Query psy4616
Match_columns 321
No_of_seqs 109 out of 133
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 21:26:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06079 Apyrase: Apyrase; In 100.0 3E-102 7E-107 733.1 23.1 212 109-321 11-291 (291)
2 PTZ00486 apyrase Superfamily; 100.0 3E-101 7E-106 740.3 29.9 232 83-321 40-352 (352)
3 KOG4494|consensus 100.0 2.5E-92 5.4E-97 666.0 18.9 273 29-321 1-352 (352)
4 PF06977 SdiA-regulated: SdiA- 95.3 0.1 2.2E-06 49.3 8.8 145 153-320 22-229 (248)
5 PLN03215 ascorbic acid mannose 66.6 7.9 0.00017 39.2 4.4 30 151-181 198-227 (373)
6 PF04584 Pox_A28: Poxvirus A28 60.3 9 0.00019 34.2 3.0 66 33-118 4-78 (140)
7 cd01238 PH_Tec Tec pleckstrin 50.4 30 0.00065 28.2 4.4 33 199-232 4-41 (106)
8 cd01233 Unc104 Unc-104 pleckst 49.8 17 0.00037 29.1 2.9 24 198-221 5-28 (100)
9 KOG0930|consensus 48.8 40 0.00087 33.9 5.7 79 199-287 264-344 (395)
10 PF01249 Ribosomal_S21e: Ribos 45.8 5 0.00011 32.8 -0.8 31 217-261 12-42 (81)
11 PF01011 PQQ: PQQ enzyme repea 44.4 14 0.0003 24.8 1.4 19 160-178 7-25 (38)
12 PF13594 Amidohydro_5: Amidohy 44.1 20 0.00043 26.5 2.3 29 275-306 5-34 (68)
13 cd01252 PH_cytohesin Cytohesin 42.4 30 0.00064 28.6 3.3 30 199-229 4-33 (125)
14 PF04312 DUF460: Protein of un 40.5 53 0.0011 29.3 4.7 36 266-306 19-57 (138)
15 PF14120 YhzD: YhzD-like prote 37.6 17 0.00036 28.5 1.0 18 292-309 4-21 (61)
16 PF12273 RCR: Chitin synthesis 36.0 49 0.0011 28.0 3.7 37 37-77 5-41 (130)
17 cd01265 PH_PARIS-1 PARIS-1 ple 35.3 86 0.0019 25.0 4.8 34 199-232 3-39 (95)
18 PF03306 AAL_decarboxy: Alpha- 32.9 57 0.0012 30.7 3.9 88 157-263 41-132 (220)
19 smart00564 PQQ beta-propeller 31.4 36 0.00078 21.2 1.7 14 162-175 15-28 (33)
20 cd01235 PH_SETbf Set binding f 31.1 97 0.0021 23.9 4.4 32 199-230 3-35 (101)
21 TIGR01252 acetolac_decarb alph 30.8 1.1E+02 0.0023 29.2 5.4 81 157-256 43-126 (232)
22 PF00169 PH: PH domain; Inter 28.6 43 0.00093 24.6 1.9 21 199-219 5-25 (104)
23 cd01245 PH_RasGAP_CG5898 RAS G 28.5 61 0.0013 26.8 3.0 30 198-227 2-34 (98)
24 PF02897 Peptidase_S9_N: Proly 28.5 5.5E+02 0.012 24.8 15.5 74 236-309 287-367 (414)
25 cd01234 PH_CADPS CADPS (Ca2+-d 27.6 32 0.00069 29.9 1.2 34 199-233 6-45 (117)
26 PF11776 DUF3315: Domain of un 25.6 1.1E+02 0.0024 22.6 3.6 31 145-178 22-52 (52)
27 KOG1310|consensus 25.2 45 0.00097 36.3 2.0 29 265-300 97-125 (758)
28 PF06200 tify: tify domain; I 23.9 66 0.0014 22.5 2.0 14 159-172 10-23 (36)
29 COG3701 TrbF Type IV secretory 23.4 75 0.0016 30.5 2.9 37 162-198 47-83 (228)
30 PHA02566 alt ADP-ribosyltransf 22.5 94 0.002 34.2 3.8 94 157-267 541-653 (684)
31 cd04483 hOBFC1_like hOBFC1_lik 22.3 48 0.001 26.8 1.2 12 164-175 16-27 (92)
32 cd01264 PH_melted Melted pleck 21.7 55 0.0012 27.3 1.5 23 199-221 4-29 (101)
33 PF15012 DUF4519: Domain of un 20.6 16 0.00034 28.1 -1.7 30 28-57 23-52 (56)
34 PF15097 Ig_J_chain: Immunoglo 20.5 75 0.0016 28.1 2.1 21 266-286 18-48 (134)
No 1
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=100.00 E-value=3.2e-102 Score=733.10 Aligned_cols=212 Identities=58% Similarity=1.058 Sum_probs=182.7
Q ss_pred CCceEEEEEEeEEEEcCCCCeEEEEecCCCCeeEEecCCCCCccceeeceeeeCCEEEeecCCceeEEEEecCeEeeEEE
Q psy4616 109 NKSWLSYFKKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGRGMELSELVVFDGKLLTVDDRTGIVYIVENNMVIPWVV 188 (321)
Q Consensus 109 ~~~w~S~lk~G~L~~~~~~~~~sv~wd~~~~~~l~S~~~~kGRGMELSELvvFngkLys~DDRTGiVyeI~~~~~iPwvI 188 (321)
+++|+||+++|+|++++++.+++|+||+ ++.+|+|++|++|||||||||++||||||||||||||||||+++++|||||
