RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4615
(477 letters)
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 201 bits (514), Expect = 1e-61
Identities = 73/193 (37%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130
A+IIDGK IA + E+ +V+A +A G R P L +LVG++ AS YV +K K+ +VG
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVG 62
Query: 131 EVNALGVLYHL-------TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAV 183
+ Y L L +N + + QLPLP + V +
Sbjct: 63 ---FVSRSYDLPETTSEAELLELIDTLNA-----DNTIDGILVQLPLPAGIDNVKVLERI 114
Query: 184 APHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMP 243
P KDVDGF+ NVGR C L PCTP G+ L+ RY ++TFG NAVV G S VG P
Sbjct: 115 HPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRP 174
Query: 244 IAMLLHADGAGVS 256
++M L G +
Sbjct: 175 MSMELLLAGCTTT 187
Score = 105 bits (264), Expect = 1e-25
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 11/63 (17%)
Query: 1 MVKPGACVIDVGITRI-----------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAA 49
+K GA VIDVGI R+ + ++ A YITPVPGGVGPMTVA L++NT+ A
Sbjct: 220 WIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQAC 279
Query: 50 KHA 52
Sbjct: 280 VEY 282
Score = 79.1 bits (196), Expect = 2e-16
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 253 AGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288
++ A YITPVPGGVGPMTVA L++NT+ A
Sbjct: 247 EDAAKRASYITPVPGGVGPMTVATLIENTLQACVEY 282
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 196 bits (500), Expect = 2e-59
Identities = 72/197 (36%), Positives = 103/197 (52%), Gaps = 16/197 (8%)
Query: 68 ANKAQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAA 127
+N +IDGK ++ + E L +V+ + P L AI+VGND AS TYV +K K+ A
Sbjct: 1 SNAMILIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACA 60
Query: 128 KVGEVNALGVLYHL-------TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVC 180
+VG + + L L +N + V + + QLPLP H+ + V
Sbjct: 61 QVGIDS---QVITLPEHTTESELLELIDQLNN-----DSSVHAILVQLPLPAHINKNNVI 112
Query: 181 NAVAPHKDVDGFNIVNVGRFCL-DLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKN 239
++ P KDVDGF+ NVGR L D K L CTP G+ ++R Y ++T G AVV G S
Sbjct: 113 YSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNV 172
Query: 240 VGMPIAMLLHADGAGVS 256
VG P++ LL A V+
Sbjct: 173 VGKPVSQLLLNAKATVT 189
Score = 104 bits (262), Expect = 2e-25
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Query: 1 MVKPGACVIDVGITRI----------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 50
MVK GA VIDVGI + V + ITPVPGGVGPMT+ L+ NT A+
Sbjct: 222 MVKEGAVVIDVGINHVDGKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQ 281
Score = 78.3 bits (194), Expect = 2e-16
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 251 DGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 286
D A V + ITPVPGGVGPMT+ L+ NT A+
Sbjct: 246 DFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQ 281
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 194 bits (495), Expect = 8e-59
Identities = 68/193 (35%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130
AQ+IDGK IA + +++ V G RVP L ILVG D AS YV +K K +VG
Sbjct: 5 AQLIDGKAIAANLRQQIAQRVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVG 64
Query: 131 EVNALGVLYHL-------TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAV 183
L Y L L +N + + QLPLP H+ + +
Sbjct: 65 ---FLSQAYDLPAETSQDDLLALIDRLND-----DPAIDGILVQLPLPAHLDASLLLERI 116
Query: 184 APHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMP 243
P KDVDGF+ N+GR + L PCTP G+ L+ + +G +AVV G S VG P
Sbjct: 117 HPDKDVDGFHPYNIGRLAQRMPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRP 176
Query: 244 IAMLLHADGAGVS 256
+A+ L G V+
Sbjct: 177 MALELLLGGCTVT 189
Score = 104 bits (262), Expect = 2e-25
Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 11/63 (17%)
Query: 1 MVKPGACVIDVGITRI-----------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAA 49
+K GA VIDVGI R + ++ A +ITPVPGGVGPMT A L++NT+ AA
Sbjct: 222 WIKEGAIVIDVGINRQADGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAA 281
Query: 50 KHA 52
+H
Sbjct: 282 EHL 284
Score = 78.7 bits (195), Expect = 2e-16
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 253 AGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288
++ A +ITPVPGGVGPMT A L++NT+ AA+H
Sbjct: 249 EVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHL 284
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD; 2.30A {Caenorhabditis
elegans} SCOP: c.2.1.3 d.81.1.3
Length = 537
Score = 197 bits (501), Expect = 3e-57
Identities = 88/164 (53%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Query: 294 SKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTISMH 353
SKS+VVDDMV SN IL+ + PD+ VVIKYVPYV DSKRA+DEY I +GG T +H
Sbjct: 376 SKSSVVDDMVKSNQILFPDAKNPDYCVVIKYVPYVADSKRAMDEYICSIFMGGKQTFVVH 435
Query: 354 NTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPGTP 413
NTCEDSLLASPLI DL IL EL+SR+ + EY FH VLSILS L KAP+VPPGTP
Sbjct: 436 NTCEDSLLASPLIYDLAILTELASRVSYKVD--DEYKPFHSVLSILSLLLKAPVVPPGTP 493
Query: 414 VVNALAQQRSCIENILRACLSLPPENSMTLEHKLPRRLFQDKSK 457
+ NA +Q S + ++ A P + M +E + KS+
Sbjct: 494 ISNAFMRQFSTLTKLVTALAGFPSDTDMQIEFFTQLPAAKSKSQ 537
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Length = 533
Score = 196 bits (499), Expect = 6e-57
Identities = 82/163 (50%), Positives = 112/163 (68%), Gaps = 7/163 (4%)
