------------------ccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy4615 254 -G---------------------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVI 290 (477)
Q Consensus 254 -~---------------------v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~s 290 (477)
+ +.++|+|+|||||||||+|++||++|++.+++++.+
T Consensus 238 in~~~~~~~~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~ 296 (297)
T PRK14168 238 VNRVGTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLS 296 (297)
T ss_pred CCccCccccCCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 1 345689999999999999999999999999876643
No 28
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.9e-61 Score=478.30 Aligned_cols=214 Identities=43% Similarity=0.685 Sum_probs=205.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---
Q psy4615 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS--- 147 (477)
Q Consensus 71 a~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e--- 147 (477)
+++||||++|++|++++++++++|+++++++|+|++|+||+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 3 ~~ildGk~va~~i~~~lk~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-s~~el~ 80 (285)
T PRK10792 3 AKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSR-SYDLPETT-SEAELL 80 (285)
T ss_pred CeEeeHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHH
Confidence 6799999999999999999999999887889999999999999999999999999999999999 99999998 777
Q ss_pred hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCC
Q psy4615 148 KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETF 227 (477)
Q Consensus 148 ~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~ 227 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++++++|+++++
T Consensus 81 ~~I~~l--N~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~l~ 158 (285)
T PRK10792 81 ALIDEL--NADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERYGIDTY 158 (285)
T ss_pred HHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhHHhCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 788888 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCC------------------------------------------------------
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------ 253 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------ 253 (477)
||+++|+|||.+||+|||+||.++++
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~~g 238 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDG 238 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcccccccCC
Confidence 99999999999999999999988888
Q ss_pred ---------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 ---------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 ---------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|+|||||||||+|+++|++|++.+++++
T Consensus 239 k~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~ 282 (285)
T PRK10792 239 KLVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEY 282 (285)
T ss_pred CcCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 35568999999999999999999999999988654
No 29
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=9e-61 Score=478.07 Aligned_cols=210 Identities=40% Similarity=0.636 Sum_probs=198.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
++||||++|++|++++++++++| +++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+ +
T Consensus 1 ~ildGk~iA~~i~~~~k~~v~~l----~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-t~~el~~ 74 (287)
T PRK14181 1 MLLKGAPAAEHILATIKENISAS----STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSK-AHRLPSDA-TLSDILK 74 (287)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHh----CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 47999999999999999999988 579999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCC-CCcccCCHHHHHHHHHHhCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDL-KTLIPCTPLGVQELIRRYKVETF 227 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~-~~f~PcTa~Av~~Lle~~gi~l~ 227 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+|+.|. +.|.||||+||++||++|+++++
T Consensus 75 ~I~~l--N~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~~i~l~ 152 (287)
T PRK14181 75 LIHRL--NNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYYEIPLH 152 (287)
T ss_pred HHHHH--hCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHhCCCCC
Confidence 88888 9999999999999999999999999999999999999999999999997 68999999999999999999999
Q ss_pred CCeEEEECCCCCcchHHHHHhhhC----CC-------------------------------------------------C
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHAD----GA-------------------------------------------------G 254 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~----~a-------------------------------------------------~ 254 (477)
||+++|+|||.+||+|||+||.++ ++ .
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccc
Confidence 999999999999999999999998 67 1
Q ss_pred -------------------ccccceEEccCCCCCChhHHHHHHHHHHHHHHHHh
Q psy4615 255 -------------------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289 (477)
Q Consensus 255 -------------------v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~ 289 (477)
+.++|+|+|||||||||+|++||++|++.+++++.
T Consensus 233 ~~~~~~~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~ 286 (287)
T PRK14181 233 VPAANPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLRHS 286 (287)
T ss_pred cccccCCCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHHHHHHHHhhc
Confidence 23478999999999999999999999999886543
No 30
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=2.6e-60 Score=477.73 Aligned_cols=223 Identities=41% Similarity=0.582 Sum_probs=209.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++++++ +++|+|++|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 3 ~~~il~Gk~iA~~i~~~lk~~i~~l~~~-g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-t~~~l 79 (301)
T PRK14194 3 SAKLIDGKAAAARVLAQVREDVRTLKAA-GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSL-EHRLPADT-SQARL 79 (301)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 4679999999999999999999999877 589999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 80 ~~~I~~l--N~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i~l 157 (301)
T PRK14194 80 LALIAEL--NADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCGDL 157 (301)
T ss_pred HHHHHHH--cCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCCCC
Confidence 888888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|||||.+||+|+|.+|..+|+
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~~ 237 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDD 237 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccCC
Confidence 999999999999999999999987777
Q ss_pred -------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCc
Q psy4615 254 -------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSN 297 (477)
Q Consensus 254 -------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~iSK~~ 297 (477)
++.++|+|+|||||||||+|+++|++|++.+++++...--|.+.
T Consensus 238 ~g~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~~~~~~~~ 294 (301)
T PRK14194 238 DGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHAQRSQSE 294 (301)
T ss_pred CCCcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 23457899999999999999999999999999877666655554
No 31
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=4.2e-60 Score=475.48 Aligned_cols=215 Identities=43% Similarity=0.641 Sum_probs=202.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
.|||||++|++|+++++++++++++++|++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+ +
T Consensus 2 ~il~Gk~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~el~~ 79 (295)
T PRK14174 2 LIIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNST-VIELPADT-TEEHLLK 79 (295)
T ss_pred EEEeHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 479999999999999999999999887799999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCC--CCcccCCHHHHHHHHHHhCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDL--KTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~--~~f~PcTa~Av~~Lle~~gi~l 226 (477)
.|++| |+|++|||||||+|||+|+|+..++++|+|+||||||||.|+|+++.|. +.|.||||+||++||++|++++
T Consensus 80 ~I~~l--N~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l 157 (295)
T PRK14174 80 KIEDL--NNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIET 157 (295)
T ss_pred HHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCC
Confidence 88888 9999999999999999999999999999999999999999999999986 7899999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhh----CCC------------------------------------------------C
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHA----DGA------------------------------------------------G 254 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~----~~a------------------------------------------------~ 254 (477)
+||+++|+|||.+||+|||+||.+ +++ +
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGIN 237 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeecc
Confidence 999999999999999999999987 566 1
Q ss_pred ---------------------ccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy4615 255 ---------------------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVI 290 (477)
Q Consensus 255 ---------------------v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~s 290 (477)
+.++|+|+|||||||||+|++||++|++.+++++.+
T Consensus 238 ~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~~ 294 (295)
T PRK14174 238 RIEDPSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNN 294 (295)
T ss_pred ccccccccCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 335689999999999999999999999999876543
No 32
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.9e-60 Score=473.71 Aligned_cols=211 Identities=41% Similarity=0.626 Sum_probs=199.4
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|++||+||++|++|++++++++++++ ++|+|++|++|+|++|..|+++|+|+|+++||+++ .++||+++ +|+
T Consensus 2 ~~~il~Gk~vA~~i~~~l~~~v~~l~----~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~el 75 (287)
T PRK14173 2 AARELSGPPAAEAVYAELRARLAKLP----FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQ-VEVLPEST-SQEEL 75 (287)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHhC----CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 36799999999999999999999883 78999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 76 ~~~I~~l--N~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~i~l 153 (287)
T PRK14173 76 LELIARL--NADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYGIPL 153 (287)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 788888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-------------------------------------------------C---
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA-------------------------------------------------G--- 254 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a-------------------------------------------------~--- 254 (477)
+||+++|+|||++||+|||+||.++++ .
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~~ 233 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGG 233 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCccccC
Confidence 999999999999999999999988887 1
Q ss_pred --------------ccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 255 --------------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 255 --------------v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
+.++|+|+|||||||||+|+++|++|++.+++++
T Consensus 234 ~~gk~~l~GDVd~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 281 (287)
T PRK14173 234 NGGRDILTGDVHPEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALRR 281 (287)
T ss_pred CCCceeeeccccHhHHhhCcEEecCCCChhHHHHHHHHHHHHHHHHHH
Confidence 2346899999999999999999999999987653
No 33
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=7.1e-60 Score=472.05 Aligned_cols=213 Identities=44% Similarity=0.716 Sum_probs=203.8
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++|+++ |++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+
T Consensus 2 ~~~il~Gk~ia~~i~~~~~~~v~~l~~~-g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~~l 78 (286)
T PRK14175 2 VAKILDGKQIAKDYRQGLQDQVEALKEK-GFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISE-IVHLEETA-TEEEV 78 (286)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 4679999999999999999999999876 589999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|.||||||||.|+|+++.|.+.|.||||+||++|+++|++++
T Consensus 79 ~~~I~~l--N~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i~l 156 (286)
T PRK14175 79 LNELNRL--NNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHADIDL 156 (286)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhHhcCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 888888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|+|||.+||+|+|.||.++|+
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~~ 236 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDEN 236 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCCC
Confidence 999999999999999999999988887
Q ss_pred ----------CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 ----------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 ----------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
++.++++|+|||||||||+|+++|++|++.++++
T Consensus 237 gkl~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~~ 280 (286)
T PRK14175 237 GKLKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKM 280 (286)
T ss_pred CCeecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999998865
No 34
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3e-59 Score=465.80 Aligned_cols=208 Identities=42% Similarity=0.655 Sum_probs=199.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
+|||||++|++|+++++++++++ +++|+|++|++|+||+|..|+++|+|+|+++||+++ .++||+++ +|+ +
T Consensus 1 ~il~Gk~~a~~i~~~~~~~v~~l----g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~-~~~el~~ 74 (279)
T PRK14178 1 MILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSV-GIELPGDA-TTRTVLE 74 (279)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHh----CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHHHH
Confidence 48999999999999999999987 589999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFG 228 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~G 228 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|+++++|
T Consensus 75 ~I~~l--N~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~l~G 152 (279)
T PRK14178 75 RIRRL--NEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRLVSGLPGFAPCTPNGIMTLLHEYKISIAG 152 (279)
T ss_pred HHHHH--hCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence 88888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEECCCCCcchHHHHHhhhCCC-------------------------------------------------------
Q psy4615 229 KNAVVCGRSKNVGMPIAMLLHADGA------------------------------------------------------- 253 (477)
Q Consensus 229 k~vvViGrS~~VGkPLA~lL~~~~a------------------------------------------------------- 253 (477)
|+++|+|||.+||+|+|+||..+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~gkl 232 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNGKL 232 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccCCCC
Confidence 9999999999999999999988877
Q ss_pred -------CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 -------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 -------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
++.++++|+|||||||||+|+++|++|++.++++
T Consensus 233 ~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~ 273 (279)
T PRK14178 233 CGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAKM 273 (279)
T ss_pred cCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999988754
No 35
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=6.8e-59 Score=467.22 Aligned_cols=215 Identities=43% Similarity=0.628 Sum_probs=203.3
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++|+++++|+++++++|+|++|++|+||+|..|+++|.|+|+++||+++ .++||+++ +|+
T Consensus 1 ~~~il~Gk~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~-~~~el 78 (296)
T PRK14188 1 MATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASF-EHKLPADT-SQAEL 78 (296)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC-CHHHH
Confidence 57899999999999999999999998876799999999999999999999999999999999999 99999999 777
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++|||||||+|||+|+|+++++++|+|+||||||||.|+|+++.|.+.|.||||+||++||++|++++
T Consensus 79 ~~~i~~l--N~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i~~ 156 (296)
T PRK14188 79 LALIARL--NADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHGDL 156 (296)
T ss_pred HHHHHHH--hCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCC
Confidence 788888 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-------------------------------------------------C---
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA-------------------------------------------------G--- 254 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a-------------------------------------------------~--- 254 (477)
+||+++|+|||.+||+|+|.+|.++++ .
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~~ 236 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPA 236 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccCC
Confidence 999999999999999999999976665 1
Q ss_pred ------------------ccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 255 ------------------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 255 ------------------v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
+.++|+|+|||||||||+|+++|++|++.++++.
T Consensus 237 ~~~~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 288 (296)
T PRK14188 237 PEKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRA 288 (296)
T ss_pred ccccCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 2346889999999999999999999999988654
No 36
>KOG4230|consensus
Probab=100.00 E-value=4.4e-58 Score=482.13 Aligned_cols=277 Identities=40% Similarity=0.526 Sum_probs=250.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcC-CCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALG-HRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~-g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e- 147 (477)
++.||+||.+|+.+|+++++++++++++. +++|.|+|||||++++|..|+|+|.|+|+++||.+. .++||+++ ||-
T Consensus 2 ~a~IL~Gk~la~kvr~~v~~eI~~ik~~~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~-~iklPeti-Te~e 79 (935)
T KOG4230|consen 2 VAEILSGKELARKVREDVAEEIQSIKEHHPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAK-HIKLPETI-TEGE 79 (935)
T ss_pred cchhhccHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceE-EecCcccc-cHHH
Confidence 57899999999999999999999999877 899999999999999999999999999999999999 99999999 766
Q ss_pred --hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcC--CCCcccCCHHHHHHHHHHhC
Q psy4615 148 --KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLD--LKTLIPCTPLGVQELIRRYK 223 (477)
Q Consensus 148 --~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g--~~~f~PcTa~Av~~Lle~~g 223 (477)
..|..| |+|+.|||||||+|||.|+|++.+.++|+|+||||||++.|.|+|+.+ .+.|+||||.+||+|+++++
T Consensus 80 ll~~I~~l--NeD~tvHGiiVQLPLp~hide~~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~ 157 (935)
T KOG4230|consen 80 LLREIKAL--NEDPTVHGIIVQLPLPAHIDEDTVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAG 157 (935)
T ss_pred HHHHHHhc--cCCCccceEEEeccCccccchhhHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcC
Confidence 677778 999999999999999999999999999999999999999999999975 67999999999999999999
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCC--------------------------------------------------
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGA-------------------------------------------------- 253 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a-------------------------------------------------- 253 (477)
+.++||++||+|||.+||+|++.||.+.|+
T Consensus 158 v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINy 237 (935)
T KOG4230|consen 158 VFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINY 237 (935)
T ss_pred CccccceeEEEecccccCChHHHHHHhcCceEEEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccc
Confidence 999999999999999999999999988777
Q ss_pred -------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhh----------------------hc
Q psy4615 254 -------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVI----------------------YN 292 (477)
Q Consensus 254 -------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~s----------------------k~ 292 (477)
++.+++++||||||||||||+|||++|+++++++++. -+
T Consensus 238 vpD~~Kksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r~es~~~~~i~~~pl~l~tpvpsdid 317 (935)
T KOG4230|consen 238 VPDPSKKSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQREESKKKRKIDLLPLKLKTPVPSDID 317 (935)
T ss_pred cCCCCCcccceEeeecchHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHHHhccccCcCCCCccccCCCCCcccc
Confidence 6788999999999999999999999999999987764 34
Q ss_pred cCCCchhhHhhhcc---------cccCCCCC---------CCCceeEEEeecCCCCccccccccceeeeeccceeE
Q psy4615 293 ISKSNVVDDMVASN---------SILYRPGE---------KPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTI 350 (477)
Q Consensus 293 iSK~~v~~~~~~~~---------~~ly~~~~---------~~~h~v~I~Y~p~~Gd~K~a~d~~~~~~flG~~~~i 350 (477)
|||++-.+-|-++. -+||+..+ +..|.-.-+||-.-|.++|.+.|..|+..+|.-|.+
T Consensus 318 isrsq~pk~i~~la~e~gi~s~ele~yg~~kakv~l~v~erl~hr~dg~yvvvsgitptp~gegkst~t~glvqal 393 (935)
T KOG4230|consen 318 ISRSQEPKLIGQLAKELGIYSHELELYGHYKAKVNLAVLERLKHRKDGKYVVVSGITPTPLGEGKSTTTAGLVQAL 393 (935)
T ss_pred hhhccCcchHHHHHHHhchhhHHHHhhcchhhhcCHHHHHHHhccCCCcEEEEeccCCCCCCCCcchhHHHHHHHH
Confidence 57776665554432 34566422 457778899999999999999999999999877655
No 37
>KOG0089|consensus
Probab=100.00 E-value=6.7e-53 Score=413.14 Aligned_cols=214 Identities=48% Similarity=0.735 Sum_probs=204.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
++.+++||.+|+.+++++.++++.+++.++..|+|+.++||+||+|+.|+.+|.|+|+++||.+. .+.+|+.. +++
T Consensus 7 ~~~viagk~~a~~i~~~i~~e~~~~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~-~~~l~~~~-~~~~l 84 (309)
T KOG0089|consen 7 TAVVIAGKVAATFIRQEIANEVEGMKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSF-QYELPESE-SEDEL 84 (309)
T ss_pred ceEEEehhHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhccc-cccccccc-CHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999 99999998 776
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCC--CCcccCCHHHHHHHHHHhCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDL--KTLIPCTPLGVQELIRRYKV 224 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~--~~f~PcTa~Av~~Lle~~gi 224 (477)
+.|.++ |+|++|||||||+|+|.|++++.|+++++|+|||||||+.|+|+|+... +.|+||||.||++||+++||
T Consensus 85 ~~~i~~~--N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI 162 (309)
T KOG0089|consen 85 ESAIAEA--NNDPSVHGILVQLPVPQHIQEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGI 162 (309)
T ss_pred HHHHHHh--cCCCceeeEEEEeeccccccHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCC
Confidence 777888 9999999999999999999999999999999999999999999999864 46999999999999999999
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC---------------------------------------------------
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA--------------------------------------------------- 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a--------------------------------------------------- 253 (477)
++.||++||+|||++||+|+|+||++.|+
T Consensus 163 ~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga 242 (309)
T KOG0089|consen 163 ETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGA 242 (309)
T ss_pred eecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCc
Confidence 99999999999999999999999998876
Q ss_pred ----------------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 ----------------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 ----------------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
+++.+|+++||||||+||||+|||++|++.++++
T Consensus 243 ~vidvgin~v~dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~ 304 (309)
T KOG0089|consen 243 AVIDVGINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKR 304 (309)
T ss_pred eeEecCCCcccccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999874
No 38
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=100.00 E-value=3.1e-52 Score=417.08 Aligned_cols=214 Identities=39% Similarity=0.578 Sum_probs=204.2
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--
Q psy4615 70 KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-- 147 (477)
Q Consensus 70 ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-- 147 (477)
|+++||||++|++|++++++++++++++.+++|+|++|++|+||+|..|++.|.++|+++||+++ .+.||+++ +++
T Consensus 2 ~~~~l~gk~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~-~~~l~~~~-~~~~l 79 (283)
T PRK14192 2 MALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSL-KVELPQET-TTEQL 79 (283)
T ss_pred CCeEeeHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEE-EEECCCCC-CHHHH
Confidence 56799999999999999999999999887799999999999999999999999999999999999 99999998 666
Q ss_pred -hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCC
Q psy4615 148 -KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVET 226 (477)
Q Consensus 148 -~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l 226 (477)
+.|++| |+|++||||+||+|+|+|+++++++++|+|.|||||+|+.|.|+++.|.+.|.||||.|++++|++|++++
T Consensus 80 ~~~i~~L--n~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~~~~~~~~p~T~~gii~~L~~~~i~l 157 (283)
T PRK14192 80 LAKIEEL--NANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMRLLKAYNIEL 157 (283)
T ss_pred HHHHHHH--hCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccccCCCcccCCcHHHHHHHHHHcCCCC
Confidence 788999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCC-----------------------------------------------------
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGA----------------------------------------------------- 253 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a----------------------------------------------------- 253 (477)
+||+++|+|||.+||+|++.||..+++
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~~ 237 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDG 237 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecCC
Confidence 999999999999999999999988877
Q ss_pred ---------CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 ---------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 ---------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
++.++++|+|||||||||+|++||++|++.++++
T Consensus 238 ~~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n~~~~~~~ 280 (283)
T PRK14192 238 GGVGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEK 280 (283)
T ss_pred CCcccccHHHhhccceEeCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998865
No 39
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=99.98 E-value=1.5e-32 Score=278.24 Aligned_cols=211 Identities=20% Similarity=0.231 Sum_probs=169.9
Q ss_pred hhhccccCCCCCCccEEEEcCCCCCCCcHHH-HHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHH---HHHHHHHHhC
Q psy4615 148 KLINPMSIPISTGVSSHISQLPLPEHMVERA-VCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPL---GVQELIRRYK 223 (477)
Q Consensus 148 ~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~-l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~---Av~~Lle~~g 223 (477)
+.++.| +|.+++=++-.+|...+--.+. ...+|. .|..-. +++|..-. +..+++++.|
T Consensus 114 dv~~~l---k~~~~dVlvnylPvGs~~A~~~YA~AAl~-----aG~afV----------N~~P~~ia~~p~~a~~f~e~g 175 (351)
T TIGR03450 114 DVVQAL---KDAKVDVLVSYLPVGSEEADKFYAQCAID-----AGVAFV----------NALPVFIASDPEWAKKFTDAG 175 (351)
T ss_pred HHHHHH---HhcCCCEEEECCccchHHHHHHHHHHHHH-----cCCceE----------eccCccccCCHHHHHHHHHCC
Confidence 455555 4556777777888765443222 112221 133222 34553322 5777777999
Q ss_pred CCCCCCeEEE-ECCCCCcchHHHHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCchhhHh
Q psy4615 224 VETFGKNAVV-CGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDM 302 (477)
Q Consensus 224 i~l~Gk~vvV-iGrS~~VGkPLA~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~iSK~~v~~~~ 302 (477)
+++.|.|++= +| .+++-+-|+.||..||..+..|.+ +++.|+-.- -++..+++++||++||+++++++
T Consensus 176 lPi~GDD~Ksq~G-aTi~h~vLa~lf~~Rgl~v~~~yq--~NigGN~Df--------~nL~~~~r~~SK~iSKs~vV~s~ 244 (351)
T TIGR03450 176 VPIVGDDIKSQVG-ATITHRVLAKLFEDRGVRLDRTMQ--LNVGGNMDF--------KNMLERDRLESKKISKTQAVTSN 244 (351)
T ss_pred CCEecccccccCC-CchHHHHHHHHHHHcCCceeeEEE--EeecCcchh--------hhhCChhhhhhhhhhHHHHHHHH
Confidence 9999999873 57 889999999999999999988888 888887765 24677889999999999999999
Q ss_pred hhcccccCCCCCCCCceeEE---EeecCCCCccccccccceee--eeccceeEEeecccccchhhhhHHHHHHHHHHHhh
Q psy4615 303 VASNSILYRPGEKPDHTVVI---KYVPYVGDSKRALDEYTSEI--LLGGHNTISMHNTCEDSLLASPLILDLIILAELSS 377 (477)
Q Consensus 303 ~~~~~~ly~~~~~~~h~v~I---~Y~p~~Gd~K~a~d~~~~~~--flG~~~~i~~~~~c~DSlLAaPLilDL~~l~~~~~ 377 (477)
++ |.+ ..+|+|+| +|+|++||+| ||++++|| |+|.+|+|+++|+|+||.+||||||||+|++++|+
T Consensus 245 l~-----~~~--~~~~~v~IgPsdYvp~lgD~K--~~~i~ieG~~F~G~pm~le~~l~v~DSpnaAglviDlvR~~klA~ 315 (351)
T TIGR03450 245 LP-----DRP--LKDKNVHIGPSDHVGWLDDRK--WAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAK 315 (351)
T ss_pred hc-----cCC--CCCCcEEECCcCCCCcCCCcE--EEEEEEEhhhcCCceEEEEEEEEEecchhhHHHHHHHHHHHHHHH
Confidence 97 442 26899999 9999999999 99999999 99999999999999999999999999999999999
Q ss_pred hhcccCCCccccccccchHHHHHhhhcCC
Q psy4615 378 RIQFTSPTVAEYTYFHPVLSILSYLCKAP 406 (477)
Q Consensus 378 r~~~~~~~~~~~~~~~~vl~~Ls~~fK~P 406 (477)
|+|..| ++.+++|||||+|
T Consensus 316 drG~~G----------~v~~~ssf~fK~P 334 (351)
T TIGR03450 316 DRGIGG----------PVIPASSYLMKSP 334 (351)
T ss_pred hcCCCC----------cccchhhhhhcCC
Confidence 999998 4788899999999
No 40
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=99.97 E-value=1.3e-31 Score=236.35 Aligned_cols=114 Identities=39% Similarity=0.558 Sum_probs=98.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---h
Q psy4615 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---K 148 (477)
Q Consensus 72 ~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~ 148 (477)
+||+||++|+.|+++++++++.++++ |++|+|++|++|+|++|..|+++|+|.|+++||+++ .++||+++ +++ +
T Consensus 1 ~iL~Gk~va~~i~~~l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~-~~~l~~~~-~~~el~~ 77 (117)
T PF00763_consen 1 KILDGKPVAKEIKEELKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFE-LIELPEDI-SEEELLE 77 (117)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEE-EEEE-TTS-SHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceE-EEECCCCc-CHHHHHH
Confidence 48999999999999999999999988 699999999999999999999999999999999999 99999999 777 8
Q ss_pred hhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCC
Q psy4615 149 LINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVD 190 (477)
Q Consensus 149 ~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVD 190 (477)
.|++| |+|++|||||||+|||+|+|+++++++|+|.||||
T Consensus 78 ~i~~l--N~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVD 117 (117)
T PF00763_consen 78 LIEKL--NEDPSVHGILVQLPLPKHIDERKILEAIDPEKDVD 117 (117)
T ss_dssp HHHHH--HH-TT-SEEEEESSSSTTSHHHHHHHTS-GGGBTT
T ss_pred HHHHH--hCCCCCCEEEEcCCCCCCccHHHHHhccCcccCCC
Confidence 88999 99999999999999999999999999999999998
No 41
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=99.94 E-value=7.6e-27 Score=236.79 Aligned_cols=186 Identities=24% Similarity=0.309 Sum_probs=164.1
Q ss_pred HHHHHHHHhCCCCCCCeEE-EECCCCCcchHHHHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhc
Q psy4615 214 GVQELIRRYKVETFGKNAV-VCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYN 292 (477)
Q Consensus 214 Av~~Lle~~gi~l~Gk~vv-ViGrS~~VGkPLA~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~ 292 (477)
+..+++++.|+++.|-|++ =+| .+++-+-|+.+|..||..|..++++ ++-|.-.- -++.+.++..||+
T Consensus 175 ~~~~~fee~g~pi~GDD~ksq~G-aTi~h~~La~~f~~Rgvkv~~t~Q~--NigGN~Df--------lnl~~r~r~~SKk 243 (362)
T COG1260 175 AWVELFEEKGLPIAGDDIKSQTG-ATILHRVLAQLFADRGVKVDRTYQL--NIGGNTDF--------LNLLARERLESKK 243 (362)
T ss_pred HHHHHHHHcCCceeccchhhhcC-CceeHHHHHHHHHHcCceeeeEEEE--ecCCChHH--------HHhcchhhhhhhh
Confidence 7999999999999999984 378 8899999999999999988887774 33332221 1456677999999
Q ss_pred cCCCchhhHhhhcccccCCCCCCCCceeEEEeecCCCCccccccccceeeeeccceeEEeecccccchhhhhHHHHHHHH
Q psy4615 293 ISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIIL 372 (477)
Q Consensus 293 iSK~~v~~~~~~~~~~ly~~~~~~~h~v~I~Y~p~~Gd~K~a~d~~~~~~flG~~~~i~~~~~c~DSlLAaPLilDL~~l 372 (477)
+||++++++|++ |+-++.++|+-.++|+|++||+|.|+++|.+++|.|.+|.|.++|.|+||..+|||++||+|+
T Consensus 244 ~SKts~V~sil~-----~~~~~~~~~I~ps~yv~~L~D~K~a~~~ie~~~F~g~~~~l~~~l~v~DSpnsagliiD~vR~ 318 (362)
T COG1260 244 ISKTSAVTSILG-----YKLGDKPIHIGPSDYVEPLGDRKVAYMRIEGKLFGGVPMNLEIKLEVEDSPNSAGLIIDLVRL 318 (362)
T ss_pred hhHHHHHHHHhc-----ccccCCCeEECccccccccCCceEEEEEEEeeecCCCceEEEEEEEeeccchhhHHHHHHHHH
Confidence 999999999999 877778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCCccccccccchHHHHHhhhcCCCCCCCCchhchHHHHHHHHHHHHH
Q psy4615 373 AELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPGTPVVNALAQQRSCIENILR 430 (477)
Q Consensus 373 ~~~~~r~~~~~~~~~~~~~~~~vl~~Ls~~fK~P~~~~g~~~~~~l~~Q~~~l~~~~~ 430 (477)
+.+|.++|..| +|.+..|||||.|-.......+ |+.+|++|++
T Consensus 319 ~k~a~drGi~G----------~v~~~say~mK~P~~~~~~~~~-----a~~~leefi~ 361 (362)
T COG1260 319 AKLALDRGIGG----------PVYEVSAYFMKNPPTQYPDDIE-----ARRALEEFII 361 (362)
T ss_pred HHHHHhcCCCc----------eeeehhhhhccCCCcCCCccHH-----HHHHHHHHhc
Confidence 99999999987 5888889999999977554332 9999999986
No 42
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=99.93 E-value=1.2e-26 Score=215.49 Aligned_cols=95 Identities=54% Similarity=0.847 Sum_probs=83.8
Q ss_pred CccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC-------------------
Q psy4615 193 NIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA------------------- 253 (477)
Q Consensus 193 ~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a------------------- 253 (477)
||.|+|+|+.|++.|.||||+||++||++|+++++||+++|+|||.+||+||+.||.++++
T Consensus 1 hp~N~g~l~~~~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~A 80 (160)
T PF02882_consen 1 HPLNLGRLVSGQPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRA 80 (160)
T ss_dssp SHHHHHHHHTTTTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTS
T ss_pred CcHhHHHHhCCCCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeec
Confidence 7899999999999999999999999999999999999999999999999999999998888
Q ss_pred ---------------------------------------------CccccceEEccCCCCCChhHHHHHHHHHHHHHHH
Q psy4615 254 ---------------------------------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287 (477)
Q Consensus 254 ---------------------------------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~ 287 (477)
++.++++++|||||||||+|+++|++|+++++++
T Consensus 81 DIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~N~v~a~~~ 159 (160)
T PF02882_consen 81 DIVVSAVGKPNLIKADWIKPGAVVIDVGINYVPGDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMKNLVKAAKR 159 (160)
T ss_dssp SEEEE-SSSTT-B-GGGS-TTEEEEE--CEEETTTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEeeeeccccccccccccCCcEEEecCCccccccceeeecccHHHhhccceEEeeCCCCccHHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999999875
No 43
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=99.93 E-value=4.4e-26 Score=217.20 Aligned_cols=101 Identities=34% Similarity=0.644 Sum_probs=90.9
Q ss_pred CCCCCCCCCccchHHhhcCC---------CCcccCCHHHHHHHHHHhCC---------CCCCCeEEEECCCCCcchHHHH
Q psy4615 185 PHKDVDGFNIVNVGRFCLDL---------KTLIPCTPLGVQELIRRYKV---------ETFGKNAVVCGRSKNVGMPIAM 246 (477)
Q Consensus 185 p~KDVDGl~p~nlg~l~~g~---------~~f~PcTa~Av~~Lle~~gi---------~l~Gk~vvViGrS~~VGkPLA~ 246 (477)
|+||||||||.|+|+|+.|. +.|+||||+||++||++|++ +++||+++|||||++||+|||+
T Consensus 1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~ 80 (197)
T cd01079 1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA 80 (197)
T ss_pred CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence 78999999999999999875 58999999999999999987 8999999999999999999999
Q ss_pred HhhhCC---------------------------------C----------------------------------------
Q psy4615 247 LLHADG---------------------------------A---------------------------------------- 253 (477)
Q Consensus 247 lL~~~~---------------------------------a---------------------------------------- 253 (477)
||.+++ .
