BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4616
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H2U|A Chain A, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
pdb|2H2U|B Chain B, Crystal Structure Of The E130y Mutant Of Human Soluble
Calcium-Activated Nucleotidase (Scan) With Calcium Ion
Length = 339
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 101/145 (69%)
Query: 177 IVENNMVIPWVVLMDGNGQSPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMA 236
+ N V + L G P GY+IHES WS+ QRWFFLPRR+S +Y E DER
Sbjct: 195 VDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTLQRWFFLPRRASQERYSEKDDERKG 254
Query: 237 TNVLLSTDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITA 296
N+LLS +F ++ V+++G V+PTHG+SSFKF+P T D++IVALKSEED GR A+YI A
Sbjct: 255 ANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKSEEDSGRVASYIMA 314
Query: 297 FTLAGTILVPETKIADYKYEGLEFI 321
FTL G L+PETKI KYEG+EFI
Sbjct: 315 FTLDGRFLLPETKIGSVKYEGIEFI 339
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 12/127 (9%)
Query: 85 YNNTYPLTPPVQTAQGIQYRIA-----------PDNKSWLSYFKKGYLLWNPTFDQISII 133
YN+TYPL+PP +T GI+YRIA + +W SY KKGYL + + D++++
Sbjct: 25 YNDTYPLSPPQRTPAGIRYRIAVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 84
Query: 134 WDSEKPTVLKSGYGLNGRGMELSELVVFDGKLLTVDDRTGIVYIVENNMVIPWVVLMDGN 193
WD + VL+S GRGMELS+L+VF+GKL +VDDRTG+VY +E + +PWV+L DG+
Sbjct: 85 WDKDH-GVLESHLAYKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEGSKAVPWVILSDGD 143
Query: 194 GQSPKGY 200
G KG+
Sbjct: 144 GTVEKGF 150
>pdb|1S18|A Chain A, Structure And Protein Design Of Human Apyrase
pdb|1S18|B Chain B, Structure And Protein Design Of Human Apyrase
pdb|1S1D|A Chain A, Structure And Protein Design Of Human Apyrase
pdb|1S1D|B Chain B, Structure And Protein Design Of Human Apyrase
Length = 331
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/141 (56%), Positives = 100/141 (70%)
Query: 181 NMVIPWVVLMDGNGQSPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVL 240
N V + L G P GY+IHES WS+ QRWFFLPRR+S +Y E DER N+L
Sbjct: 191 NWVSNYNALRAAAGIQPPGYLIHESACWSDTLQRWFFLPRRASQERYSEKDDERKGANLL 250
Query: 241 LSTDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITAFTLA 300
LS +F ++ V+++G V+PTHG+SSFKF+P T D++IVALKSEED GR A+YI AFTL
Sbjct: 251 LSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKSEEDSGRVASYIMAFTLD 310
Query: 301 GTILVPETKIADYKYEGLEFI 321
G L+PETKI KYEG+EFI
Sbjct: 311 GRFLLPETKIGSVKYEGIEFI 331
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 12/127 (9%)
Query: 85 YNNTYPLTPPVQTAQGIQYRIA-----------PDNKSWLSYFKKGYLLWNPTFDQISII 133
YN+TYPL+PP +T GI+YRIA + +W SY KKGYL + + D++++
Sbjct: 17 YNDTYPLSPPQRTPAGIRYRIAVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 76
Query: 134 WDSEKPTVLKSGYGLNGRGMELSELVVFDGKLLTVDDRTGIVYIVENNMVIPWVVLMDGN 193
WD + VL+S GRGMELS+L+VF+GKL +VDDRTG+VY +E + +PWV+L DG+
Sbjct: 77 WDKDH-GVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEGSKAVPWVILSDGD 135
Query: 194 GQSPKGY 200
G KG+
Sbjct: 136 GTVEKGF 142
>pdb|2H2N|A Chain A, Crystal Structure Of Human Soluble Calcium-activated
Nucleotidase (scan) With Calcium Ion
pdb|2H2N|B Chain B, Crystal Structure Of Human Soluble Calcium-activated
Nucleotidase (scan) With Calcium Ion
Length = 339
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 101/145 (69%)
Query: 177 IVENNMVIPWVVLMDGNGQSPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMA 236
+ N V + L G P GY+IHES WS+ QRWFFLPRR+S +Y E DER
Sbjct: 195 VDHENWVSNYNALRAAAGIQPPGYLIHESACWSDTLQRWFFLPRRASQERYSEKDDERKG 254
Query: 237 TNVLLSTDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITA 296
N+LLS +F ++ V+++G V+PTHG+SSFKF+P T D++IVALKSEED GR A+YI A
Sbjct: 255 ANLLLSASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKSEEDSGRVASYIMA 314
Query: 297 FTLAGTILVPETKIADYKYEGLEFI 321
FTL G L+PETKI KYEG+EFI
Sbjct: 315 FTLDGRFLLPETKIGSVKYEGIEFI 339
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 12/127 (9%)
Query: 85 YNNTYPLTPPVQTAQGIQYRIA-----------PDNKSWLSYFKKGYLLWNPTFDQISII 133
YN+TYPL+PP +T GI+YRIA + +W SY KKGYL + + D++++
Sbjct: 25 YNDTYPLSPPQRTPAGIRYRIAVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 84
Query: 134 WDSEKPTVLKSGYGLNGRGMELSELVVFDGKLLTVDDRTGIVYIVENNMVIPWVVLMDGN 193
WD + VL+S GRGMELS+L+VF+GKL +VDDRTG+VY +E + +PWV+L DG+
Sbjct: 85 WDKDH-GVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEGSKAVPWVILSDGD 143
Query: 194 GQSPKGY 200
G KG+
Sbjct: 144 GTVEKGF 150
>pdb|3MB8|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase From
Toxoplasma Gondii In Complex With Immucillin-H
pdb|3MB8|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase From
Toxoplasma Gondii In Complex With Immucillin-H
Length = 279
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 117 KKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGRGMELSELVVFDGKLL 166
KK L +N + +++DS+ TV+ G G G + + EL K++
Sbjct: 42 KKQELAYNREYRSFRVVYDSQPITVISHGIGCPGTSIAIEELAYLGAKVI 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,379,379
Number of Sequences: 62578
Number of extensions: 443740
Number of successful extensions: 955
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 21
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)