Query: 292 NISKSNVVDDMVASNSILYRP--GEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNT 349
ISKS+V+DD++ASN ILY G+K DH +VIKY+ VGDSK A+DEY SE++LGGHN
Sbjct: 370 EISKSSVIDDIIASNDILYNDKLGKKVDHCIVIKYMKPVGDSKVAMDEYYSELMLGGHNR 429
Query: 350 ISMHNTCEDSLLASPLILDLIILAELSSRIQFTSPTV-----AEYTYFHPVLSILSYLCK 404
IS+HN CEDSLLA+PLI+DL+++ E +R+ + ++ F+PVL+ LSY K
Sbjct: 430 ISIHNVCEDSLLATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLK 489
Query: 405 APLVPPGTPVVNALAQQRSCIENILRACLSLPPENSMTLEHKL 447
APL PG VN L +QR+ +EN LR + LP +N + E +L
Sbjct: 490 APLTRPGFHPVNGLNKQRTALENFLRLLIGLPSQNELRFEERL 532
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 186 bits (476), Expect = 7e-56
Identities = 77/196 (39%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVA-LGHRVPTLTAILVGNDSASSTYVNNKMKSAAKV 129
AQIIDGK IA I ELKD+V A G RVP L +I+VG S YV K K+AA+V
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 130 GEVNALGVLYHL-------TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNA 182
G L L + +N I QLPLP+H+ E
Sbjct: 66 G---MASFNVELPEDISQEVLEVNVEKLNN-----DPNCHGIIVQLPLPKHLNENRAIEK 117
Query: 183 VAPHKDVDGFNIVNVGRFCL--DLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNV 240
+ PHKD D VNVG PCT GV L++R +E GK AVV GRS V
Sbjct: 118 IHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIV 177
Query: 241 GMPIAMLLHADGAGVS 256
G P+A LL + A V+
Sbjct: 178 GAPVAALLMKENATVT 193
Score = 102 bits (256), Expect = 1e-24
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 17/70 (24%)
Query: 1 MVKPGACVIDVGITRIKC-----------------VSEVAGYITPVPGGVGPMTVAMLMK 43
+K GA V+DVG T + + A +I+PVPGGVGPMT+AML++
Sbjct: 228 WIKEGAAVVDVGTTPVPDPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLE 287
Query: 44 NTILAAKHAV 53
NT+ A K A+
Sbjct: 288 NTLEAFKAAL 297
Score = 79.1 bits (196), Expect = 1e-16
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 253 AGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289
+ A +I+PVPGGVGPMT+AML++NT+ A K A+
Sbjct: 261 EEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAAL 297
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 183 bits (467), Expect = 1e-54
Identities = 72/191 (37%), Positives = 91/191 (47%), Gaps = 16/191 (8%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130
A ++DGK + I +LK V A A G R P L ILVG+D S YV K AKVG
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAALDAAG-RTPGLGTILVGDDPGSQAYVRGKHADCAKVG 61
Query: 131 EVNALGVLYHL-------TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAV 183
+ L TL +N + P TG I QLPLP+H+ E A V
Sbjct: 62 ---ITSIRRDLPADISTATLNETIDELN--ANPDCTGY---IVQLPLPKHLDENAALERV 113
Query: 184 APHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMP 243
P KD DG + N+GR L +PCTP G+ L+RRY + G + VV GR VG P
Sbjct: 114 DPAKDADGLHPTNLGRLVLGTPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRP 173
Query: 244 IAMLLHADGAG 254
+ +LL
Sbjct: 174 LGLLLTRRSEN 184
Score = 102 bits (256), Expect = 1e-24
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 9/59 (15%)
Query: 1 MVKPGACVIDVGITRIKC---------VSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 50
MV+PGA VIDVG++R V E+AG+++P PGGVGP+T A L+ N + A+
Sbjct: 221 MVRPGAAVIDVGVSRTDDGLVGDVHPDVWELAGHVSPNPGGVGPLTRAFLLTNVVELAE 279
Score = 76.4 bits (189), Expect = 1e-15
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 255 VSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 286
V E+AG+++P PGGVGP+T A L+ N + A+
Sbjct: 248 VWELAGHVSPNPGGVGPLTRAFLLTNVVELAE 279
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 181 bits (462), Expect = 7e-54
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 17/194 (8%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVG 130
++DGK ++ I EELK++ + + G L ILVG++ AS TYV +K K+ + G
Sbjct: 4 MTLLDGKALSAKIKEELKEKNQFLKSKG-IESCLAVILVGDNPASQTYVKSKAKACEECG 62
Query: 131 EVNALGVLYHL-------TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAV 183
++YHL L +N V + QLPLP+H+ + + ++
Sbjct: 63 ---IKSLVYHLNENITQNELLALINTLNH-----DDSVHGILVQLPLPDHICKDLILESI 114
Query: 184 APHKDVDGFNIVNVGRFCLDLK-TLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGM 242
KDVDGF+ +NVG L L+ +PCTPLGV +L++ Y+++ GK+AV+ G S VG
Sbjct: 115 ISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGR 174
Query: 243 PIAMLLHADGAGVS 256
P+A +L GA VS
Sbjct: 175 PMATMLLNAGATVS 188
Score = 103 bits (259), Expect = 5e-25
Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 11/64 (17%)
Query: 1 MVKPGACVIDVGITRI-----------KCVSEVAGYITPVPGGVGPMTVAMLMKNTILAA 49
MVK G V+DVGI R+ + VS+ + YITPVPGGVGPMT+AML++NT+ +A
Sbjct: 221 MVKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSA 280
Query: 50 KHAV 53
K+ +
Sbjct: 281 KNRL 284
Score = 78.7 bits (195), Expect = 2e-16
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 251 DGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289
D VS+ + YITPVPGGVGPMT+AML++NT+ +AK+ +
Sbjct: 246 DFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL 284
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 181 bits (462), Expect = 1e-53
Identities = 66/197 (33%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 71 AQIIDGKFIANTILEELKDEVKAWVALGH-RVPTLTAILVGNDSASSTYVNNKMKSAAKV 129
A+I++GK I+ I LK++V P L + VGN S+ Y+N K+K+A ++
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 130 GEVNALGVLYHL-------TLFGRSKLINPMSIPISTGVSSHISQLPLPEHMV--ERAVC 180
G L + +N + V + QLPL V
Sbjct: 64 G---IKATHIKLPRTTTESEVMKYITSLNE-----DSTVHGFLVQLPLDSENSINTEEVI 115