T Consensus 81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~d 160 (197)
T cd01079 81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKN 160 (197)
T ss_pred HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCcC
Confidence 995332 1
Q ss_pred ---CccccceEEccCCCCCChhHHHHHHHHHHHHHHHH
Q psy4615 254 ---GVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288 (477)
Q Consensus 254 ---~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~ 288 (477)
++.++|+|+||| |||+|+++|++|++.+++++
T Consensus 161 vd~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~ 195 (197)
T cd01079 161 FEPSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQ 195 (197)
T ss_pred ccHhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHh
Confidence 456789999998 99999999999999887654
No 44
>PF01658 Inos-1-P_synth: Myo-inositol-1-phosphate synthase; InterPro: IPR013021 This is a region of myo-inositol-1-phosphate synthases that is related to the glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain. 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; PDB: 3CIN_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=99.90 E-value=1.5e-25 Score=196.98 Aligned_cols=111 Identities=34% Similarity=0.420 Sum_probs=95.2
Q ss_pred CCCcchHHHHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCchhhHhhhcccccCCCCCCC
Q psy4615 237 SKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDMVASNSILYRPGEKP 316 (477)
Q Consensus 237 S~~VGkPLA~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~iSK~~v~~~~~~~~~~ly~~~~~~ 316 (477)
.+++-+-|+.||..||..+..|++ +++.|+-.- -++..++++.||++||++++++|++.+++||+ +++
T Consensus 2 ~T~~k~~L~~~l~~Rgl~v~~~~q--~NilGN~D~--------~nL~~~~r~~sK~~SKs~~v~~~l~~~~~ly~--~~~ 69 (112)
T PF01658_consen 2 QTILKSVLAPLLASRGLKVRSWYQ--YNILGNTDF--------LNLSDPERFKSKKISKSSVVDSILGSNPELYD--EDP 69 (112)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE--EEEESSHHH--------HHHTSHHHHHHHHHHHHHHHHHHHSC-TTTSB-----
T ss_pred CccHHHHHHHHHHHcCCceEEEEE--EeeccchHH--------HHhCCHhHHHhHHHHHHHHHHHHHhccccccC--CCC
Confidence 356778899999999999988888 787776553 35677889999999999999999999999992 369
Q ss_pred CceeEEEeecCCCCccccccccceeeeeccceeEEeecccccc
Q psy4615 317 DHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDS 359 (477)
Q Consensus 317 ~h~v~I~Y~p~~Gd~K~a~d~~~~~~flG~~~~i~~~~~c~DS 359 (477)
+|+++|+|+|++||+|+|||+|++++|||++|+|+++|+|+||
T Consensus 70 ~~~~~i~Yvp~lgD~K~a~~~ie~~~f~G~~~~i~~~~~~~DS 112 (112)
T PF01658_consen 70 DHIGPIDYVPFLGDRKVAWDRIEGEGFLGAPMTIEVNLSVEDS 112 (112)
T ss_dssp EEEEEEEE-GGGTTEEEEEEEEEEEEGGGEEEEEEEEEEEECH
T ss_pred cccccccccCcCCCceEEEEEEEEeeeCCCcEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999998
No 45
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=99.83 E-value=8.7e-21 Score=172.77 Aligned_cols=81 Identities=40% Similarity=0.587 Sum_probs=75.3
Q ss_pred CCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC-------------------------------
Q psy4615 205 KTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA------------------------------- 253 (477)
Q Consensus 205 ~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a------------------------------- 253 (477)
+.|+||||+|+++|+++||++++||+++|+|||..||+|++.||.++++
T Consensus 5 ~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~ 84 (140)
T cd05212 5 PLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK 84 (140)
T ss_pred CcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc
Confidence 5799999999999999999999999999999999999999999988877
Q ss_pred -----------------------CccccceEEccCCCCCChhHHHHHHHHHHHHH
Q psy4615 254 -----------------------GVSEVAGYITPVPGGVGPMTVAMLMKNTILAA 285 (477)
Q Consensus 254 -----------------------~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~ 285 (477)
++.++++++|||||||||+|+++|++|++.++
T Consensus 85 i~~~~ikpGa~Vidvg~~~~~~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~ 139 (140)
T cd05212 85 VPTEWIKPGATVINCSPTKLSGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV 139 (140)
T ss_pred cCHHHcCCCCEEEEcCCCcccchhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence 45667999999999999999999999998653
No 46
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=99.78 E-value=9.8e-20 Score=183.88 Aligned_cols=120 Identities=31% Similarity=0.431 Sum_probs=97.7
Q ss_pred CCCcHHHHHhhcCCCCCCCCCCccchHHhhc---CCC--CcccCCHH---HHHHHHHHhCCCCCCCeEEEECCCCCcchH
Q psy4615 172 EHMVERAVCNAVAPHKDVDGFNIVNVGRFCL---DLK--TLIPCTPL---GVQELIRRYKVETFGKNAVVCGRSKNVGMP 243 (477)
Q Consensus 172 ~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~---g~~--~f~PcTa~---Av~~Lle~~gi~l~Gk~vvViGrS~~VGkP 243 (477)
.|-+.+++.++|+.. |-+ ++|+.++++++ |++ +++|++.. |+.+++++.|+++.|+|.+ |
T Consensus 168 ~~~t~~~l~~al~~~-~~~-~~aS~~YA~AAl~~g~~fvN~tP~~~a~~P~l~ela~~~gvpi~GdD~K----T------ 235 (295)
T PF07994_consen 168 VHDTLEALEKALDEN-DPE-ISASMLYAYAALEAGVPFVNGTPSNIADDPALVELAEEKGVPIAGDDGK----T------ 235 (295)
T ss_dssp CCSSHHHHHHHHHTT--TT-HHHHHHHHHHHHHTTEEEEE-SSSTTTTSHHHHHHHHHHTEEEEESSBS-----------
T ss_pred ccCCHHHHHHHhhcC-CCc-CChHHHHHHHHHHCCCCeEeccCccccCCHHHHHHHHHcCCCeecchHh----h------
Confidence 466788899998643 333 88999988884 665 57776333 9999999999999999876 2
Q ss_pred HHHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCchhhHhhhcccccCCCCCCCCceeEEE
Q psy4615 244 IAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDMVASNSILYRPGEKPDHTVVIK 323 (477)
Q Consensus 244 LA~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~iSK~~v~~~~~~~~~~ly~~~~~~~h~v~I~ 323 (477)
T Consensus 236 -------------------------------------------------------------------------------- 235 (295)
T PF07994_consen 236 -------------------------------------------------------------------------------- 235 (295)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCccccccccceeeeeccceeEEeecccccchhhhhHHHHHHHHHHHhhhhcccCCCccccccccchHHHHHhhh
Q psy4615 324 YVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLC 403 (477)
Q Consensus 324 Y~p~~Gd~K~a~d~~~~~~flG~~~~i~~~~~c~DSlLAaPLilDL~~l~~~~~r~~~~~~~~~~~~~~~~vl~~Ls~~f 403 (477)
+|||||||||+||+++|+|+|++| |+++|||||
T Consensus 236 ------------------------------------~lAAplvlDLirl~~la~r~g~~G-----------v~~~ls~ff 268 (295)
T PF07994_consen 236 ------------------------------------PLAAPLVLDLIRLAKLALRRGMGG-----------VQEWLSFFF 268 (295)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHHHHHHTTS-E-----------EHHHHHHHB
T ss_pred ------------------------------------hhhhHHHHHHHHHHHHHHHcCCCC-----------hhHHHHHHh
Confidence 999999999999999999999999 999999999
Q ss_pred cCCCCCCCCchhchHHHHHHHHHHHHH
Q psy4615 404 KAPLVPPGTPVVNALAQQRSCIENILR 430 (477)
Q Consensus 404 K~P~~~~g~~~~~~l~~Q~~~l~~~~~ 430 (477)
|+|++++|.+++|+|++|+++|+||+|
T Consensus 269 K~P~~~~g~~~~~~l~~q~~~L~~~~R 295 (295)
T PF07994_consen 269 KSPMVPPGPPQEHDLFEQYEMLENFLR 295 (295)
T ss_dssp SS-T--TTSTT--HHHHHHHHHHHHHH
T ss_pred cCCCccCCCCCCCcHHHHHHHHHHHhC
Confidence 999999999999999999999999998
No 47
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=99.75 E-value=1.8e-18 Score=161.93 Aligned_cols=101 Identities=58% Similarity=0.923 Sum_probs=93.3
Q ss_pred CCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC-----------
Q psy4615 185 PHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA----------- 253 (477)
Q Consensus 185 p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a----------- 253 (477)
|+|||||++..|.|+++.++..|.|||+.|++++++++..++.||+++|+|++.++|.+++.+|..+++
T Consensus 1 ~~kdvdg~~~~~~~~~~~~~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~ 80 (168)
T cd01080 1 PEKDVDGLHPVNLGRLALGRPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN 80 (168)
T ss_pred CCccccCCCccchhhHhcCCCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh
Confidence 689999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred -------------------------------------------------------CccccceEEccCCCCCChhHHHHHH
Q psy4615 254 -------------------------------------------------------GVSEVAGYITPVPGGVGPMTVAMLM 278 (477)
Q Consensus 254 -------------------------------------------------------~v~~~a~~iTPVpGGVGp~T~a~L~ 278 (477)
.+++++.++||+|||+||+|+++|+
T Consensus 81 l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdvd~~~~~~~G~~d~~~~~~~~~~~~~~pggvgp~t~a~l~ 160 (168)
T cd01080 81 LKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPDKSGGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLM 160 (168)
T ss_pred HHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCcccccCCCeeCCcCHHHHHhhccCcCCCCCcChHHHHHHHH
Confidence 1344678899999999999999999
Q ss_pred HHHHHHH
Q psy4615 279 KNTILAA 285 (477)
Q Consensus 279 ~N~l~a~ 285 (477)
+|++.++
T Consensus 161 ~n~~~~~ 167 (168)
T cd01080 161 KNTVEAA 167 (168)
T ss_pred HHHHHHh
Confidence 9998764
No 48
>KOG4230|consensus
Probab=99.65 E-value=7.5e-17 Score=171.83 Aligned_cols=304 Identities=26% Similarity=0.340 Sum_probs=163.8
Q ss_pred CCCCCeEEEEecCCCC-----------------CCcccccceeccCCCCccHhHHHHHHHHHHHHHHHHHHhcccCchhh
Q psy4615 1 MVKPGACVIDVGITRI-----------------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNVLQPNAI 63 (477)
Q Consensus 1 ~vk~gavVIDvGin~~-----------------~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa~~~~~~~~~~~~~~ 63 (477)
|+|||++|||||||+. +++++++++||||||||||||+||||+|++++|+|+..++. .+|-+
T Consensus 223 WiKpGavVIDvGINyvpD~~Kksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNtveaAKR~r~es~-~~~~i 301 (935)
T KOG4230|consen 223 WIKPGAVVIDVGINYVPDPSKKSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNTVEAAKRQREESK-KKRKI 301 (935)
T ss_pred cccCCcEEEEccccccCCCCCcccceEeeecchHhhhhhhhccccCCCCcchHHHHHHHHHHHHHHHHHHHhcc-ccCcC
Confidence 9999999999999985 34788999999999999999999999999999999988777 44433
Q ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCc
Q psy4615 64 LHKKANKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTL 143 (477)
Q Consensus 64 l~~~~~ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~ 143 (477)
--...+. . +++-..| + ++ ...+|| .+.+.|+++||-.. ..++-.+.
T Consensus 302 ~~~pl~l---~--tpvpsdi--d----is-----rsq~pk-----------------~i~~la~e~gi~s~-ele~yg~~ 347 (935)
T KOG4230|consen 302 DLLPLKL---K--TPVPSDI--D----IS-----RSQEPK-----------------LIGQLAKELGIYSH-ELELYGHY 347 (935)
T ss_pred CCCcccc---C--CCCCccc--c----hh-----hccCcc-----------------hHHHHHHHhchhhH-HHHhhcch
Confidence 2111111 0 0000011 0 00 012343 34678889999877 66665554
Q ss_pred ccHH---hhhccccCCCCCC-----ccEEEEcCCCCCCCc--HHHHHhhcCCCC--CCCCCCccchHHhh------cC--
Q psy4615 144 FGRS---KLINPMSIPISTG-----VSSHISQLPLPEHMV--ERAVCNAVAPHK--DVDGFNIVNVGRFC------LD-- 203 (477)
Q Consensus 144 ~t~e---~~I~~L~~N~D~~-----V~GILVqlPLP~~ld--~~~l~~aI~p~K--DVDGl~p~nlg~l~------~g-- 203 (477)
... +.++.| ...++ |.||- -.||.+.-. ..-|.+++..-. -+-++..-|+|--+ +|
T Consensus 348 -kakv~l~v~erl--~hr~dg~yvvvsgit-ptp~gegkst~t~glvqal~~l~k~~iacvrqpsqgptfgvkggaaggg 423 (935)
T KOG4230|consen 348 -KAKVNLAVLERL--KHRKDGKYVVVSGIT-PTPLGEGKSTTTAGLVQALGALGKLAIACVRQPSQGPTFGVKGGAAGGG 423 (935)
T ss_pred -hhhcCHHHHHHH--hccCCCcEEEEeccC-CCCCCCCcchhHHHHHHHHHhhCCcceeeecCCCcCCccccccccCCCc
Confidence 222 677777 55544 44443 246655433 234555553210 11122222333222 01
Q ss_pred CCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHH-HHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHH
Q psy4615 204 LKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPI-AMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTI 282 (477)
Q Consensus 204 ~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPL-A~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l 282 (477)
...|+| ++++++.+.|--=.|+-.-+++-..+ ..|||..+-+=...-.-++|+-+|+--+|..|.
T Consensus 424 ysq~ip---------mdefnlhltgdihaitaannllaaaidtrmfhe~tq~daal~krlvp~kng~r~f~~~m~----- 489 (935)
T KOG4230|consen 424 YSQVIP---------MDEFNLHLTGDIHAITAANNLLAAAIDTRMFHENTQSDAALYKRLVPVKNGKRKFTPSMI----- 489 (935)
T ss_pred cceeee---------hhhcccccccchhhhhhhhHHHHHHHHHHHHhhcccchHHHHHhhccccCCeeecCHHHH-----
Confidence 123444 45677766664333333334433322 356654432100111236888888887776554
Q ss_pred HHHHHHhhhccCCCchhhHh--------hhcccccCCCCCCCCceeEEEeecCCCCccccccccceeeeeccceeEEee-
Q psy4615 283 LAAKHAVIYNISKSNVVDDM--------VASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMH- 353 (477)
Q Consensus 283 ~a~~~~~sk~iSK~~v~~~~--------~~~~~~ly~~~~~~~h~v~I~Y~p~~Gd~K~a~d~~~~~~flG~~~~i~~~- 353 (477)
++..+.-|+|.. .+++ ..+| - .|| .+.|+-+-++-| .+--.+.+|..-|=+=|
T Consensus 490 ---rrlkrl~i~k~d-p~~lt~ee~~~farln---i----dpd-tit~~rvldvnd------rflr~itig~a~tekg~t 551 (935)
T KOG4230|consen 490 ---RRLKRLGIEKTD-PEDLTPEEIKKFARLN---I----DPD-TITINRVLDVND------RFLRQITIGQAPTEKGHT 551 (935)
T ss_pred ---HHHHHhccccCC-cccCCHHHHHHhHccc---C----CCC-eeEEEEEeccch------hhhhheecccCccccCcc
Confidence 234444555532 1111 1111 1 244 344555444433 22233445555444433
Q ss_pred -cccccchhhhhHHHHHHHHHHH
Q psy4615 354 -NTCEDSLLASPLILDLIILAEL 375 (477)
Q Consensus 354 -~~c~DSlLAaPLilDL~~l~~~ 375 (477)
.++-|-..|+-+|-=||+-++|
T Consensus 552 r~t~fdisvase~mailals~dl 574 (935)
T KOG4230|consen 552 RTTGFDISVASECMAILALSKDL 574 (935)
T ss_pred cccccceehHHHHHHHHHHhccH
Confidence 2566777888887777765544
No 49
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.53 E-value=3.9e-15 Score=150.64 Aligned_cols=55 Identities=56% Similarity=0.771 Sum_probs=48.6
Q ss_pred CCCCCeEEEEecCCCC----------------CCcccccceeccCCCCccHhHHHHHHHHHHHHHHHHHHh
Q psy4615 1 MVKPGACVIDVGITRI----------------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIY 55 (477)
Q Consensus 1 ~vk~gavVIDvGin~~----------------~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa~~~~~~ 55 (477)
|||||++|||||||+. +++.++|+|||||||||||||+||||+|++++++++...
T Consensus 222 ~ik~gaiVIDvGin~~~~~~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~ 292 (297)
T PRK14167 222 MLSEGATVIDVGINRVDADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV 292 (297)
T ss_pred HcCCCCEEEEccccccCcccccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 7999999999999983 236788999999999999999999999999999875543
No 50
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.51 E-value=7e-15 Score=148.82 Aligned_cols=53 Identities=62% Similarity=0.954 Sum_probs=47.6
Q ss_pred CCCCCeEEEEecCCCC---------------CCcccccceeccCCCCccHhHHHHHHHHHHHHHHHHH
Q psy4615 1 MVKPGACVIDVGITRI---------------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 53 (477)
Q Consensus 1 ~vk~gavVIDvGin~~---------------~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa~~~~ 53 (477)
|||||++|||||||+. +++.++|++||||||||||||+||||+|++++++++.
T Consensus 219 ~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~~~ 286 (297)
T PRK14186 219 MVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRH 286 (297)
T ss_pred HcCCCCEEEEeccccccccccCCceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999973 2367889999999999999999999999999997753
No 51
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.51 E-value=6.7e-15 Score=148.72 Aligned_cols=52 Identities=60% Similarity=0.864 Sum_probs=47.1
Q ss_pred CCCCCeEEEEecCCCC--------------CCcccccceeccCCCCccHhHHHHHHHHHHHHHHHH
Q psy4615 1 MVKPGACVIDVGITRI--------------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 52 (477)
Q Consensus 1 ~vk~gavVIDvGin~~--------------~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa~~~ 52 (477)
|||||++|||||||+. +.+.++++|||||||||||||+||||+|++++++++
T Consensus 221 ~ik~gaiVIDVGin~~~~~~~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 286 (294)
T PRK14187 221 WIKKGAIVIDVGINSIEEGGVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQ 286 (294)
T ss_pred HcCCCCEEEEecccccCCCCccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 7999999999999973 126778999999999999999999999999999775
No 52
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.50 E-value=1.2e-14 Score=147.48 Aligned_cols=59 Identities=58% Similarity=0.822 Sum_probs=51.6
Q ss_pred CCCCCeEEEEecCCCC--------------CCcccccceeccCCCCccHhHHHHHHHHHHHHHHHHHHhcccC
Q psy4615 1 MVKPGACVIDVGITRI--------------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNVLQ 59 (477)
Q Consensus 1 ~vk~gavVIDvGin~~--------------~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa~~~~~~~~~~ 59 (477)
|+|||++|||||||+. +.+.++++|||||||||||||+||||+|+++++++|.+.+.-|
T Consensus 220 ~ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~~~~~~ 292 (301)
T PRK14194 220 WLKPGAVVIDVGINRIDDDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHAQRSQ 292 (301)
T ss_pred hccCCcEEEEecccccCCCCCcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6899999999999973 2356789999999999999999999999999999987766543
No 53
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=99.46 E-value=2.8e-14 Score=130.15 Aligned_cols=49 Identities=43% Similarity=0.670 Sum_probs=45.8
Q ss_pred CCCCCeEEEEecCCCC--CCcccccceeccCCCCccHhHHHHHHHHHHHHH
Q psy4615 1 MVKPGACVIDVGITRI--KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAA 49 (477)
Q Consensus 1 ~vk~gavVIDvGin~~--~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa 49 (477)
|+|||++|||+|+|+. +.+.++++++|||||||||||+||||+|+++++
T Consensus 89 ~ikpGa~Vidvg~~~~~~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~ 139 (140)
T cd05212 89 WIKPGATVINCSPTKLSGDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV 139 (140)
T ss_pred HcCCCCEEEEcCCCcccchhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence 7999999999999983 678889999999999999999999999999875
No 54
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.43 E-value=7.1e-14 Score=141.62 Aligned_cols=52 Identities=67% Similarity=0.991 Sum_probs=46.7
Q ss_pred CCCCCeEEEEecCCCC------------------CCcccccceeccCCCCccHhHHHHHHHHHHHHHHHH
Q psy4615 1 MVKPGACVIDVGITRI------------------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 52 (477)
Q Consensus 1 ~vk~gavVIDvGin~~------------------~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa~~~ 52 (477)
|++||++|||||+|+. +++.++|+|||||||||||||+||||+|+++++++.
T Consensus 219 ~lk~GavVIDvGin~~~~~~~~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 288 (296)
T PRK14188 219 WIKPGATVIDVGINRIPAPEKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRA 288 (296)
T ss_pred eecCCCEEEEcCCcccCCccccCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 6899999999999973 136778999999999999999999999999999775
No 55
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.31 E-value=0.25 Score=50.38 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=34.2
Q ss_pred CHH-HHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 211 TPL-GVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 211 Ta~-Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
|+. |+.+.++++++++.|+++.|+|.+. +|++++.+|...++
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~-iG~~~a~~L~~~Ga 176 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGR-TGMTLARTLKALGA 176 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcH-HHHHHHHHHHHCCC
Confidence 444 5777788889999999999999765 89999999965554
No 56
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.72 E-value=0.25 Score=50.44 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=37.3
Q ss_pred CCCCeEEEEecCCCCC----Ccccc---cceeccCCCCccHhHHHHHHHHHHHHH
Q psy4615 2 VKPGACVIDVGITRIK----CVSEV---AGYITPVPGGVGPMTVAMLMKNTILAA 49 (477)
Q Consensus 2 vk~gavVIDvGin~~~----~~~~~---~~~iTPVPGGVGp~T~a~L~~N~v~aa 49 (477)
+++|++|||++.+.-. .+... +.+.++.||+|+|+|++.++.|.+...
T Consensus 231 ~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~~~~~~~i~~~ 285 (296)
T PRK08306 231 MPPEALIIDLASKPGGTDFEYAEKRGIKALLAPGLPGKVAPKTAGQILANVLSQL 285 (296)
T ss_pred CCCCcEEEEEccCCCCcCeeehhhCCeEEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence 6899999999998632 12222 334599999999999999999998654
No 57
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.26 E-value=0.41 Score=39.66 Aligned_cols=42 Identities=36% Similarity=0.449 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhC----CCCCCCeEEEECCCCCcchHHHHHhhhCC
Q psy4615 210 CTPLGVQELIRRYK----VETFGKNAVVCGRSKNVGMPIAMLLHADG 252 (477)
Q Consensus 210 cTa~Av~~Lle~~g----i~l~Gk~vvViGrS~~VGkPLA~lL~~~~ 252 (477)
||+.++.+.+++.. .++.+|+++|+|. ..+|++++.+|...+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~-G~~g~~~a~~l~~~~ 46 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGA-GEVGKGIAKLLADEG 46 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECC-CHHHHHHHHHHHHcC
Confidence 78888888887764 5599999999996 888999999998874
No 58
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.84 E-value=1.3 Score=45.07 Aligned_cols=43 Identities=30% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCHH-HHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 210 CTPL-GVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 210 cTa~-Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
+|+. ++...++.+++++.||++.|+|-+. +|+.++..|...++
T Consensus 132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~-iG~avA~~L~~~G~ 175 (287)
T TIGR02853 132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGR-TGMTIARTFSALGA 175 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEcChH-HHHHHHHHHHHCCC
Confidence 5555 6667777888999999999999554 89999999976665
No 59
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=87.64 E-value=0.28 Score=50.24 Aligned_cols=18 Identities=72% Similarity=1.101 Sum_probs=16.4
Q ss_pred CCCCCeEEEEecCCCCCC
Q psy4615 1 MVKPGACVIDVGITRIKC 18 (477)
Q Consensus 1 ~vk~gavVIDvGin~~~~ 18 (477)
|||||++|||||||+.++
T Consensus 217 ~vk~gavVIDVGinrv~~ 234 (283)
T COG0190 217 MVKPGAVVIDVGINRVND 234 (283)
T ss_pred cccCCCEEEecCCccccC
Confidence 899999999999998754
No 60
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=86.83 E-value=0.28 Score=51.84 Aligned_cols=16 Identities=63% Similarity=1.055 Sum_probs=15.1
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 292 ~vK~GAvVIDVGIn~~ 307 (364)
T PLN02616 292 WIKPGAVVIDVGINPV 307 (364)
T ss_pred HcCCCCEEEecccccc
Confidence 7999999999999985
No 61
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=86.35 E-value=0.31 Score=51.24 Aligned_cols=17 Identities=59% Similarity=0.941 Sum_probs=15.4
Q ss_pred CCCCCeEEEEecCCCCC
Q psy4615 1 MVKPGACVIDVGITRIK 17 (477)
Q Consensus 1 ~vk~gavVIDvGin~~~ 17 (477)
|||||++|||||||+.+
T Consensus 275 ~vk~GavVIDVGin~~~ 291 (345)
T PLN02897 275 WLKPGAVVIDVGTTPVE 291 (345)
T ss_pred HcCCCCEEEEccccccc
Confidence 79999999999999853
No 62
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.10 E-value=0.33 Score=49.90 Aligned_cols=16 Identities=56% Similarity=0.891 Sum_probs=15.0
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 220 ~vk~GavVIDvGin~~ 235 (288)
T PRK14171 220 YFNPESIVIDVGINRI 235 (288)
T ss_pred HcCCCCEEEEeecccc
Confidence 7999999999999985
No 63
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=85.22 E-value=0.38 Score=45.35 Aligned_cols=16 Identities=63% Similarity=1.036 Sum_probs=12.2
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||+|+.
T Consensus 97 ~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 97 WIKPGAVVIDVGINYV 112 (160)
T ss_dssp GS-TTEEEEE--CEEE
T ss_pred cccCCcEEEecCCccc
Confidence 8999999999999986
No 64
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.11 E-value=0.41 Score=49.35 Aligned_cols=17 Identities=71% Similarity=0.991 Sum_probs=15.4
Q ss_pred CCCCCeEEEEecCCCCC
Q psy4615 1 MVKPGACVIDVGITRIK 17 (477)
Q Consensus 1 ~vk~gavVIDvGin~~~ 17 (477)
|||||++|||||||+.+
T Consensus 222 ~vk~gavVIDvGin~~~ 238 (293)
T PRK14185 222 MVKEGAVVIDVGTTRVP 238 (293)
T ss_pred HcCCCCEEEEecCcccc
Confidence 79999999999999853
No 65
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.02 E-value=0.41 Score=49.06 Aligned_cols=16 Identities=63% Similarity=1.024 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 218 ~vk~GavVIDvGin~~ 233 (282)
T PRK14166 218 MVKEGVIVVDVGINRL 233 (282)
T ss_pred HcCCCCEEEEeccccc
Confidence 7999999999999984
No 66
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.99 E-value=1.3 Score=42.58 Aligned_cols=46 Identities=30% Similarity=0.306 Sum_probs=37.3
Q ss_pred cCCHHHHHHH----HHHh--CCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 209 PCTPLGVQEL----IRRY--KVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 209 PcTa~Av~~L----le~~--gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
|.|+.++... +++. +.+++||++.|+|-+ -||+.++..|...++.|
T Consensus 3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~V 54 (200)
T cd01075 3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKL 54 (200)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEE
Confidence 6788876444 4443 889999999999976 68999999999998844
No 67
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.84 E-value=0.41 Score=48.94 Aligned_cols=17 Identities=53% Similarity=0.794 Sum_probs=15.4
Q ss_pred CCCCCeEEEEecCCCCC
Q psy4615 1 MVKPGACVIDVGITRIK 17 (477)
Q Consensus 1 ~vk~gavVIDvGin~~~ 17 (477)
|||||++|||||||+.+
T Consensus 219 ~ik~gavVIDvGin~~~ 235 (278)
T PRK14172 219 YVKEGAIVIDVGTSSVN 235 (278)
T ss_pred HcCCCcEEEEeeccccC
Confidence 79999999999999854
No 68
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.83 E-value=0.43 Score=48.93 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=14.3
Q ss_pred CCCCCeEEEEecCCC
Q psy4615 1 MVKPGACVIDVGITR 15 (477)
Q Consensus 1 ~vk~gavVIDvGin~ 15 (477)
|||||++|||||||+
T Consensus 220 ~ik~gavVIDvGin~ 234 (284)
T PRK14177 220 WISEGAVLLDAGYNP 234 (284)
T ss_pred HcCCCCEEEEecCcc
Confidence 799999999999997
No 69
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.81 E-value=0.41 Score=49.16 Aligned_cols=16 Identities=38% Similarity=0.779 Sum_probs=15.0
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 218 ~ik~GavVIDvGin~~ 233 (287)
T PRK14181 218 MIAEKAVIVDVGTSRV 233 (287)
T ss_pred HcCCCCEEEEeccccc
Confidence 7999999999999984
No 70
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=84.71 E-value=2.9 Score=41.41 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=39.1
Q ss_pred CEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 102 PTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 102 P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
..+++|.-. +++--..+.+...+.|++.|..+. ......+. .++ +.++.+ . ..+|||||+.
T Consensus 57 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~-~~~vdGiI~~ 119 (327)
T PRK10423 57 RTIGMLITASTNPFYSELVRGVERSCFERGYSLV-LCNTEGDE-QRMNRNLETL--M-QKRVDGLLLL 119 (327)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHHHHHHcCCEEE-EEeCCCCH-HHHHHHHHHH--H-HcCCCEEEEe
Confidence 356666532 345556667888999999998877 55443333 222 566655 2 3469999995
No 71
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.56 E-value=0.44 Score=49.15 Aligned_cols=16 Identities=63% Similarity=1.142 Sum_probs=15.0
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 226 ~ik~gavVIDvGin~~ 241 (297)
T PRK14168 226 WIKPGATVIDVGVNRV 241 (297)
T ss_pred HcCCCCEEEecCCCcc
Confidence 7999999999999984
No 72
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.49 E-value=0.44 Score=48.95 Aligned_cols=16 Identities=69% Similarity=1.259 Sum_probs=15.0
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 216 ~vk~GavVIDVGin~~ 231 (287)
T PRK14173 216 MVRPGAVVVDVGINRV 231 (287)
T ss_pred HcCCCCEEEEccCccc
Confidence 7999999999999985
No 73
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.93 E-value=0.48 Score=48.62 Aligned_cols=16 Identities=69% Similarity=1.194 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 221 ~ik~GavVIDvGin~~ 236 (284)
T PRK14193 221 MVKPGAAVLDVGVSRA 236 (284)
T ss_pred HcCCCCEEEEcccccc
Confidence 7999999999999984
No 74
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.69 E-value=0.51 Score=48.42 Aligned_cols=16 Identities=63% Similarity=0.980 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||+|+.
T Consensus 218 ~vk~GavVIDvGin~~ 233 (284)
T PRK14170 218 YIKPGAIVIDVGMDRD 233 (284)
T ss_pred HcCCCCEEEEccCccc
Confidence 7999999999999984
No 75
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.64 E-value=0.5 Score=48.46 Aligned_cols=16 Identities=75% Similarity=1.047 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 217 ~vk~GavVIDvGin~~ 232 (282)
T PRK14169 217 AVKPGAVVIDVGISRG 232 (282)
T ss_pred HcCCCcEEEEeecccc
Confidence 7999999999999984
No 76
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.44 E-value=0.53 Score=48.27 Aligned_cols=17 Identities=65% Similarity=0.984 Sum_probs=15.3
Q ss_pred CCCCCeEEEEecCCCCC
Q psy4615 1 MVKPGACVIDVGITRIK 17 (477)
Q Consensus 1 ~vk~gavVIDvGin~~~ 17 (477)
|||||++|||||||+.+
T Consensus 219 ~vk~gavVIDvGin~~~ 235 (282)
T PRK14180 219 MVKEGAVVIDVGINHVD 235 (282)
T ss_pred HcCCCcEEEEecccccC
Confidence 79999999999999853
No 77
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=82.76 E-value=0.57 Score=48.38 Aligned_cols=16 Identities=56% Similarity=0.976 Sum_probs=15.0
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 228 ~vk~gavVIDvGin~~ 243 (299)
T PLN02516 228 WIKPGAAVIDVGTNAV 243 (299)
T ss_pred HcCCCCEEEEeecccc
Confidence 7999999999999985
No 78
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.65 E-value=0.54 Score=48.19 Aligned_cols=16 Identities=63% Similarity=0.972 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 218 ~ik~gaiVIDvGin~~ 233 (282)
T PRK14182 218 WVKEGAVVIDVGMNRL 233 (282)
T ss_pred HcCCCCEEEEeeceec
Confidence 7999999999999984
No 79
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=81.71 E-value=4.7 Score=40.15 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHH---------HcCCCCCEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-
Q psy4615 79 IANTILEELKDEVKAWV---------ALGHRVPTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS- 147 (477)
Q Consensus 79 lA~~I~~~lk~~v~~lk---------~~~g~~P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e- 147 (477)
|+++-|+.+.+.++++- -+.++...++++.-. +++-.....+...+.|++.|..+. ......+. ..+
T Consensus 29 vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy~~~-i~~~~~~~-~~~~ 106 (327)
T TIGR02417 29 ISQETVERVMAVVREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGYQLL-IACSDDNP-DQEK 106 (327)
T ss_pred cCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEE-EEeCCCCH-HHHH
Confidence 55666666655555430 011233456665532 244445567888999999999988 66544433 222
Q ss_pred hhhccccCCCCCCccEEEEc
Q psy4615 148 KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 148 ~~I~~L~~N~D~~V~GILVq 167 (477)
+.++.+ . ...|+|||+.