T Consensus 11 ~~~w~S~~~~G~L~~~~~~~~~~v~wd~-~~~~l~s~~~~~GRGmELSELv~FngkLys~DDrTGiVyeI~~~~~vPwvi 89 (291)
T PF06079_consen 11 KNTWRSYLKKGYLTFSGDKYTVSVEWDE-EPFELKSHLNEKGRGMELSELVVFNGKLYSFDDRTGIVYEIKGDKAVPWVI 89 (291)
T ss_dssp TT-EEEEEEEEEEEEETTSS-EEEEE-S-S-EEEEESEEETTB---EEEEEEETTEEEEEETTT-EEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeEEEECCCccEEEEEECC-CceEEeccccccCCCceeeeeeeECCEEeeeeCCCceEEEEeCCceeceEE
Confidence 5899999999999999999999999997 599999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcc--------------------------------------------------------------------ce
Q psy4616 189 LMDGNGQSPK--------------------------------------------------------------------GY 200 (321)
Q Consensus 189 L~dGdG~~~k--------------------------------------------------------------------GY 200 (321)
|+||||+++| ||
T Consensus 90 L~dGdG~~~kGfK~EWaTVKd~~LyvGs~Gkewt~~~G~~~n~n~~wVK~I~~~G~V~h~dW~~~Y~~lr~A~gi~~PGY 169 (291)
T PF06079_consen 90 LSDGDGNTSKGFKAEWATVKDDKLYVGSIGKEWTTSDGEIVNRNPMWVKVISPEGEVRHEDWVDNYKKLRKAAGISSPGY 169 (291)
T ss_dssp -BSTTTTESSB----EEEEETTEEEEE--SS-EE-TTS-EEESGGGEEEEEETTS-EEEEE-HHHHHHHHHHTT--TT-E
T ss_pred EeCCCCCccccccceeeEEeCCeeeeccCCCceECCCceEecCCceEEEEeCCCCcEEEechHHHHHHHHHHhCCCCCce
Confidence 9999999998 99
Q ss_pred EEEeeccccccccceeeeccccCccCCcchhhhhcccceEEEecCCCCceEEEEeC-CcCCCccceeeeEcCCCCCeEEE
Q psy4616 201 MIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIG-EVIPTHGYSSFKFLPGTKDRVIV 279 (321)
Q Consensus 201 miHEav~WS~~~k~WfFLPRR~S~e~Yde~~DE~rG~N~li~adedF~~i~v~~Ig-~~~P~~GFSSFKFvPgT~D~iIv 279 (321)
||||||+||++||+|||||||||+|+|||++||+||||+||+|||||++|+|++|| +++|+||||||||||+|+|+|||
T Consensus 170 ~iHEav~WS~~~~~WfFLPRr~S~e~Y~e~~DE~~G~N~li~a~edF~~i~v~~ig~~~~p~~GFSsFKFvP~t~d~iIv 249 (291)
T PF06079_consen 170 MIHEAVVWSDIHKKWFFLPRRCSKEPYDETADERRGCNLLISADEDFSDIKVIRIGEQLDPTRGFSSFKFVPGTNDQIIV 249 (291)
T ss_dssp EE-S-EEEETTTTEEEE--SEEESS---HHHHTT-B--EEEEE-TTSSSEEEEE-S----TTEEEEEEEE-TTSTT-EEE
T ss_pred EEEeeeeeccccCEEEEeccccccccccchhhhhcCccEEEEeccCcceeEEEEeCCccCccccceeEEEecCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999999999999999
Q ss_pred EEeeeecCCeeeEEEEEEeeCceEeecccccCceeeeeeeeC
Q psy4616 280 ALKSEEDKGRTATYITAFTLAGTILVPETKIADYKYEGLEFI 321 (321)
Q Consensus 280 ALKSeE~~g~~aTyItvF~i~G~iLLpet~I~~~KyEGieFi 321 (321)
||||+|.+|+++|||||||+||+||||||+|+++||||||||
T Consensus 250 alKs~E~~g~~~tyitvf~i~G~iLl~e~~i~~~K~EGiefi 291 (291)
T PF06079_consen 250 ALKSEEDNGKTATYITVFDIDGKILLPETKIGDYKYEGIEFI 291 (291)
T ss_dssp EEEEEEETTEEEEEEEEEETTSEEEEEEEEEESSEEEEEEEE
T ss_pred EEeEEecCCceEEEEEEEEeCCeEEccccCcCCcceeeEEEC
Confidence 999999999999999999999999999999999999999996
No 2
>PTZ00486 apyrase Superfamily; Provisional
Probab=100.00 E-value=3.3e-101 Score=740.28 Aligned_cols=232 Identities=40% Similarity=0.648 Sum_probs=223.8
Q ss_pred cccccCCCCCCceecCCceEEEEEE-----------eCCceEEEEEEeEEEEcCCCCeEEEEecCCCCeeEEecCCCCCc
Q psy4616 83 LMYNNTYPLTPPVQTAQGIQYRIAP-----------DNKSWLSYFKKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGR 151 (321)
Q Consensus 83 ~~yN~tYPlt~p~~~~~g~~yriai-----------~~~~w~S~lk~G~L~~~~~~~~~sv~wd~~~~~~l~S~~~~kGR 151 (321)
.+||++||+++|..+ .||||+ ++++|+|++++|+|++++++.+|+++||+ ..+|+|++|+|||
T Consensus 40 ~~~~~~y~~~~~~~~----~~~iaiIaDlD~~S~~~~~~~w~S~~~~G~L~~~~~~~~~~~~~~~--~~~l~s~~~~~gR 113 (352)
T PTZ00486 40 VLKMSNYRSYNKKSP----LFRVALVADLDKASKDKEGKKWRSKVIKGTIFRQGNGWSFRESEDE--SFELQSGLNEGGR 113 (352)
T ss_pred CcccccccccCCccc----eeeEEEEecCchhccccCCCceEEEEEEEEEEEcCCCceEEEeecC--CeEEeeccCCCCC
Confidence 359999999999744 899999 27899999999999999998899999995 7999999999999