Query: 181 NAVAPHKDVDGFNIVNVGRFCL--DLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSK 238
NA+AP KDVDG +N GR IPCTP G ELI+ V G++AVV GRSK
Sbjct: 116 NAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSK 175
Query: 239 NVGMPIAMLLHADGAGV 255
VG P+ LL + A V
Sbjct: 176 IVGAPMHDLLLWNNATV 192
Score = 101 bits (255), Expect = 2e-24
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 17/70 (24%)
Query: 1 MVKPGACVIDVGITRIKC-----------------VSEVAGYITPVPGGVGPMTVAMLMK 43
+KPGA VID GI + E A +ITPVPGGVGPMTVAMLM+
Sbjct: 226 WIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQ 285
Query: 44 NTILAAKHAV 53
+T+ +AK +
Sbjct: 286 STVESAKRFL 295
Score = 79.1 bits (196), Expect = 2e-16
Identities = 22/37 (59%), Positives = 28/37 (75%)
Query: 253 AGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAV 289
E A +ITPVPGGVGPMTVAMLM++T+ +AK +
Sbjct: 259 DEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFL 295
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 181 bits (461), Expect = 2e-53
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 49/221 (22%)
Query: 68 ANKAQIIDGKFIANTILEELKDEVKAWVA-LGHRVPTLTAILVGNDSASSTYVNNKMKSA 126
+ + I +A T E+ + V+ + + P L L ND A+ Y K++
Sbjct: 2 SKPGRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTS 61
Query: 127 AKVGEVNALGVLYHLTLFGRSKLINPMSIPISTGVSSHIS-------------QLPLPEH 173
+G F R L + I P+ +
Sbjct: 62 ESMG-------------F-RYDLRVIED---KDFLEEAIIQANGDDSVNGIMVYFPVFGN 104
Query: 174 MVERAVCNAVAPHKDVDGFNIVNVGRFCL---------DLKTLIPCTPLGVQELIRRYKV 224
++ + V KDV+G N V LK+++PCTPL + +++ K+
Sbjct: 105 AQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKI 164
Query: 225 ---------ETFGKNAVVCGRSKNVGMPIAMLLHADGAGVS 256
+GK +V RS+ VG P+A LL DGA V
Sbjct: 165 YNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY 205
Score = 85.9 bits (213), Expect = 9e-19
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 1 MVKPGACVIDVGITRIKC--VSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 50
+K GA I+ T+ V E A P+ G V T+AML++N + +
Sbjct: 264 YIKEGAVCINFACTKNFSDDVKEKASLYVPMTGKV---TIAMLLRNMLRLVR 312
Score = 61.6 bits (150), Expect = 1e-10
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 251 DGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 286
V E A P+ G V T+AML++N + +
Sbjct: 280 FSDDVKEKASLYVPMTGKV---TIAMLLRNMLRLVR 312
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 178 bits (455), Expect = 5e-53
Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 72 QIIDGKFIANTILEELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGE 131
+I+ G+ IA E L ++ P+L I +G++ A+S Y K++ K+G
Sbjct: 2 KILRGEEIAEKKAENLHGIIER----SGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI 57
Query: 132 VNALGVLYHLTLFGRSKLINPMSIP-------IST-----GVSSHISQLPLPEHMVERAV 179
L I I ++ + + PLP+ +
Sbjct: 58 --------------AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEI 103
Query: 180 CNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKN 239
+ +KDVD + N G L+ + L+P TP V +++ Y + RS
Sbjct: 104 VRNIPYYKDVDALSPYNQGLIALNREFLVPATPRAVIDIMDYYGYH--ENTVTIVNRSPV 161
Query: 240 VGMPIAMLLHADGAGVS 256
VG P++M+L VS
Sbjct: 162 VGRPLSMMLLNRNYTVS 178
Score = 102 bits (258), Expect = 5e-25
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 10/60 (16%)
Query: 1 MVKPGACVIDVGITRIK----------CVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 50
MV PG+ VIDVGI + +SE ITPVPGGVGP+T +++N + AA+
Sbjct: 211 MVTPGSVVIDVGINYVNDKVVGDANFEDLSEYVEAITPVPGGVGPITATNILENVVKAAE 270
Score = 77.9 bits (193), Expect = 3e-16
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 251 DGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 286
+ +SE ITPVPGGVGP+T +++N + AA+
Sbjct: 235 NFEDLSEYVEAITPVPGGVGPITATNILENVVKAAE 270
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419,
structural genomics, JCSG, PSI, protein structure
initiative; HET: NAD; 1.70A {Thermotoga maritima} SCOP:
c.2.1.3 d.81.1.3 PDB: 3cin_A*
Length = 394
Score = 123 bits (310), Expect = 2e-31
Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 24/147 (16%)
Query: 292 NISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTIS 351
+KS++V D++ + P + Y+ +GD K G + +
Sbjct: 270 EFTKSSIVKDILGYD--------APHYIKPTGYLEPLGDKKFIAIHIEYVSFNGATDELM 321
Query: 352 MHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPG 411
++ DS L++DL+ L +++ + F V + ++ K P
Sbjct: 322 INGRINDSPALGGLLVDLVRLGKIA----------LDRKEFGTVYPVNAFYMKNP----- 366
Query: 412 TPVVNALAQQRSCIENILRACLSLPPE 438
R +R L P+
Sbjct: 367 -GPAEEKNIPRIIAYEKMRIWAGLKPK 392
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; HET: NAD; 1.95A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3
Length = 367
Score = 121 bits (305), Expect = 8e-31
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 292 NISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTIS 351
ISK+ V + K H +V ++ D K A +
Sbjct: 249 KISKTQAVTSN-----LKREFKTKDVHIGPSDHVGWLDDRKWAYVRLEGRAFGDVPLNLE 303
Query: 352 MHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPG 411
DS ++ +I+D + A+++ PV+ +YL K+P
Sbjct: 304 YKLEVWDSPNSAGVIIDAVRAAKIAKD----------RGIGGPVIPASAYLMKSPPEQLP 353
Query: 412 TPVVNALAQQ 421
+ A ++
Sbjct: 354 DDIARAQLEE 363
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding
rossmann fold, L-MYO-inositol 1-phosphate syntha
isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus}
PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Length = 392
Score = 117 bits (294), Expect = 3e-29
Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 24/140 (17%)
Query: 292 NISKSNVVDDMVASNSILYRPGEKPDHTVVIKYVPYVGDSKRALDEYTSEILLGGHNTIS 351
+SK V++ M+ G P I+Y P + D+K A D + LG
Sbjct: 275 VLSKDKVLEKML---------GYSPYSITEIQYFPSLVDNKTAFDFVHFKGFLGKLMKFY 325
Query: 352 MHNTCEDSLLASPLILDLIILAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPLVPPG 411
D+++A+PLILD+ + + V+ +++ K+ P
Sbjct: 326 FIWDAIDAIVAAPLILDIARFLLFAKKKG-----------VKGVVKEMAFFFKS---PMD 371
Query: 412 TPVVNALAQQRSCIENILRA 431
T V+N +Q ++
Sbjct: 372 TNVIN-THEQFVVLKEWYSN 390
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 1e-05
Identities = 70/501 (13%), Positives = 141/501 (28%), Gaps = 169/501 (33%)
Query: 13 ITRIKCVSEV---------AGYITPVPG--GVGPMTVAMLMKNTILAAK----HAV---- 53
++R++ ++ A + + G G G K T +A + V
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVL-IDGVLGSG--------K-TWVALDVCLSYKVQCKM 180
Query: 54 ---IY-----NVLQPNAILHKKANKAQIIDGKFIA------------NTILEELK----- 88
I+ N P +L ID + + ++I EL+
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 89 ----------DEV---KAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNAL 135
V KAW A L L + +++ + + +
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTT--HISLDHHS 295
Query: 136 GVLYH---LTLFGRSKLINPMSIPISTGVSSHISQLPLPEHMVERAVCNAVA-----PHK 187
L +L + P +P ++++ P ++ ++ + +A H
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREV-LTTN----PRRLSIIAESIRDGLATWDNWKHV 350
Query: 188 DVDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYK-VETFGKNA-----VVC----GRS 237
+ D + L L P E + + + F +A ++
Sbjct: 351 NCDKLTTI----IESSLNVLEP------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 238 KNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVI---YNIS 294
K+ M + LH + +P + + + +K A H I YNI
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPS----IYLELKVKLENEYALHRSIVDHYNIP 456
Query: 295 KSNVVDDMVASNS-------ILY-----RPGEKPD-----------------HT------ 319
K+ DD++ I + E+ H
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 320 ---------VVIKYVPYVGDSKRALDEYTSEILLGGHNTISMHNTCEDSLLASPLILDLI 370
+ Y PY+ D+ + + IL E++L+ S DL+
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFLPK----IEENLICSKY-TDLL 568
Query: 371 ILAELSSRIQFTSPTVAEYTY 391
+A + + E +
Sbjct: 569 RIA-----LMAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 52/363 (14%), Positives = 95/363 (26%), Gaps = 156/363 (42%)
Query: 154 SIPISTGVSSHISQLPLPEHMVERAVCNAVAPHKDVDGFNIVNVGRFCLDLKTLIPCT-- 211
+ + T SQL ++ +F K L T
Sbjct: 19 VLLVPTASFFIASQL------------------QE----------QF---NKILPEPTEG 47
Query: 212 ------PLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPV 265
P EL+ ++ L + V+ + P
Sbjct: 48 FAADDEPTTPAELVGKF------------------------LGY--------VSSLVEPS 75
Query: 266 PGGVGPMTVAMLMK---NTILAAK--HAVIYNI---------SKSNVVDDMVASNSILYR 311
G + + + N L HA+ + ++ + + + + R
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 312 PGEKPDHTVVIKYVPYVGDSK--RALDEYTSEI--LLGGHNTISMHNTCEDSLLA----- 362
P +K +S RA+ E +++ + GG + + L
Sbjct: 136 PFDKK------------SNSALFRAVGEGNAQLVAIFGGQGNT---DDYFEELRDLYQTY 180
Query: 363 SPLILDLI-----ILAELSSRIQFTSPTVAEYTYFHPVLSILS------------YLCKA 405
L+ DLI L+EL + AE + L+IL YL
Sbjct: 181 HVLVGDLIKFSAETLSELIR-----TTLDAEKVFTQ-GLNILEWLENPSNTPDKDYLLSI 234
Query: 406 PL-VPPGTPVVNALAQQRSCIENILRAC--LSLPPENSMTLEHKLPRRLFQDKSKSIDSH 462
P+ P + + Q + + + L P + K H
Sbjct: 235 PISCP-----LIGVIQ----LAHYVVTAKLLGFTPGE------------LRSYLKGATGH 273
Query: 463 PQG 465
QG
Sbjct: 274 SQG 276
Score = 38.5 bits (89), Expect = 0.006
Identities = 64/362 (17%), Positives = 113/362 (31%), Gaps = 121/362 (33%)
Query: 85 EELKDEVKAWVALGHRVPTLTAILVGNDSASSTYVNNKMKSAAKVGEVNALGVLYHLTLF 144
EL+ +K A GH +TA+ + + + ++ + + + A+ VL+ +
Sbjct: 261 GELRSYLKG--ATGHSQGLVTAVAI---AETDSWES--FFVSVR----KAITVLFFI--- 306
Query: 145 G-RSKLINP-MSIPIST---------GVSSH---ISQLPLPEHMVERAV--CNAVAPHKD 188
G R P S+P S GV S IS L + V+ V N+ P
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNKTNSHLPAGK 364
Query: 189 VDGFNIVNVGRFCLDLKTLIPCTPLGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLL 248
++VN G KN VV G P + L
Sbjct: 365 QVEISLVN-GA-----------------------------KNLVVSGP------PQS--L 386
Query: 249 HADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHAVIYNISKSNVVDDMVASNSI 308
+ + + P G+ ++ I ++ + + SN
Sbjct: 387 YGLNLTLRKAK-----APSGLD--------QSRIPFSERKLKF-------------SNRF 420
Query: 309 LYRPGEKPDHTVVIKYVPYVGDSKRAL--DEYTSEILLGG-------HNTISMHNTCEDS 359
L P P H+ + + + D + + ++T + S
Sbjct: 421 L--PVASPFHS------HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 360 LLASPLILDLIILAELSSRIQFTSPTVAEYTY---FHP-VLSILSYLCKAPLVPPGTPVV 415
S I+D II +++ + T + T+ F P S L L G V+
Sbjct: 473 GSISERIVDCII----RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 416 NA 417
A
Sbjct: 529 VA 530
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 36.5 bits (84), Expect = 0.013
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 2 VKPGACVIDVGITRIKCVSEVAGY-------ITPVPGGVGPMTVAMLMKNTIL 47
+ VID+ A + +PG V P T ++ + ++
Sbjct: 234 MPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLV 286
Score = 29.2 bits (65), Expect = 2.6
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 215 VQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGVSEVA 259
+ I+ G N V G VGM +A A GA V A