T Consensus 107 ~~~~~l--~-~~~vdgiIi~ 123 (327)
T TIGR02417 107 VVIENL--L-ARQVDALIVA 123 (327)
T ss_pred HHHHHH--H-HcCCCEEEEe
Confidence 566655 2 3469999985
No 80
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.44 E-value=0.71 Score=47.32 Aligned_cols=16 Identities=69% Similarity=1.014 Sum_probs=15.0
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 218 ~vk~gavvIDvGin~~ 233 (281)
T PRK14183 218 MVKEGAIVIDIGINRT 233 (281)
T ss_pred HcCCCcEEEEeecccc
Confidence 8999999999999984
No 81
>PRK09526 lacI lac repressor; Reviewed
Probab=81.40 E-value=5.7 Score=39.71 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=40.8
Q ss_pred CCEEEEEEeCC-ChhhHHHHHHHHHHHHHcCCeeeeeEEecCC-cccHHhhhccccCCCCCCccEEEEcCCCC
Q psy4615 101 VPTLTAILVGN-DSASSTYVNNKMKSAAKVGEVNALGVLYHLT-LFGRSKLINPMSIPISTGVSSHISQLPLP 171 (477)
Q Consensus 101 ~P~LaiI~vGd-d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~-~~t~e~~I~~L~~N~D~~V~GILVqlPLP 171 (477)
...+++|.-.- ++--....+...+.|++.|..+. ......+ .+.+.+.++.+ .+.+|||||+..|..
T Consensus 63 ~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~-i~~~~~~~~~~~~~~l~~l---~~~~vdGiii~~~~~ 131 (342)
T PRK09526 63 SLTIGLATTSLALHAPSQIAAAIKSRADQLGYSVV-ISMVERSGVEACQAAVNEL---LAQRVSGVIINVPLE 131 (342)
T ss_pred CceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEEE-EEeCCCChHHHHHHHHHHH---HhcCCCEEEEecCCC
Confidence 33566665321 23334567888899999999988 6554432 20122666666 345799999975543
No 82
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=81.24 E-value=5.8 Score=39.44 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=51.7
Q ss_pred ccccHH----HHHHHHHHHHHHHHHHH---------HcCCCCCEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEE
Q psy4615 73 IIDGKF----IANTILEELKDEVKAWV---------ALGHRVPTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVL 138 (477)
Q Consensus 73 ILdGk~----lA~~I~~~lk~~v~~lk---------~~~g~~P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~ 138 (477)
+|+|++ |+++-|+.+.+.++++- -+.+....+++|.-. +++--....+...+.|++.|..+. ...
T Consensus 20 vLn~~~~~~~Vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~-~~~ 98 (328)
T PRK11303 20 VINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGYQLL-IAC 98 (328)
T ss_pred HHcCCCCCCCcCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEE-EEe
Confidence 455553 66666666666655541 011234456666532 233334455678889999999888 554
Q ss_pred ecCCcccHHhhhccccCCCCCCccEEEEc
Q psy4615 139 YHLTLFGRSKLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 139 lp~~~~t~e~~I~~L~~N~D~~V~GILVq 167 (477)
...+.+.+.+.++.+ - ..+++|||+.
T Consensus 99 ~~~~~~~~~~~~~~l--~-~~~vdgiIi~ 124 (328)
T PRK11303 99 SDDQPDNEMRCAEHL--L-QRQVDALIVS 124 (328)
T ss_pred CCCCHHHHHHHHHHH--H-HcCCCEEEEc
Confidence 333331122566655 2 3469999995
No 83
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=79.48 E-value=6.5 Score=39.82 Aligned_cols=67 Identities=27% Similarity=0.329 Sum_probs=50.6
Q ss_pred CCcccCCHHHH----HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC---CccccceEEccCCCCCChhH
Q psy4615 205 KTLIPCTPLGV----QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYITPVPGGVGPMT 273 (477)
Q Consensus 205 ~~f~PcTa~Av----~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a---~v~~~a~~iTPVpGGVGp~T 273 (477)
....+.|+.++ .+.+++.+.+++|++++|.| ...||.-++.+|...++ .|.+..+.+.. |.|+.+-.
T Consensus 11 ~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqG-fGnVG~~~a~~L~e~GakvvaVsD~~G~i~~-~~Gld~~~ 84 (254)
T cd05313 11 LIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISG-SGNVAQYAAEKLLELGAKVVTLSDSKGYVYD-PDGFTGEK 84 (254)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCceEEC-CCCCCHHH
Confidence 34668899965 45566679999999999999 78889999999999998 34444455543 66777543
No 84
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.35 E-value=0.88 Score=46.69 Aligned_cols=16 Identities=69% Similarity=1.095 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||+|+.
T Consensus 219 ~ik~gavVIDvGi~~~ 234 (284)
T PRK14190 219 MVKEGAVVIDVGVNRL 234 (284)
T ss_pred HcCCCCEEEEeecccc
Confidence 7999999999999985
No 85
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=79.30 E-value=9.2 Score=38.49 Aligned_cols=61 Identities=10% Similarity=-0.009 Sum_probs=37.2
Q ss_pred CEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 102 PTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 102 P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
-.+++|.-. .++--....+...+.|++.|.... ......+. ..+ +.++.+ . ..+|+|||+.
T Consensus 60 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~i~~l--~-~~~vdgiIi~ 122 (343)
T PRK10727 60 ETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLL-IGNGYHNE-QKERQAIEQL--I-RHRCAALVVH 122 (343)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHHHHcCCEEE-EEeCCCCH-HHHHHHHHHH--H-hcCCCEEEEe
Confidence 355665532 233334456778889999998776 55444343 222 666665 3 3469999996
No 86
>PRK14031 glutamate dehydrogenase; Provisional
Probab=79.21 E-value=3.5 Score=44.88 Aligned_cols=64 Identities=30% Similarity=0.350 Sum_probs=47.5
Q ss_pred CcccCCHHHH----HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc---cccceEEccCCCCCCh
Q psy4615 206 TLIPCTPLGV----QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV---SEVAGYITPVPGGVGP 271 (477)
Q Consensus 206 ~f~PcTa~Av----~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v---~~~a~~iTPVpGGVGp 271 (477)
.-.+.|+.++ .+.+++.|.+++||+|+|.| .-.||.-+|..|+..|+.| .+..+.+. -|+|+.+
T Consensus 202 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQG-fGNVG~~aA~~L~e~GAkVVaVSD~~G~iy-~~~Gld~ 272 (444)
T PRK14031 202 IRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSG-SGNVAQYTAEKVLELGGKVVTMSDSDGYIY-DPDGIDR 272 (444)
T ss_pred CCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCeEE-CCCCCCH
Confidence 4567899965 45566779999999999999 7889999999999999833 33333333 2455554
No 87
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=77.63 E-value=9.5 Score=38.42 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=37.5
Q ss_pred CEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 102 PTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 102 P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
..+++|.-+ .++--...++...+.|++.|.... ......+. ..+ +.++.+ . +.+++|||+.
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy~~~-~~~~~~~~-~~~~~~i~~l--~-~~~vdGiIi~ 122 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVL-IGNSYHEA-EKERHAIEVL--I-RQRCNALIVH 122 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHCCCEEE-EEcCCCCh-HHHHHHHHHH--H-hcCCCEEEEe
Confidence 356666543 233334445777889999998876 55444333 222 566665 3 3469999996
No 88
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.52 E-value=1.2 Score=45.94 Aligned_cols=16 Identities=63% Similarity=0.931 Sum_probs=14.8
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||+|+.
T Consensus 225 ~vk~gavVIDvGin~~ 240 (287)
T PRK14176 225 MVKEGAVIFDVGITKE 240 (287)
T ss_pred HcCCCcEEEEeccccc
Confidence 7999999999999974
No 89
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.57 E-value=1.2 Score=45.79 Aligned_cols=16 Identities=75% Similarity=1.103 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|+|||++|||||+|+.
T Consensus 219 ~ik~gavVIDVGin~~ 234 (285)
T PRK14189 219 MVKPGATVIDVGMNRD 234 (285)
T ss_pred HcCCCCEEEEcccccc
Confidence 7999999999999984
No 90
>PRK14030 glutamate dehydrogenase; Provisional
Probab=75.19 E-value=9.4 Score=41.69 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=49.8
Q ss_pred CcccCCHHHH----HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC---CccccceEEccCCCCCCh
Q psy4615 206 TLIPCTPLGV----QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYITPVPGGVGP 271 (477)
Q Consensus 206 ~f~PcTa~Av----~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a---~v~~~a~~iTPVpGGVGp 271 (477)
.-.++|+.++ .+.+++.|.+++|++++|-| ...||.-+|..|+..|+ .|.+..+.+.. |.|+.+
T Consensus 202 gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQG-fGnVG~~aA~~L~e~GakvVavSD~~G~i~d-~~Gld~ 272 (445)
T PRK14030 202 IRPEATGFGALYFVHQMLETKGIDIKGKTVAISG-FGNVAWGAATKATELGAKVVTISGPDGYIYD-PDGISG 272 (445)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCCceEEC-CCCCCH
Confidence 3456799965 45667789999999999999 88899999999999999 44455566554 567775
No 91
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.15 E-value=1.4 Score=45.32 Aligned_cols=16 Identities=69% Similarity=1.142 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||+|++|||||||+.
T Consensus 220 ~vk~gavVIDvGin~~ 235 (285)
T PRK10792 220 WIKPGAIVIDVGINRL 235 (285)
T ss_pred HcCCCcEEEEcccccc
Confidence 7999999999999985
No 92
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.81 E-value=1.5 Score=45.10 Aligned_cols=16 Identities=63% Similarity=1.086 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||+|+.
T Consensus 218 ~vk~GavVIDvGi~~~ 233 (285)
T PRK14191 218 MVKKGAVVVDIGINRL 233 (285)
T ss_pred HcCCCcEEEEeecccc
Confidence 7999999999999985
No 93
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=74.76 E-value=13 Score=37.03 Aligned_cols=62 Identities=11% Similarity=-0.029 Sum_probs=38.1
Q ss_pred CCEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 101 VPTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 101 ~P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
.-.++++.-. .++--...++...+.|++.|.... ......+. ..+ +.++.+ . +..|+||++.
T Consensus 59 ~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g~~~~-i~~~~~~~-~~~~~~~~~l--~-~~~vdGiIi~ 122 (329)
T TIGR01481 59 TTTVGVIIPDISNIYYAELARGIEDIATMYKYNII-LSNSDEDP-EKEVQVLNTL--L-SKQVDGIIFM 122 (329)
T ss_pred CCEEEEEeCCCCchhHHHHHHHHHHHHHHcCCEEE-EEeCCCCH-HHHHHHHHHH--H-hCCCCEEEEe
Confidence 3356666532 233334446677889999999887 65544443 223 566666 3 3579999985
No 94
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.72 E-value=1.3 Score=45.49 Aligned_cols=17 Identities=71% Similarity=1.132 Sum_probs=15.3
Q ss_pred CCCCCeEEEEecCCCCC
Q psy4615 1 MVKPGACVIDVGITRIK 17 (477)
Q Consensus 1 ~vk~gavVIDvGin~~~ 17 (477)
|||||++|||||||+.+
T Consensus 222 ~vk~GavVIDVGi~~~~ 238 (286)
T PRK14184 222 MVKPGAVVVDVGINRTD 238 (286)
T ss_pred HcCCCCEEEEeeeeccC
Confidence 78999999999999853
No 95
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=74.51 E-value=15 Score=36.58 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=36.2
Q ss_pred CEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 102 PTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 102 P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
..+++|.-. .++--....+...+.|++.|.+.. ......+. ..+ +.++.+ . +.+|+|||+.
T Consensus 64 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~~--~-~~~vdgiI~~ 126 (331)
T PRK14987 64 RAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTM-LAHYGYKP-EMEQERLESM--L-SWNIDGLILT 126 (331)
T ss_pred CEEEEEeCCCcchhHHHHHHHHHHHHHHCCCEEE-EecCCCCH-HHHHHHHHHH--H-hcCCCEEEEc
Confidence 356665432 133334445678889999998877 54443333 222 556555 2 4579999995
No 96
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=74.33 E-value=10 Score=37.93 Aligned_cols=64 Identities=6% Similarity=-0.068 Sum_probs=37.1
Q ss_pred CCEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcC
Q psy4615 101 VPTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 101 ~P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVql 168 (477)
...++++.-+ +++-.....+...+.|++.|.... ......+.+.+.+.++.+ . +.+++|||+.-
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g~~~~-~~~~~~~~~~~~~~~~~l--~-~~~vdgiIi~~ 128 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVF-LLQGGKDGEQLAQRFSTL--L-NQGVDGVVIAG 128 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHHcCCEEE-EEeCCCCHHHHHHHHHHH--H-hCCCCEEEEeC
Confidence 3356666532 233344445677899999998766 443332320112566665 2 34699999963
No 97
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.93 E-value=1.5 Score=45.17 Aligned_cols=16 Identities=88% Similarity=1.306 Sum_probs=14.9
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||||+.
T Consensus 224 ~vk~GavVIDVgi~~~ 239 (295)
T PRK14174 224 MVKPGAVVIDVGINRI 239 (295)
T ss_pred HcCCCCEEEEeecccc
Confidence 7899999999999985
No 98
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=72.89 E-value=11 Score=37.62 Aligned_cols=62 Identities=6% Similarity=-0.031 Sum_probs=37.2
Q ss_pred CEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEc
Q psy4615 102 PTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 102 P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVq 167 (477)
..+++|.-. +++--....+...+.|++.|.++. .+.-..+.+.+.+.|+.+ -. .+++||++.
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~~~~~~~i~~l--~~-~~vdgiii~ 122 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKGYTLI-LCNAWNNLEKQRAYLSML--AQ-KRVDGLLVM 122 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEE-EEeCCCCHHHHHHHHHHH--HH-cCCCEEEEe
Confidence 356666533 233344455788889999998877 554333331122666666 32 358999985
No 99
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.48 E-value=1.8 Score=44.46 Aligned_cols=16 Identities=75% Similarity=1.211 Sum_probs=14.8
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||||++|||||+|+.
T Consensus 213 ~vk~GavVIDVgi~~~ 228 (279)
T PRK14178 213 MVKPGATVIDVGINQV 228 (279)
T ss_pred HcCCCcEEEEeecccc
Confidence 7899999999999984
No 100
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=72.22 E-value=11 Score=38.31 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=70.2
Q ss_pred HHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccch-----
Q psy4615 123 MKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNV----- 197 (477)
Q Consensus 123 ~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nl----- 197 (477)
..+++++|+++. ...+.-..+..++.++.+ . ..++.|.-|-+|.-.. .-.+++.++|.-. -+-..|.
T Consensus 29 n~~f~~~gl~~~-Y~~~~v~~~~l~~~~~~~--~-~~~~~G~nVT~P~K~~--v~~~ld~~~~~A~--~iGavNTi~~~~ 100 (289)
T PRK12548 29 NYSFQKAGLDYA-YLAFDIPVDKVPDAIKAI--K-TFNMRGANVTMPCKSE--AAKYMDELSPAAR--IIGAVNTIVNDD 100 (289)
T ss_pred HHHHHHcCCCEE-EEEEecCHHHHHHHHHHH--H-HCCCCEEEECccCHHH--HHHHhhcCCHHHH--HhCceeEEEeEC
Confidence 556889999888 666653320112566665 3 2378999999985321 1122222222100 0111111
Q ss_pred HHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 198 GRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 198 g~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
|++. |. =.-..|+++.|++++.++.||+++|+|.+ =.|+.++..|+..++.
T Consensus 101 g~l~-G~----NTD~~G~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~ 151 (289)
T PRK12548 101 GKLT-GH----ITDGLGFVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAK 151 (289)
T ss_pred CEEE-EE----ecCHHHHHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCC
Confidence 1111 10 12366899999988889999999999975 6688888888888763
No 101
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=72.22 E-value=62 Score=33.49 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH------hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCC
Q psy4615 113 SASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS------KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPH 186 (477)
Q Consensus 113 ~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e------~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~ 186 (477)
|+.+.. -+=..+|.++|.++. .+. +.++ +.. +.++-| + .-+|+|++=.| .|-....+.+..
T Consensus 48 pSTRTR-~SFE~A~~~LGg~~i-~l~-~~~s-s~~kgEsl~Dt~~vl--s--~y~D~iviR~~--~~~~~~~~a~~~--- 114 (302)
T PRK14805 48 PSLRTR-VSFDIGINKLGGHCL-YLD-QQNG-ALGKRESVADFAANL--S--CWADAIVARVF--SHSTIEQLAEHG--- 114 (302)
T ss_pred CCchHH-HHHHHHHHHcCCcEE-ECC-CCcC-cCCCCcCHHHHHHHH--H--HhCCEEEEeCC--ChhHHHHHHHhC---
Confidence 444433 345789999999877 543 2222 111 444444 2 23899998754 343333443332
Q ss_pred CCCCCCCccchHHhhcCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 187 KDVDGFNIVNVGRFCLDLKTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 187 KDVDGl~p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
..+-+|. |.....||=+.+ ++.+.++.| +++|++++++|..+.|-.-+..++..-|+++
T Consensus 115 ----~vPVINa-----~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v 174 (302)
T PRK14805 115 ----SVPVINA-----LCDLYHPCQALADFLTLAEQFG-DVSKVKLAYVGDGNNVTHSLMYGAAILGATM 174 (302)
T ss_pred ----CCCEEEC-----CCCCCChHHHHHHHHHHHHHhC-CcCCcEEEEEcCCCccHHHHHHHHHHcCCEE
Confidence 2455664 344689998886 666667777 6999999999987778888888887777754
No 102
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.40 E-value=2 Score=44.22 Aligned_cols=16 Identities=63% Similarity=0.889 Sum_probs=14.8
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|+|||++|||||||+.
T Consensus 219 ~ik~GavVIDvgin~~ 234 (284)
T PRK14179 219 FVKEGAVVIDVGMNRD 234 (284)
T ss_pred HccCCcEEEEecceec
Confidence 6899999999999984
No 103
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=70.98 E-value=13 Score=40.74 Aligned_cols=63 Identities=32% Similarity=0.397 Sum_probs=49.2
Q ss_pred cccCCHHHH----HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC---CccccceEEccCCCCCCh
Q psy4615 207 LIPCTPLGV----QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYITPVPGGVGP 271 (477)
Q Consensus 207 f~PcTa~Av----~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a---~v~~~a~~iTPVpGGVGp 271 (477)
-.++|+.++ .+.+++.+.+++||+|+|-| +..||.-+|..|+..|+ .|.+..+++.. |.|+.+
T Consensus 212 r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG-~GnVg~~aa~~L~e~GakVVavSD~~G~iy~-~~Gld~ 281 (454)
T PTZ00079 212 RPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSG-SGNVAQYAVEKLLQLGAKVLTMSDSDGYIHE-PNGFTK 281 (454)
T ss_pred CCcccHHHHHHHHHHHHHHcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCCCcEEC-CCCCCH
Confidence 346799865 56667779999999999999 88899999999999998 34555566544 567765
No 104
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=70.92 E-value=41 Score=34.08 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=73.4
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH--hhhccccCCCCCCccEEEEcCCCCCC-------CcH
Q psy4615 106 AILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS--KLINPMSIPISTGVSSHISQLPLPEH-------MVE 176 (477)
Q Consensus 106 iI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e--~~I~~L~~N~D~~V~GILVqlPLP~~-------ld~ 176 (477)
.-.+|+.-+....=..-..+.+++|++.. .+.++... .++ +.++.+ . .++.|.-|-+|+-.. +|+
T Consensus 8 ~~liG~Pi~hS~SP~ihn~~f~~~gl~~~-y~~~~~~~-~~~l~~~~~~~--~--~~~~G~nVT~P~K~~~~~~~d~~~~ 81 (282)
T TIGR01809 8 AFIIGKPIAHSRSPHLHNAGYEILGLPDK-TYEFETCS-AEELKEVLSGF--G--PQFGGASVTIPLKFAILRFADEHTD 81 (282)
T ss_pred EEEEcCCchhccCHHHHHHHHHHcCCCcE-EEeeecCC-HHHHHHHHHhc--C--CCCcEEEECCCCHHHHHHHhhcCCH
Confidence 44567542221112233457889999887 66665332 122 566655 3 378999999996421 111
Q ss_pred -HHHHhhcCCCC-CCCC-CCccchHHhhcCCCCcccCCHHHHHHHHHHhCC--CCCCCeEEEECCCCCcchHHHHHhhhC
Q psy4615 177 -RAVCNAVAPHK-DVDG-FNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKV--ETFGKNAVVCGRSKNVGMPIAMLLHAD 251 (477)
Q Consensus 177 -~~l~~aI~p~K-DVDG-l~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi--~l~Gk~vvViGrS~~VGkPLA~lL~~~ 251 (477)
.+.+.+++.-. +-|| +.-.| --..|+++-+++.+. ++.||+++|+|. .=.++..+.-|+..
T Consensus 82 ~A~~iGAVNTv~~~~~g~l~G~N-------------TD~~G~~~~l~~~~~~~~~~~k~vlvlGa-GGaarai~~aL~~~ 147 (282)
T TIGR01809 82 RASLIGSVNTLLRTQNGIWKGDN-------------TDWDGIAGALANIGKFEPLAGFRGLVIGA-GGTSRAAVYALASL 147 (282)
T ss_pred HHHHhCceeEEEEcCCCcEEEec-------------CCHHHHHHHHHhhCCccccCCceEEEEcC-cHHHHHHHHHHHHc
Confidence 11222222110 0111 22222 245688899988874 689999999995 44578888888777
Q ss_pred CC
Q psy4615 252 GA 253 (477)
Q Consensus 252 ~a 253 (477)
+.
T Consensus 148 G~ 149 (282)
T TIGR01809 148 GV 149 (282)
T ss_pred CC
Confidence 65
No 105
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=70.62 E-value=1.2e+02 Score=31.61 Aligned_cols=117 Identities=15% Similarity=0.085 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCCeeeeeEEecCCcccHH---hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccc
Q psy4615 120 NNKMKSAAKVGEVNALGVLYHLTLFGRS---KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVN 196 (477)
Q Consensus 120 ~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~n 196 (477)
-+=..++.++|.++. .+.-.......+ +.++-| +. .+|+|++=.| .+-....+.+. ...+-+|
T Consensus 59 ~SFe~A~~~LGg~~i-~l~~~~~~~~~~~~~dt~~vl--s~--~~D~iv~R~~--~~~~~~~~a~~-------~~vPVIN 124 (311)
T PRK14804 59 VSFEVAMTEMGGHGI-YLDWMASNFQLSDIDLEARYL--SR--NVSVIMARLK--KHEDLLVMKNG-------SQVPVIN 124 (311)
T ss_pred HHHHHHHHHcCCeEE-EeCCCccccccccHHHHHHHH--Hh--cCCEEEEeCC--ChHHHHHHHHH-------CCCCEEE
Confidence 355789999999987 554322210111 234444 33 6899998754 34333333322 1345566
Q ss_pred hHHhhcCCCCcccCCHHH-HHHHHHHhCC-CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 197 VGRFCLDLKTLIPCTPLG-VQELIRRYKV-ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 197 lg~l~~g~~~f~PcTa~A-v~~Lle~~gi-~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.| .....||=+.+ ++.+.|+.|- +++|+++.++|..+-|-.-+..++..-|.++
T Consensus 125 ag-----~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v 180 (311)
T PRK14804 125 GC-----DNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHL 180 (311)
T ss_pred CC-----CCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEE
Confidence 43 44689998886 6777788885 6899999999987777777777777667654
No 106
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=69.47 E-value=15 Score=37.60 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCC-------CCcH-HHHHhhcCCCCCCCCC
Q psy4615 121 NKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPE-------HMVE-RAVCNAVAPHKDVDGF 192 (477)
Q Consensus 121 ~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~-------~ld~-~~l~~aI~p~KDVDGl 192 (477)
.-..+.++.|++.. ...+.-..+..++.++.+ . +.++.|.-|-+|.-. ++|+ .+.+.+++.-..-||
T Consensus 25 ihn~~f~~~gl~~~-Y~~~~v~~~~l~~~~~~l--~-~~~~~G~nVTiP~K~~~~~~~D~l~~~A~~iGAVNTv~~~~g- 99 (288)
T PRK12749 25 MQNKALEKAGLPFT-YMAFEVDNDSFPGAIEGL--K-ALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDG- 99 (288)
T ss_pred HHHHHHHHcCCCeE-EEEEecCHHHHHHHHHHH--H-hcCCCEEEECcCCHHHHHHHhccCCHHHHHhCceeEEEccCC-
Confidence 34567788999887 555543320112556655 3 236899999999632 1111 112222222111111
Q ss_pred CccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 193 NIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 193 ~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
++ .|. =.-..|+++.|++.++++.||+++|+|.+.. ++.++..|..+++
T Consensus 100 ------~l-~G~----NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~ 148 (288)
T PRK12749 100 ------YL-RGY----NTDGTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGL 148 (288)
T ss_pred ------EE-EEE----ecCHHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCC
Confidence 11 111 1245689999999999999999999997665 7877787777665
No 107
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=67.81 E-value=20 Score=35.34 Aligned_cols=64 Identities=31% Similarity=0.405 Sum_probs=46.5
Q ss_pred CcccCCHHHHH----HHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC---ccccceEEccCCCCCCh
Q psy4615 206 TLIPCTPLGVQ----ELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG---VSEVAGYITPVPGGVGP 271 (477)
Q Consensus 206 ~f~PcTa~Av~----~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~---v~~~a~~iTPVpGGVGp 271 (477)
.-.|.|+.++. +.+++.+.++.|+++.|.| ...||+-++.+|..+++. |.+..+.+. -|.|+.+
T Consensus 5 ~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~-~~~Gld~ 75 (227)
T cd01076 5 GREEATGRGVAYATREALKKLGIGLAGARVAIQG-FGNVGSHAARFLHEAGAKVVAVSDSDGTIY-NPDGLDV 75 (227)
T ss_pred CCCccchHHHHHHHHHHHHhcCCCccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCeEE-CCCCCCH
Confidence 34578998654 4556667889999999999 788899999999999883 333333332 2567764
No 108
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=67.47 E-value=13 Score=37.06 Aligned_cols=119 Identities=10% Similarity=0.102 Sum_probs=69.4
Q ss_pred HHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCC-CCCCCCCcc-c-hHH
Q psy4615 123 MKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPH-KDVDGFNIV-N-VGR 199 (477)
Q Consensus 123 ~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~-KDVDGl~p~-n-lg~ 199 (477)
-.++++.|+++. ...++-..+..++.++.+ .. .++.|.-|-+|.-.. .-.+++.+++. +-+-..+.. + -|+
T Consensus 20 n~~~~~~g~~~~-y~~~~v~~~~l~~~~~~~--~~-~~~~G~nVT~P~K~~--~~~~~d~~~~~A~~~gavNti~~~~g~ 93 (270)
T TIGR00507 20 NAFFKQLGLEGP-YIAFLVPPDDLEDALSGF--FA-LGFKGANVTSPFKEE--AFQFLDEIDERAKLAGAVNTLKLEDGK 93 (270)
T ss_pred HHHHHHcCCCcE-EEEEecCHHHHHHHHHHH--Hh-cCCCEEEECcCCHHH--HHHHhhhCCHHHHHhCCceEEEeeCCE
Confidence 566789999888 666654330112566666 33 378999999985421 11122222211 000001100 0 011
Q ss_pred hhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 200 FCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 200 l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
+ .|. =....|+++.+++.+....+|+++|+|.+ -.|++++..|...+.
T Consensus 94 l-~g~----NTD~~G~~~~l~~~~~~~~~k~vliiGaG-g~g~aia~~L~~~g~ 141 (270)
T TIGR00507 94 L-VGY----NTDGIGLVSDLERLIPLRPNQRVLIIGAG-GAARAVALPLLKADC 141 (270)
T ss_pred E-EEE----cCCHHHHHHHHHhcCCCccCCEEEEEcCc-HHHHHHHHHHHHCCC
Confidence 1 010 13566888888887777889999999964 789999999987765
No 109
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=66.69 E-value=37 Score=34.53 Aligned_cols=129 Identities=19% Similarity=0.090 Sum_probs=74.5
Q ss_pred EEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCC---cccHH--hhhccccCCCCCCccEEEEcCCCCCC-------C
Q psy4615 107 ILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLT---LFGRS--KLINPMSIPISTGVSSHISQLPLPEH-------M 174 (477)
Q Consensus 107 I~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~---~~t~e--~~I~~L~~N~D~~V~GILVqlPLP~~-------l 174 (477)
-.+|+.-+-...=..--.+.+++|+++. ...+.-. .+.++ +.++.+ .+.++.|+-|-+|.-.. +
T Consensus 9 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~-Y~~~~v~~~~v~~~~l~~~~~~l---~~~~~~G~nVTiP~K~~v~~~~D~~ 84 (284)
T PRK12549 9 GLIGAGIQASLSPAMHEAEGDAQGLRYV-YRLIDLDALGLTADALPELLDAA---ERMGFAGLNITHPCKQAVIPHLDEL 84 (284)
T ss_pred EEECCCcccccCHHHHHHHHHHcCCCeE-EEEEeeccccCCHHHHHHHHHHH---HhcCCCEEEECcCCHHHHHHHhccC
Confidence 3456542222222333567889999988 6666432 10112 556655 24478999999996421 1
Q ss_pred cH-HHHHhhcCCCCCCCC-CCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCC
Q psy4615 175 VE-RAVCNAVAPHKDVDG-FNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADG 252 (477)
Q Consensus 175 d~-~~l~~aI~p~KDVDG-l~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~ 252 (477)
++ .+...+++.-..-|| +.-+ =.-..|+++.|+..+.++.||+++|+|. .-+|+..+..|...+
T Consensus 85 ~~~A~~iGAvNTv~~~~g~l~G~-------------NTD~~G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G 150 (284)
T PRK12549 85 SDDARALGAVNTVVFRDGRRIGH-------------NTDWSGFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLG 150 (284)
T ss_pred CHHHHHhCCceEEEecCCEEEEE-------------cCCHHHHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcC
Confidence 11 112122211110011 1111 1256688999988777889999999994 557999999998877
Q ss_pred C
Q psy4615 253 A 253 (477)
Q Consensus 253 a 253 (477)
+
T Consensus 151 ~ 151 (284)
T PRK12549 151 V 151 (284)
T ss_pred C
Confidence 5
No 110
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=66.18 E-value=21 Score=34.97 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=37.8
Q ss_pred CEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEc
Q psy4615 102 PTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 102 P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVq 167 (477)
..+++|.-. .++--..-.+...+.|++.|.+.. ......+.+.+.+.++.+ .. .+|||||+.