Q ss_pred cceeeceeeeCCEEEeecCCceeEEEEe--cCeEeeEEEEeCCCCCCcc-------------------------------
Q psy4616 152 GMELSELVVFDGKLLTVDDRTGIVYIVE--NNMVIPWVVLMDGNGQSPK------------------------------- 198 (321)
Q Consensus 152 GMELSELvvFngkLys~DDRTGiVyeI~--~~~~iPwvIL~dGdG~~~k------------------------------- 198 (321)
|||||||++||||||+||||||+||||+ ++++||||||+||||+++|
T Consensus 114 GmELSELv~FngkLys~DDrTGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs~Gkewtt~~G~~~ 193 (352)
T PTZ00486 114 GMELSELVSFNGKLYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGSIGKEFTTPNGDIL 193 (352)
T ss_pred CcchhhhheeCCEEEEEeCCceEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEecccceeEcCCCcEe
Confidence 9999999999999999999999999995 6689999999999999998
Q ss_pred -------------------------------------ceEEEeeccccccccceeeeccccCccCCcchhhhhcccceEE
Q psy4616 199 -------------------------------------GYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLL 241 (321)
Q Consensus 199 -------------------------------------GYmiHEav~WS~~~k~WfFLPRR~S~e~Yde~~DE~rG~N~li 241 (321)
||||||||+||+.|+||||||||||+|+|||++||+||||+||
T Consensus 194 n~np~wVk~I~~~G~v~~~nW~~~Y~~lr~A~gi~~pGY~iHEAv~WS~~~~kW~FlPRr~S~e~Yde~~DE~~G~N~ii 273 (352)
T PTZ00486 194 NRNPMYIKKIDKNGKVEVVNWSNVYNSIRNALGISYPGYIIHEAVTYSNLLRKWYFLPRRVSNEPYDEEKDEYRGSNYII 273 (352)
T ss_pred cCCceEEEEECCCCcEEEechHHHHHHHHHHcCCCCCccEEEEeEeeehhcCEEEEeccccCcccccchhhhhcCCcEEE
Confidence 9999999999999999999999999999999999999999999
Q ss_pred EecCCCCceEEEEeCCcCCCccceeeeEcCCCCCeEEEEEeeeecCCeeeEEEEEEeeCceEeecccccCceeeeeeeeC
Q psy4616 242 STDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITAFTLAGTILVPETKIADYKYEGLEFI 321 (321)
Q Consensus 242 ~adedF~~i~v~~Ig~~~P~~GFSSFKFvPgT~D~iIvALKSeE~~g~~aTyItvF~i~G~iLLpet~I~~~KyEGieFi 321 (321)
+|||||++++|++||+.+|+||||||||||+| |++||||||+|.+|+++|||||||++|+||||||+|+++||||||||
T Consensus 274 ~~de~F~~i~vi~i~~~~p~~GFSSfKFiP~t-d~~IvALKs~E~~~~~~Tyitvf~i~GkvLl~e~~I~~~KyEGiEFi 352 (352)
T PTZ00486 274 ICDEDFQNPRVIKDPQYDPERGFSSIKFLPGN-ENIIVALKSVEVEDKQESYIGMFDINGKVLMKDKLIGKEKFEGIEFI 352 (352)
T ss_pred EecccccceEEEecCCCCCCccceeeEEcCCC-CCEEEEEEEEEcCCceEEEEEEEEeCCeEEccceEcCcccccceEeC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999997
No 3
>KOG4494|consensus
Probab=100.00 E-value=2.5e-92 Score=665.96 Aligned_cols=273 Identities=47% Similarity=0.831 Sum_probs=246.7
Q ss_pred ceEEEEehhhHHHHHHHHHHHHHhhhhcCCccCCCCCCCCCCCCcceeeecccccccccCCCCCCceecCCceEEEEEE-
Q psy4616 29 GTLRIQVQLMSLIAFAGLFALILCVYYSHSTYNHVPAGFGPYESNIYLKSLGKGLMYNNTYPLTPPVQTAQGIQYRIAP- 107 (321)
Q Consensus 29 ~t~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yN~tYPlt~p~~~~~g~~yriai- 107 (321)
+|.|++.||.++++|.++.+++ ++.+++ .+..|-.+.+ |+.=-+.+|.++++|..|||++
T Consensus 1 ~t~rfn~~~~~~l~~~~~~ail--~~~~sh---~~~~gr~~~~--------------~a~an~y~p~~~~~gi~y~i~li 61 (352)
T KOG4494|consen 1 MTQRFNSNFFNFLLFGFVTAIL--FYSGSH---FNKSGRQEEH--------------IAHANLYSPKKFDDGIEYRIALI 61 (352)
T ss_pred CCcccccchHHHHHHHHHHHHH--HHhhcc---CCCCCCCchh--------------hccccccCccccCCcceEEEEEE
Confidence 4789999999888888777777 444422 1111100111 1111244899999999999999
Q ss_pred --------eCCceEEEEEEeEEEEcCCCCeEEEEecCCCCeeEEecCCCCCccceeeceeeeCCEEEeecCCceeEEEEe
Q psy4616 108 --------DNKSWLSYFKKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGRGMELSELVVFDGKLLTVDDRTGIVYIVE 179 (321)
Q Consensus 108 --------~~~~w~S~lk~G~L~~~~~~~~~sv~wd~~~~~~l~S~~~~kGRGMELSELvvFngkLys~DDRTGiVyeI~ 179 (321)
..++|+||+++|+|+.+.+...+.|+||++.+ .+.|++|.||||||||||++||||||++|||||+||+|.