Sbjct: 142 IMMAIQHTDFTIHGANVAVLGLG-RVGMSVARKFAALGAKVKVGA 185
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 34.8 bits (81), Expect = 0.036
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K +V S+ +G +A +L +GA V
Sbjct: 19 DKGVLVLAASRGIGRAVADVLSQEGAEV 46
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 34.8 bits (81), Expect = 0.038
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV----------SEVAGYITPVPGGVGPMTVA 275
GK AVV S +G A+ L +GA + A I + G VA
Sbjct: 7 GKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 34.4 bits (80), Expect = 0.078
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 213 LGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYI 262
+ +E+ ++ GK + G NVG A L GA VS++ G
Sbjct: 195 VATREMAKKLWGGIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSDINGVA 246
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 34.0 bits (79), Expect = 0.098
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 213 LGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYI 262
+ ++E +++ ++ ++ G N G +A +H GA G+S+ G +
Sbjct: 206 ICIEEAVKKKGIKLQNARIIIQG-FGNAGSFLAKFMHDAGAKVIGISDANGGL 257
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 34.1 bits (79), Expect = 0.10
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 213 LGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYI 262
+ + ++ G + G NVG A H GA V + G +
Sbjct: 220 ITAAAAAEKIGLQVEGARVAIQG-FGNVGNAAARAFHDHGARVVAVQDHTGTV 271
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 33.6 bits (78), Expect = 0.12
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 213 LGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVAGYI 262
L ++ L +R ++ G VV G VG +A+ G V+ G +
Sbjct: 203 LVLEALAKRRGLDLRGARVVVQG-LGQVGAAVALHAERLGMRVVAVATSMGGM 254
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 32.3 bits (74), Expect = 0.31
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
A+V G +K +G IA LHA+G V
Sbjct: 9 VPVALVTGAAKRLGRSIAEGLHAEGYAV 36
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 32.0 bits (73), Expect = 0.35
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
A+V G +K +G IA LHA+G V
Sbjct: 46 VPVALVTGAAKRLGRSIAEGLHAEGYAV 73
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 31.7 bits (73), Expect = 0.43
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
GK A+V G S+ +G IA+ L GA V V Y V + K A
Sbjct: 4 GKVALVTGASRGIGRAIAIDLAKQGANV--VVNYAGNEQKANE--VVDEIKKLGSDA--I 57
Query: 288 AVIYNISKSNVVDDMVAS 305
AV +++ + V +MV
Sbjct: 58 AVRADVANAEDVTNMVKQ 75
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 31.9 bits (73), Expect = 0.48
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK- 286
GK AVV G ++ +G IA + DGA V V G A +K
Sbjct: 213 GKVAVVTGAARGIGATIAEVFARDGATV-----VAIDVDGA------AEDLKRVADKVGG 261
Query: 287 HAVIYNISKSNVVDDMVA 304
A+ +++ + VD + A
Sbjct: 262 TALTLDVTADDAVDKITA 279
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 31.4 bits (72), Expect = 0.52
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK A+V G + +G IA L A+GA V
Sbjct: 10 GKTALVTGSTAGIGKAIATSLVAEGANV 37
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 31.3 bits (72), Expect = 0.53
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
K+A+V G S+ +G IA+ L +G V Y V + + +
Sbjct: 4 TKSALVTGASRGIGRSIALQLAEEGYNV--AVNYAGSKEKAEA--VVEEIKAKGVDS--F 57
Query: 288 AVIYNISKSNVVDDMVAS 305
A+ N++ ++ V M+
Sbjct: 58 AIQANVADADEVKAMIKE 75
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 31.4 bits (72), Expect = 0.53
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
AV+ G ++ +G IA+ LH G V
Sbjct: 11 CPAAVITGGARRIGHSIAVRLHQQGFRV 38
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 31.3 bits (72), Expect = 0.55
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
K A+V G S+ +G +A L + GA V G T + + A
Sbjct: 5 EKVALVTGASRGIGFEVAHALASKGA---TVVGTATSQASAEK--FENSMKEKGFKA--R 57
Query: 288 AVIYNISKSNVVDDMVAS 305
++ NIS + + A
Sbjct: 58 GLVLNISDIESIQNFFAE 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.61
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 11/36 (30%)
Query: 372 LAELSSRIQFTSPTVAEYTYFHPVLSILSYLCKAPL 407
L +L + ++ + A P L+I KA +
Sbjct: 22 LKKLQASLKLYADDSA------PALAI-----KATM 46
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 31.1 bits (71), Expect = 0.62
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
AVV G +K +G IA+ LH G V
Sbjct: 23 APAAVVTGAAKRIGRAIAVKLHQTGYRV 50
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 31.0 bits (71), Expect = 0.66
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K V+ G KN+G A + +
Sbjct: 11 NKVIVIAGGIKNLGALTAKTFALESVNL 38
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 30.9 bits (71), Expect = 0.75
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
GK A+V G S+ +G IA LL GA +V G T G A + + +
Sbjct: 9 GKVALVTGASRGIGKAIAELLAERGA---KVIGTATSESG-------AQAISDYLGDNGK 58
Query: 288 AVIYNISKSNVVDDMVAS 305
+ N++ ++ ++ +
Sbjct: 59 GMALNVTNPESIEAVLKA 76
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 31.0 bits (71), Expect = 0.76
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
+ A+V G S+ +G IA+ L GA V G T G G A + +
Sbjct: 28 KQVAIVTGASRGIGRAIALELARRGA---MVIGTATTEAGAEG--IGAAFKQAGLEG--R 80
Query: 288 AVIYNISKSNVVDDMVAS 305
+ N++ + VD +V S
Sbjct: 81 GAVLNVNDATAVDALVES 98
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 31.0 bits (71), Expect = 0.80