T Consensus 36 ~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~~~~~~~i~~l--~~-~~vDgiIi~ 98 (309)
T PRK11041 36 RTILVIVPDICDPFFSEIIRGIEVTAAEHGYLVL-IGDCAHQNQQEKTFVNLI--IT-KQIDGMLLL 98 (309)
T ss_pred cEEEEEeCCCcCccHHHHHHHHHHHHHHCCCEEE-EEeCCCChHHHHHHHHHH--HH-cCCCEEEEe
Confidence 356665532 223333345778899999998887 655444431122666666 33 469999995
No 111
>PLN02477 glutamate dehydrogenase
Probab=65.97 E-value=13 Score=40.27 Aligned_cols=64 Identities=28% Similarity=0.369 Sum_probs=48.5
Q ss_pred CcccCCHHHH----HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC---CccccceEEccCCCCCCh
Q psy4615 206 TLIPCTPLGV----QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYITPVPGGVGP 271 (477)
Q Consensus 206 ~f~PcTa~Av----~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a---~v~~~a~~iTPVpGGVGp 271 (477)
.-.+.|+.++ .+.++++|.+++|++++|.| -..||+-++.+|..+++ .|.+..+.+.. |.|+.+
T Consensus 180 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqG-fGnVG~~~A~~L~e~GakVVaVsD~~G~iy~-~~GLD~ 250 (410)
T PLN02477 180 GREAATGRGVVFATEALLAEHGKSIAGQTFVIQG-FGNVGSWAAQLIHEKGGKIVAVSDITGAVKN-ENGLDI 250 (410)
T ss_pred CCCccchHHHHHHHHHHHHHcCCCccCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEECCCCeEEC-CCCCCH
Confidence 3457899954 56667789999999999999 78889999999999998 34444444443 566664
No 112
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=64.69 E-value=18 Score=36.29 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=69.8
Q ss_pred HHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhh
Q psy4615 122 KMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFC 201 (477)
Q Consensus 122 k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~ 201 (477)
--.++++.|++.. ...+.-..++.++.++.+ ... ++.|.-|-+|.-.. .-.+++.+++.-- -+-..|. +.
T Consensus 24 hn~~~~~~gl~~~-y~~~~v~~~~l~~~~~~~--~~~-~~~G~nVT~P~K~~--~~~~~d~~~~~A~--~igavNt--v~ 93 (278)
T PRK00258 24 HNAAFKQLGLDGV-YLAILVPPEDLEDAVKGF--FAL-GGRGANVTVPFKEA--AFALADELSERAR--LIGAVNT--LV 93 (278)
T ss_pred HHHHHHHcCCCcE-EEEEecCHHHHHHHHHHH--HhC-CCCEEEECcCCHHH--HHHHhhcCCHHHH--HhCCceE--EE
Confidence 3678889999888 666643320112666666 433 68999999995321 1112222211100 0001110 00
Q ss_pred cCCCCc--ccCCHHHHHHHHHH-hCCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 202 LDLKTL--IPCTPLGVQELIRR-YKVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 202 ~g~~~f--~PcTa~Av~~Lle~-~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
.....+ .=-...|.+..+++ .+.++.||+++|+| +.-+|+.++..|+.++.
T Consensus 94 ~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~k~vlVlG-aGg~a~ai~~aL~~~g~ 147 (278)
T PRK00258 94 LEDGRLIGDNTDGIGFVRALEERLGVDLKGKRILILG-AGGAARAVILPLLDLGV 147 (278)
T ss_pred eeCCEEEEEcccHHHHHHHHHhccCCCCCCCEEEEEc-CcHHHHHHHHHHHHcCC
Confidence 000000 01256688888886 57899999999999 56779999999988773
No 113
>KOG0089|consensus
Probab=64.35 E-value=3.3 Score=42.58 Aligned_cols=17 Identities=71% Similarity=1.228 Sum_probs=15.5
Q ss_pred CCCCCeEEEEecCCCCC
Q psy4615 1 MVKPGACVIDVGITRIK 17 (477)
Q Consensus 1 ~vk~gavVIDvGin~~~ 17 (477)
|||||+.|||+|||++.
T Consensus 237 ~Ik~Ga~vidvgin~v~ 253 (309)
T KOG0089|consen 237 MIKPGAAVIDVGINRVH 253 (309)
T ss_pred eeecCceeEecCCCccc
Confidence 89999999999999863
No 114
>PRK09492 treR trehalose repressor; Provisional
Probab=64.26 E-value=24 Score=34.75 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=39.5
Q ss_pred CCEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 101 VPTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 101 ~P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
...+++|.-. +++-....++...+.|++.|.... ......+. ..+ +.++.+ . +.+|+|||+.
T Consensus 62 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~-~~~~~~~~-~~~~~~~~~l--~-~~~vdgiIi~ 125 (315)
T PRK09492 62 DKVVGIIVSRLDSLSENQAVRTMLPAFYEQGYDPI-IMESQFSP-EKVNEHLGVL--K-RRNVDGVILF 125 (315)
T ss_pred CCeEEEEecCCcCcccHHHHHHHHHHHHHcCCeEE-EEecCCCh-HHHHHHHHHH--H-hcCCCEEEEe
Confidence 3467776643 244445567888899999998877 55443333 222 556666 3 3469999996
No 115
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=62.81 E-value=12 Score=36.64 Aligned_cols=55 Identities=29% Similarity=0.447 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC---CccccceEEccCCCCCCh
Q psy4615 214 GVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYITPVPGGVGP 271 (477)
Q Consensus 214 Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a---~v~~~a~~iTPVpGGVGp 271 (477)
++.+.+++.+.+++|++++|.| ...||.-++.+|..+++ .|.+..+.+.. | |+.+
T Consensus 9 ~~~~~~~~~~~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~-~-Gld~ 66 (217)
T cd05211 9 AMKAAMKHLGDSLEGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAVSDPDGYIYD-P-GITT 66 (217)
T ss_pred HHHHHHHHcCCCcCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEEcCCCcEEC-C-CCCH
Confidence 4556667778899999999999 78889999999999977 34444444443 4 7765
No 116
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=62.18 E-value=1.6e+02 Score=31.46 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCc
Q psy4615 80 ANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTL 143 (477)
Q Consensus 80 A~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~ 143 (477)
+..+.+.++.-+..+++++ + ++.+=--|-||.. .++..++.|++.|+.++ +-.+..+.
T Consensus 53 ~~~~~~~L~~~L~~~~~~g-I--kvI~NaGg~np~~--~a~~v~eia~e~Gl~lk-vA~V~gDd 110 (362)
T PF07287_consen 53 APDFVRDLRPLLPAAAEKG-I--KVITNAGGLNPAG--CADIVREIARELGLSLK-VAVVYGDD 110 (362)
T ss_pred hHHHHHHHHHHHHHHHhCC-C--CEEEeCCCCCHHH--HHHHHHHHHHhcCCCee-EEEEECcc
Confidence 4455667777777776654 2 2433333446655 88999999999999988 66665544
No 117
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=61.74 E-value=13 Score=34.93 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 214 GVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 214 Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
++.+.+++.|++++|++++|+|-+.-+|+.++.+|..++..
T Consensus 14 ~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~ 54 (194)
T cd01078 14 AAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGAR 54 (194)
T ss_pred HHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCE
Confidence 34455566788999999999998788999999999887764
No 118
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.22 E-value=4.4 Score=41.73 Aligned_cols=16 Identities=56% Similarity=0.698 Sum_probs=14.6
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|||+|++|||||+|++
T Consensus 219 ~vk~gavVIDvGi~~~ 234 (286)
T PRK14175 219 VVKEGAVIIDVGNTPD 234 (286)
T ss_pred HcCCCcEEEEcCCCcC
Confidence 7899999999999983
No 119
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=60.47 E-value=8.7 Score=42.29 Aligned_cols=39 Identities=38% Similarity=0.493 Sum_probs=33.1
Q ss_pred HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 216 QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 216 ~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
-.+++..++.+.||+++|+|.+. +|+++|..|...++.|
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~V 280 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGD-VGKGCAQALRGFGARV 280 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCH-HHHHHHHHHHHCCCEE
Confidence 34556678999999999999886 8999999999888844
No 120
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=60.25 E-value=25 Score=38.53 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=77.2
Q ss_pred EEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCCC-------CcH-HH
Q psy4615 107 ILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEH-------MVE-RA 178 (477)
Q Consensus 107 I~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~~-------ld~-~~ 178 (477)
-.+|+.-+-...=..--.+.++.|+++. ...++-+.+..++.++.+ .+.++.|.-|-+|.-.. +|+ .+
T Consensus 219 ~liG~pi~hS~SP~~hn~~f~~~gl~~~-Y~~~~v~~~~l~~~~~~~---~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~ 294 (477)
T PRK09310 219 GLIGDPVDRSISHLSHNPLFSQLSLNCP-YIKLPLTPQELPKFFSTI---RDLPFLGLSVTMPLKTAVLDFLDKLDPSVK 294 (477)
T ss_pred EEECCCcccccCHHHHHHHHHHcCCCcE-EEEeecCHHHHHHHHHHH---HhCCCCEEEECccCHHHHHHHhccCCHHHH
Confidence 3567643221112233567789999988 665543320112455544 34469999999986421 111 11
Q ss_pred HHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 179 VCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 179 l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
...+++.-..-|| ++ .|. =....|+++.|++.+.++.||+++|+|- .-+|++++..|...++.
T Consensus 295 ~iGAVNTv~~~~g-------~l-~G~----NTD~~G~~~~l~~~~~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~ 357 (477)
T PRK09310 295 LCGSCNTLVFRNG-------KI-EGY----NTDGEGLFSLLKQKNIPLNNQHVAIVGA-GGAAKAIATTLARAGAE 357 (477)
T ss_pred HhCcceEEEeeCC-------EE-EEE----ecCHHHHHHHHHhcCCCcCCCEEEEEcC-cHHHHHHHHHHHHCCCE
Confidence 2222221110011 11 111 1356699999999999999999999995 57899999999888764
No 121
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=58.66 E-value=65 Score=32.26 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=41.1
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEE
Q psy4615 101 VPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHIS 166 (477)
Q Consensus 101 ~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILV 166 (477)
..+++++.-.+.+.|..+.+...+.+++.|++.. .+.++... .-++.++.+ .+ +++++++
T Consensus 131 ~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~-~~~v~~~~-~~~~~~~~l--~~--~~da~~~ 190 (294)
T PF04392_consen 131 AKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELV-EIPVPSSE-DLEQALEAL--AE--KVDALYL 190 (294)
T ss_dssp --EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEE-EEEESSGG-GHHHHHHHH--CT--T-SEEEE
T ss_pred CCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEE-EEecCcHh-HHHHHHHHh--hc--cCCEEEE
Confidence 3478777765566688889999999999999998 77776544 223777888 54 4677766
No 122
>PRK09414 glutamate dehydrogenase; Provisional
Probab=54.62 E-value=23 Score=38.68 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=47.4
Q ss_pred CcccCCHHHH----HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC---ccccceEEccCCCCCCh
Q psy4615 206 TLIPCTPLGV----QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG---VSEVAGYITPVPGGVGP 271 (477)
Q Consensus 206 ~f~PcTa~Av----~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~---v~~~a~~iTPVpGGVGp 271 (477)
.-.+.|+.++ .+.+++.+.+++|++++|.| ...||.-+|.+|...++. +.+..+.+. -|.|+.+
T Consensus 206 gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqG-fGnVG~~~A~~L~~~GakVVavsDs~G~iy-n~~GLD~ 276 (445)
T PRK09414 206 IRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSG-SGNVAIYAIEKAQQLGAKVVTCSDSSGYVY-DEEGIDL 276 (445)
T ss_pred CCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEcCCceEE-CCCCCCH
Confidence 3567899865 55566679999999999999 678899999999999883 333344443 2567764
No 123
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=53.93 E-value=12 Score=35.51 Aligned_cols=31 Identities=35% Similarity=0.448 Sum_probs=28.2
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||+++|+|-+.-+|..++..|+++++.|
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v 32 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADI 32 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999998754
No 124
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=52.45 E-value=2e+02 Score=30.56 Aligned_cols=140 Identities=15% Similarity=0.045 Sum_probs=78.6
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCc-----ccHHhhhccccCCCCCCccEEEEcCCCC---CCC
Q psy4615 103 TLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTL-----FGRSKLINPMSIPISTGVSSHISQLPLP---EHM 174 (477)
Q Consensus 103 ~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~-----~t~e~~I~~L~~N~D~~V~GILVqlPLP---~~l 174 (477)
+..+..+- .|+.+. --+=..++.++|.++. .+. +.++ |+.++.++-| +. -+|+|++=.|-. .|-
T Consensus 43 k~v~~lF~-epSTRT-R~SFE~A~~~LGg~~i-~l~-~~~s~~~kgEsl~Dtarvl--s~--y~D~Iv~R~~~~~~~~~~ 114 (357)
T TIGR03316 43 GLGISLFR-DNSTRT-RFSFASAMNLLGLHAQ-DLD-EGKSQIGHGETVRETAEMI--SF--FADGIGIRDDMYIGVGNA 114 (357)
T ss_pred CEEEEEEc-CCCcch-HHHHHHHHHHcCCcEE-EeC-CccccCCCCCCHHHHHHHH--HH--hCcEEEEeCCCccccccH
Confidence 34444442 333333 3345788999999888 654 2222 0111444444 22 388999986642 233
Q ss_pred cHHHHHhh-cCCCCC-C--CCCCccchHHhhcCCCCcccCCHHH-HHHHHHHhCC--CCCCCeEEEEC-------CCCCc
Q psy4615 175 VERAVCNA-VAPHKD-V--DGFNIVNVGRFCLDLKTLIPCTPLG-VQELIRRYKV--ETFGKNAVVCG-------RSKNV 240 (477)
Q Consensus 175 d~~~l~~a-I~p~KD-V--DGl~p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi--~l~Gk~vvViG-------rS~~V 240 (477)
..+++.+. ..--|| | -..+-+|. +...+.||=+.+ ++.+.++.|- .++|++++++| |.+.|
T Consensus 115 ~l~~~a~~~~~~~~~~~~~s~vPVINa-----~~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v 189 (357)
T TIGR03316 115 YMREVAKYVQEGYKDGVLEQRPPLVNL-----QCDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSV 189 (357)
T ss_pred HHHHHHHhhhhccccccccCCCCEEEC-----CCCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchH
Confidence 22333333 112233 0 02445554 345689998887 6777788874 48899999885 44455
Q ss_pred chHHHHHhhhCCCCc
Q psy4615 241 GMPIAMLLHADGAGV 255 (477)
Q Consensus 241 GkPLA~lL~~~~a~v 255 (477)
..-+..++..-|.++
T Consensus 190 ~~Sl~~~~~~~G~~v 204 (357)
T TIGR03316 190 PQGIIGLMTRFGMDV 204 (357)
T ss_pred HHHHHHHHHHcCCEE
Confidence 566666666666643
No 125
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=52.21 E-value=2.8e+02 Score=29.31 Aligned_cols=130 Identities=11% Similarity=0.091 Sum_probs=79.3
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH------hhhccccCCCCCCccEEEEcCCCCCCCcH
Q psy4615 103 TLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS------KLINPMSIPISTGVSSHISQLPLPEHMVE 176 (477)
Q Consensus 103 ~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e------~~I~~L~~N~D~~V~GILVqlPLP~~ld~ 176 (477)
+....++- .|+.+. --+=..++.++|.++. .+. +.++ +.. +.++-| +. -+|+|++-.+ .|-..
T Consensus 43 k~v~~lF~-epSTRT-R~SFe~A~~~LGg~~i-~l~-~~~s-s~~kgEsl~Dtarvl--s~--y~D~iviR~~--~~~~~ 111 (338)
T PRK02255 43 KTLGMIFE-QSSTRT-RVSFETAMTQLGGHAQ-YLA-PGQI-QLGGHESLEDTARVL--SR--LVDIIMARVD--RHQTV 111 (338)
T ss_pred CEEEEEeC-CCCcch-HHHHHHHHHHcCCeEE-EeC-cccc-cCCCCcCHHHHHHHH--HH--hCcEEEEecC--ChHHH
Confidence 34444443 333333 3345789999999877 554 2222 111 444444 33 3889988754 44444
Q ss_pred HHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHH-HHHHHHHhC--CCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 177 RAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLG-VQELIRRYK--VETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 177 ~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~g--i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
+.+.+.. ..+-+|. +.....||=+.+ ++.+.++.| -.++|++++++|..+.|-.-+..++..-|+
T Consensus 112 ~~~a~~~-------~vPVINa-----~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~ 179 (338)
T PRK02255 112 VELAKYA-------TVPVING-----MSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGM 179 (338)
T ss_pred HHHHHhC-------CCCEEEC-----CCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCC
Confidence 4443322 3566663 334579998886 677777775 269999999999866677777777766666
Q ss_pred Cc
Q psy4615 254 GV 255 (477)
Q Consensus 254 ~v 255 (477)
+|
T Consensus 180 ~v 181 (338)
T PRK02255 180 DF 181 (338)
T ss_pred EE
Confidence 43
No 126
>PLN02342 ornithine carbamoyltransferase
Probab=50.23 E-value=3.4e+02 Score=28.84 Aligned_cols=162 Identities=11% Similarity=-0.005 Sum_probs=94.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHcC--C------CCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCC
Q psy4615 71 AQIIDGKFIANTILEELKDEVKAWVALG--H------RVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLT 142 (477)
Q Consensus 71 a~ILdGk~lA~~I~~~lk~~v~~lk~~~--g------~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~ 142 (477)
-.+|+-..+.++=.+.|-+...++|+.. + ..-+.+..++- .|+.+. --+=..++.++|.++. .+.- .+
T Consensus 46 r~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~lF~-epSTRT-R~SFE~A~~~LGg~~i-~l~~-~~ 121 (348)
T PLN02342 46 KHFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAMIFT-KPSMRT-RVSFETGFFLLGGHAL-YLGP-DD 121 (348)
T ss_pred CCccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEEEec-CCCcch-HHHHHHHHHHcCCcEE-EeCc-cc
Confidence 3466666666554455555555555321 1 11233333342 333333 3345788999999887 5432 12
Q ss_pred c-----ccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHH-HH
Q psy4615 143 L-----FGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLG-VQ 216 (477)
Q Consensus 143 ~-----~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~A-v~ 216 (477)
+ |+.++.++-| . .-+|+|++=.| .+-..+++.+.. ..+-+|. +...+.||=+.+ ++
T Consensus 122 ss~~kGESl~DTarvL--s--~y~D~IviR~~--~~~~~~~la~~~-------~vPVINA-----~~~~~HPtQaLaDl~ 183 (348)
T PLN02342 122 IQLGKREETRDIARVL--S--RYNDIIMARVF--AHQDVLDLAEYS-------SVPVING-----LTDYNHPCQIMADAL 183 (348)
T ss_pred ccCCCCcCHHHHHHHH--H--HhCCEEEEeCC--ChHHHHHHHHhC-------CCCEEEC-----CCCCCChHHHHHHHH
Confidence 1 0111444444 2 23899999855 333333443332 3555664 344689998886 67
Q ss_pred HHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 217 ELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 217 ~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.++.| +++|++++++|..+.|-.-+..++..-|+++
T Consensus 184 Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v 221 (348)
T PLN02342 184 TIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHF 221 (348)
T ss_pred HHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEE
Confidence 7777888 6999999999986667677777777667643
No 127
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=49.47 E-value=58 Score=32.28 Aligned_cols=64 Identities=8% Similarity=-0.007 Sum_probs=39.0
Q ss_pred CCCEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEc
Q psy4615 100 RVPTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 100 ~~P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVq 167 (477)
....+++|.-. +++-....++.....|++.|.... ......+.+.+.+.++.+ . ..+|+|+|+.
T Consensus 58 ~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy~~~-i~~~~~~~~~~~~~~~~l--~-~~~vdGvIi~ 122 (311)
T TIGR02405 58 SDKVVAVIVSRLDSPSENLAVSGMLPVFYTAGYDPI-IMESQFSPQLTNEHLSVL--Q-KRNVDGVILF 122 (311)
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHHHCCCeEE-EecCCCChHHHHHHHHHH--H-hcCCCEEEEe
Confidence 34466666532 244444557888999999998877 554333331122556555 3 3469999995
No 128
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.70 E-value=75 Score=30.29 Aligned_cols=56 Identities=9% Similarity=0.005 Sum_probs=38.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPL 170 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPL 170 (477)
+++-....++...+.|++.|.... ......+.+.+.+.++.+ .. .+|||||+.-+.
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~~~~~~~i~~l--~~-~~vdgiIi~~~~ 65 (273)
T cd06292 10 SNPIFPAFAEAIEAALAQYGYTVL-LCNTYRGGVSEADYVEDL--LA-RGVRGVVFISSL 65 (273)
T ss_pred cCchHHHHHHHHHHHHHHCCCEEE-EEeCCCChHHHHHHHHHH--HH-cCCCEEEEeCCC
Confidence 456667778999999999998887 554433331222677777 43 479999997544
No 129
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=46.99 E-value=64 Score=30.43 Aligned_cols=54 Identities=11% Similarity=-0.045 Sum_probs=37.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCC
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLP 169 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlP 169 (477)
++-...+.+...+.|++.|++.. ......+. .+++.+.++ -...+++||++..+
T Consensus 15 ~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~--~~~~~vdgiii~~~ 68 (268)
T cd06271 15 DPFFAEFLSGLSEALAEHGYDLV-LLPVDPDE-DPLEVYRRL--VESGLVDGVIISRT 68 (268)
T ss_pred CccHHHHHHHHHHHHHHCCceEE-EecCCCcH-HHHHHHHHH--HHcCCCCEEEEecC
Confidence 56667778889999999999988 66554443 333455554 33457999999643
No 130
>PRK05717 oxidoreductase; Validated
Probab=46.78 E-value=19 Score=34.56 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=29.5
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+..++||.++|+|-+.-+|+-++..|+.+++.|
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v 37 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQV 37 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEE
Confidence 457899999999999999999999999988744
No 131
>PRK08628 short chain dehydrogenase; Provisional
Probab=46.21 E-value=21 Score=34.21 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=29.8
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++++||.++|+|.+.-+|+-++..|+++++.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v 34 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIP 34 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcE
Confidence 367899999999999999999999999998854
No 132
>PRK06138 short chain dehydrogenase; Provisional
Probab=46.11 E-value=19 Score=34.09 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||.++|+|.+.-+|+-++..|+++++.|
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v 32 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARV 32 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 4689999999999999999999999988744
No 133
>PRK08339 short chain dehydrogenase; Provisional
Probab=46.03 E-value=19 Score=35.15 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=28.9
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++.||.++|+|.+.-+|+-++..|+.+|+.|
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V 35 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADV 35 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEE
Confidence 45789999999999999999999999999854
No 134
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=45.93 E-value=1.5e+02 Score=27.28 Aligned_cols=65 Identities=8% Similarity=-0.030 Sum_probs=42.1
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCC
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPE 172 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~ 172 (477)
++++.-+ +.+....+.+..++++++.|+++. .+....+.+++.+.++++ - ..+++||++.-..+.
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~l~-~~~~~~~~~~~~~~~~~~--~-~~~~d~ii~~~~~~~ 67 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVL-LANSQNDAEKQLSALENL--I-ARGVDGIIIAPSDLT 67 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCCeEE-EEeCCCCHHHHHHHHHHH--H-HcCCCEEEEecCCCc
Confidence 5556554 355667788899999999999888 665444331112666665 2 236899999654443
No 135
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=45.32 E-value=3.2e+02 Score=29.61 Aligned_cols=145 Identities=17% Similarity=0.088 Sum_probs=83.0
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCc-----ccHHhhhccccCCCCCCccEEEEcCCC---CCCC
Q psy4615 103 TLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTL-----FGRSKLINPMSIPISTGVSSHISQLPL---PEHM 174 (477)
Q Consensus 103 ~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~-----~t~e~~I~~L~~N~D~~V~GILVqlPL---P~~l 174 (477)
++++..+- .|+.+. --+=..++.++|.++. .+.- .++ ||-++.++-| +. -+|+|++=.|- ..+-
T Consensus 60 ~~~~~lF~-epSTRT-R~SFE~A~~~LGg~~i-~l~~-~~ss~~kGEsl~DTarvL--s~--y~D~IviR~~~~~g~~~~ 131 (395)
T PRK07200 60 GLGISVFR-DNSTRT-RFSYASACNLLGLEVQ-DLDE-GKSQIAHGETVRETANMI--SF--MADVIGIRDDMYIGKGNA 131 (395)
T ss_pred CeEEEEEc-CCCchh-HHHHHHHHHHcCCCEE-EcCC-ccccCCCCCCHHHHHHHH--HH--hCCEEEEecCcccccccH
Confidence 44543443 333333 3345789999999887 5532 222 0111444444 33 38999998774 3343
Q ss_pred cHHHHHhhcCC--CCCC-CCCCc-cchHHhhcCCCCcccCCHHH-HHHHHHHhCC--CCCCCeEEEE-------CCCCCc
Q psy4615 175 VERAVCNAVAP--HKDV-DGFNI-VNVGRFCLDLKTLIPCTPLG-VQELIRRYKV--ETFGKNAVVC-------GRSKNV 240 (477)
Q Consensus 175 d~~~l~~aI~p--~KDV-DGl~p-~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi--~l~Gk~vvVi-------GrS~~V 240 (477)
..+++.+...- .++| -...| +|. +.....||=+.+ ++++.|+.|- .++|++++++ ||.+.|
T Consensus 132 ~~~ela~~~~~~~~~~~~~~~pPVINa-----~~~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~V 206 (395)
T PRK07200 132 YMREVGAAVDDGYKQGVLPQRPTLVNL-----QCDIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSV 206 (395)
T ss_pred HHHHHHHHhhhhcccccccCCCeEEEC-----CCCCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchH
Confidence 33444333210 0111 12233 664 234688998887 6788888874 3899999988 455666
Q ss_pred chHHHHHhhhCCCCccccceEEcc
Q psy4615 241 GMPIAMLLHADGAGVSEVAGYITP 264 (477)
Q Consensus 241 GkPLA~lL~~~~a~v~~~a~~iTP 264 (477)
..-+..++..-|.++ ...+|
T Consensus 207 a~Sl~~~~~~lG~~v----~~~~P 226 (395)
T PRK07200 207 PQGIIGLMTRFGMDV----TLAHP 226 (395)
T ss_pred HHHHHHHHHHcCCEE----EEECC
Confidence 677777776666654 35566
No 136
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=45.22 E-value=3.9e+02 Score=28.13 Aligned_cols=116 Identities=9% Similarity=-0.042 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCeeeeeEEecCCc-----ccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCC
Q psy4615 119 VNNKMKSAAKVGEVNALGVLYHLTL-----FGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFN 193 (477)
Q Consensus 119 v~~k~k~a~~vGI~~~~~~~lp~~~-----~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~ 193 (477)
--+=..+|.++|..+. ... +.++ |+-++.++-| +.-+|+|++-.| ++-..+++.+.. .++
T Consensus 61 R~SFe~A~~~LGg~~i-~l~-~~~ss~~kgEsl~Dt~rvl----s~y~D~iviR~~--~~~~~~~~a~~~-------~vP 125 (331)
T PRK02102 61 RCAFEVAAIDLGAHVT-YLG-PNDSQLGKKESIEDTARVL----GRMYDGIEYRGF--KQEIVEELAKYS-------GVP 125 (331)
T ss_pred HHHHHHHHHHcCCCEE-EcC-cccccCCCCcCHHHHHHHH----hhcCCEEEEECC--chHHHHHHHHhC-------CCC
Confidence 3455789999999877 543 2222 0111455545 334899999865 333333443332 245
Q ss_pred ccchHHhhcCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCC-CCcchHHHHHhhhCCCCc
Q psy4615 194 IVNVGRFCLDLKTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRS-KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 194 p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS-~~VGkPLA~lL~~~~a~v 255 (477)
-+|. |.....||=+.+ ++.+.++.| .++|++++++|-. +-|-..+..++..-|.++
T Consensus 126 VINa-----~~~~~HPtQaLaDl~Ti~e~~g-~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v 183 (331)
T PRK02102 126 VWNG-----LTDEWHPTQMLADFMTMKEHFG-PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDV 183 (331)
T ss_pred EEEC-----CCCCCChHHHHHHHHHHHHHhC-CCCCCEEEEECCCcccHHHHHHHHHHHcCCEE
Confidence 5664 345688998886 666667776 6899999999974 447777888777767644
No 137
>PRK12742 oxidoreductase; Provisional
Probab=44.95 E-value=22 Score=33.48 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=27.7
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+.++..|+.++++|
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v 33 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANV 33 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 3679999999999999999999999998743
No 138
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=43.99 E-value=3.8e+02 Score=27.73 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=79.8
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccH---H---hhhccccCCCCCCccEEEEcCCCCCCCcH
Q psy4615 103 TLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGR---S---KLINPMSIPISTGVSSHISQLPLPEHMVE 176 (477)
Q Consensus 103 ~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~---e---~~I~~L~~N~D~~V~GILVqlPLP~~ld~ 176 (477)
+.....+ ..| |..=--+=..++.++|..+. .+.-+.++ +- | +..+-| +. -+|+|++=.+ .|-..
T Consensus 40 k~v~~lF-~~p-STRTR~SFe~A~~~LGg~~i-~l~~~~~s-~~~kgEsi~Dta~vl--s~--y~D~iviR~~--~~~~~ 109 (301)
T TIGR00670 40 KILANLF-FEP-STRTRLSFETAMKRLGGDVV-NFSDSETS-SVAKGETLADTIKTL--SG--YSDAIVIRHP--LEGAA 109 (301)
T ss_pred CEEEEEe-ccC-CchhHhHHHHHHHHcCCcEE-EcCCCCcc-cCCCCcCHHHHHHHH--HH--hCCEEEEECC--chhHH
Confidence 3344444 233 33333455789999999777 44321222 11 1 444444 22 2889999754 45554
Q ss_pred HHHHhhcCCCCCCCCCCccchHHhhcCC-CCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCC--CCcchHHHHHhhhCC
Q psy4615 177 RAVCNAVAPHKDVDGFNIVNVGRFCLDL-KTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRS--KNVGMPIAMLLHADG 252 (477)
Q Consensus 177 ~~l~~aI~p~KDVDGl~p~nlg~l~~g~-~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS--~~VGkPLA~lL~~~~ 252 (477)
.++.+.. ..+-+|. |. ..+.||=+.| ++.+.|++| +++|++++++|-. +-|-.-+..++..-|
T Consensus 110 ~~~a~~s-------~vPVINa-----~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g 176 (301)
T TIGR00670 110 RLAAEVS-------EVPVINA-----GDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFG 176 (301)
T ss_pred HHHHhhC-------CCCEEeC-----CCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcC
Confidence 4554442 3555664 33 3589998887 667777788 6999999999975 566677777777767
Q ss_pred CCc
Q psy4615 253 AGV 255 (477)
Q Consensus 253 a~v 255 (477)
.++
T Consensus 177 ~~v 179 (301)
T TIGR00670 177 VEV 179 (301)
T ss_pred CEE
Confidence 654
No 139
>PRK06523 short chain dehydrogenase; Provisional
Probab=43.58 E-value=25 Score=33.74 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v 36 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARV 36 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEE
Confidence 5789999999999999999999999998854
No 140
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=42.95 E-value=4e+02 Score=27.56 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCCeeeeeEEecCCc-----ccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCC
Q psy4615 118 YVNNKMKSAAKVGEVNALGVLYHLTL-----FGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGF 192 (477)
Q Consensus 118 Yv~~k~k~a~~vGI~~~~~~~lp~~~-----~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl 192 (477)
=--+=..+|.++|.++. .+.- ..+ |+.++.++-| +.-+|+|.+-.| .+-..+.+.+.. +.