T Consensus 62 ~dld~~sk~~~~w~s~~~kg~l~~s~~~~~i~i~~dk~~~-~~~s~la~~gr~mEls~l~~fng~l~s~ddrtGliyqi~ 140 (352)
T KOG4494|consen 62 ADLDTDSKDGKTWKSYLKKGYLTVSADHKHADIHWDKDSE-VLESNIAAKGRGMELSDLAVFNGKLYSIDDRTGLIYQIS 140 (352)
T ss_pred ecCCCChhhhhhHhhhhheeeeeeccccceEEEEeccCcc-hhhhhhhcCCCCcchhhhhhccceeeeecccceeEEEee
Confidence 26899999999999999999999999998655 999999999999999999999999999999999999999
Q ss_pred cCeEeeEEEEeCCCCCCcc-------------------------------------------------------------
Q psy4616 180 NNMVIPWVVLMDGNGQSPK------------------------------------------------------------- 198 (321)
Q Consensus 180 ~~~~iPwvIL~dGdG~~~k------------------------------------------------------------- 198 (321)
+++++|||||+||||+..|
T Consensus 141 ~kk~~Pwvilndg~g~~~kgfk~ew~~vk~~~L~vg~LgkewtTt~g~~~n~~pm~Vk~v~~~g~v~h~nw~d~~~~~r~ 220 (352)
T KOG4494|consen 141 DKKALPWVILNDGDGNVVKGFKAEWITVKDTELYVGGLGKEWTTTDGDYVNDNPMWVKHVSAHGAVHHENWVDNYIRLRR 220 (352)
T ss_pred cCCCCceEEEEcCCCceeecceeEEEEEecceEEecccccccccccceeecCCceEEEEEeccceEEeeechhhHHhhhh
Confidence 9999999999999999998
Q ss_pred -------ceEEEeeccccccccceeeeccccCccCCcchhhhhcccceEEEecCCCCceEEEEeCCcCCCccceeeeEcC
Q psy4616 199 -------GYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGEVIPTHGYSSFKFLP 271 (321)
Q Consensus 199 -------GYmiHEav~WS~~~k~WfFLPRR~S~e~Yde~~DE~rG~N~li~adedF~~i~v~~Ig~~~P~~GFSSFKFvP 271 (321)
|||||||++||+.+++|||||||||.|+|+|+.||+||||+|++|+|+|+|++|++||+++|+||||||||||
T Consensus 221 ~~~i~~pgymIhes~~ws~~~~rwfflprr~s~EKyset~dE~~GsN~Llsase~f~d~~vvrvg~~npt~GFSaFqFvP 300 (352)
T KOG4494|consen 221 AAGIEYPGYMIHESVQWSAIHRRWFFLPRRMSDEKYSETIDENRGSNVLLSASECFTDTEVVRVGKLNPTHGFSAFQFVP 300 (352)
T ss_pred cccCcCchhhHHHHHHhHHhhCceEEEEEeccchhcchhhhhccCccEEEecCccccceeEEEecCcCCCCCceeeEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeeeecCCe-eeEEEEEEeeCceEeeccccc-CceeeeeeeeC
Q psy4616 272 GTKDRVIVALKSEEDKGR-TATYITAFTLAGTILVPETKI-ADYKYEGLEFI 321 (321)
Q Consensus 272 gT~D~iIvALKSeE~~g~-~aTyItvF~i~G~iLLpet~I-~~~KyEGieFi 321 (321)
||+|||||||||||.+|+ +||||||||+||++|||||+| +++|||||||+
T Consensus 301 gT~d~iIVALKseE~~gkp~At~itvF~idG~viL~e~~le~~vKYEGiefa 352 (352)
T KOG4494|consen 301 GTDDQIIVALKSEEIPGKPVATYITVFDIDGTVILPETELEKNVKYEGIEFA 352 (352)
T ss_pred CCCCeEEEEEeccccCCCcceEEEEEEEecCeEEcchhccCCcccccceeeC
Confidence 999999999999999999 999999999999999999999 78999999996
No 4
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.29 E-value=0.1 Score=49.34 Aligned_cols=145 Identities=20% Similarity=0.293 Sum_probs=74.4
Q ss_pred ceeeceeee--CCEEEeecCCceeEEEEe-cCeEeeEEEEeCCCCCCcc-------------------------------
Q psy4616 153 MELSELVVF--DGKLLTVDDRTGIVYIVE-NNMVIPWVVLMDGNGQSPK------------------------------- 198 (321)
Q Consensus 153 MELSELvvF--ngkLys~DDRTGiVyeI~-~~~~iPwvIL~dGdG~~~k------------------------------- 198 (321)
-|+|-|.+- +++|+++-|..|.||++. +++++.+ |=-+|.|+.+.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~-i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRR-IPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEE-EE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEE-EeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 367777776 478888888888888883 3455544 43455665554
Q ss_pred ----------ceE-E----EeeccccccccceeeeccccCccCCcchhhhhcccceEEEecCCCCc--eEEEEeC----C
Q psy4616 199 ----------GYM-I----HESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTN--VMVTYIG----E 257 (321)
Q Consensus 199 ----------GYm-i----HEav~WS~~~k~WfFLPRR~S~e~Yde~~DE~rG~N~li~adedF~~--i~v~~Ig----~ 257 (321)
|.- . -|.++|++..++.|.. +|+ --..|...+-.+.. +.+.... .