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
++ +V G +K +G IA + GA V +P A L +
Sbjct: 41 ARSVLVTGGTKGIGRGIATVFARAGANV--AVAARSPRELSS---VTAELGELGAGNV-I 94
Query: 288 AVIYNISKSNVVDDMVAS 305
V ++S D +
Sbjct: 95 GVRLDVSDPGSCADAART 112
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 30.6 bits (70), Expect = 0.90
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
G++ VV G +K +G IA + GA V + VA L +
Sbjct: 10 GRSVVVTGGTKGIGRGIATVFARAGANV--AVAGRSTADID---ACVADLDQLGSGKV-I 63
Query: 288 AVIYNISKSNVVDDMVAS 305
V ++S D +
Sbjct: 64 GVQTDVSDRAQCDALAGR 81
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 30.6 bits (70), Expect = 0.90
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 7/78 (8%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
K A+V G + +G IA +L + V V + +
Sbjct: 44 NKVALVTGAGRGIGREIAKMLAKSVS---HVICISRTQKSCDS--VVDEIKSFGYES--S 96
Query: 288 AVIYNISKSNVVDDMVAS 305
++SK + +++
Sbjct: 97 GYAGDVSKKEEISEVINK 114
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 30.6 bits (70), Expect = 0.93
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
G+ A+V G SK +G IA L GA V + A + +
Sbjct: 12 GRKAIVTGGSKGIGAAIARALDKAGATV--AIADLDV--------MAAQAVVAGLENGGF 61
Query: 288 AVIYNISKSNVVDDMVA 304
AV +++K VD +
Sbjct: 62 AVEVDVTKRASVDAAMQ 78
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 30.7 bits (70), Expect = 0.96
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAA-- 285
GK + G S+ +G+ IA + ADGA V + P P T+ K I A
Sbjct: 9 GKTMFISGGSRGIGLAIAKRVAADGANV--ALVAKSAEPHPKLPGTIYTAAK-EIEEAGG 65
Query: 286 -KHAVIYNISKSNVVDDMVA 304
++ +I + V VA
Sbjct: 66 QALPIVGDIRDGDAVAAAVA 85
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 30.6 bits (70), Expect = 0.99
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
G+ A+V G + +G IA HA GA V
Sbjct: 27 GRKALVTGATGGIGEAIARCFHAQGAIV 54
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 30.6 bits (70), Expect = 1.00
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
+ A+V G S+ +G IA+ L A GA V Y + VA + A
Sbjct: 28 DRIALVTGASRGIGRAIALELAAAGAKV--AVNYASSAGAADE--VVAAIAAAGGEA--F 81
Query: 288 AVIYNISKSNVVDDMVAS 305
AV ++S+ + V+ + A+
Sbjct: 82 AVKADVSQESEVEALFAA 99
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 30.6 bits (70), Expect = 1.0
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 214 GVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGAGV 255
G + L + + ++ G S+ VG+ A+ L G V
Sbjct: 13 GRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRV 54
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 30.6 bits (70), Expect = 1.0
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAA-- 285
GK + G S+ +G+ IA+ DGA V + V P T+ + AA
Sbjct: 6 GKTLFITGASRGIGLAIALRAARDGANV--AIAAKSAVANPKLPGTIHSAAA-AVNAAGG 62
Query: 286 -KHAVIYNISKSNVVDDMVA 304
A+ +I + + V VA
Sbjct: 63 QGLALKCDIREEDQVRAAVA 82
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 30.8 bits (70), Expect = 1.1
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 239 NVGMPIAMLLHADGA---GVSEVAGYI 262
NVG+ LH GA V E G I
Sbjct: 254 NVGLHSMRYLHRFGAKCITVGESDGSI 280
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 30.2 bits (69), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK +++ G S +G IA LLH G+ V
Sbjct: 14 GKTSLITGASSGIGSAIARLLHKLGSKV 41
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 30.2 bits (69), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK AV+ G S +G+ IA +GA +
Sbjct: 7 GKVAVITGSSSGIGLAIAEGFAKEGAHI 34
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 30.2 bits (69), Expect = 1.3
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
GK A++ G +K +G IA A GA + V L + H
Sbjct: 20 GKRALITGATKGIGADIARAFAAAGARL--VLSGRDVSELD---AARRALGEQFGTDV-H 73
Query: 288 AVIYNISKSNVVDDMVA 304
V ++++ + ++
Sbjct: 74 TVAIDLAEPDAPAELAR 90
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 30.1 bits (69), Expect = 1.3
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 229 KNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKHA 288
+ A++ G S+ +G IA+ L DG + Y VA +
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFAL--AIHYGQNREKA---EEVAEEARRRGSPLVAV 56
Query: 289 VIYNISKSNVVDDMVAS 305
+ N+ ++ +V
Sbjct: 57 LGANLLEAEAATALVHQ 73
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 30.1 bits (69), Expect = 1.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK ++V G ++ +G IA L + G+ V
Sbjct: 7 GKVSLVTGSTRGIGRAIAEKLASAGSTV 34
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 30.1 bits (69), Expect = 1.4
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
GK A+V G S+ +G IA L GA + V T I
Sbjct: 5 GKTAIVTGSSRGLGKAIAWKLGNMGANI--VLNGSPASTSLDA--TAEEFKAAGINV--V 58
Query: 288 AVIYNISKSNVVDDMVAS 305
++ V++MV +
Sbjct: 59 VAKGDVKNPEDVENMVKT 76
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 30.2 bits (69), Expect = 1.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
++ +V G ++ +G+ IA G V
Sbjct: 21 SRSVLVTGGNRGIGLAIARAFADAGDKV 48
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 29.8 bits (68), Expect = 1.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
++ +V G ++ +G+ IA L ADG V
Sbjct: 15 SRSVLVTGGNRGIGLAIAQRLAADGHKV 42
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 29.8 bits (68), Expect = 1.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK A+V G ++ +G IA L ADGA V
Sbjct: 6 GKTALVTGAAQGIGKAIAARLAADGATV 33
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 29.8 bits (68), Expect = 1.5