T Consensus 57 TR~SFe~A~~~LGg~~i-~l~~-~~ss~~kgEsl~Dt~~~l----~~~~D~iv~R~~--~~~~~~~~a~~~-------~v 121 (304)
T PRK00779 57 TRVSFEVGMAQLGGHAI-FLSP-RDTQLGRGEPIEDTARVL----SRYVDAIMIRTF--EHETLEELAEYS-------TV 121 (304)
T ss_pred HHHHHHHHHHHcCCcEE-EECc-ccccCCCCcCHHHHHHHH----HHhCCEEEEcCC--ChhHHHHHHHhC-------CC
Confidence 33455889999999877 5532 121 0111555545 223788888754 333333343322 35
Q ss_pred CccchHHhhcCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 193 NIVNVGRFCLDLKTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 193 ~p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+-+|.| .....||=+.+ ++.+.++.| .++|++++++|...-|-.-++.+|..-|+++
T Consensus 122 PVINag-----~~~~HPtQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v 179 (304)
T PRK00779 122 PVINGL-----TDLSHPCQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDL 179 (304)
T ss_pred CEEeCC-----CCCCChHHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEE
Confidence 666753 35688998886 667777777 5899999999985667777777777767654
No 141
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.80 E-value=11 Score=38.61 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.5
Q ss_pred CCCCCeEEEEecCCCC
Q psy4615 1 MVKPGACVIDVGITRI 16 (477)
Q Consensus 1 ~vk~gavVIDvGin~~ 16 (477)
|+++|++|||||+|+.
T Consensus 220 ~lk~gavViDvg~n~~ 235 (283)
T PRK14192 220 WIKQGAVVVDAGFHPR 235 (283)
T ss_pred HcCCCCEEEEEEEeec
Confidence 6899999999999974
No 142
>PRK12828 short chain dehydrogenase; Provisional
Probab=42.61 E-value=26 Score=32.70 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=27.6
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+..+|..++..|+++++.|
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v 34 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARV 34 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeE
Confidence 3579999999999999999999999998754
No 143
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=42.58 E-value=25 Score=33.66 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=29.2
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.++||.++|+|-+.-+|+.++..|..+++.|
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v 38 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHV 38 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeE
Confidence 356899999999999999999999999988744
No 144
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=42.44 E-value=24 Score=35.68 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.+||+++|+|.+..+|+.++..|..++.+|
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V 33 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEV 33 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEE
Confidence 4678999999999999999999999888743
No 145
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=42.24 E-value=76 Score=30.03 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=38.3
Q ss_pred EEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcC
Q psy4615 105 TAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 105 aiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVql 168 (477)
++|.-. +++-...+.+...++|++.|+++. .+.-..+. ..+ +.++.+ ...+|||||+.-
T Consensus 3 gvv~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~l---~~~~vdgiIi~~ 63 (265)
T cd06299 3 GVIVPDIRNPYFASLATAIQDAASAAGYSTI-IGNSDENP-ETENRYLDNL---LSQRVDGIIVVP 63 (265)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHHcCCEEE-EEeCCCCH-HHHHHHHHHH---HhcCCCEEEEcC
Confidence 444432 455556677888999999999888 65443333 222 566665 244799999963
No 146
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=41.05 E-value=54 Score=31.84 Aligned_cols=60 Identities=8% Similarity=-0.027 Sum_probs=40.5
Q ss_pred EEEEEeC----CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcC
Q psy4615 104 LTAILVG----NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 104 LaiI~vG----dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVql 168 (477)
+++|.-. +++-...-++...+.|++.|.++. ...-. +.+.+++.++.+ .+.+|+||++.-
T Consensus 2 I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~~~-i~~~~-~~~~~~~~i~~l---~~~~vdgiI~~~ 65 (265)
T cd06354 2 VALVTDVGGLGDKSFNQSAWEGLERAAKELGIEYK-YVESK-SDADYEPNLEQL---ADAGYDLIVGVG 65 (265)
T ss_pred EEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCeEE-EEecC-CHHHHHHHHHHH---HhCCCCEEEEcC
Confidence 5666643 466677778899999999999888 54322 221222666666 346799999963
No 147
>PRK07774 short chain dehydrogenase; Provisional
Probab=40.99 E-value=25 Score=33.37 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||+++|+|-+.-+|..++..|+.+++.|
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v 33 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASV 33 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 4689999999999999999999999998754
No 148
>PRK07062 short chain dehydrogenase; Provisional
Probab=40.98 E-value=26 Score=33.80 Aligned_cols=32 Identities=38% Similarity=0.549 Sum_probs=29.0
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V 35 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASV 35 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 46789999999999999999999999998854
No 149
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=40.44 E-value=1.7e+02 Score=29.75 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=78.0
Q ss_pred CCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCCC------
Q psy4615 100 RVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEH------ 173 (477)
Q Consensus 100 ~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~~------ 173 (477)
..++|..=++|+. -|++-. .--.+.+++|+++. ...++.+ ..++.++.+ . +.++.|.-|-+|.-..
T Consensus 7 ~~~~~~~gliG~P-~~~Sp~-ihn~~f~~~gl~~~-Y~~~~~~--~l~~~~~~l--~-~~~~~G~nVT~P~K~~~~~~lD 78 (272)
T PRK12550 7 KDTQLCISLAARP-SNFGTR-FHNYLYEALGLNFL-YKAFTTT--DLTAAIGGV--R-ALGIRGCAVSMPFKEAVIPLVD 78 (272)
T ss_pred CCceEEEEEEccc-hhcCHH-HHHHHHHHcCCCcE-EEecCHh--HHHHHHHHH--H-hcCCCEEEECcCCHHHHHHHhh
Confidence 3566655566754 555544 55667889999988 7776522 223556655 3 2368999999996421
Q ss_pred -CcH-HHHHhhcCCCCCCCC-CCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhh
Q psy4615 174 -MVE-RAVCNAVAPHKDVDG-FNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHA 250 (477)
Q Consensus 174 -ld~-~~l~~aI~p~KDVDG-l~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~ 250 (477)
+|+ .+...+++.-..-|| ++-+| .-..|+++.|+..+++ .+|+++|+|.+. .++.++.-|..
T Consensus 79 ~l~~~A~~iGAVNTi~~~~g~l~G~N-------------TD~~Gf~~~L~~~~~~-~~~~vlilGaGG-aarAi~~aL~~ 143 (272)
T PRK12550 79 ELDPSAQAIESVNTIVNTDGHLKAYN-------------TDYIAIAKLLASYQVP-PDLVVALRGSGG-MAKAVAAALRD 143 (272)
T ss_pred cCCHHHHHhCCeeEEEeeCCEEEEEe-------------cCHHHHHHHHHhcCCC-CCCeEEEECCcH-HHHHHHHHHHH
Confidence 121 112222222111121 11222 3566889999888886 478999999544 47777777777
Q ss_pred CCC
Q psy4615 251 DGA 253 (477)
Q Consensus 251 ~~a 253 (477)
.+.
T Consensus 144 ~g~ 146 (272)
T PRK12550 144 AGF 146 (272)
T ss_pred CCC
Confidence 765
No 150
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=40.05 E-value=24 Score=34.03 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.6
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+.-+|+.++..|+.+++.|
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V 32 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARV 32 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 679999999999999999999999998854
No 151
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=40.03 E-value=82 Score=29.76 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=38.0
Q ss_pred EEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcC
Q psy4615 105 TAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 105 aiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVql 168 (477)
++|.-+ +++-.....+...+.|++.|.+.. ...-..+. ..+ +.++.+ +. ..|||||+.-
T Consensus 3 ~~i~~~~~~~~~~~i~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~i~~l--~~-~~vdgiii~~ 63 (260)
T cd06286 3 GVVLPYINHPYFSQLVDGIEKAALKHGYKVV-LLQTNYDK-EKELEYLELL--KT-KQVDGLILCS 63 (260)
T ss_pred EEEeCCCCCchHHHHHHHHHHHHHHcCCEEE-EEeCCCCh-HHHHHHHHHH--HH-cCCCEEEEeC
Confidence 444433 355556667888889999999887 55433333 222 667766 43 4699999963
No 152
>PRK07856 short chain dehydrogenase; Provisional
Probab=39.67 E-value=29 Score=33.22 Aligned_cols=31 Identities=32% Similarity=0.492 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v 33 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATV 33 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999988744
No 153
>PRK06398 aldose dehydrogenase; Validated
Probab=39.53 E-value=27 Score=33.81 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||.++|+|.+.-+|+-++..|..+|+.|
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V 33 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNV 33 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeE
Confidence 4789999999999999999999999998844
No 154
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.45 E-value=78 Score=30.04 Aligned_cols=57 Identities=11% Similarity=-0.042 Sum_probs=38.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLP 171 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP 171 (477)
+++-.....+.....|++.|+++. ...-..+.+.+.+.|+.+ .. .++|||++..+.+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~~~~~~~i~~l--~~-~~~dgiii~~~~~ 66 (270)
T cd06296 10 DSPWASEVLRGVEEAAAAAGYDVV-LSESGRRTSPERQWVERL--SA-RRTDGVILVTPEL 66 (270)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEE-EecCCCchHHHHHHHHHH--HH-cCCCEEEEecCCC
Confidence 355566667888899999999888 655444431222677777 44 4689999976654
No 155
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=39.45 E-value=27 Score=33.41 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=28.2
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||+++|+|-+.-+|+-++..|+.+|+.|
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V 37 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEV 37 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEE
Confidence 4789999999999999999999999998854
No 156
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=39.09 E-value=4.9e+02 Score=27.47 Aligned_cols=116 Identities=10% Similarity=-0.032 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCeeeeeEEecCCcccHH------hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCC
Q psy4615 119 VNNKMKSAAKVGEVNALGVLYHLTLFGRS------KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGF 192 (477)
Q Consensus 119 v~~k~k~a~~vGI~~~~~~~lp~~~~t~e------~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl 192 (477)
--+=..+|.++|..+. .+. +.++ +.. +.++-| + .-+|+|++-.| .+-...++.+.. ..
T Consensus 60 R~SFE~A~~~LGg~~i-~l~-~~~s-~~~kgEsl~Dtarvl--s--~y~D~iviR~~--~~~~~~~~a~~~-------~v 123 (334)
T PRK12562 60 RCSFEVAAYDQGARVT-YLG-PSGS-QIGHKESIKDTARVL--G--RMYDGIQYRGH--GQEVVETLAEYA-------GV 123 (334)
T ss_pred HHHHHHHHHHcCCeEE-EeC-Cccc-cCCCCcCHHHHHHHH--H--HhCCEEEEECC--chHHHHHHHHhC-------CC
Confidence 3455789999999888 654 2222 111 455544 3 23899999865 333333443332 25
Q ss_pred CccchHHhhcCCCCcccCCHHH-HHHHHHHhCC-CCCCCeEEEECCC-CCcchHHHHHhhhCCCCc
Q psy4615 193 NIVNVGRFCLDLKTLIPCTPLG-VQELIRRYKV-ETFGKNAVVCGRS-KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 193 ~p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi-~l~Gk~vvViGrS-~~VGkPLA~lL~~~~a~v 255 (477)
+-+|.+ .....||=+.+ ++.+.|+.|- .++|++++++|-. +.|...+..++..-|+++
T Consensus 124 PVINa~-----~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v 184 (334)
T PRK12562 124 PVWNGL-----TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDL 184 (334)
T ss_pred CEEECC-----CCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEE
Confidence 556642 34688998886 6777777764 5899999999963 347788888877767643
No 157
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=38.98 E-value=27 Score=33.26 Aligned_cols=31 Identities=42% Similarity=0.565 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||.++|+|-+.-+|..++..|++++++|
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v 34 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAV 34 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeE
Confidence 3679999999999999999999999998854
No 158
>PRK07890 short chain dehydrogenase; Provisional
Probab=38.80 E-value=29 Score=33.03 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=27.4
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V 32 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADV 32 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEE
Confidence 578999999999999999999999999854
No 159
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.76 E-value=28 Score=33.58 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=28.5
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+|+.|
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~v 35 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADI 35 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999999854
No 160
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=38.69 E-value=45 Score=29.56 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCC
Q psy4615 213 LGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADG 252 (477)
Q Consensus 213 ~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~ 252 (477)
.|+.+-+++.++++.++++.|+|- ..+|..++..|...+
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~-G~~g~~~a~~l~~~g 42 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGA-GGAARAVAYALAELG 42 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECC-cHHHHHHHHHHHHCC
Confidence 478888888999999999999995 578999999998765
No 161
>PRK06128 oxidoreductase; Provisional
Probab=38.37 E-value=27 Score=34.80 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|-+.-+|+-++..|+.+++.|
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V 82 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADI 82 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEE
Confidence 3789999999999999999999999998855
No 162
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.28 E-value=29 Score=33.35 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=28.4
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|.+.-+|+-++..|+.+|+.|
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v 42 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADI 42 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999998854
No 163
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=37.91 E-value=29 Score=33.60 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.4
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||.++|+|.+.-+|+.++..|+.+++.|
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v 35 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNI 35 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999998854
No 164
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=37.81 E-value=91 Score=29.35 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=36.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLP 169 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlP 169 (477)
+++-.....+...++|++.|+.+. .+.-..+. +.+ +.++.+ - ..++|||++.-+
T Consensus 10 ~~~~~~~~~~~i~~~a~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~-~~~~dgiii~~~ 64 (267)
T cd06283 10 TNPFSSLVLKGIEDVCRAHGYQVL-VCNSDNDP-EKEKEYLESL--L-AYQVDGLIVNPT 64 (267)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEE-EEcCCCCH-HHHHHHHHHH--H-HcCcCEEEEeCC
Confidence 455667778888999999998887 55433333 222 666666 3 347899999644
No 165
>PRK06196 oxidoreductase; Provisional
Probab=37.73 E-value=29 Score=34.81 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=30.1
Q ss_pred hCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 222 YKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 222 ~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+..++.||.++|+|.+.-+|.-++..|+.+++.|
T Consensus 20 ~~~~l~~k~vlITGasggIG~~~a~~L~~~G~~V 53 (315)
T PRK06196 20 AGHDLSGKTAIVTGGYSGLGLETTRALAQAGAHV 53 (315)
T ss_pred cCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 3567899999999999999999999999998754
No 166
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=37.59 E-value=31 Score=32.18 Aligned_cols=31 Identities=48% Similarity=0.666 Sum_probs=27.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.+|+++|+|.+.-+|+.++..|++++..|
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v 32 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKV 32 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEE
Confidence 3568999999999999999999999988743
No 167
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=37.14 E-value=52 Score=35.73 Aligned_cols=48 Identities=31% Similarity=0.277 Sum_probs=40.0
Q ss_pred CcccCCHHHH----HHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 206 TLIPCTPLGV----QELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 206 ~f~PcTa~Av----~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
.-.+.|+.++ .+.+++.+.+++|++|.|=| +..||.-++..|+..++.
T Consensus 181 ~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG-~GNVg~~aa~~l~~~GAk 232 (411)
T COG0334 181 GRSEATGYGVFYAIREALKALGDDLEGARVAVQG-FGNVGQYAAEKLHELGAK 232 (411)
T ss_pred CCCcccceehHHHHHHHHHHcCCCcCCCEEEEEC-ccHHHHHHHHHHHHcCCE
Confidence 3456888854 45666778899999999999 889999999999998983
No 168
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=36.57 E-value=1e+02 Score=28.52 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=42.5
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCCCCCC
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLPLPEH 173 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlPLP~~ 173 (477)
+++|.-. +++......+..+++|++.|+++. .+....+. ++. +.++.+ - ...++||++....+..
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~~--~-~~~~d~iii~~~~~~~ 68 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYSVL-LCNSDEDP-EKEREALELL--L-SRRVDGIILAPSRLDD 68 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCEEE-EEcCCCCH-HHHHHHHHHH--H-HcCcCEEEEecCCcch
Confidence 3444433 466677778899999999999988 66544433 222 666666 2 2368999997555443
No 169
>PRK06949 short chain dehydrogenase; Provisional
Probab=36.33 E-value=33 Score=32.72 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=28.6
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++++||.++|+|.+.-+|+-++..|..+++.|
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~V 36 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKV 36 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEE
Confidence 46889999999999999999999999988743
No 170
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=36.17 E-value=33 Score=32.46 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++||.++|+|.+.-+|+-++..|+++++.|
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v 30 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKV 30 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 478999999999999999999999998754
No 171
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=36.09 E-value=95 Score=32.00 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=47.3
Q ss_pred HHHhhhhcccCCCccccccccchHHHHHhhhcCCCCCCCCchhchHHHH-HHHHHHHHHHhcCCCC-CCccccceecccc
Q psy4615 373 AELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPGTPVVNALAQQ-RSCIENILRACLSLPP-ENSMTLEHKLPRR 450 (477)
Q Consensus 373 ~~~~~r~~~~~~~~~~~~~~~~vl~~Ls~~fK~P~~~~g~~~~~~l~~Q-~~~l~~~~~~~~g~~~-~~~~~~~~~~~~~ 450 (477)
...+++.|.+.+++-.--+|+. ..++.|+--|+ +++..+..+- +.+.+-.++.+.|.++ ..+..+..++..+
T Consensus 253 l~~~~~~g~~vP~disviGfDd--~~~~~~~~P~L----TTv~~~~~~~G~~A~~~Ll~~i~~~~~~~~~~~l~~~li~R 326 (333)
T COG1609 253 LRALRELGLRVPEDLSVIGFDD--IELARFLTPPL----TTVRQPIEELGRRAAELLLERINGEPVPPRRIVLPPELIVR 326 (333)
T ss_pred HHHHHHcCCCCCCeeEEEEecC--hhhhhhCCCCC----eeecCCHHHHHHHHHHHHHHHHcCCCCCCeeEEecceEEEe
Confidence 4456777887655556677777 55688888888 5565555542 3444455555557666 5666777776655
Q ss_pred cCC
Q psy4615 451 LFQ 453 (477)
Q Consensus 451 ~~~ 453 (477)
-+.
T Consensus 327 ~S~ 329 (333)
T COG1609 327 EST 329 (333)
T ss_pred cCC
Confidence 443
No 172
>PRK12827 short chain dehydrogenase; Provisional
Probab=35.96 E-value=34 Score=32.14 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=27.2
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.+|+++|+|.+.-+|.-++..|..+++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v 33 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADV 33 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeE
Confidence 578999999999999999999999998754
No 173
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.87 E-value=34 Score=33.75 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=27.6
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~V 33 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARV 33 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 689999999999999999999999998854
No 174
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.81 E-value=1.1e+02 Score=29.18 Aligned_cols=53 Identities=13% Similarity=-0.115 Sum_probs=35.7
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVql 168 (477)
+++-.....+...+.|++.|.++. ......+. .++ +.++.+ . ..++|||++.-
T Consensus 13 ~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~-~~~vdgiii~~ 66 (268)
T cd06277 13 SPAFYSEIYRAIEEEAKKYGYNLI-LKFVSDED-EEEFELPSFL--E-DGKVDGIILLG 66 (268)
T ss_pred cCCcHHHHHHHHHHHHHHcCCEEE-EEeCCCCh-HHHHHHHHHH--H-HCCCCEEEEeC
Confidence 366667777888899999999888 66554443 223 444544 3 34699999964
No 175
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.56 E-value=35 Score=32.79 Aligned_cols=32 Identities=41% Similarity=0.573 Sum_probs=28.3
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
..++||.++|+|-+.-+|..++..|.++++.|
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V 39 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARV 39 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEE
Confidence 35789999999999999999999999988743
No 176
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.08 E-value=36 Score=31.98 Aligned_cols=31 Identities=45% Similarity=0.630 Sum_probs=27.6
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.+|.++|+|.+.-+|.-++..|+++++.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v 32 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKV 32 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEE
Confidence 4678999999999999999999999888744
No 177
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=35.02 E-value=5.6e+02 Score=26.94 Aligned_cols=128 Identities=9% Similarity=-0.089 Sum_probs=76.2
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCc-----ccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHH
Q psy4615 104 LTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTL-----FGRSKLINPMSIPISTGVSSHISQLPLPEHMVERA 178 (477)
Q Consensus 104 LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~-----~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~ 178 (477)
++. ++- .|+.+.. -+=..++.++|.++. ... +.++ |+-++.++-| +. -+|+|++-.| +|-...+
T Consensus 48 l~~-lF~-epSTRTR-~SFe~A~~~LGg~~i-~l~-~~~ss~~kgEsl~DTarvl--s~--y~D~iviR~~--~~~~~~~ 116 (332)
T PRK04284 48 IAL-IFE-KDSTRTR-CAFEVAAYDQGAHVT-YLG-PTGSQMGKKESTKDTARVL--GG--MYDGIEYRGF--SQRTVET 116 (332)
T ss_pred EEE-Eec-CCChhHH-HHHHHHHHHcCCeEE-EcC-CccccCCCCcCHHHHHHHH--HH--hCCEEEEecC--chHHHHH
Confidence 444 442 3333333 345788999999877 442 2211 0111444444 33 3899999754 3333344
Q ss_pred HHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHH-HHHHHHH-hCCCCCCCeEEEECCC-CCcchHHHHHhhhCCCCc
Q psy4615 179 VCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLG-VQELIRR-YKVETFGKNAVVCGRS-KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 179 l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~A-v~~Lle~-~gi~l~Gk~vvViGrS-~~VGkPLA~lL~~~~a~v 255 (477)
+.+.. ..+-+|. +.....||=+.+ ++.+.++ .| .++|++++++|-. +-|-.-+..++..-|+++
T Consensus 117 ~a~~s-------~vPVINa-----~~~~~HPtQaL~Dl~Ti~e~~~g-~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v 183 (332)
T PRK04284 117 LAEYS-------GVPVWNG-----LTDEDHPTQVLADFLTAKEHLKK-PYKDIKFTYVGDGRNNVANALMQGAAIMGMDF 183 (332)
T ss_pred HHHhC-------CCCEEEC-----CCCCCChHHHHHHHHHHHHHhcC-CcCCcEEEEecCCCcchHHHHHHHHHHcCCEE
Confidence 43332 2555663 345689998886 5666666 46 6899999999963 346666777776667654
No 178
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=35.01 E-value=36 Score=32.56 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=28.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~v 36 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEI 36 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999988754
No 179
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=35.00 E-value=1.6e+02 Score=30.95 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCeeeeeEEecCCcccH------HhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCC
Q psy4615 120 NNKMKSAAKVGEVNALGVLYHLTLFGR------SKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFN 193 (477)
Q Consensus 120 ~~k~k~a~~vGI~~~~~~~lp~~~~t~------e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~ 193 (477)
-+=..++.++|.++. .+ +.+..+. ++.++-| +. -+|+|++-.| .+-..+++.+.. ..+
T Consensus 62 ~SFe~A~~~LGg~~i-~l--~~~~ss~~kgEsl~DTarvl--s~--y~D~iv~R~~--~~~~~~~~a~~~-------~vP 125 (334)
T PRK01713 62 CAFEVAAYDQGAQVT-YI--DPNSSQIGHKESMKDTARVL--GR--MYDAIEYRGF--KQSIVNELAEYA-------GVP 125 (334)
T ss_pred HHHHHHHHHcCCeEE-Ec--CCccccCCCCcCHHHHHHHH--HH--hCCEEEEEcC--chHHHHHHHHhC-------CCC
Confidence 344778899999877 54 3222011 1444544 33 3899999755 333333333332 245
Q ss_pred ccchHHhhcCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCC-CCcchHHHHHhhhCCCCc
Q psy4615 194 IVNVGRFCLDLKTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRS-KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 194 p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS-~~VGkPLA~lL~~~~a~v 255 (477)
-+|. +.....||=+.+ ++.+.++.|-+++|++++++|-. +.|..-+..++..-|+++
T Consensus 126 VINa-----~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v 184 (334)
T PRK01713 126 VFNG-----LTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDV 184 (334)
T ss_pred EEEC-----CCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEE
Confidence 5664 335688998886 67888877767899999999973 447777777777777654
No 180
>PRK12566 glycine dehydrogenase; Provisional
Probab=34.97 E-value=1.1e+02 Score=36.71 Aligned_cols=55 Identities=11% Similarity=0.013 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCC-CCC-cHHHHHhhc
Q psy4615 114 ASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLP-EHM-VERAVCNAV 183 (477)
Q Consensus 114 aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP-~~l-d~~~l~~aI 183 (477)
---.|....+..|+-.||+.. . ++. ++ .+ + .++-|++||+|=- ..+ |.+.+.+..
T Consensus 177 ~hP~~~~v~~t~~~~~g~~i~-~----~~~---~~---~~--~--~~~~~v~vq~P~~~G~i~d~~~i~~~~ 233 (954)
T PRK12566 177 CHPQTLSVLRTRAEGFGFELV-V----DAV---DN---LA--A--HAVFGALLQYPDTHGEIRDLRPLIDQL 233 (954)
T ss_pred CCHHHHHHHHHhhhcCCcEEE-E----cch---hh---cC--C--CCEEEEEEECCCCceEEccHHHHHHHH
Confidence 335677778899999999988 3 222 11 23 3 3599999999943 233 555665554
No 181
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=34.96 E-value=37 Score=32.70 Aligned_cols=31 Identities=39% Similarity=0.535 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v 36 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANV 36 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999998844
No 182
>PRK05867 short chain dehydrogenase; Provisional
Probab=34.91 E-value=35 Score=32.70 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|.-++..|+.+++.|
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V 36 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQV 36 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999998854
No 183
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.83 E-value=37 Score=32.53 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v 34 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKV 34 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 4679999999999999999999999998854
No 184
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.62 E-value=37 Score=34.15 Aligned_cols=33 Identities=36% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
..+++||.++|+|-+.-+|+-++..|+.+++.|
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~V 39 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATV 39 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999998854
No 185
>PRK12829 short chain dehydrogenase; Provisional
Probab=34.56 E-value=39 Score=32.21 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=27.6
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++|+++|+|.+.-+|+.++..|+.++..|
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V 38 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARV 38 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEE
Confidence 689999999999999999999999988754
No 186
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.46 E-value=34 Score=32.91 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=28.2
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||.++|+|.|.-+|+.++..|+.+++.|
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V 32 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATL 32 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEE
Confidence 4689999999999999999999999999854
No 187
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=34.39 E-value=38 Score=32.44 Aligned_cols=31 Identities=35% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|-+.-+|+-++..|+.+++.|
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v 35 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARV 35 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 3679999999999999999999999998854
No 188
>PRK07825 short chain dehydrogenase; Provisional
Probab=33.95 E-value=38 Score=32.86 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=27.5
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.|.-+|+-++..|+.+++.|
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v 32 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARV 32 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 4679999999999999999999999988743
No 189
>PRK09242 tropinone reductase; Provisional
Probab=33.90 E-value=37 Score=32.53 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+.-+|+-++..|++++++|
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v 36 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADV 36 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEE
Confidence 5789999999999999999999999998854
No 190
>PRK09186 flagellin modification protein A; Provisional
Probab=33.89 E-value=39 Score=32.16 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+.-+|+.++..|..+++.|
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v 31 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIV 31 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999998754
No 191
>KOG0725|consensus
Probab=33.83 E-value=39 Score=34.12 Aligned_cols=31 Identities=45% Similarity=0.596 Sum_probs=28.7
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.+.|+|.|.=+|+.++.+|+..++.|
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v 35 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKV 35 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 5899999999999999999999999999944
No 192
>PRK06172 short chain dehydrogenase; Provisional
Probab=33.69 E-value=40 Score=32.17 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v 34 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKV 34 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999988754
No 193
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.69 E-value=41 Score=31.73 Aligned_cols=31 Identities=42% Similarity=0.498 Sum_probs=27.7
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+.-+|.-++..|.+++..|
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V 32 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARV 32 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 3678999999999999999999999998754
No 194
>PRK12746 short chain dehydrogenase; Provisional
Probab=33.65 E-value=40 Score=32.12 Aligned_cols=30 Identities=50% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++||.++|+|-+.-+|.-++..|..+++.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v 33 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALV 33 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999988744
No 195
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.64 E-value=1.1e+02 Score=28.82 Aligned_cols=53 Identities=8% Similarity=-0.084 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCC
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLP 169 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlP 169 (477)
++-.....+...+.|++.|..+. .+....+. .+++.++.+ - ...||||++...
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~-~~~~~i~~~--~-~~~vdgiii~~~ 63 (266)
T cd06278 11 NPFYSELLEALSRALQARGYQPL-LINTDDDE-DLDAALRQL--L-QYRVDGVIVTSG 63 (266)
T ss_pred CchHHHHHHHHHHHHHHCCCeEE-EEcCCCCH-HHHHHHHHH--H-HcCCCEEEEecC
Confidence 44555566778899999999988 66544333 233666665 2 457999999643
No 196
>PRK09072 short chain dehydrogenase; Provisional
Probab=33.51 E-value=37 Score=32.74 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.|+.++|+|.+.-+|.-++..|+.+|+.|
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V 32 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARL 32 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 3578999999999999999999999998854
No 197
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.37 E-value=40 Score=31.91 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=27.2
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.+|.++|+|.+.-+|+-++..|+.++++|
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~v 32 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARV 32 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeE
Confidence 578999999999999999999999998754
No 198
>PRK06841 short chain dehydrogenase; Provisional
Probab=33.32 E-value=42 Score=32.00 Aligned_cols=31 Identities=45% Similarity=0.589 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|.-++..|+.+++.|
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~V 42 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARV 42 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999998854
No 199
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.24 E-value=40 Score=31.71 Aligned_cols=30 Identities=43% Similarity=0.614 Sum_probs=27.0
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.+|.++|+|.+..+|..++..|+.+++.|
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V 33 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEV 33 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999988744
No 200
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.20 E-value=99 Score=29.13 Aligned_cols=60 Identities=8% Similarity=-0.063 Sum_probs=39.1
Q ss_pred EEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcC
Q psy4615 105 TAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 105 aiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVql 168 (477)
++|.-+ +++.-..+++...+.|++.|.++. ......+.+.+.+.++.+ . ..++|||++.-
T Consensus 3 g~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~l--~-~~~vdgiii~~ 63 (268)
T cd01575 3 AVLVPSLSNSVFADVLQGISDVLEAAGYQLL-LGNTGYSPEREEELLRTL--L-SRRPAGLILTG 63 (268)
T ss_pred EEEeCCCcchhHHHHHHHHHHHHHHcCCEEE-EecCCCCchhHHHHHHHH--H-HcCCCEEEEeC
Confidence 444432 455666677889999999999888 654433331222667766 3 34699999973
No 201
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=33.16 E-value=40 Score=32.48 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+++.+
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~v 34 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKV 34 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999998743
No 202
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.03 E-value=40 Score=31.67 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=27.7
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|.-++..|+++++.|
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v 32 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQV 32 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEE
Confidence 4689999999999999999999999988743
No 203
>PRK06701 short chain dehydrogenase; Provisional
Probab=32.84 E-value=41 Score=33.49 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=28.8
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
-.+.||.++|+|.+.-+|.-++..|+.+++.|
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V 73 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADI 73 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEE
Confidence 46789999999999999999999999998854
No 204
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=32.73 E-value=43 Score=32.42 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=29.3
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
..++.||.++|+|-+.-+|+-++..|+.+++.+
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~v 37 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATI 37 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 346789999999999999999999999998854
No 205
>PRK05872 short chain dehydrogenase; Provisional
Probab=32.66 E-value=40 Score=33.61 Aligned_cols=32 Identities=38% Similarity=0.547 Sum_probs=28.5
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+++||.++|+|.+.-+|+-++..|+.+|+.|
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V 36 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKL 36 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 35789999999999999999999999998743
No 206
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.30 E-value=1.1e+02 Score=28.93 Aligned_cols=55 Identities=9% Similarity=-0.125 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLP 169 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlP 169 (477)
+++-...+.+...+.|++.|+++. ...-.... .+.+.+..+ -....+|||++.-+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~--~~~~~~dgiii~~~ 69 (270)
T cd06294 15 QNPFFIEVLRGISAVANENGYDIS-LATGKNEE-ELLEEVKKM--IQQKRVDGFILLYS 69 (270)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEE-EecCCCcH-HHHHHHHHH--HHHcCcCEEEEecC
Confidence 455566777888899999999887 54322222 222444443 22345899999743
No 207
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.13 E-value=42 Score=31.78 Aligned_cols=30 Identities=40% Similarity=0.606 Sum_probs=27.0
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++||+++|+|-|.-+|+-++..|+.++..|
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v 31 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKV 31 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeE
Confidence 578999999999999999999999988754
No 208
>PLN00198 anthocyanidin reductase; Provisional
Probab=32.09 E-value=33 Score=34.64 Aligned_cols=32 Identities=28% Similarity=0.220 Sum_probs=27.4
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.|++||+++|+|.+..+|+-|+..|..++.+|
T Consensus 5 ~~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V 36 (338)
T PLN00198 5 TPTGKKTACVIGGTGFLASLLIKLLLQKGYAV 36 (338)
T ss_pred cCCCCCeEEEECCchHHHHHHHHHHHHCCCEE
Confidence 36789999999999999999999998887643
No 209
>PRK07063 short chain dehydrogenase; Provisional
Probab=32.06 E-value=43 Score=32.16 Aligned_cols=31 Identities=35% Similarity=0.533 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~v 34 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAV 34 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 3679999999999999999999999998854
No 210
>PRK05875 short chain dehydrogenase; Provisional
Probab=31.83 E-value=40 Score=32.68 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++++|+++|+|-+.-+|..++..|.++++.|
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V 34 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAV 34 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeE
Confidence 4689999999999999999999999998854
No 211
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.81 E-value=2.1e+02 Score=25.52 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcC
Q psy4615 89 DEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130 (477)
Q Consensus 89 ~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vG 130 (477)
+.++++++. +..|.+++|-.|.|.. .|.++..+..+.++
T Consensus 39 ~~l~~~~~~-~~~~d~vvi~lGtNd~--~~~~nl~~ii~~~~ 77 (150)
T cd01840 39 DLIRQLKDS-GKLRKTVVIGLGTNGP--FTKDQLDELLDALG 77 (150)
T ss_pred HHHHHHHHc-CCCCCeEEEEecCCCC--CCHHHHHHHHHHcC
Confidence 444444443 3578999999999876 46777777777776
No 212
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=31.75 E-value=1.8e+02 Score=29.62 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=67.2
Q ss_pred HHHHHHHcCCeeeeeEEecCC---c--ccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCC-CCCCCCCcc
Q psy4615 122 KMKSAAKVGEVNALGVLYHLT---L--FGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPH-KDVDGFNIV 195 (477)
Q Consensus 122 k~k~a~~vGI~~~~~~~lp~~---~--~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~-KDVDGl~p~ 195 (477)
-..++++.|+++. ...++-. . +..++.++.+ .+.++.|.-|-+|.-. +.-.+++.+++. +.+-..+..