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-----kE~---------~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-----KER---------KPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEE-----EES---------SSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEE-----eCC---------CChhhEEEccccCccceeeccccccccc
Confidence 111 0 1999999999999986 222 11223333332221 1121111 1
Q ss_pred cCCCccceeeeEcCCCCCeEEEEEeeeecCCeeeEEEEEEeeCceEeecccccCc--------eeeeeeee
Q psy4616 258 VIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITAFTLAGTILVPETKIAD--------YKYEGLEF 320 (321)
Q Consensus 258 ~~P~~GFSSFKFvPgT~D~iIvALKSeE~~g~~aTyItvF~i~G~iLLpet~I~~--------~KyEGieF 320 (321)
....+-+|+..|-|.|++ +.+|..+. --+..+|.+|+++=--..-.+ -+-|||.|
T Consensus 167 ~~~~~d~S~l~~~p~t~~--lliLS~es------~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~ 229 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGH--LLILSDES------RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAF 229 (248)
T ss_dssp T--SS---EEEEETTTTE--EEEEETTT------TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE
T ss_pred cceeccccceEEcCCCCe--EEEEECCC------CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEE
Confidence 224556899999999876 45564331 345778888987532111111 46899886
No 5
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=66.64 E-value=7.9 Score=39.18 Aligned_cols=30 Identities=30% Similarity=0.688 Sum_probs=25.0
Q ss_pred ccceeeceeeeCCEEEeecCCceeEEEEecC
Q psy4616 151 RGMELSELVVFDGKLLTVDDRTGIVYIVENN 181 (321)
Q Consensus 151 RGMELSELvvFngkLys~DDRTGiVyeI~~~ 181 (321)
-+-..++++.|+||+|++| ++|.+|.|..+
T Consensus 198 ~~~~~~DIi~~kGkfYAvD-~~G~l~~i~~~ 227 (373)
T PLN03215 198 MGYHFSDIIVHKGQTYALD-SIGIVYWINSD 227 (373)
T ss_pred CCceeeEEEEECCEEEEEc-CCCeEEEEecC
Confidence 4556899999999999995 57999999744
No 6
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=60.31 E-value=9 Score=34.23 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=38.1
Q ss_pred EEehhhHHHHHHHHHHHHHhhhhcCCccCCCCCCCCCCCCcceeeecccccccccCCCCCCceecCCceEEEEEE-----
Q psy4616 33 IQVQLMSLIAFAGLFALILCVYYSHSTYNHVPAGFGPYESNIYLKSLGKGLMYNNTYPLTPPVQTAQGIQYRIAP----- 107 (321)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yN~tYPlt~p~~~~~g~~yriai----- 107 (321)
+++-+++++..++-++++++|.++.--.++ ..||++|.--.=-++.+|....=-|
T Consensus 4 vsvf~ii~at~aic~i~fQ~y~iYeNYdnI--------------------~EFN~~~~~LEYskt~g~~~iDr~V~DPND 63 (140)
T PF04584_consen 4 VSVFFIILATAAICFILFQLYYIYENYDNI--------------------KEFNDAHSALEYSKTIGGNYIDRRVFDPND 63 (140)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHhhhHH--------------------HHHHhhccceeEeecCCCccccceeeCCCC
Confidence 355566666777777777777666221222 3488888655545555554322222
Q ss_pred ---e-CCceEEEEEE
Q psy4616 108 ---D-NKSWLSYFKK 118 (321)
Q Consensus 108 ---~-~~~w~S~lk~ 118 (321)
| +.+||.....