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K ++ G + +G L +GA +
Sbjct: 5 DKAVLITGAAHGIGRATLELFAKEGARL 32
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 30.2 bits (68), Expect = 1.5
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAA-- 285
G + G S+ +G IA+ DGA + V T P T+ + I A
Sbjct: 45 GCTVFITGASRGIGKAIALKAAKDGANI--VIAAKTAQPHPKLLGTIYTAAEE-IEAVGG 101
Query: 286 -KHAVIYNISKSNVVDDMVA 304
I ++ + V
Sbjct: 102 KALPCIVDVRDEQQISAAVE 121
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 29.8 bits (68), Expect = 1.6
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
++A++ +K +G + L A G V
Sbjct: 7 VRHALITAGTKGLGKQVTEKLLAKGYSV 34
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 29.8 bits (68), Expect = 1.6
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYIT 263
+ A V G +G I LH DG V VAG
Sbjct: 13 QRIAYVTGGMGGIGTSICQRLHKDGFRV--VAGCGP 46
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 29.8 bits (68), Expect = 1.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK A+V G + +G+ L GA V
Sbjct: 8 GKKAIVIGGTHGMGLATVRRLVEGGAEV 35
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 29.8 bits (68), Expect = 1.9
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 10/58 (17%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV----------SEVAGYITPVPGGVGPMTVA 275
AVV G S +G+ LL GA V + G
Sbjct: 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASV 65
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 29.5 bits (67), Expect = 2.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
+ A V G +G I+ LH G V
Sbjct: 25 KRVAFVTGGMGGLGAAISRRLHDAGMAV 52
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 29.5 bits (67), Expect = 2.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
+ A+V G + +G+ IA L +G V
Sbjct: 22 SEVALVTGATSGIGLEIARRLGKEGLRV 49
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 29.2 bits (66), Expect = 2.6
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
G+ A+V G + +G I L G+ V I L N +
Sbjct: 18 GQVAIVTGGATGIGKAIVKELLELGSNV-----VIASRKLERLKSAADELQANLPPTKQA 72
Query: 288 AVIY---NISKSNVVDDMVAS 305
VI NI V+++V S
Sbjct: 73 RVIPIQCNIRNEEEVNNLVKS 93
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 29.4 bits (66), Expect = 2.8
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 2 VKPGACVIDVGITRIKCVSEVAG------YITP-VPGGVGPMTVAMLMKNTIL 47
+ P ++D+ + A + P +PG V P T ++ N +
Sbjct: 236 MTPKTLILDLASRPGGTDFKYAEKQGIKALLAPGLPGIVAPKTAGQILANVLS 288
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 29.0 bits (66), Expect = 2.9
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK +V G + +G L +GA +
Sbjct: 6 GKTILVTGAASGIGRAALDLFAREGASL 33
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
biosynthesis, condensatio domain, peptide bond
formation, ligase; 1.85A {Brevibacillus brevis}
Length = 520
Score = 29.4 bits (67), Expect = 2.9
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 24/86 (27%)
Query: 344 LGGHNTISMHNTCEDSLLASPLI------LDLIILAELSSRIQFTSPTVAEYTYFHPVLS 397
LGGH SL A ++ + ++ RI F PT+ E F +
Sbjct: 37 LGGH-----------SLRAMRVLSSMHNEYQV----DIPLRILFEKPTIQELAAFIEETA 81
Query: 398 ILSYLCKAPLVPPGT-PVVNALAQQR 422
+ P+ PV + AQ+R
Sbjct: 82 KGNVFSIEPVQKQAYYPV--SSAQKR 105
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 29.1 bits (66), Expect = 3.0
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
G+ A+V G VG IA L A+G V V P + T
Sbjct: 33 GRIALVTGGGTGVGRGIAQALSAEGYSV--VITGRRPDVLD---AAAGEIGGRTGNIV-R 86
Query: 288 AVIYNISKSNVVDDMVA 304
AV+ ++ + V + A
Sbjct: 87 AVVCDVGDPDQVAALFA 103
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 29.1 bits (66), Expect = 3.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
+ A V G S +G+ +A L A G V
Sbjct: 24 PQTAFVTGVSSGIGLAVARTLAARGIAV 51
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 29.0 bits (66), Expect = 3.2
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
K AV+ G + +G IA +GA + + P P A +
Sbjct: 7 DKLAVITGGANGIGRAIAERFAVEGADI--AIADLVPAPE-----AEAAIRNLGRRV--L 57
Query: 288 AVIYNISKSNVVDDMVA 304
V ++S+ V+
Sbjct: 58 TVKCDVSQPGDVEAFGK 74
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 29.1 bits (66), Expect = 3.3
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV------SEVAGYITPVPGGVGPMTVAMLMKNT 281
A+V G +G +++ L +GA V A + GG G +
Sbjct: 7 SALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHA 66
Query: 282 ILAAKHAVIYNISKSNVVDDMVAS 305
A ++S++ ++
Sbjct: 67 AFQA------DVSEARAARCLLEQ 84
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 28.7 bits (65), Expect = 4.2
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 17/77 (22%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
GKN V G K +G A+ GA V
Sbjct: 7 GKNVWVTGAGKGIGYATALAFVEAGAKV--TGFDQAFTQEQ---------------YPFA 49
Query: 288 AVIYNISKSNVVDDMVA 304
+ +++ + V +
Sbjct: 50 TEVMDVADAAQVAQVCQ 66
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 28.7 bits (65), Expect = 4.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK ++ G S+ +G+ A L GA V
Sbjct: 7 GKRVLITGSSQGIGLATARLFARAGAKV 34
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 28.3 bits (64), Expect = 4.8
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
GK A+V G S +G IA GA + V I +A I A H
Sbjct: 34 GKIALVTGASYGIGFAIASAYAKAGATI--VFNDINQELVD---RGMAAYKAAGINA--H 86
Query: 288 AVIYNISKSNVVDDMVAS 305
+ +++ + + MVA
Sbjct: 87 GYVCDVTDEDGIQAMVAQ 104