T Consensus 23 hn~~f~~~gl~~~-Y~~~~v~~~~~~~~~l~~~~~~~---~~~~~~G~nVT~P~K~--~~~~~lD~l~~~A~~iGAVNTv 96 (283)
T PRK14027 23 HEAEGLAQGRATV-YRRIDTLGSRASGQDLKTLLDAA---LYLGFNGLNITHPYKQ--AVLPLLDEVSEQATQLGAVNTV 96 (283)
T ss_pred HHHHHHHcCCCeE-EEEEecccccCCHHHHHHHHHHH---HhcCCCEEEECccCHH--HHHHHhhhCCHHHHHhCCceEE
Confidence 3566889999988 6666522 1 0112556655 2347999999998532 111222222221 111111100
Q ss_pred -c--hHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 196 -N--VGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 196 -n--lg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
+ =|++ .|. =.-..|+++.|++.+.+..||+++|+|. .=.++..+.-|...+.
T Consensus 97 ~~~~~g~l-~G~----NTD~~Gf~~~L~~~~~~~~~k~vlilGa-GGaarAi~~aL~~~g~ 151 (283)
T PRK14027 97 VIDATGHT-TGH----NTDVSGFGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGV 151 (283)
T ss_pred EECCCCcE-EEE----cCCHHHHHHHHHhcCcCcCCCeEEEECC-cHHHHHHHHHHHHCCC
Confidence 0 0111 010 1245688898987666789999999995 4457888887877665
No 213
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=31.74 E-value=64 Score=34.53 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 214 GVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 214 Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++.++++.+.++.||++-|+| -..+|+.+|.+|..-|..|
T Consensus 102 ~lL~l~r~~g~~L~gktvGIIG-~G~IG~~vA~~l~a~G~~V 142 (378)
T PRK15438 102 SLLMLAERDGFSLHDRTVGIVG-VGNVGRRLQARLEALGIKT 142 (378)
T ss_pred HHHHHhccCCCCcCCCEEEEEC-cCHHHHHHHHHHHHCCCEE
Confidence 4456667778999999999999 5667999999998887754
No 214
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=31.65 E-value=46 Score=31.06 Aligned_cols=31 Identities=45% Similarity=0.547 Sum_probs=27.6
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+++|.++|+|-+.-+|.-++..|..+++.|
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v 32 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANV 32 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 4678999999999999999999999988743
No 215
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.43 E-value=1.6e+02 Score=28.03 Aligned_cols=59 Identities=8% Similarity=-0.020 Sum_probs=38.8
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
+++|.-. +++-.....+...++|++.|.+.. ......+. ..+ +.++.+ . ..+++||++.
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy~v~-~~~~~~~~-~~~~~~i~~~--~-~~~~dgiii~ 62 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGLSLV-LCATRNRP-ERELTYLRWL--D-TNHVDGLIFV 62 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCCEEE-EEeCCCCH-HHHHHHHHHH--H-HCCCCEEEEe
Confidence 3444432 345556677889999999999888 66544444 223 666665 3 3359999996
No 216
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.37 E-value=42 Score=32.47 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=26.9
Q ss_pred CCCCeEEEECCC--CCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRS--KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS--~~VGkPLA~lL~~~~a~v 255 (477)
++||.++|+|.| .=+|+-+|..|+.+|+.|
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~V 36 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATV 36 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEE
Confidence 689999999988 579999999999999854
No 217
>PRK06057 short chain dehydrogenase; Provisional
Probab=31.37 E-value=43 Score=32.09 Aligned_cols=31 Identities=35% Similarity=0.529 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||+++|+|.+.-+|+-++..|+++++.|
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v 34 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATV 34 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEE
Confidence 3689999999999999999999999998754
No 218
>PRK08264 short chain dehydrogenase; Validated
Probab=31.30 E-value=44 Score=31.48 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=27.4
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC-Cc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA-GV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a-~v 255 (477)
.+.+|.++|+|.+.-+|+-++..|.++++ .|
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V 34 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKV 34 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccE
Confidence 35789999999999999999999999887 44
No 219
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=31.26 E-value=6.1e+02 Score=26.21 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCeeeeeEEecCCc-----ccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCCCCc
Q psy4615 120 NNKMKSAAKVGEVNALGVLYHLTL-----FGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNI 194 (477)
Q Consensus 120 ~~k~k~a~~vGI~~~~~~~lp~~~-----~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDGl~p 194 (477)
-+=..++.++|.++. .+.- .++ |+.++.++-| +. -+|+|++-.| .+-..+.+.+.. +++-
T Consensus 55 ~SFe~A~~~LGg~~i-~l~~-~~ss~~kgEsl~Dt~~vl--s~--y~D~iv~R~~--~~~~~~~~a~~~-------~vPV 119 (304)
T TIGR00658 55 VSFEVAAYQLGGHPL-YLNP-NDLQLGRGESIKDTARVL--SR--YVDGIMARVY--KHEDVEELAKYA-------SVPV 119 (304)
T ss_pred HHHHHHHHHcCCCEE-EeCC-ccccCCCCCCHHHHHHHH--HH--hCCEEEEECC--ChHHHHHHHHhC-------CCCE
Confidence 345789999999887 5532 222 0111455544 33 2789999865 333333443332 2455
Q ss_pred cchHHhhcCCCCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 195 VNVGRFCLDLKTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 195 ~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+|. |.....||=+.+ ++.+.++.| .++|.++.++|...-|-.-++.+|..-|+++
T Consensus 120 INa-----~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v 175 (304)
T TIGR00658 120 ING-----LTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDV 175 (304)
T ss_pred EEC-----CCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEE
Confidence 664 335688998886 677777777 4899999999985556667777777666643
No 220
>PRK08703 short chain dehydrogenase; Provisional
Probab=31.25 E-value=49 Score=31.33 Aligned_cols=31 Identities=32% Similarity=0.381 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||+++|+|-+.-+|+-++..|++++..|
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V 33 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATV 33 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999988744
No 221
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=31.20 E-value=45 Score=32.06 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+.++..|+++|+.|
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~v 37 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDI 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999998854
No 222
>PRK12744 short chain dehydrogenase; Provisional
Probab=31.06 E-value=46 Score=31.99 Aligned_cols=30 Identities=40% Similarity=0.447 Sum_probs=27.3
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
.++||.++|+|-+.-+|+.++..|+.+++.
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~ 34 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAK 34 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCc
Confidence 467999999999999999999999998875
No 223
>PRK12937 short chain dehydrogenase; Provisional
Probab=31.06 E-value=46 Score=31.34 Aligned_cols=31 Identities=42% Similarity=0.508 Sum_probs=27.7
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|-+.-+|+-++..|.++++.+
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v 32 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAV 32 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 3678999999999999999999999998743
No 224
>PRK08265 short chain dehydrogenase; Provisional
Probab=31.04 E-value=45 Score=32.28 Aligned_cols=31 Identities=39% Similarity=0.461 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V 33 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARV 33 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 4679999999999999999999999998854
No 225
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.93 E-value=42 Score=31.50 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=27.7
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||+++|+|-+.-+|.-++..|.++++.|
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V 32 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQV 32 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 3679999999999999999999999998854
No 226
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=30.83 E-value=40 Score=34.47 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=28.5
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
.+-+++|+++|+|.+..+|+.|+..|..++.+
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~ 41 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQT 41 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCCE
Confidence 45678999999999999999999999988763
No 227
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.81 E-value=44 Score=34.14 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=28.5
Q ss_pred CCCCCCeEEEECCC--CCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRS--KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS--~~VGkPLA~lL~~~~a~v 255 (477)
++++||.++|+|-+ .=+|+-+|..|+.+|+.|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~V 37 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATI 37 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEE
Confidence 57899999999974 788999999999999955
No 228
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=30.62 E-value=49 Score=33.94 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=29.3
Q ss_pred CCCCCCCeEEEECC--CCCcchHHHHHhhhCCCCc
Q psy4615 223 KVETFGKNAVVCGR--SKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 223 gi~l~Gk~vvViGr--S~~VGkPLA~lL~~~~a~v 255 (477)
+.+++||.++|+|. |.=+|+-+|..|+.+|+.|
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~V 38 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEI 38 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEE
Confidence 45689999999999 7889999999999999855
No 229
>PRK06500 short chain dehydrogenase; Provisional
Probab=30.49 E-value=47 Score=31.38 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=27.2
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v 33 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999998743
No 230
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.44 E-value=67 Score=34.56 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHh--CCCCCCCeEEEECC----------------CCCcchHHHHHhhhCCCCc
Q psy4615 210 CTPLGVQELIRRY--KVETFGKNAVVCGR----------------SKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 210 cTa~Av~~Lle~~--gi~l~Gk~vvViGr----------------S~~VGkPLA~lL~~~~a~v 255 (477)
..|..+++.+++. .-+++||+++|+|. |...|..+|..|..+|++|
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V 231 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADV 231 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEE
Confidence 3455555544432 23689999999998 6778999999999999965
No 231
>PRK07035 short chain dehydrogenase; Provisional
Probab=30.36 E-value=47 Score=31.66 Aligned_cols=31 Identities=45% Similarity=0.608 Sum_probs=28.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|.-++..|.++++.|
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~V 35 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHV 35 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999998754
No 232
>PRK06125 short chain dehydrogenase; Provisional
Probab=30.23 E-value=52 Score=31.64 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+++||.++|+|-+.-+|+.++..|+.+++.|
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V 34 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHL 34 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEE
Confidence 5789999999999999999999999988743
No 233
>PRK06198 short chain dehydrogenase; Provisional
Probab=30.18 E-value=48 Score=31.69 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=27.2
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
.++||.++|+|-+.-+|+.++..|..+++.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~ 32 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAA 32 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCC
Confidence 367999999999999999999999999875
No 234
>PRK06194 hypothetical protein; Provisional
Probab=30.13 E-value=46 Score=32.49 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V 33 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKL 33 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEE
Confidence 3578999999999999999999999998854
No 235
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.03 E-value=48 Score=32.28 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=27.3
Q ss_pred CCCCCeEEEECCC--CCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRS--KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS--~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+ .=+|+-++..|+.+++.|
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v 36 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKL 36 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
Confidence 5789999999976 688999999999999854
No 236
>PRK07060 short chain dehydrogenase; Provisional
Probab=29.97 E-value=51 Score=31.06 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=28.3
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++.||.++|+|-+.-+|+.++..|..+++.|
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V 36 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARV 36 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEE
Confidence 35789999999999999999999999988743
No 237
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=29.88 E-value=40 Score=33.72 Aligned_cols=62 Identities=31% Similarity=0.355 Sum_probs=44.8
Q ss_pred cccCCHHHHHH----HHHHhCCC-CCCCeEEEECCCCCcchHHHHHhhhCCC---CccccceEEccCCCCCC
Q psy4615 207 LIPCTPLGVQE----LIRRYKVE-TFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYITPVPGGVG 270 (477)
Q Consensus 207 f~PcTa~Av~~----Lle~~gi~-l~Gk~vvViGrS~~VGkPLA~lL~~~~a---~v~~~a~~iTPVpGGVG 270 (477)
-.++|+.++.. .+++.+.+ ++|++++|-| ..-||.-++..|+..++ .+.+.-+++.. |.|..
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqG-fG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~-~~Gld 75 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQG-FGNVGSHAARFLAELGAKVVAVSDSSGAIYD-PDGLD 75 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEE-SSHHHHHHHHHHHHTTEEEEEEEESSEEEEE-TTEEH
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCceEEEc-CCCch
Confidence 45778886654 45555765 9999999998 68899999999999997 34444455543 55554
No 238
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=29.81 E-value=1.2e+02 Score=28.59 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=36.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVql 168 (477)
.++-.....+...+.|++.|+.+. .+....+. ..+ +.++.+ .. ..++||++..
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~~-~~vdgiii~~ 63 (266)
T cd06282 10 ANPVFAECVQGIQEEARAAGYSLL-LATTDYDA-EREADAVETL--LR-QRVDGLILTV 63 (266)
T ss_pred CcchHHHHHHHHHHHHHHCCCEEE-EeeCCCCH-HHHHHHHHHH--Hh-cCCCEEEEec
Confidence 345556667888999999999998 65543333 222 677777 55 3799999953
No 239
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=29.78 E-value=51 Score=31.40 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=28.2
Q ss_pred HHHHHH-HHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 212 PLGVQE-LIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 212 a~Av~~-Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
...+++ +++..++.++||+++|+| =--||+.+|..|...++.|
T Consensus 6 g~S~~d~i~r~t~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V 49 (162)
T PF00670_consen 6 GQSLVDGIMRATNLMLAGKRVVVIG-YGKVGKGIARALRGLGARV 49 (162)
T ss_dssp HHHHHHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EE
T ss_pred chhHHHHHHhcCceeeCCCEEEEeC-CCcccHHHHHHHhhCCCEE
Confidence 344443 444568999999999999 4557999999999999844
No 240
>PRK05866 short chain dehydrogenase; Provisional
Probab=29.68 E-value=50 Score=33.05 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=29.3
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+..+.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~V 67 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATV 67 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEE
Confidence 456789999999999999999999999988754
No 241
>KOG1201|consensus
Probab=29.65 E-value=45 Score=34.81 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
.+++|+.|+|+|.+.-+|+-+|..|++|++
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~ 63 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGA 63 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCC
Confidence 478999999999999999999999999998
No 242
>PRK08226 short chain dehydrogenase; Provisional
Probab=29.51 E-value=47 Score=31.90 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=27.4
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|-+.-+|+-++..|..+++.|
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~V 33 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANL 33 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999998854
No 243
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=29.49 E-value=36 Score=31.60 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++++||+++|+| ..-||.-++..|...+++|
T Consensus 9 l~l~~~~vlVvG-GG~va~rka~~Ll~~ga~V 39 (157)
T PRK06719 9 FNLHNKVVVIIG-GGKIAYRKASGLKDTGAFV 39 (157)
T ss_pred EEcCCCEEEEEC-CCHHHHHHHHHHHhCCCEE
Confidence 578999999999 6667888888998888855
No 244
>KOG3135|consensus
Probab=29.33 E-value=1.4e+02 Score=29.15 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=38.7
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccc
Q psy4615 102 PTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPM 153 (477)
Q Consensus 102 P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L 153 (477)
|+++||...-+-.-..-.+..+|-.+.+|-+.+ ++++|+.. ++| .++++
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a~geA~-i~qVpEtl-~~e-vl~km 50 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESAGGEAT-IYQVPETL-SEE-VLEKM 50 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhccCCeeE-EEEccccc-CHH-HHHHh
Confidence 678888876666666678888899999999999 99999998 554 44454
No 245
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=29.28 E-value=4.3e+02 Score=29.43 Aligned_cols=129 Identities=18% Similarity=0.152 Sum_probs=74.5
Q ss_pred EEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCC----CCc---H-HH
Q psy4615 107 ILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPE----HMV---E-RA 178 (477)
Q Consensus 107 I~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~----~ld---~-~~ 178 (477)
-.+|+.-+-...=..--.+.+++|+++. ...++.+ ..++.++.+ .+.++.|+-|-+|.-. ++| + .+
T Consensus 256 ~liG~Pi~hS~SP~ihn~~f~~~gl~~~-Y~~~~v~--~l~~~~~~l---~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~ 329 (529)
T PLN02520 256 GIIGKPVGHSKSPILHNEAFKSVGFNGV-YVHLLVD--DLAKFLQTY---SSPDFAGFSCTIPHKEDALKCCDEVDPIAK 329 (529)
T ss_pred EEEcCCcccccCHHHHHHHHHHCCCCcE-EEEeehh--hHHHHHHHH---hhCCCCEEEECcCCHHHHHHHhccCCHHHH
Confidence 3667643222222334567889999988 7766542 223555555 3357999999999632 122 1 11
Q ss_pred HHhhcCCCC-C-CCCCCccchHHhhcCCCCcccCCHHHHHHHHHH----------hCCCCCCCeEEEECCCCCcchHHHH
Q psy4615 179 VCNAVAPHK-D-VDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRR----------YKVETFGKNAVVCGRSKNVGMPIAM 246 (477)
Q Consensus 179 l~~aI~p~K-D-VDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~----------~gi~l~Gk~vvViGrS~~VGkPLA~ 246 (477)
...+++.-. + -| |++ .|. =--..|+++.|++ .+.++.||+++|+|.+ =.|+..+.
T Consensus 330 ~iGAVNTvv~~~~~-------g~l-~G~----NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaG-GagrAia~ 396 (529)
T PLN02520 330 SIGAINTIIRRPSD-------GKL-VGY----NTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAG-GAGKALAY 396 (529)
T ss_pred HhCCceEEEEeCCC-------CEE-EEE----cccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCc-HHHHHHHH
Confidence 222222110 0 01 111 111 1245577777765 2567899999999975 66888999
Q ss_pred HhhhCCCC
Q psy4615 247 LLHADGAG 254 (477)
Q Consensus 247 lL~~~~a~ 254 (477)
.|+.+|+.
T Consensus 397 ~L~~~G~~ 404 (529)
T PLN02520 397 GAKEKGAR 404 (529)
T ss_pred HHHHCCCE
Confidence 89888763
No 246
>PRK12939 short chain dehydrogenase; Provisional
Probab=29.23 E-value=52 Score=30.98 Aligned_cols=30 Identities=37% Similarity=0.514 Sum_probs=26.9
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+.-+|+.++..|.++++.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v 34 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATV 34 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEE
Confidence 578999999999999999999999988743
No 247
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=28.98 E-value=48 Score=31.92 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=27.3
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+.-+|.-++..|+.+|+.|
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V 33 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARV 33 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 579999999999999999999999998854
No 248
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=28.91 E-value=51 Score=31.57 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=27.4
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.+|.++|+|-+.-+|.-++..|+.+++.|
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v 33 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARV 33 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEE
Confidence 678999999999999999999999998854
No 249
>PRK08589 short chain dehydrogenase; Validated
Probab=28.88 E-value=51 Score=32.19 Aligned_cols=31 Identities=35% Similarity=0.417 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|-+.-+|+.++..|+.+++.|
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~v 33 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYV 33 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 3679999999999999999999999998854
No 250
>PLN02253 xanthoxin dehydrogenase
Probab=28.71 E-value=52 Score=32.03 Aligned_cols=31 Identities=39% Similarity=0.611 Sum_probs=28.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v 45 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKV 45 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEE
Confidence 4679999999999999999999999998854
No 251
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=28.61 E-value=47 Score=33.78 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=25.2
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||+++|+|.+..+|+-++..|.+++.+|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V 31 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEV 31 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEE
Confidence 368899999999999999999998887643
No 252
>PRK06114 short chain dehydrogenase; Provisional
Probab=28.13 E-value=55 Score=31.43 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=28.2
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|-+.-+|+-++..|..++++|
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v 35 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADV 35 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999998754
No 253
>PRK12747 short chain dehydrogenase; Provisional
Probab=28.10 E-value=57 Score=31.16 Aligned_cols=30 Identities=47% Similarity=0.535 Sum_probs=27.0
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|-+.-+|.-++..|+.+++.|
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v 31 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALV 31 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeE
Confidence 468999999999999999999999998754
No 254
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.10 E-value=54 Score=30.54 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=26.5
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+..|+++|+|.+..+|+.++..|.+++..+
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v 33 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 457899999999999999999999988753
No 255
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=28.04 E-value=1.3e+02 Score=28.38 Aligned_cols=59 Identities=12% Similarity=-0.097 Sum_probs=38.0
Q ss_pred EEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEc
Q psy4615 105 TAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 105 aiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVq 167 (477)
++|.-+ +++-.....+...+.+++.|..+. ......+.+.+.+.++.+ - +.++|||++.
T Consensus 3 ~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~i~~l--~-~~~vdgiii~ 62 (268)
T cd06298 3 GVIIPDITNSYFAELARGIDDIATMYKYNII-LSNSDNDKEKELKVLNNL--L-AKQVDGIIFM 62 (268)
T ss_pred EEEECCCcchHHHHHHHHHHHHHHHcCCeEE-EEeCCCCHHHHHHHHHHH--H-HhcCCEEEEe
Confidence 444333 355666667788889999999888 654333331122667766 3 4579999995
No 256
>TIGR00035 asp_race aspartate racemase.
Probab=27.99 E-value=1.5e+02 Score=28.94 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCCCccHhHHHHHHHHHHHHHHHHHHhcccCchhhhhhhhc---cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEE
Q psy4615 29 VPGGVGPMTVAMLMKNTILAAKHAVIYNVLQPNAILHKKAN---KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLT 105 (477)
Q Consensus 29 VPGGVGp~T~a~L~~N~v~aa~~~~~~~~~~~~~~l~~~~~---ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~La 105 (477)
+-||+||++++-+++-+++...... .|-+.|.-.++.... ..-++++.. +.+.+.+.+.++.|.+.+ +.+.
T Consensus 6 iiGGmgp~at~~~~~~i~~~~~a~~-d~~~~~~i~~~~~~~~dr~~~~~~~~~--~~~~~~l~~~~~~L~~~g---~d~i 79 (229)
T TIGR00035 6 ILGGMGPLATAELFRRINEKTKAKR-DQEHPAEVLFNNPNIPDRTAYILGRGE--DRPRPILIDIAVKLENAG---ADFI 79 (229)
T ss_pred EecCcCHHHHHHHHHHHHHHhHHhc-CCCCCceeeeeCCCHHHHHHHHhcCCc--chHHHHHHHHHHHHHHcC---CCEE
Confidence 3599999999999999998865432 233333333322211 123343221 135556666666665443 3344
Q ss_pred EEEeCCChhhHHH
Q psy4615 106 AILVGNDSASSTY 118 (477)
Q Consensus 106 iI~vGdd~aS~~Y 118 (477)
+| .-|.++..|
T Consensus 80 vi--aCNTah~~~ 90 (229)
T TIGR00035 80 IM--PCNTAHKFA 90 (229)
T ss_pred EE--CCccHHHHH
Confidence 43 444454444
No 257
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=27.94 E-value=30 Score=29.51 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++++||+++|+| +.-|+.-.+..|...++.+
T Consensus 3 l~l~~~~vlVvG-gG~va~~k~~~Ll~~gA~v 33 (103)
T PF13241_consen 3 LDLKGKRVLVVG-GGPVAARKARLLLEAGAKV 33 (103)
T ss_dssp E--TT-EEEEEE-ESHHHHHHHHHHCCCTBEE
T ss_pred EEcCCCEEEEEC-CCHHHHHHHHHHHhCCCEE
Confidence 468999999999 5666888888888888754
No 258
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=27.88 E-value=55 Score=31.37 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|-+.-+|+-++..|..+++.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~v 38 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASV 38 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeE
Confidence 3679999999999999999999999998753
No 259
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.80 E-value=1.7e+02 Score=27.67 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=35.1
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVql 168 (477)
+++--....+...+.|++.|..+. ...-..+. ..+ +.++.+ ....+||||+..
T Consensus 10 ~~~~~~~~~~gi~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~~l---~~~~~dgiii~~ 63 (265)
T cd06285 10 TDTVMATMYEGIEEAAAERGYSTF-VANTGDNP-DAQRRAIEML---LDRRVDGLILGD 63 (265)
T ss_pred CCccHHHHHHHHHHHHHHCCCEEE-EEeCCCCH-HHHHHHHHHH---HHcCCCEEEEec
Confidence 355556667889999999999877 54433333 222 666665 234689999964
No 260
>PRK07806 short chain dehydrogenase; Provisional
Probab=27.76 E-value=56 Score=30.98 Aligned_cols=30 Identities=40% Similarity=0.555 Sum_probs=27.1
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||+++|+|.+.-+|+-++..|..++.+|
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V 33 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHV 33 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEE
Confidence 578999999999999999999999988754
No 261
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.74 E-value=52 Score=32.46 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=26.7
Q ss_pred CCCCeEEEECCCC--CcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSK--NVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~--~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|.+. =+|+-+|..|+.+++.|
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V 36 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAEL 36 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEE
Confidence 6799999999875 78999999999999854
No 262
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=27.63 E-value=7.5e+02 Score=26.11 Aligned_cols=128 Identities=9% Similarity=-0.002 Sum_probs=79.8
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccH-------HhhhccccCCCCCCccEEEEcCCCCCCCc
Q psy4615 103 TLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGR-------SKLINPMSIPISTGVSSHISQLPLPEHMV 175 (477)
Q Consensus 103 ~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~-------e~~I~~L~~N~D~~V~GILVqlPLP~~ld 175 (477)
.++.+.. .|+.+ ---+=..++.++|..+. .+ +.+. ++ ++.++-| +. -+|+|++-.| +|-.
T Consensus 47 ~l~~lF~--epSTR-TR~SFe~A~~~LGg~~i-~l--~~~~-s~~~kgEsl~Dtarvl--s~--y~D~Iv~R~~--~~~~ 113 (336)
T PRK03515 47 NIALIFE--KDSTR-TRCSFEVAAYDQGARVT-YL--GPSG-SQIGHKESIKDTARVL--GR--MYDGIQYRGY--GQEI 113 (336)
T ss_pred EEEEEec--CCChh-HHHHHHHHHHHcCCcEE-Ee--CCcc-ccCCCCCCHHHHHHHH--HH--hCcEEEEEeC--ChHH
Confidence 3555443 23333 33345788999999887 54 3332 11 1455544 32 3789999854 4444
Q ss_pred HHHHHhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHH-HHHHHHHhCC-CCCCCeEEEECCC-CCcchHHHHHhhhCC
Q psy4615 176 ERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLG-VQELIRRYKV-ETFGKNAVVCGRS-KNVGMPIAMLLHADG 252 (477)
Q Consensus 176 ~~~l~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~A-v~~Lle~~gi-~l~Gk~vvViGrS-~~VGkPLA~lL~~~~ 252 (477)
..++.+.. +.+-+|. +.....||=+.+ ++.+.|+.|- +++|+++.++|-. +.|...+..++..-|
T Consensus 114 ~~~~a~~~-------~vPVINa-----~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g 181 (336)
T PRK03515 114 VETLAEYA-------GVPVWNG-----LTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTG 181 (336)
T ss_pred HHHHHHhC-------CCCEEEC-----CCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcC
Confidence 44443332 2455663 334688998886 6777777764 7999999999963 347777888777767
Q ss_pred CCc
Q psy4615 253 AGV 255 (477)
Q Consensus 253 a~v 255 (477)
+++
T Consensus 182 ~~v 184 (336)
T PRK03515 182 LDL 184 (336)
T ss_pred CEE
Confidence 643
No 263
>PRK05854 short chain dehydrogenase; Provisional
Probab=27.62 E-value=50 Score=33.36 Aligned_cols=31 Identities=45% Similarity=0.584 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+|+.|
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~V 41 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEV 41 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999998754
No 264
>PRK06197 short chain dehydrogenase; Provisional
Probab=27.60 E-value=52 Score=32.76 Aligned_cols=31 Identities=39% Similarity=0.515 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~v 43 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHV 43 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEE
Confidence 4689999999999999999999999998743
No 265
>PRK06182 short chain dehydrogenase; Validated
Probab=27.48 E-value=52 Score=31.94 Aligned_cols=29 Identities=38% Similarity=0.378 Sum_probs=26.2
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+|.++|+|.+.-+|+.++..|+.+++.|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V 30 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTV 30 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 57999999999999999999999988754
No 266
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=27.40 E-value=86 Score=30.01 Aligned_cols=52 Identities=13% Similarity=-0.033 Sum_probs=37.2
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
+|+-.....+...+.|++.|+++. ...-..+. .++ +.|+.+ .. .+++||++.
T Consensus 10 ~~~~~~~~~~~~~~~a~~~g~~~~-~~~~~~~~-~~~~~~i~~l--~~-~~vdgiIi~ 62 (273)
T cd06309 10 ESPWRTAETKSIKDAAEKRGFDLK-FADAQQKQ-ENQISAIRSF--IA-QGVDVIILA 62 (273)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEE-EeCCCCCH-HHHHHHHHHH--HH-cCCCEEEEc
Confidence 466677788999999999999998 65433333 222 677776 33 369999995
No 267
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.39 E-value=1.5e+02 Score=27.80 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLP 169 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlP 169 (477)
.++-...+.+...++|++.|.+.. ...-..+. ..+ +.|+.+ . +.++|||++.-.
T Consensus 10 ~~~~~~~~~~g~~~~a~~~g~~~~-~~~~~~~~-~~~~~~i~~~--~-~~~vdgiii~~~ 64 (268)
T cd06289 10 TNPFFAELAAGLEEVLEEAGYTVF-LANSGEDV-ERQEQLLSTM--L-EHGVAGIILCPA 64 (268)
T ss_pred CcchHHHHHHHHHHHHHHcCCeEE-EecCCCCh-HHHHHHHHHH--H-HcCCCEEEEeCC
Confidence 345556667888899999998776 44322233 222 677776 4 346999999743
No 268
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.27 E-value=61 Score=30.62 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=26.9
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.+++++|+|-+.-+|+-++..|+++++.+
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v 33 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLV 33 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 568999999999999999999999988753
No 269
>PRK07577 short chain dehydrogenase; Provisional
Probab=27.07 E-value=61 Score=30.35 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=26.2
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.||.++|+|.+.-+|+.++..|.+++..|
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v 30 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQV 30 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEE
Confidence 57899999999999999999999998744
No 270
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=27.04 E-value=2e+02 Score=30.33 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=101.1
Q ss_pred HHHHHHHcCCeeeeeEEecCCcccHH----------hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCCC
Q psy4615 122 KMKSAAKVGEVNALGVLYHLTLFGRS----------KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDG 191 (477)
Q Consensus 122 k~k~a~~vGI~~~~~~~lp~~~~t~e----------~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVDG 191 (477)
=.-++..+|.+.. .. .++. +|- ..+..+ +|||++- -.+|.+.+++.+. .+
T Consensus 62 Feva~~qlGg~~~-~l--~~~~-~Qlgr~Esi~DTArVLsr~-------~D~I~~R--~~~~~~ve~lA~~-------s~ 121 (310)
T COG0078 62 FEVAATQLGGHAI-YL--GPGD-SQLGRGESIKDTARVLSRM-------VDAIMIR--GFSHETLEELAKY-------SG 121 (310)
T ss_pred HHHHHHHcCCCeE-Ee--CCCc-cccCCCCcHHHHHHHHHhh-------hheEEEe--cccHHHHHHHHHh-------CC
Confidence 3667888998876 33 2332 222 445555 8999986 3456555555333 23
Q ss_pred CCccchHHhhcC-CCCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCccccceEEccCCCCC
Q psy4615 192 FNIVNVGRFCLD-LKTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGV 269 (477)
Q Consensus 192 l~p~nlg~l~~g-~~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v~~~a~~iTPVpGGV 269 (477)
++-.| | ...+.||-..| ++.+-|+.|- +.|++++-+|-.+.|+.-|-..-+.-|.+++ ..+ |-|.