T Consensus 64 ~~~DvkqKWRCv~~~ 78 (140)
T PF04584_consen 64 EVYDVKQKWRCVKYN 78 (140)
T ss_pred cccChhhceEEEeeC
Confidence 4 6788877543
No 7
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=50.40 E-value=30 Score=28.19 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=20.7
Q ss_pred ceEEEee---cccc--ccccceeeeccccCccCCcchhh
Q psy4616 199 GYMIHES---GVWS--EYHQRWFFLPRRSSHFKYDEVTD 232 (321)
Q Consensus 199 GYmiHEa---v~WS--~~~k~WfFLPRR~S~e~Yde~~D 232 (321)
|||+.=+ -.++ ..++|||.| +...-.-|.+..|
T Consensus 4 g~l~Kr~~~~~~~~~~nwKkRwFvL-~~~~L~Yyk~~~~ 41 (106)
T cd01238 4 SILVKRSQQKKKTSPLNYKERLFVL-TKSKLSYYEGDFE 41 (106)
T ss_pred eeeeeeccCCCCCCCCCceeEEEEE-cCCEEEEECCCcc
Confidence 7888753 3455 789999999 4333334454444
No 8
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=49.82 E-value=17 Score=29.12 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred cceEEEeeccccccccceeeeccc
Q psy4616 198 KGYMIHESGVWSEYHQRWFFLPRR 221 (321)
Q Consensus 198 kGYmiHEav~WS~~~k~WfFLPRR 221 (321)
+||+......+..+++|||.|=+.
T Consensus 5 ~G~L~Kkg~~~k~WkkRwfvL~~~ 28 (100)
T cd01233 5 KGYLNFPEETNSGWTRRFVVVRRP 28 (100)
T ss_pred eEEEEeeCCCCCCcEEEEEEEECC
Confidence 399999988899999999999763
No 9
>KOG0930|consensus
Probab=48.82 E-value=40 Score=33.95 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=50.5
Q ss_pred ceEEEeec-cccccccceeeeccccCccCCcch-hhhhcccceEEEecCCCCceEEEEeCCcCCCccceeeeEcCCCCCe
Q psy4616 199 GYMIHESG-VWSEYHQRWFFLPRRSSHFKYDEV-TDERMATNVLLSTDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDR 276 (321)
Q Consensus 199 GYmiHEav-~WS~~~k~WfFLPRR~S~e~Yde~-~DE~rG~N~li~adedF~~i~v~~Ig~~~P~~GFSSFKFvPgT~D~ 276 (321)
|++..-+. .=-.+++|||.|.--|-- -|+-+ .-|-|| ||. =|+. .+.+| -+|.+-|-==-|.|....|
T Consensus 264 GWLlKlgg~rvktWKrRWFiLtdNCLY-YFe~tTDKEPrG---IIp-LeNl---sir~V--edP~kP~cfEly~ps~~gq 333 (395)
T KOG0930|consen 264 GWLLKLGGNRVKTWKRRWFILTDNCLY-YFEYTTDKEPRG---IIP-LENL---SIREV--EDPKKPNCFELYIPSNKGQ 333 (395)
T ss_pred ceeeeecCCcccchhheeEEeecceee-eeeeccCCCCCc---cee-cccc---ceeec--cCCCCCCeEEEecCCCCcC
Confidence 77766544 334458999999888743 22222 345676 232 2333 33333 3577777655789999999
Q ss_pred EEEEEeeeecC
Q psy4616 277 VIVALKSEEDK 287 (321)
Q Consensus 277 iIvALKSeE~~ 287 (321)
.|-|-||+-+.
T Consensus 334 ~IKACKTe~DG 344 (395)
T KOG0930|consen 334 VIKACKTEADG 344 (395)
T ss_pred eeeeecccCCc
Confidence 99999998753
No 10
>PF01249 Ribosomal_S21e: Ribosomal protein S21e ; InterPro: IPR001931 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. These proteins have 82 to 87 amino acids. The amino termini are all N alpha-acetylated. The N-terminal halves of the protein molecules are highly conserved in contrast to the carboxy-terminal parts [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3U5G_V 3U5C_V 3IZB_T 2XZN_Z 2XZM_Z 3IZ6_T.
Probab=45.84 E-value=5 Score=32.80 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=20.6
Q ss_pred eeccccCccCCcchhhhhcccceEEEecCCCCceEEEEeCCcCCC
Q psy4616 217 FLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGEVIPT 261 (321)
Q Consensus 217 FLPRR~S~e~Yde~~DE~rG~N~li~adedF~~i~v~~Ig~~~P~ 261 (321)
.+||||| .||-||.|.++ .+|++ .|+.+||.