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 28.2 bits (64), Expect = 4.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K A+V G S+ VG A+ L +G +
Sbjct: 4 NKCALVTGSSRGVGKAAAIRLAENGYNI 31
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 28.3 bits (64), Expect = 4.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
G+ AVV G S+ +G IA L + GA V
Sbjct: 29 GQVAVVTGASRGIGAAIARKLGSLGARV 56
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 28.3 bits (64), Expect = 4.9
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K V+ G S+ +G + V
Sbjct: 28 QKVVVITGASQGIGAGLVRAYRDRNYRV 55
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 28.3 bits (64), Expect = 5.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
A+V G + +G IA GA V
Sbjct: 12 DAVAIVTGAAAGIGRAIAGTFAKAGASV 39
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 28.2 bits (64), Expect = 5.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
G A+V G K +G LHA GA V
Sbjct: 7 GLRALVTGAGKGIGRDTVKALHASGAKV 34
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.3 bits (63), Expect = 5.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVA 259
GK AVV + VGM A LL +GA V
Sbjct: 119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCG 150
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene
mycotoxin, deoxynivaleno toxin, fusarium graminearum,
coenzyme A; 1.75A {Fusarium sporotrichioides} PDB:
3fp0_A*
Length = 519
Score = 28.4 bits (62), Expect = 6.6
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 84 LEELKDEVK-AWVALGHRVPTLTAILVGNDSASSTYV 119
L+ LK+ + A + P + +D +
Sbjct: 71 LQNLKEMFELALLDARFEHPECACTVSWDDEVPAIIT 107
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 27.8 bits (63), Expect = 6.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
G+ +V G K +G LHA GA V
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARV 34
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 27.9 bits (63), Expect = 6.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K A+V G S+ +G IA L +DG V
Sbjct: 27 NKVAIVTGASRGIGAAIAARLASDGFTV 54
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 27.9 bits (63), Expect = 6.7
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 228 GKNAVVCGRSKN-VGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK 286
GK +V + +G A +GA V V G T L +
Sbjct: 22 GKVVLVTAAAGTGIGSTTARRALLEGADV--VISDYHERRLG---ETRDQLADLGLGRV- 75
Query: 287 HAVIYNISKSNVVDDMVA 304
AV+ +++ + VD ++
Sbjct: 76 EAVVCDVTSTEAVDALIT 93
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 27.9 bits (63), Expect = 6.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
A+V G + +G+ IA L A G +
Sbjct: 29 RPVAIVTGGRRGIGLGIARALAASGFDI 56
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 28.0 bits (63), Expect = 6.8
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAKH 287
K AV+ G + +G+ IA L GA + V TV +
Sbjct: 25 TKTAVITGSTSGIGLAIARTLAKAGANI--VLNGFGAPDEI---RTVTDEVAGLSSGTVL 79
Query: 288 AVIYNISKSNVVDDMVA 304
+++K + + DM+A
Sbjct: 80 HHPADMTKPSEIADMMA 96
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 27.9 bits (63), Expect = 7.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K +V G +K +G I GA +
Sbjct: 14 AKTVLVTGGTKGIGHAIVEEFAGFGAVI 41
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 28.0 bits (63), Expect = 7.3
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK- 286
GK+ ++ G S +G A++ +GA V T ++K + A K
Sbjct: 26 GKSVIITGSSNGIGRSAAVIFAKEGAQV--TITGRNEDRLEE---TKQQILKAGVPAEKI 80
Query: 287 HAVIYNISKSNVVDDMVAS 305
+AV+ ++++++ DD++ +
Sbjct: 81 NAVVADVTEASGQDDIINT 99
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 27.9 bits (63), Expect = 7.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK A+V G + +G +A+ L GA V
Sbjct: 18 GKVALVTGSGRGIGAAVAVHLGRLGAKV 45
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 27.9 bits (63), Expect = 7.4
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 213 LGVQELIRRYKVETFGKNAVVCGRSKNVGMPIAMLLHADGA---GVSEVA-----GYI 262
+ V+E +R+ ++ V G NVG + G ++E +
Sbjct: 197 VVVRESAKRFGIKMEDAKIAVQG-FGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYAL 253
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 27.8 bits (63), Expect = 7.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
K A+V + +G+ IA L DGA V
Sbjct: 14 NKVALVTASTDGIGLAIARRLAQDGAHV 41
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 27.6 bits (62), Expect = 9.1
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGVSEVAGYITPVPGGVGPMTVAMLMKNTILAAK- 286
K ++ G S +G A+L +GA V+ IT T +++K+ + +
Sbjct: 6 NKTVIITGSSNGIGRTTAILFAQEGANVT-----ITGRSSERLEETRQIILKSGVSEKQV 60
Query: 287 HAVIYNISKSNVVDDMVAS 305
++V+ +++ + D ++ S
Sbjct: 61 NSVVADVTTEDGQDQIINS 79
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 27.6 bits (62), Expect = 9.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 228 GKNAVVCGRSKNVGMPIAMLLHADGAGV 255
GK A+ G + +G IA+ L GA V
Sbjct: 21 GKVALTTGAGRGIGRGIAIELGRRGASV 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,233,879
Number of extensions: 446462
Number of successful extensions: 1210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 151
Length of query: 477
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 380
Effective length of database: 3,993,456
Effective search space: 1517513280
Effective search space used: 1517513280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)