T Consensus 122 VPViN------gLtD~~HP~Q~LADl~Ti~E~~g~-l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~----ia~--Pk~~ 188 (310)
T COG0078 122 VPVIN------GLTDEFHPCQALADLMTIKEHFGS-LKGLKLAYVGDGNNVANSLLLAAAKLGMDVR----IAT--PKGY 188 (310)
T ss_pred CceEc------ccccccCcHHHHHHHHHHHHhcCc-ccCcEEEEEcCcchHHHHHHHHHHHhCCeEE----EEC--CCcC
Confidence 44444 2 34689999998 5666666765 9999999999999888766655555566542 234 4566
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhccCCCchhhHhhh---cccccCCCCCCCCceeEEEeecCCCCccccccc
Q psy4615 270 GPMTVAMLMKNTILAAKHAVIYNISKSNVVDDMVA---SNSILYRPGEKPDHTVVIKYVPYVGDSKRALDE 337 (477)
Q Consensus 270 Gp~T~a~L~~N~l~a~~~~~sk~iSK~~v~~~~~~---~~~~ly~~~~~~~h~v~I~Y~p~~Gd~K~a~d~ 337 (477)
.|- ...+..+++...+.-++=.+.+|..+ ..+.+|. +=--++|+.+++|++
T Consensus 189 ~p~------~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyT-----------DvWvSMGee~e~~~~ 242 (310)
T COG0078 189 EPD------PEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYT-----------DVWVSMGEEAEAEER 242 (310)
T ss_pred CcC------HHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEe-----------cCcccCcchhhhHHH
Confidence 663 23555554433322234555555554 2333343 333489999999987
No 271
>PRK07576 short chain dehydrogenase; Provisional
Probab=27.01 E-value=57 Score=31.69 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|-+.-+|..++..|+.+++.|
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V 36 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANV 36 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 4689999999999999999999999988754
No 272
>PRK07985 oxidoreductase; Provisional
Probab=26.99 E-value=61 Score=32.36 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=28.5
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+.-+|+-++..|+.+|+.|
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~V 76 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADV 76 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEE
Confidence 4789999999999999999999999998854
No 273
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=26.98 E-value=56 Score=31.76 Aligned_cols=32 Identities=34% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V 37 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKV 37 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 35789999999999999999999999998854
No 274
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.97 E-value=59 Score=30.77 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=27.1
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||+++|+|.+.-+|+.++..|+.+|+.|
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v 31 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDI 31 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 568999999999999999999999998754
No 275
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=26.94 E-value=1.5e+02 Score=28.39 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=37.4
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCC--cccHHhhhccccCCCCCCccEEEEc
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLT--LFGRSKLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~--~~t~e~~I~~L~~N~D~~V~GILVq 167 (477)
+++|.-. +++-....++...++|++.|.+.. ....+.. ...+.+.++.+ - +.+|+||++.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~l--~-~~~vdgiIi~ 64 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLGVSVD-IQAAPSEGDQQGQLSIAENM--I-NKGYKGLLFS 64 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhCCeEE-EEccCCCCCHHHHHHHHHHH--H-HhCCCEEEEC
Confidence 4445432 455556667788899999999888 6544322 20112666666 3 3369999885
No 276
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=26.94 E-value=2.2e+02 Score=28.40 Aligned_cols=59 Identities=8% Similarity=-0.031 Sum_probs=31.3
Q ss_pred HHHHHhhhhcccCCCccccccccchHHHHHhhhcCCCCCCCCchhchHHHHHHH-HHHHHHHhcCC
Q psy4615 371 ILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPGTPVVNALAQQRSC-IENILRACLSL 435 (477)
Q Consensus 371 ~l~~~~~r~~~~~~~~~~~~~~~~vl~~Ls~~fK~P~~~~g~~~~~~l~~Q~~~-l~~~~~~~~g~ 435 (477)
.+...+++.|++-+++-..-+|.-. .++.++.-|+ +++..+..++-+. ++-.++.+.+.
T Consensus 248 g~~~al~~~g~~vP~di~vigfD~~--~~~~~~~p~l----tti~~~~~~~g~~A~~~l~~~i~~~ 307 (327)
T PRK10339 248 GVLRAIHERGLNIPQDISLISVNDI--PTARFTFPPL----STVRIHSEMMGSQGVNLLYEKARDG 307 (327)
T ss_pred HHHHHHHHcCCCCCCceEEEeeCCh--hHHHhCCCCc----eeeecCHHHHHHHHHHHHHHHhccC
Confidence 3566777888875444444566543 2344555677 5555555444333 33334445443
No 277
>PRK10200 putative racemase; Provisional
Probab=26.88 E-value=1.8e+02 Score=28.70 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=49.4
Q ss_pred CCCCccHhHHHHHHHHHHHHHHHHHHhcccCchhhhhhhhc---cccccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEE
Q psy4615 29 VPGGVGPMTVAMLMKNTILAAKHAVIYNVLQPNAILHKKAN---KAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLT 105 (477)
Q Consensus 29 VPGGVGp~T~a~L~~N~v~aa~~~~~~~~~~~~~~l~~~~~---ma~ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~La 105 (477)
+-||+||+++..+++-+++...... -|.+.|.-.++.... .+-+++|.. +.....+.+.++.|.+.+ ..+.
T Consensus 6 ilGGmGp~aT~~~~~~i~~~t~a~~-d~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~l~~~~~~L~~~g---~~~i 79 (230)
T PRK10200 6 LLGGMSWESTIPYYRLINEGIKQRL-GGLHSAQLLLHSVDFHEIEECQRRGEW--DKTGDILAEAALGLQRAG---AEGI 79 (230)
T ss_pred EccCCCHHHHHHHHHHHHHHHHHHh-CCCCCCeEEEeCCChHHHHHHHHCCCc--chHHHHHHHHHHHHHHcC---CCEE
Confidence 3599999999999999988865432 233333333332222 123343332 223445555566665443 2333
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHcCCeee
Q psy4615 106 AILVGNDSASSTYVNNKMKSAAKVGEVNA 134 (477)
Q Consensus 106 iI~vGdd~aS~~Yv~~k~k~a~~vGI~~~ 134 (477)
+ +--|-++..| ...+ +++++.+.
T Consensus 80 v--iaCNTah~~~-~~l~---~~~~iPii 102 (230)
T PRK10200 80 V--LCTNTMHKVA-DAIE---SRCSLPFL 102 (230)
T ss_pred E--ECCchHHHHH-HHHH---HhCCCCEe
Confidence 3 3445555555 2222 34566554
No 278
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=26.77 E-value=60 Score=35.56 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCC
Q psy4615 116 STYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKD 188 (477)
Q Consensus 116 ~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KD 188 (477)
-.++...+..++-+|++.+ ..+.+ +. +.+++. .|.++.|++||+|=-..+.+..+...++-.++
T Consensus 175 pqt~~Vl~Tra~~~g~~i~-~~~~~-d~----~~l~~~---~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~ 238 (450)
T COG0403 175 PQTLDVLRTRAEGLGIEIE-VVDAD-DL----DDLESA---DDGDVFGVLVQYPNTFGIVEEDLRALIEAAHS 238 (450)
T ss_pred HHHHHHHHhhcccCceEEE-Eeccc-hh----hhhhhc---cccCeEEEEEecCCCCCccchhHHHHHHHHhh
Confidence 3456778899999999999 66554 22 222221 35689999999997655444444444443343
No 279
>PRK08278 short chain dehydrogenase; Provisional
Probab=26.56 E-value=58 Score=31.91 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=27.9
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V 33 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANI 33 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 4679999999999999999999999998854
No 280
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=26.39 E-value=63 Score=30.63 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=28.4
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++.+|.++|+|-+.-+|.-++..|..+++.|
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v 35 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKV 35 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 35789999999999999999999999998854
No 281
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=26.35 E-value=7.4e+02 Score=25.66 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHcCCeeeeeEEecCCc----ccHHhhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCC
Q psy4615 115 SSTYVNNKMKSAAKVGEVNALGVLYHLTL----FGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVD 190 (477)
Q Consensus 115 S~~Yv~~k~k~a~~vGI~~~~~~~lp~~~----~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVD 190 (477)
|..=--+=..+|.++|.+.. .+.-.+.. |+-++.++-| +.= ++|+|++=.| .|-...++.+..
T Consensus 56 STRTR~SFe~A~~~LGg~~i-~l~~~~~~~~kgEs~~Dta~vl--s~y-~~D~iv~R~~--~~~~~~~~a~~~------- 122 (305)
T PRK00856 56 STRTRLSFELAAKRLGADVI-NFSASTSSVSKGETLADTIRTL--SAM-GADAIVIRHP--QSGAARLLAESS------- 122 (305)
T ss_pred CcchHHHHHHHHHHcCCcEE-EeCCCcccCCCCcCHHHHHHHH--Hhc-CCCEEEEeCC--ChHHHHHHHHHC-------
Confidence 43334456889999999877 44321111 0111444444 211 2789998754 343333443331
Q ss_pred CCCccchHHhhcCC-CCcccCCHHH-HHHHHHHhCCCCCCCeEEEECCC--CCcchHHHHHhhhCCCC
Q psy4615 191 GFNIVNVGRFCLDL-KTLIPCTPLG-VQELIRRYKVETFGKNAVVCGRS--KNVGMPIAMLLHADGAG 254 (477)
Q Consensus 191 Gl~p~nlg~l~~g~-~~f~PcTa~A-v~~Lle~~gi~l~Gk~vvViGrS--~~VGkPLA~lL~~~~a~ 254 (477)
.++-+|. |. ....||=+.| ++.+.|+.| .++|++++++|-. +-|..-++.++..-+.+
T Consensus 123 ~vPVINa-----~~g~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~ 184 (305)
T PRK00856 123 DVPVINA-----GDGSHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAE 184 (305)
T ss_pred CCCEEEC-----CCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCE
Confidence 3555664 33 3688998887 778888888 6999999999864 45667777777776664
No 282
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=26.18 E-value=1.9e+02 Score=31.33 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhh
Q psy4615 212 PLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIY 291 (477)
Q Consensus 212 a~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk 291 (477)
+++++-.++..|+.+.|-+++|-| ++|-|.|.-+-|.|---+..+..+....
T Consensus 99 vkgvi~~l~~~g~~~~G~~i~i~g----------------------------nIP~GaGLSSSAAleva~~~al~~l~~~ 150 (390)
T COG0153 99 VKGVIKALQKRGYAFTGLDIVISG----------------------------NIPIGAGLSSSAALEVAVALALQRLFNL 150 (390)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEec----------------------------CCCCCCCcCchHHHHHHHHHHHHHHhCC
Confidence 346888999999999999988665 4677777777666654444444444455
Q ss_pred ccCCCchhh-------Hhhhcc-------cccCCCCCCCCceeEEEee
Q psy4615 292 NISKSNVVD-------DMVASN-------SILYRPGEKPDHTVVIKYV 325 (477)
Q Consensus 292 ~iSK~~v~~-------~~~~~~-------~~ly~~~~~~~h~v~I~Y~ 325 (477)
.++|.+++. +.+|-| -.+|+ ..+|.+.|++-
T Consensus 151 ~~~k~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G---~~~~al~ld~~ 195 (390)
T COG0153 151 PLDKAELAKIAQVAENQFVGVNCGIMDQLASAFG---KKDHALLLDCR 195 (390)
T ss_pred CCCHHHHHHHHHHHHhhccCCcCchHHHHHHHhC---CCCcEEEEEcc
Confidence 666665543 233322 23355 67888888876
No 283
>PRK12367 short chain dehydrogenase; Provisional
Probab=26.01 E-value=53 Score=32.15 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=27.8
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|.|.-+|+-++..|+.+++.|
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~V 41 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKV 41 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEE
Confidence 3579999999999999999999999998854
No 284
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=25.92 E-value=66 Score=30.21 Aligned_cols=30 Identities=47% Similarity=0.634 Sum_probs=27.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
++++|+++|+|.+.-+|+-++..|..++..
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~ 32 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAI 32 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE
Confidence 467899999999999999999999998863
No 285
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.92 E-value=3.1e+02 Score=25.77 Aligned_cols=66 Identities=9% Similarity=0.120 Sum_probs=39.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---hhhccccCCCCCCccEEEEcCCCCCCC
Q psy4615 102 PTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---KLINPMSIPISTGVSSHISQLPLPEHM 174 (477)
Q Consensus 102 P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~~I~~L~~N~D~~V~GILVqlPLP~~l 174 (477)
|+.+||.-+ .+...+.+...+.++++||.|+ ....+..- +.+ +.++++ +. ...+-||.--=+-.|+
T Consensus 1 p~V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~-~~V~saHR-~p~~l~~~~~~~--~~-~~~~viIa~AG~~a~L 69 (150)
T PF00731_consen 1 PKVAIIMGS--TSDLPIAEEAAKTLEEFGIPYE-VRVASAHR-TPERLLEFVKEY--EA-RGADVIIAVAGMSAAL 69 (150)
T ss_dssp -EEEEEESS--GGGHHHHHHHHHHHHHTT-EEE-EEE--TTT-SHHHHHHHHHHT--TT-TTESEEEEEEESS--H
T ss_pred CeEEEEeCC--HHHHHHHHHHHHHHHHcCCCEE-EEEEeccC-CHHHHHHHHHHh--cc-CCCEEEEEECCCcccc
Confidence 555655543 3556677888899999999999 77777665 544 666766 44 3456566543344444
No 286
>PRK07814 short chain dehydrogenase; Provisional
Probab=25.82 E-value=65 Score=31.17 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=28.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|-+.-+|+-++..|..+++.|
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~V 37 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADV 37 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999999998854
No 287
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.68 E-value=2.1e+02 Score=26.92 Aligned_cols=53 Identities=9% Similarity=-0.076 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCC
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLP 169 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlP 169 (477)
++-.....+...+.|++.|.... .+....+. .++ +.++.+ - ..++|||++...
T Consensus 12 ~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~-~~~~dgiii~~~ 65 (269)
T cd06288 12 TPFAVEIILGAQDAAREHGYLLL-VVNTGGDD-ELEAEAVEAL--L-DHRVDGIIYATM 65 (269)
T ss_pred CccHHHHHHHHHHHHHHCCCEEE-EEeCCCCH-HHHHHHHHHH--H-HcCCCEEEEecC
Confidence 34445556778899999998887 55544333 222 556655 2 346899999643
No 288
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.51 E-value=2e+02 Score=28.10 Aligned_cols=61 Identities=11% Similarity=-0.071 Sum_probs=39.9
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcC
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVql 168 (477)
+++|.-. +++-....++...+.|++.|+.+. .+.-..+.+++.+.|+.+ - +.+++||++.-
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~~~~~~~~~i~~~--~-~~~vdgiii~~ 63 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGAEVI-VQNANGDPAKQISQIENM--I-AKGVDVLVIAP 63 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHHH--H-HcCCCEEEEec
Confidence 4455532 355556667888999999999988 665443331122677766 3 34799999973
No 289
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=25.48 E-value=1.5e+02 Score=28.09 Aligned_cols=60 Identities=12% Similarity=-0.040 Sum_probs=38.8
Q ss_pred EEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCCC
Q psy4615 105 TAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLPL 170 (477)
Q Consensus 105 aiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlPL 170 (477)
++|.-. +++-...+.+...+.|++.|.++. .+.-..+. .++ +.|+.+ ...+++||++. |.
T Consensus 3 ~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~i~~~---~~~~~dgiii~-~~ 64 (265)
T cd06291 3 GLIVPTISNPFFSELARAVEKELYKKGYKLI-LCNSDNDP-EKEREYLEML---RQNQVDGIIAG-TH 64 (265)
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHCCCeEE-EecCCccH-HHHHHHHHHH---HHcCCCEEEEe-cC
Confidence 344432 456667778888999999998887 55444333 233 666655 23468999995 44
No 290
>PLN02240 UDP-glucose 4-epimerase
Probab=25.43 E-value=58 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||+++|+|.+..||+.++..|..++..|
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V 32 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKV 32 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 3678999999999999999999998887643
No 291
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=25.41 E-value=78 Score=34.48 Aligned_cols=45 Identities=33% Similarity=0.270 Sum_probs=37.1
Q ss_pred cCCHHHHHHHHHHh-CCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 209 PCTPLGVQELIRRY-KVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 209 PcTa~Av~~Lle~~-gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
-+|+.++++-+++. ++.+.||+++|+|-+ -+|+.++..|...++.
T Consensus 192 ~gt~~s~~~ai~rat~~~l~Gk~VlViG~G-~IG~~vA~~lr~~Ga~ 237 (425)
T PRK05476 192 YGTGESLLDGIKRATNVLIAGKVVVVAGYG-DVGKGCAQRLRGLGAR 237 (425)
T ss_pred HHHHhhhHHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHhCCCE
Confidence 45778777766665 888999999999965 5899999999988874
No 292
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=25.24 E-value=64 Score=30.69 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=27.6
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|-+.-+|.-++..|+.+++.|
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~V 39 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATV 39 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcE
Confidence 4589999999999999999999999988744
No 293
>PRK12743 oxidoreductase; Provisional
Probab=24.96 E-value=60 Score=31.20 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+|.++|+|.+.-+|..++..|+.+++.|
T Consensus 1 ~~k~vlItGas~giG~~~a~~l~~~G~~V 29 (256)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDI 29 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 36899999999999999999999998854
No 294
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=24.87 E-value=1.1e+02 Score=32.78 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=37.3
Q ss_pred ccCCHHHHHHHHHHh---CCCCCCCeEEEECCCC----------------CcchHHHHHhhhCCCCcc
Q psy4615 208 IPCTPLGVQELIRRY---KVETFGKNAVVCGRSK----------------NVGMPIAMLLHADGAGVS 256 (477)
Q Consensus 208 ~PcTa~Av~~Lle~~---gi~l~Gk~vvViGrS~----------------~VGkPLA~lL~~~~a~v~ 256 (477)
.++++.-++..+.+. +-++.||+++|+|..+ ..|..+|..|..+|++|.
T Consensus 162 ~~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~ 229 (390)
T TIGR00521 162 RLAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVT 229 (390)
T ss_pred CCCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEE
Confidence 467777665555542 2469999999999744 589999999999999653
No 295
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=24.84 E-value=1.9e+02 Score=27.62 Aligned_cols=63 Identities=10% Similarity=-0.093 Sum_probs=38.5
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHc-CCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCCCC
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKV-GEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLPLP 171 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~v-GI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlPLP 171 (477)
++++... .++-....++...+.|++. |+.+. ......+. ..+ +.++.+ - ..+++||++.-+.+
T Consensus 2 ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~-~~~~~~~~-~~~~~~i~~~--~-~~~vdgiii~~~~~ 67 (270)
T cd06308 2 IGFSQCNLADPWRAAMNDEIQREASNYPDVELI-IADAADDN-SKQVADIENF--I-RQGVDLLIISPNEA 67 (270)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhcCCcEEE-EEcCCCCH-HHHHHHHHHH--H-HhCCCEEEEecCch
Confidence 3444432 3455566678888889986 88888 65544333 223 666655 2 23689999974333
No 296
>PRK09135 pteridine reductase; Provisional
Probab=24.83 E-value=70 Score=30.04 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=26.7
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
..++.++|+|.+..+|+.++..|+.++..|
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v 33 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 467899999999999999999999988754
No 297
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.82 E-value=74 Score=30.87 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.4
Q ss_pred CCCCCCeEEEECCC--CCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRS--KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS--~~VGkPLA~lL~~~~a~v 255 (477)
.+++||.++|+|.| .=+|+-+|..|+.+++.|
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v 39 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAEL 39 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEE
Confidence 35789999999987 478999999999998854
No 298
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=24.75 E-value=3.8e+02 Score=26.68 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCCCCCcH
Q psy4615 120 NNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVE 176 (477)
Q Consensus 120 ~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP~~ld~ 176 (477)
+...+.|++.|+.+. .+ + ++.++++ ....+-.||+...+.+..++.
T Consensus 37 ~~~~~~~~~~~i~~~-~v--~------~~~l~~l--s~~~~~qGv~a~~~~~~~~~~ 82 (244)
T PRK11181 37 LPLINELEAQGIVIQ-LA--N------RQTLDEK--AEGAVHQGIIARVKPGRQLQE 82 (244)
T ss_pred HHHHHHHHHcCCcEE-Ee--C------HHHHhhh--hcCCCCceEEEEEecccccch
Confidence 444677888888777 22 1 2456777 666667798888776554433
No 299
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.75 E-value=1.2e+02 Score=29.00 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=38.0
Q ss_pred EEEEEeC--CChhhHHHHHHHHHHHHHcCCeeeeeEEecC-CcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 104 LTAILVG--NDSASSTYVNNKMKSAAKVGEVNALGVLYHL-TLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 104 LaiI~vG--dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~-~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
+++|.-. +++--...++...++|++.|+.+. .+.... +. .++ +.++.+ .. ..++||++.
T Consensus 2 i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v~-~~~~~~~~~-~~~~~~i~~l--~~-~~vdgiii~ 64 (271)
T cd06312 2 IAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDVE-YRGPETFDV-ADMARLIEAA--IA-AKPDGIVVT 64 (271)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHHhCCEEE-EECCCCCCH-HHHHHHHHHH--HH-hCCCEEEEe
Confidence 4455533 244445556788899999999988 554443 33 222 677776 33 379999995
No 300
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=24.74 E-value=3e+02 Score=27.41 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHH---HHHHHHcCCeeeeeEEecCCcccHH---hhhccccCCC
Q psy4615 84 LEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNK---MKSAAKVGEVNALGVLYHLTLFGRS---KLINPMSIPI 157 (477)
Q Consensus 84 ~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k---~k~a~~vGI~~~~~~~lp~~~~t~e---~~I~~L~~N~ 157 (477)
.+-.++-.+.|.++|.++| |..++.+..+....+.. .+++++.|+.......+..+. +.+ +.++++ +..
T Consensus 103 ~~a~~~a~~~Li~~Gh~~~---I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~-~~~~g~~~~~~l-l~~ 177 (279)
T PF00532_consen 103 YEAGYEATEYLIKKGHRRP---IAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDF-DYESGYEAAREL-LES 177 (279)
T ss_dssp HHHHHHHHHHHHHTTCCST---EEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSS-SHHHHHHHHHHH-HHT
T ss_pred hHHHHHHHHHHHhcccCCe---EEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCC-CHHHHHHHHHHH-Hhh
Q ss_pred CCCccEEE
Q psy4615 158 STGVSSHI 165 (477)
Q Consensus 158 D~~V~GIL 165 (477)
.|++++|+
T Consensus 178 ~p~idai~ 185 (279)
T PF00532_consen 178 HPDIDAIF 185 (279)
T ss_dssp STT-SEEE
T ss_pred CCCCEEEE
No 301
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=24.72 E-value=1.9e+02 Score=27.36 Aligned_cols=51 Identities=12% Similarity=-0.004 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
++-...+.+...+.|++.|..+. ...-..+. .++ +.++.+ ... +||||++.
T Consensus 11 ~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~~~-~vdgiii~ 62 (268)
T cd06273 11 NAIFARVIQAFQETLAAHGYTLL-VASSGYDL-DREYAQARKL--LER-GVDGLALI 62 (268)
T ss_pred CchHHHHHHHHHHHHHHCCCEEE-EecCCCCH-HHHHHHHHHH--Hhc-CCCEEEEe
Confidence 55566667888999999998887 54322222 222 667776 433 69999996
No 302
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=24.70 E-value=58 Score=31.48 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=27.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+..+++++|+|.+..+|+.++..|+.++..|
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V 44 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAV 44 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEE
Confidence 4568999999999999999999999887754
No 303
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.69 E-value=1.6e+02 Score=27.86 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=36.5
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCCCC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLPLP 171 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlPLP 171 (477)
+++-....++...++|++.|+++. .+.-..+. ..+ +.++.+ -. ..+|||++..+-+
T Consensus 10 ~~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~l~~~--~~-~~vdgii~~~~~~ 66 (273)
T cd06305 10 SGDFDQAYLAGTKAEAEALGGDLR-VYDAGGDD-AKQADQIDQA--IA-QKVDAIIIQHGRA 66 (273)
T ss_pred CCcHHHHHHHHHHHHHHHcCCEEE-EECCCCCH-HHHHHHHHHH--HH-cCCCEEEEecCCh
Confidence 455556677889999999999988 54322222 112 666665 22 3699999975433
No 304
>PRK07478 short chain dehydrogenase; Provisional
Probab=24.63 E-value=72 Score=30.49 Aligned_cols=31 Identities=35% Similarity=0.512 Sum_probs=27.6
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+.||.++|+|.+.-+|.-++..|..+++.|
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v 33 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKV 33 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEE
Confidence 3579999999999999999999999998854
No 305
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.57 E-value=52 Score=34.86 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=24.1
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
+++||++.|+|.+. .|..+|..|+.+|+
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~ 29 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGA 29 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCC
Confidence 36789999999777 89999999988887
No 306
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=24.56 E-value=69 Score=30.29 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=26.8
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++||.++|+|-+.-+|+-++..|+.+++.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~v 30 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKV 30 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEE
Confidence 468999999999999999999999998743
No 307
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=24.41 E-value=1.6e+02 Score=27.52 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=36.9
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
+++|.-. +++.-..-.+...++|++.|+++. .+....+. ..+ +.++++ ... +|+|||+.
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~~~-~vdgvi~~ 62 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKELGVELI-VLDAQNDV-SKQIQQIEDL--IAQ-GVDGIIIS 62 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhcCceEE-EECCCCCH-HHHHHHHHHH--HHc-CCCEEEEe
Confidence 4455533 234444445677788999999988 66554443 222 666666 333 79999986
No 308
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.40 E-value=67 Score=31.19 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=26.7
Q ss_pred CCCCeEEEECC--CCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGR--SKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGr--S~~VGkPLA~lL~~~~a~v 255 (477)
+.||.++|+|. |.=+|.-+|..|+.+++.|
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v 36 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEV 36 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEE
Confidence 67999999998 7889999999999998854
No 309
>KOG2882|consensus
Probab=24.38 E-value=1.1e+02 Score=31.96 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCeeeeeEEecCCcccHH--hhhccccCCCCCCccEEEEcCCCCCCCcHHHHHhhcCCCCCCC
Q psy4615 121 NKMKSAAKVGEVNALGVLYHLTLFGRS--KLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVD 190 (477)
Q Consensus 121 ~k~k~a~~vGI~~~~~~~lp~~~~t~e--~~I~~L~~N~D~~V~GILVqlPLP~~ld~~~l~~aI~p~KDVD 190 (477)
...+-.++.|+++. .-..+... +.. +.+... --||+|..++|-+ -.|++..+++.|+..--|-+
T Consensus 116 gi~~eL~~aG~~~~-g~~~~~~~-~~~~~~~~~~~--~~d~~VgAVvvg~--D~hfsy~KL~kA~~yLqnP~ 181 (306)
T KOG2882|consen 116 GIREELDEAGFEYF-GGGPDGKD-TDGAKSFVLSI--GLDPDVGAVVVGY--DEHFSYPKLMKALNYLQNPG 181 (306)
T ss_pred hhhHHHHHcCceee-cCCCCccc-ccccccchhhc--CCCCCCCEEEEec--ccccCHHHHHHHHHHhCCCC
Confidence 45677889998777 44332222 211 445555 4599999999975 47999999999887766643
No 310
>PRK08303 short chain dehydrogenase; Provisional
Probab=24.36 E-value=61 Score=32.83 Aligned_cols=31 Identities=42% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+.=+|+.++..|+.+|+.|
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~V 35 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATV 35 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 4689999999999999999999999998854
No 311
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=24.31 E-value=1.4e+02 Score=28.28 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=39.5
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH---hhhccccCCCCCCccEEEEcCCCCCCCc
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS---KLINPMSIPISTGVSSHISQLPLPEHMV 175 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e---~~I~~L~~N~D~~V~GILVqlPLP~~ld 175 (477)
++=-..+.+.-.++|++.|+++. .+ .+... +.+ +.++.+ -+..+|||++..+-|....
T Consensus 10 ~~~~~~~~~g~~~~a~~~g~~~~-~~-~~~~~-d~~~q~~~i~~~---i~~~~d~Iiv~~~~~~~~~ 70 (257)
T PF13407_consen 10 NPFWQQVIKGAKAAAKELGYEVE-IV-FDAQN-DPEEQIEQIEQA---ISQGVDGIIVSPVDPDSLA 70 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEE-EE-EESTT-THHHHHHHHHHH---HHTTESEEEEESSSTTTTH
T ss_pred CHHHHHHHHHHHHHHHHcCCEEE-Ee-CCCCC-CHHHHHHHHHHH---HHhcCCEEEecCCCHHHHH
Confidence 33345567888999999999999 65 33333 233 666665 2345999999977776554
No 312
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.26 E-value=72 Score=30.10 Aligned_cols=30 Identities=33% Similarity=0.635 Sum_probs=26.8
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.+|.++|+|.+.-+|+-++..|+.++..|
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~V 34 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNV 34 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEE
Confidence 568999999999999999999999988754
No 313
>PLN02572 UDP-sulfoquinovose synthase
Probab=24.23 E-value=60 Score=34.91 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=28.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+++|+++|+|.+..+|+-|+..|+.+|.+|
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V 74 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEV 74 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeE
Confidence 5789999999999999999999999988744
No 314
>PF06558 SecM: Secretion monitor precursor protein (SecM); InterPro: IPR009502 This family consists of several bacterial Secretion monitor precursor (SecM) proteins. SecM is known to regulate SecA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. The eubacterial protein secretion machinery consists of a number of soluble and membrane associated components. One critical element is SecA ATPase, which acts as a molecular motor to promote protein secretion at translocation sites that consist of SecYE, the SecA receptor, and SecG and SecDFyajC proteins, which regulate SecA membrane cycling [].; GO: 0045182 translation regulator activity
Probab=24.23 E-value=78 Score=29.88 Aligned_cols=67 Identities=24% Similarity=0.349 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhcccCCCcccc---ccccchHHHHHhhhcCCCCCCCCchhchHHHHHHHHHHHHHHhcCCCCCC
Q psy4615 368 DLIILAELSSRIQFTSPTVAEY---TYFHPVLSILSYLCKAPLVPPGTPVVNALAQQRSCIENILRACLSLPPEN 439 (477)
Q Consensus 368 DL~~l~~~~~r~~~~~~~~~~~---~~~~~vl~~Ls~~fK~P~~~~g~~~~~~l~~Q~~~l~~~~~~~~g~~~~~ 439 (477)
+|++|=+--.|-+|. -|| +-.+.|...|||=| +|-..+-......+..|..+|-+.|.+++-.++.-
T Consensus 40 ~L~~lq~~~Rr~sfs----VdYWhQHAiRtVIRhLSFa~-apq~~~~~~~~~pl~~q~laLLdTL~ALLt~e~~p 109 (148)
T PF06558_consen 40 NLALLQSSQRRPSFS----VDYWHQHAIRTVIRHLSFAF-APQALPVAEQSSPLQAQHLALLDTLNALLTQESQP 109 (148)
T ss_pred HHHHHHhccCCCCCC----ccHHHHHHHHHHHHHhcccc-CCcchhhhhccCchhhhHHHHHHHHHHHHhCCCCC
Confidence 344444443444442 355 44678999999999 88755444445789999999999999999777633
No 315
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=23.68 E-value=67 Score=34.59 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.8
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
..++||+++|+|.|.-+|+.++..|..+++.|
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~V 205 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKV 205 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 46789999999999999999999999988754
No 316
>PRK05993 short chain dehydrogenase; Provisional
Probab=23.45 E-value=57 Score=31.97 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=26.0
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.||.++|+|.+.-+|+.++..|+.+++.|
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~V 31 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRV 31 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999998754
No 317
>PRK06914 short chain dehydrogenase; Provisional
Probab=23.44 E-value=73 Score=30.92 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=26.1
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.||.++|+|.+..+|+.++..|+.+++.|
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V 30 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLV 30 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEE
Confidence 57899999999999999999999988754
No 318
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.40 E-value=2.4e+02 Score=27.87 Aligned_cols=53 Identities=6% Similarity=-0.111 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
++-.....+..+..|++.|..+. ...-..+. ..+ +.++.+ ++...+||||++.