T Consensus 12 YiPRKCS------------~TnriI~aKDH-aSvQi-nv~~vd~~ 42 (81)
T PF01249_consen 12 YIPRKCS------------ATNRIISAKDH-ASVQI-NVADVDEN 42 (81)
T ss_dssp SHHHCHT------------TTHHCHHTTST-TSEEE-EEEEE-SS
T ss_pred ecccccc------------ccCCccccCCc-eeEEE-EeeeecCc
Confidence 4899999 58889986654 55543 45566666
No 11
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=44.41 E-value=14 Score=24.78 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=15.7
Q ss_pred eeCCEEEeecCCceeEEEE
Q psy4616 160 VFDGKLLTVDDRTGIVYIV 178 (321)
Q Consensus 160 vFngkLys~DDRTGiVyeI 178 (321)
.++|.||.+|-+||-+-.-
T Consensus 7 ~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp TTTSEEEEEETTTTSEEEE
T ss_pred CCCCEEEEEECCCCCEEEe
Confidence 4689999999999987644
No 12
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=44.14 E-value=20 Score=26.52 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=19.0
Q ss_pred CeEEEEE-eeeecCCeeeEEEEEEeeCceEeec
Q psy4616 275 DRVIVAL-KSEEDKGRTATYITAFTLAGTILVP 306 (321)
Q Consensus 275 D~iIvAL-KSeE~~g~~aTyItvF~i~G~iLLp 306 (321)
|..|+++ +..+....-+. ++|..|++|||
T Consensus 5 ~g~I~~v~~~~~~~~~~~~---viD~~g~~v~P 34 (68)
T PF13594_consen 5 DGKIVAVGPDSELPADAAE---VIDAKGKYVMP 34 (68)
T ss_dssp TTEEEEEESSCCTTSTCCE---EEEETTCEEEE
T ss_pred CCEEEEeCCCCCCCCCCCE---EEECCCCEEeC
Confidence 4467888 33333332222 89999999999
No 13
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=42.43 E-value=30 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.723 Sum_probs=22.8
Q ss_pred ceEEEeeccccccccceeeeccccCccCCcc
Q psy4616 199 GYMIHESGVWSEYHQRWFFLPRRSSHFKYDE 229 (321)
Q Consensus 199 GYmiHEav~WS~~~k~WfFLPRR~S~e~Yde 229 (321)
|||.........+++|||.|-. .+---|..
T Consensus 4 G~L~K~~~~~~~WkkRwfvL~~-~~L~yyk~ 33 (125)
T cd01252 4 GWLLKQGGRVKTWKRRWFILTD-NCLYYFEY 33 (125)
T ss_pred EEEEEeCCCCCCeEeEEEEEEC-CEEEEEcC
Confidence 9999998888999999999943 33334443
No 14
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=40.49 E-value=53 Score=29.34 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=28.9
Q ss_pred eeeEcCC---CCCeEEEEEeeeecCCeeeEEEEEEeeCceEeec
Q psy4616 266 SFKFLPG---TKDRVIVALKSEEDKGRTATYITAFTLAGTILVP 306 (321)
Q Consensus 266 SFKFvPg---T~D~iIvALKSeE~~g~~aTyItvF~i~G~iLLp 306 (321)
.++|+|- +.+.+||.+ +-.++|=|.++|++|++|.=
T Consensus 19 ~i~F~pl~~~~~~~lIVGi-----DPG~ttgiAildL~G~~l~l 57 (138)
T PF04312_consen 19 KIEFVPLSKRSRRYLIVGI-----DPGTTTGIAILDLDGELLDL 57 (138)
T ss_pred ceeEccccccCCCCEEEEE-----CCCceeEEEEEecCCcEEEE
Confidence 6789994 578899887 44577888899999999874
No 15
>PF14120 YhzD: YhzD-like protein
Probab=37.56 E-value=17 Score=28.47 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=15.5
Q ss_pred EEEEEEeeCceEeecccc
Q psy4616 292 TYITAFTLAGTILVPETK 309 (321)
Q Consensus 292 TyItvF~i~G~iLLpet~ 309 (321)
=++|||+-+|+-||.|+-
T Consensus 4 Y~lTaFe~~Ge~lldE~f 21 (61)
T PF14120_consen 4 YFLTAFEKSGEKLLDETF 21 (61)
T ss_pred eEEEEECCCCchhhhcce
Confidence 368999999999998863
No 16
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=35.96 E-value=49 Score=27.98 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCccCCCCCCCCCCCCcceee
Q psy4616 37 LMSLIAFAGLFALILCVYYSHSTYNHVPAGFGPYESNIYLK 77 (321)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (321)
|+++|++++++++++ +...+.+.+. |-.|-..+.|..
T Consensus 5 ~~iii~~i~l~~~~~-~~~~rRR~r~---G~~P~~gt~w~~ 41 (130)
T PF12273_consen 5 FAIIIVAILLFLFLF-YCHNRRRRRR---GLQPIYGTRWMA 41 (130)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhhc---CCCCcCCceecC
Confidence 344444443333332 3334443343 445777788888
No 17
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.30 E-value=86 Score=24.96 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=23.4
Q ss_pred ceEEEeec--cccccccceeeecc-ccCccCCcchhh
Q psy4616 199 GYMIHESG--VWSEYHQRWFFLPR-RSSHFKYDEVTD 232 (321)
Q Consensus 199 GYmiHEav--~WS~~~k~WfFLPR-R~S~e~Yde~~D 232 (321)
|||..... .+-...+|||.|.. ++.---|.+..|
T Consensus 3 GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d 39 (95)
T cd01265 3 GYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD 39 (95)
T ss_pred ccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc
Confidence 89988765 36678999999984 444445554443
No 18
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=32.89 E-value=57 Score=30.71 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=51.5
Q ss_pred ceeeeCCEEEeecCCceeEEEEecCeEeeEEEEeCCCCCCccceEEEeeccccccccceeeeccccCccCCcchhhhhc-
Q psy4616 157 ELVVFDGKLLTVDDRTGIVYIVENNMVIPWVVLMDGNGQSPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERM- 235 (321)
Q Consensus 157 ELvvFngkLys~DDRTGiVyeI~~~~~iPwvIL~dGdG~~~kGYmiHEav~WS~~~k~WfFLPRR~S~e~Yde~~DE~r- 235 (321)
||++.+|+.|.++. +|-|.++.++...|+.....=+-.. =+-++...|.+...+..|+..