T Consensus 12 ~~~~~~~~~gi~~~~~~~g~~v~-~~~~~~~~-~~~~~~i~~~-~~~~~~vdgiIi~ 65 (305)
T cd06324 12 EPFWNSVARFMQAAADDLGIELE-VLYAERDR-FLMLQQARTI-LQRPDKPDALIFT 65 (305)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEE-EEeCCCCH-HHHHHHHHHH-HHhccCCCEEEEc
Confidence 44445557778899999999988 65433333 222 666655 1221279999995
No 319
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=23.31 E-value=77 Score=29.98 Aligned_cols=31 Identities=39% Similarity=0.583 Sum_probs=27.7
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|-+.-+|.-++..|+.+++.+
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v 33 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKV 33 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEE
Confidence 3679999999999999999999999998754
No 320
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=23.17 E-value=58 Score=32.56 Aligned_cols=29 Identities=31% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
-+||.++|+|.+..+|+-++..|..+|.+
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~ 31 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYT 31 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE
Confidence 36889999999999999999999888763
No 321
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=23.05 E-value=1e+02 Score=30.34 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 212 PLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 212 a~Av~~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
-.|++.-++..+.+++|++++|+| ..-.|+..+.+|...+.+
T Consensus 9 lAG~~~al~~~g~~l~~~rvlvlG-AGgAg~aiA~~L~~~G~~ 50 (226)
T cd05311 9 LAGLLNALKLVGKKIEEVKIVING-AGAAGIAIARLLLAAGAK 50 (226)
T ss_pred HHHHHHHHHHhCCCccCCEEEEEC-chHHHHHHHHHHHHcCcC
Confidence 347888888899999999999999 566799999999887764
No 322
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=22.96 E-value=62 Score=32.31 Aligned_cols=28 Identities=32% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
.||+++|+|.+..+|+-++..|+.++.+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~ 31 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYT 31 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCE
Confidence 4788999999999999999999888764
No 323
>PRK08643 acetoin reductase; Validated
Probab=22.83 E-value=75 Score=30.32 Aligned_cols=28 Identities=39% Similarity=0.531 Sum_probs=25.6
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
||.++|+|-+.-+|.-++..|+.+++.|
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v 29 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKV 29 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEE
Confidence 7899999999999999999999998754
No 324
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=22.68 E-value=3.6e+02 Score=26.82 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHH----------------------------HHHHHHHHHHcCCeeeeeE
Q psy4615 86 ELKDEVKAWVALGHRVPTLTAILVGNDSASSTY----------------------------VNNKMKSAAKVGEVNALGV 137 (477)
Q Consensus 86 ~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Y----------------------------v~~k~k~a~~vGI~~~~~~ 137 (477)
.+++.+..|++.| .++|+=-+|...+|-.| +++..+.|+++|+.+.
T Consensus 137 ~~~~~l~~L~~~G---~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv--- 210 (256)
T COG2200 137 TALALLRQLRELG---VRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV--- 210 (256)
T ss_pred HHHHHHHHHHHCC---CeEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE---
Confidence 4555566666543 46777777776666555 7888999999999888
Q ss_pred EecCCcccHH--hhhccccCCCCCCccEEEEcCCCCC
Q psy4615 138 LYHLTLFGRS--KLINPMSIPISTGVSSHISQLPLPE 172 (477)
Q Consensus 138 ~lp~~~~t~e--~~I~~L~~N~D~~V~GILVqlPLP~ 172 (477)
.|.+||++ +.+.++ .-| -+-|.++..|+|.
T Consensus 211 --aEGVEt~~ql~~L~~~--G~~-~~QGylf~~P~~~ 242 (256)
T COG2200 211 --AEGVETEEQLDLLREL--GCD-YLQGYLFSRPLPA 242 (256)
T ss_pred --EeecCCHHHHHHHHHc--CCC-eEeeccccCCCCH
Confidence 45554444 788887 655 5789999999986
No 325
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=22.56 E-value=79 Score=29.98 Aligned_cols=30 Identities=40% Similarity=0.524 Sum_probs=27.0
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
.+.+|.++|+|.|.-+|+-+|..|+.+++.
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~ 31 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGAR 31 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCe
Confidence 467999999999999999999999988874
No 326
>PLN02686 cinnamoyl-CoA reductase
Probab=22.53 E-value=60 Score=33.71 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.7
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
.+..||+++|+|.+..+|+.++..|+.+|..|
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V 80 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSV 80 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEE
Confidence 46779999999999999999999999998754
No 327
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.53 E-value=2e+02 Score=27.19 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=36.8
Q ss_pred EEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 104 LTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 104 LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
+++|.-+ +++--....+.....|++.|..+. ...-..+. ..+ +.++.+ ...++||||+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy~~~-~~~~~~~~-~~~~~~i~~l---~~~~~dgiii~ 62 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGYSPI-IATGHWNQ-SRELEALELL---KSRRVDALILL 62 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCCEEE-EEeCCCCH-HHHHHHHHHH---HHCCCCEEEEe
Confidence 3444432 344455556777889999998887 55444343 222 666665 34468999996
No 328
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=22.52 E-value=2.7e+02 Score=26.26 Aligned_cols=52 Identities=8% Similarity=-0.086 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcC
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVql 168 (477)
++-.....+...++|++.|.+.. ...-..+. .++ +.++.+ .. .++|||++.-
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~i~~l--~~-~~vdgiii~~ 63 (269)
T cd06275 11 NPFFAEVVRGVEQYCYRQGYNLI-LCNTEGDP-ERQRSYLRML--AQ-KRVDGLLVMC 63 (269)
T ss_pred cchHHHHHHHHHHHHHHcCCEEE-EEeCCCCh-HHHHHHHHHH--HH-cCCCEEEEec
Confidence 34445556778889999998887 54433333 222 667766 33 3789999953
No 329
>PLN02583 cinnamoyl-CoA reductase
Probab=22.37 E-value=65 Score=32.17 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=26.4
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
-.+|.++|+|.+..+|+-++..|+.+|..|
T Consensus 4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V 33 (297)
T PLN02583 4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTV 33 (297)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEE
Confidence 357899999999999999999999988754
No 330
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.36 E-value=70 Score=34.36 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 219 IRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 219 le~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
|.+.+.++.||+++|+| ....|..+|..|..+|.
T Consensus 7 ~~~~~~~~~~~~v~viG-~G~~G~~~A~~L~~~G~ 40 (480)
T PRK01438 7 LTSWHSDWQGLRVVVAG-LGVSGFAAADALLELGA 40 (480)
T ss_pred hhhcccCcCCCEEEEEC-CCHHHHHHHHHHHHCCC
Confidence 34556666777777777 44467777777766665
No 331
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=22.35 E-value=54 Score=32.50 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 227 FGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 227 ~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
+||+++|+|.+..+|+-++..|++++..
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~ 30 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYT 30 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCE
Confidence 4788899998888999999888887763
No 332
>PRK06139 short chain dehydrogenase; Provisional
Probab=22.18 E-value=70 Score=32.91 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
++.||.++|+|.|.-+|+.++..|+.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~ 33 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR 33 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE
Confidence 467899999999999999999999988873
No 333
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.17 E-value=60 Score=29.04 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHhCCCCCCCeEEEECCCCCcchHHHHHhhhCCCC
Q psy4615 217 ELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAG 254 (477)
Q Consensus 217 ~Lle~~gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~ 254 (477)
||+++.--++.||+++|+|.+. .|+..+..|..+++.
T Consensus 1 ~la~~~~~~l~~~~vlviGaGg-~ar~v~~~L~~~g~~ 37 (135)
T PF01488_consen 1 ELAKKKFGDLKGKRVLVIGAGG-AARAVAAALAALGAK 37 (135)
T ss_dssp HHHCTHHSTGTTSEEEEESSSH-HHHHHHHHHHHTTSS
T ss_pred ChhHHhcCCcCCCEEEEECCHH-HHHHHHHHHHHcCCC
Confidence 3555554588999999999544 689999999888773
No 334
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=22.14 E-value=68 Score=32.58 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=20.8
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCC
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADG 252 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~ 252 (477)
+.||+++|+|.+..+|+-++..|+.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g 28 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENY 28 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhC
Confidence 467888888888888888888877654
No 335
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.10 E-value=1.8e+02 Score=27.56 Aligned_cols=52 Identities=15% Similarity=0.039 Sum_probs=35.1
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
+++-...+.+...+.|++.|+++. .+.-..+. ..+ +.++.+ .. ..++||++.
T Consensus 11 ~~~~~~~~~~g~~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~l--~~-~~vdgiii~ 63 (275)
T cd06317 11 SHSYQTTYNKAFQAAAEEDGVEVI-VLDANGDV-ARQAAQVEDL--IA-QKVDGIILW 63 (275)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEE-EEcCCcCH-HHHHHHHHHH--HH-cCCCEEEEe
Confidence 456666677888899999999888 65433333 222 666665 33 369999995
No 336
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=22.04 E-value=2.3e+02 Score=28.90 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=45.4
Q ss_pred eEEEEecCCCC-----CCcccccceeccCCCCccHhHHHHHHHHHHHHHHHHHHhcccCchhhhhhhhccccccccHHHH
Q psy4615 6 ACVIDVGITRI-----KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNVLQPNAILHKKANKAQIIDGKFIA 80 (477)
Q Consensus 6 avVIDvGin~~-----~~~~~~~~~iTPVPGGVGp~T~a~L~~N~v~aa~~~~~~~~~~~~~~l~~~~~ma~ILdGk~lA 80 (477)
.+|||+|+-.. ++-.-..++|.| |++-+.-++. ..+.+.-+-..-+|...+...+. ..+-.| +.
T Consensus 124 ~vVVD~GTA~Tid~v~~~~~~lGG~I~P---Gi~l~~~aL~-----~~aa~lp~~~~~~~~~~~gk~T~-~aiqsG--~v 192 (251)
T COG1521 124 VVVVDFGTATTIDLVDEGGRYLGGAILP---GITLSFEALF-----ARAAKLPRVEIARPESVPGKNTV-EAIQSG--VV 192 (251)
T ss_pred EEEEEcCCeEEEEEEcCCCcEeeeEecc---CHHHHHHHHH-----HHHhcCCcccccCccccCCcchH-HHHHHh--HH
Confidence 89999998653 222234567887 6665554444 22222222334455555542221 222223 11
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCCh
Q psy4615 81 NTILEELKDEVKAWVALGHRVPTLTAILVGNDS 113 (477)
Q Consensus 81 ~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~ 113 (477)
.....-++..++++++.. +....++.-|-..
T Consensus 193 ~g~~~~i~~~~~~~k~~~--~~~~~~vltGg~~ 223 (251)
T COG1521 193 YGYVGLIEGLLKEIKEEL--KGGDAVVLTGGLA 223 (251)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCeEEEeCCch
Confidence 222334444445555443 2346666666543
No 337
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.64 E-value=1.9e+02 Score=31.14 Aligned_cols=64 Identities=6% Similarity=-0.063 Sum_probs=36.9
Q ss_pred CEEEEEEeCCC---hh----hHHHHHHHHHHHHHcCCeeeeeEEecCCc-ccHH--hhhccccCCCCCCccEEEEcCCCC
Q psy4615 102 PTLTAILVGND---SA----SSTYVNNKMKSAAKVGEVNALGVLYHLTL-FGRS--KLINPMSIPISTGVSSHISQLPLP 171 (477)
Q Consensus 102 P~LaiI~vGdd---~a----S~~Yv~~k~k~a~~vGI~~~~~~~lp~~~-~t~e--~~I~~L~~N~D~~V~GILVqlPLP 171 (477)
|++.++-.+.+ +. ..-|.+...+.-++.|+++. ..+.-+ +.++ +..+++ +++ +++|||+.++-.
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vv---~~~~~~~~~~~~~~~~~~~--~~~-~~d~ii~~~~tf 74 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVV---DKPEVTGTPDEARKAAEEF--NEA-NCDGLIVWMHTF 74 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCceEE---ecCcccCCHHHHHHHHHHH--hhc-CCcEEEEccccc
Confidence 45666666665 33 34444555555555666544 333222 0222 666777 887 799999987743
No 338
>PRK07326 short chain dehydrogenase; Provisional
Probab=21.63 E-value=91 Score=29.23 Aligned_cols=30 Identities=43% Similarity=0.555 Sum_probs=26.6
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.|+.++|+|.+.-+|+-++..|+.++..|
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V 33 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKV 33 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999888744
No 339
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=21.45 E-value=1.1e+03 Score=25.75 Aligned_cols=119 Identities=8% Similarity=-0.118 Sum_probs=73.0
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHHhhhccccCCCCCCccEEEEcCCCC-C--CCcHHHH
Q psy4615 103 TLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHISQLPLP-E--HMVERAV 179 (477)
Q Consensus 103 ~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e~~I~~L~~N~D~~V~GILVqlPLP-~--~ld~~~l 179 (477)
+.+++....-..+..-++....-..+.|++++ .+.+.... .+ ++.+.+ .+-.|++|=.|-- . |-....+
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~-~~~~~~~~-~~-eI~~~i-----~~a~~~vvGsPT~~~~~~p~i~~~ 319 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVE-VINLEDAD-PS-EIVEEI-----LDAKGLVVGSPTINGGAHPPIQTA 319 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceE-EEEcccCC-HH-HHHHHH-----hhcceEEEecCcccCCCCchHHHH
Confidence 68888886666777888889999999999999 99988765 33 333333 1237999998831 1 2222222
Q ss_pred HhhcCCCCCCCCCCccchHHhhcCCCCcccCCHHHHHHHHHHhCCCCCCCeEEEEC
Q psy4615 180 CNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCG 235 (477)
Q Consensus 180 ~~aI~p~KDVDGl~p~nlg~l~~g~~~f~PcTa~Av~~Lle~~gi~l~Gk~vvViG 235 (477)
+.. +.++.+.|....+.|.-..-.+...=+.+.++..|..+..-.+.|-+
T Consensus 320 l~~------v~~~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~ 369 (388)
T COG0426 320 LGY------VLALAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKF 369 (388)
T ss_pred HHH------HHhccCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEeccceEEEe
Confidence 222 23455555544444544455555566777777766655443344333
No 340
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=21.39 E-value=61 Score=31.45 Aligned_cols=126 Identities=18% Similarity=0.165 Sum_probs=63.8
Q ss_pred CCCCCCeEEEECCCCCcchHHHHHhhhCCCCccccceEEccCCCCCChhHHHHHHHHHHHHHHHHhhhccCCCchhhHhh
Q psy4615 224 VETFGKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDMV 303 (477)
Q Consensus 224 i~l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v~~~a~~iTPVpGGVGp~T~a~L~~N~l~a~~~~~sk~iSK~~v~~~~~ 303 (477)
+++.||+++|+| ..-||.-.+..|+..++.|. .+.|-+. +- +....+..+-+.+.+.--.++ +
T Consensus 5 l~l~gk~vlVvG-gG~va~rk~~~Ll~~ga~Vt----Vvsp~~~---~~--------l~~l~~~~~i~~~~~~~~~~d-l 67 (205)
T TIGR01470 5 ANLEGRAVLVVG-GGDVALRKARLLLKAGAQLR----VIAEELE---SE--------LTLLAEQGGITWLARCFDADI-L 67 (205)
T ss_pred EEcCCCeEEEEC-cCHHHHHHHHHHHHCCCEEE----EEcCCCC---HH--------HHHHHHcCCEEEEeCCCCHHH-h
Confidence 468999999999 66778888999999988553 3444321 11 111111101111111111122 2
Q ss_pred hcccccCCCCCCC--CceeE----EEeecC-CCCccccccccceeeeeccceeEEeecccccchhhhhHH
Q psy4615 304 ASNSILYRPGEKP--DHTVV----IKYVPY-VGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLI 366 (477)
Q Consensus 304 ~~~~~ly~~~~~~--~h~v~----I~Y~p~-~Gd~K~a~d~~~~~~flG~~~~i~~~~~c~DSlLAaPLi 366 (477)
......+.-+..+ .+.+. =..+|. +-|.+.--|.|.--.+=-+..+|.+...+..-.||.=|-
T Consensus 68 ~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr 137 (205)
T TIGR01470 68 EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLR 137 (205)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHH
Confidence 2222222211111 00000 001111 234455556666667777889999998888777776544
No 341
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.34 E-value=2.8e+02 Score=26.95 Aligned_cols=55 Identities=18% Similarity=0.009 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCCCC
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLPLP 171 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlPLP 171 (477)
++-.....+...+.|++.|+++. .+.........+ +.++.+ - ..++|||++. |..
T Consensus 11 ~~~~~~~~~gi~~~a~~~g~~~~-~~~~~~~~~~~~~~~l~~~--~-~~~~dgiii~-~~~ 66 (294)
T cd06316 11 SDWSNAQVRGAKDEFAKLGIEVV-ATTDAQFDPAKQVADIETT--I-SQKPDIIISI-PVD 66 (294)
T ss_pred ChHHHHHHHHHHHHHHHcCCEEE-EecCCCCCHHHHHHHHHHH--H-HhCCCEEEEc-CCC
Confidence 44445566778899999998887 432222220112 556554 2 3458999995 544
No 342
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=21.31 E-value=2.8e+02 Score=26.05 Aligned_cols=52 Identities=10% Similarity=0.035 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcC
Q psy4615 112 DSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQL 168 (477)
Q Consensus 112 d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVql 168 (477)
++-.....+...+.|++.|.++. ...-..+. .++ +.|+++ .. .+++||++.-
T Consensus 11 ~~~~~~~~~gi~~~~~~~g~~~~-~~~~~~~~-~~~~~~i~~l--~~-~~~dgii~~~ 63 (259)
T cd01542 11 SFSTSRTVKGILAALYENGYQML-LMNTNFSI-EKEIEALELL--AR-QKVDGIILLA 63 (259)
T ss_pred cchHHHHHHHHHHHHHHCCCEEE-EEeCCCCH-HHHHHHHHHH--Hh-cCCCEEEEeC
Confidence 44445667888899999998887 54332233 222 777777 43 5799999973
No 343
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=21.30 E-value=1.9e+02 Score=26.31 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeee
Q psy4615 73 IIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNA 134 (477)
Q Consensus 73 ILdGk~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~ 134 (477)
.++|+++.. ++++++++++.+. .|...++..+|...+.-.+-.....|++.|+.-.
T Consensus 75 ~~~~~~v~~---~~L~~~L~~~~~~---~~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v 130 (141)
T PRK11267 75 FIGNDPVTD---ETMITALDALTEG---KKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKI 130 (141)
T ss_pred EECCccccH---HHHHHHHHHHHhc---CCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 357777653 4555555555432 3566677778888888889999999999999644
No 344
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=21.28 E-value=78 Score=31.82 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
..||.++|+|.+.-+|.-++..|+.+++.|
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V 33 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHV 33 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999988743
No 345
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.25 E-value=2.3e+02 Score=26.62 Aligned_cols=54 Identities=9% Similarity=-0.100 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEcCC
Q psy4615 111 NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQLP 169 (477)
Q Consensus 111 dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVqlP 169 (477)
+++--........++|++.|+... ...-..+. ..+ +.++.+ . ..+|+||++.-+
T Consensus 10 ~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~-~~~~~~~~~~--~-~~~vdgiii~~~ 64 (267)
T cd06284 10 ANPFFSEILKGIEDEAREAGYGVL-LGDTRSDP-EREQEYLDLL--R-RKQADGIILLDG 64 (267)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEE-EecCCCCh-HHHHHHHHHH--H-HcCCCEEEEecC
Confidence 455556667888999999999887 55433333 222 556655 3 336899999544
No 346
>PRK05473 hypothetical protein; Provisional
Probab=21.23 E-value=94 Score=26.82 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=30.5
Q ss_pred HHHhhcCCCCCCCCCCccc--hHHhhcCCCCcccC--CHHHHHHHHHHh
Q psy4615 178 AVCNAVAPHKDVDGFNIVN--VGRFCLDLKTLIPC--TPLGVQELIRRY 222 (477)
Q Consensus 178 ~l~~aI~p~KDVDGl~p~n--lg~l~~g~~~f~Pc--Ta~Av~~Lle~~ 222 (477)
.+.+|+.- -|.+|.| +|-|..|.|.++|+ -|+.+++-+++.
T Consensus 26 ~Vy~AL~E----KGYNPinQiVGYllSGDPaYItsh~nAR~lIrkiERD 70 (86)
T PRK05473 26 TVYDALEE----KGYNPINQIVGYLLSGDPAYIPRHNDARNLIRKLERD 70 (86)
T ss_pred HHHHHHHH----cCCChHHHHHhhhccCCCCccCCcccHHHHHHHHhHH
Confidence 34455532 3899999 68888999999997 778887766654
No 347
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.79 E-value=64 Score=37.42 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEE-ecCCcccHHhhhccccCC
Q psy4615 78 FIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVL-YHLTLFGRSKLINPMSIP 156 (477)
Q Consensus 78 ~lA~~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~-lp~~~~t~e~~I~~L~~N 156 (477)
.+++.+|.+.++-+++|++.+ .+ .+++-||++... ++.|+++||+-. .-+ +|++. .+.|++| .
T Consensus 533 ~~~D~~R~~a~~aI~~L~~~G-i~---~~mLTGDn~~~A------~~iA~~lGId~v-~AellPedK---~~~V~~l--~ 596 (713)
T COG2217 533 ALADELRPDAKEAIAALKALG-IK---VVMLTGDNRRTA------EAIAKELGIDEV-RAELLPEDK---AEIVREL--Q 596 (713)
T ss_pred EEeCCCChhHHHHHHHHHHCC-Ce---EEEEcCCCHHHH------HHHHHHcChHhh-eccCCcHHH---HHHHHHH--H
Confidence 367889999999999999776 44 677889997655 677999999444 233 34432 2778888 4
Q ss_pred CCCCccEEEEcCCCCCCCcHHH
Q psy4615 157 ISTGVSSHISQLPLPEHMVERA 178 (477)
Q Consensus 157 ~D~~V~GILVqlPLP~~ld~~~ 178 (477)
+.- +-++. ..+.+|..-
T Consensus 597 ~~g--~~Vam---VGDGINDAP 613 (713)
T COG2217 597 AEG--RKVAM---VGDGINDAP 613 (713)
T ss_pred hcC--CEEEE---EeCCchhHH
Confidence 322 22222 467786543
No 348
>PRK07791 short chain dehydrogenase; Provisional
Probab=20.78 E-value=84 Score=31.16 Aligned_cols=30 Identities=30% Similarity=0.456 Sum_probs=27.5
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
++||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~v 33 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARV 33 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEE
Confidence 579999999999999999999999998854
No 349
>PLN02427 UDP-apiose/xylose synthase
Probab=20.75 E-value=75 Score=32.89 Aligned_cols=30 Identities=10% Similarity=0.034 Sum_probs=25.1
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCC
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADG 252 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~ 252 (477)
|-+++.++++|+|.+..+|+.|+..|..++
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~ 38 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTET 38 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcC
Confidence 445677789999999999999999998774
No 350
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=20.68 E-value=80 Score=29.81 Aligned_cols=28 Identities=46% Similarity=0.761 Sum_probs=24.8
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
||.++|+|.+.-+|+.++..|..+++.|
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v 28 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANV 28 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEE
Confidence 5789999999999999999999888743
No 351
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=20.65 E-value=36 Score=35.11 Aligned_cols=35 Identities=37% Similarity=0.607 Sum_probs=22.6
Q ss_pred CCCCeEEEEecCCCCCCccc-------c-ccee-ccCCCCccHh
Q psy4615 2 VKPGACVIDVGITRIKCVSE-------V-AGYI-TPVPGGVGPM 36 (477)
Q Consensus 2 vk~gavVIDvGin~~~~~~~-------~-~~~i-TPVPGGVGp~ 36 (477)
.|||+++||+.+..-+...+ + ..++ .||-||+...
T Consensus 85 ~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 85 LKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhh
Confidence 57999999999875322111 1 1233 8999997653
No 352
>PLN02214 cinnamoyl-CoA reductase
Probab=20.59 E-value=73 Score=32.62 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.5
Q ss_pred CCCCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 226 TFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 226 l~Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
+.||+++|+|.+..+|+.++..|..++..|
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V 37 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTV 37 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEE
Confidence 468889999988899999999888777633
No 353
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=20.59 E-value=1e+02 Score=30.00 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=26.9
Q ss_pred CCCCCeEEEECCC--CCcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRS--KNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS--~~VGkPLA~lL~~~~a~v 255 (477)
++.||.++|+|.+ .=+|+-+|..|+.+++.|
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v 35 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAEL 35 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEE
Confidence 4689999999965 678999999999999854
No 354
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.48 E-value=98 Score=29.67 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.6
Q ss_pred CCCCCeEEEECCCC--CcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSK--NVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~--~VGkPLA~lL~~~~a~v 255 (477)
+++||.++|+|.+. -+|.-++..|+.+++.|
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~v 34 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDI 34 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcE
Confidence 56899999999874 59999999999998754
No 355
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=20.45 E-value=1.7e+02 Score=28.30 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=35.7
Q ss_pred EEEEEeCC--ChhhHHHHHHHHHHHHHcCCeeeeeEEecC----CcccHHhhhccccCCCCCCccEEEEc
Q psy4615 104 LTAILVGN--DSASSTYVNNKMKSAAKVGEVNALGVLYHL----TLFGRSKLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 104 LaiI~vGd--d~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~----~~~t~e~~I~~L~~N~D~~V~GILVq 167 (477)
+++|.-.. ++-....++...+.|++.|..+. ...... +.+.+.+.|+.+ .+.+||||++.
T Consensus 2 Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l---~~~~vDgiIv~ 67 (280)
T cd06303 2 IAVIYPGQQISDYWVRNIASFTARLEELNIPYE-LTQFSSRPGIDHRLQSQQLNEA---LQSKPDYLIFT 67 (280)
T ss_pred eeEEecCccHHHHHHHHHHHHHHHHHHcCCcEE-EEEeccCcccCHHHHHHHHHHH---HHcCCCEEEEc
Confidence 56665442 33334445677888999998888 543321 221222666665 24579999996
No 356
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.45 E-value=1e+02 Score=29.76 Aligned_cols=31 Identities=35% Similarity=0.451 Sum_probs=26.9
Q ss_pred CCCCCeEEEECCCC--CcchHHHHHhhhCCCCc
Q psy4615 225 ETFGKNAVVCGRSK--NVGMPIAMLLHADGAGV 255 (477)
Q Consensus 225 ~l~Gk~vvViGrS~--~VGkPLA~lL~~~~a~v 255 (477)
.++||.++|+|.+. -+|+-++..|+.+++.|
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~v 35 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADI 35 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeE
Confidence 47899999999874 68999999999999854
No 357
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=20.36 E-value=2.6e+02 Score=24.68 Aligned_cols=53 Identities=26% Similarity=0.385 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEEEEeCCChhhHHHHHHHHHHHHHcCCeeeeeEEecCCc
Q psy4615 82 TILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTL 143 (477)
Q Consensus 82 ~I~~~lk~~v~~lk~~~g~~P~LaiI~vGdd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~ 143 (477)
.|++.|++++. .-...||++|.+.....||+.-+..|.+.|.... .+.++...
T Consensus 59 ~ik~~I~~~i~--------~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii-~V~~~~~~ 111 (130)
T PF08937_consen 59 YIKRKIRERIK--------NSSVTIVLIGPNTAKSKWVNWEIEYALKKGKPII-GVYLPGLK 111 (130)
T ss_dssp THHHHHHHHHH--------TEEEEEEE--TT----HHHHHHHHHHTTT---EE-EEETT--S
T ss_pred HHHHHHHHHHh--------cCCEEEEEeCCCcccCcHHHHHHHHHHHCCCCEE-EEECCCCC
Confidence 45555555442 2358999999999999999999999999999998 88887665
No 358
>KOG1205|consensus
Probab=20.35 E-value=77 Score=32.72 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=27.2
Q ss_pred CCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 225 ETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 225 ~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
.+.||-|+|+|.|.=+|.-+|..|+.+|+
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~ 37 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGA 37 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCC
Confidence 46899999999999999999999999998
No 359
>PLN02206 UDP-glucuronate decarboxylase
Probab=20.21 E-value=73 Score=34.42 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=26.1
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
|+..++++|+|+|.+..||+-|+..|..++.
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~ 144 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGD 144 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcC
Confidence 3445689999999999999999999987776
No 360
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=20.21 E-value=64 Score=32.86 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCCCCCCeEEEECCCCCcchHHHHHhhhCCC
Q psy4615 223 KVETFGKNAVVCGRSKNVGMPIAMLLHADGA 253 (477)
Q Consensus 223 gi~l~Gk~vvViGrS~~VGkPLA~lL~~~~a 253 (477)
+-+-++++++|+|.+..+|+-++..|..++.
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~ 35 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGY 35 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 3345678888888888888888888877765
No 361
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=20.07 E-value=70 Score=30.90 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=27.8
Q ss_pred CCccccccccceeeeeccceeEEeecccccchhhhhHH
Q psy4615 329 GDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLI 366 (477)
Q Consensus 329 Gd~K~a~d~~~~~~flG~~~~i~~~~~c~DSlLAaPLi 366 (477)
-|.+.-=|.|.--.+=-+..+|.++..+..-.||.=|-
T Consensus 100 ~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr 137 (202)
T PRK06718 100 ITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIR 137 (202)
T ss_pred CCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHH
Confidence 34455556777777778889999999888777776553
No 362
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=20.06 E-value=2.2e+02 Score=28.97 Aligned_cols=63 Identities=13% Similarity=-0.018 Sum_probs=42.9
Q ss_pred CCCEEEEEEeC-CChhhHHHHHHHHHHHHHcCCeeeeeEEecCCcccHH-hhhccccCCCCCCccEEEEc
Q psy4615 100 RVPTLTAILVG-NDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLFGRS-KLINPMSIPISTGVSSHISQ 167 (477)
Q Consensus 100 ~~P~LaiI~vG-dd~aS~~Yv~~k~k~a~~vGI~~~~~~~lp~~~~t~e-~~I~~L~~N~D~~V~GILVq 167 (477)
.+++++++.-+ +++-....++..++.|++.|..+. ......+. ..+ +.|+.+ .+.+||||++.
T Consensus 24 ~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~-i~~~~~~~-~~~~~~i~~l---~~~~vDGiIi~ 88 (330)
T PRK10355 24 KEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVF-VQSANGNE-ETQMSQIENM---INRGVDVLVII 88 (330)
T ss_pred CCceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEE-EECCCCCH-HHHHHHHHHH---HHcCCCEEEEe
Confidence 35667777643 356667778889999999999988 65443333 222 666666 23479999995
No 363
>PRK09291 short chain dehydrogenase; Provisional
Probab=20.04 E-value=87 Score=29.76 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.2
Q ss_pred CCeEEEECCCCCcchHHHHHhhhCCCCc
Q psy4615 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255 (477)
Q Consensus 228 Gk~vvViGrS~~VGkPLA~lL~~~~a~v 255 (477)
||.++|+|.+.-+|+-++..|+.+++.|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v 29 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNV 29 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 6789999999999999999999988754
Done!