T Consensus 41 EmiilDG~~Yq~~~-dG~v~~~~~~~~tPFa~vt~f~~~~------------------~~~~~~~~~~~~l~~~l~~~~~ 101 (220)
T PF03306_consen 41 EMIILDGKAYQARA-DGSVREVDDDEKTPFAVVTFFEPDK------------------TFTLDSPMSKEELEAKLDELLP 101 (220)
T ss_dssp EEEEETTEEEEE-T-TS-EEE--S--EESSEEEE----SE------------------EEE-EEEEEHHHHHHHHHHHSS
T ss_pred eEEEECCEEEEEcC-CCeEEECCccccCceEEEEecCCce------------------EEccCCCCCHHHHHHHHHHhcC
Confidence 89999999999998 9999999988899987766411110 012456677777777777765
Q ss_pred ccce--EEEecCCCCceEEEEeCC-cCCCcc
Q psy4616 236 ATNV--LLSTDSNFTNVMVTYIGE-VIPTHG 263 (321)
Q Consensus 236 G~N~--li~adedF~~i~v~~Ig~-~~P~~G 263 (321)
+-|+ .|..+-.|+.++++.+.. ..|-..
T Consensus 102 ~~N~f~airi~G~F~~v~~Rsv~~qe~Py~~ 132 (220)
T PF03306_consen 102 SKNLFYAIRIDGTFSSVKTRSVPKQEKPYPP 132 (220)
T ss_dssp -TTS-EEEEEEEEEEEEEEE------SS---
T ss_pred CCceEEEEEEEEEECeEEEEeccCccCCCCC
Confidence 3364 566788899999988863 444443
No 19
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=31.38 E-value=36 Score=21.24 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=8.9
Q ss_pred CCEEEeecCCceeE
Q psy4616 162 DGKLLTVDDRTGIV 175 (321)
Q Consensus 162 ngkLys~DDRTGiV 175 (321)
+|+|+++|.+||-+
T Consensus 15 ~g~l~a~d~~~G~~ 28 (33)
T smart00564 15 DGTLYALDAKTGEI 28 (33)
T ss_pred CCEEEEEEcccCcE
Confidence 46666666666644
No 20
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=31.13 E-value=97 Score=23.93 Aligned_cols=32 Identities=25% Similarity=0.705 Sum_probs=23.7
Q ss_pred ceEEEeeccccccccceeeeccccCcc-CCcch
Q psy4616 199 GYMIHESGVWSEYHQRWFFLPRRSSHF-KYDEV 230 (321)
Q Consensus 199 GYmiHEav~WS~~~k~WfFLPRR~S~e-~Yde~ 230 (321)
|||.........+.+|||.|-..-... -|...
T Consensus 3 G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~ 35 (101)
T cd01235 3 GYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDF 35 (101)
T ss_pred EEEEEcCCCCCCccceEEEEECCCCEEEEecCC
Confidence 899999888899999999996543333 44433
No 21
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=30.81 E-value=1.1e+02 Score=29.22 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=56.1
Q ss_pred ceeeeCCEEEeecCCceeEEEEecCeEeeEEEEeCCCCCCccceEEEeeccccccccceeeeccccCccCCcchhhhhc-
Q psy4616 157 ELVVFDGKLLTVDDRTGIVYIVENNMVIPWVVLMDGNGQSPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERM- 235 (321)
Q Consensus 157 ELvvFngkLys~DDRTGiVyeI~~~~~iPwvIL~dGdG~~~kGYmiHEav~WS~~~k~WfFLPRR~S~e~Yde~~DE~r- 235 (321)
||++++|+.|-+ +-.|.|.++.++...|...... --.| ..+=++.-.|.+...+..|+..
T Consensus 43 EmiilDG~~Yq~-~sdG~v~~~~~~~~~PFA~vt~-------------f~~~-----~~~~~~~~~~~~~l~~~l~~~~p 103 (232)
T TIGR01252 43 ELIVLDGKAYQI-KSDGKAQELIEEDKTPFAVTTF-------------FDAD-----LKFKITENMDREQFEKKIEELFP 103 (232)
T ss_pred eEEEECCEEEEE-cCCCcEEECCccccCCeEEEEe-------------cCCc-----EEEecCCcCCHHHHHHHHHHhCC
Confidence 789999999988 4458888887777778755442 1111 2233445567777777777765
Q ss_pred ccceE--EEecCCCCceEEEEeC
Q psy4616 236 ATNVL--LSTDSNFTNVMVTYIG 256 (321)
Q Consensus 236 G~N~l--i~adedF~~i~v~~Ig 256 (321)
+.|+. |..+-.|+.++++.++
T Consensus 104 ~~N~f~Airi~G~F~~v~~Rsvp 126 (232)
T TIGR01252 104 GKNVFYAIRITGEFPKVQTRTVP 126 (232)
T ss_pred CCccEEEEEEEEEeceeEEEecC
Confidence 67865 5567789999999886
No 22
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=28.63 E-value=43 Score=24.56 Aligned_cols=21 Identities=24% Similarity=0.708 Sum_probs=19.0
Q ss_pred ceEEEeeccccccccceeeec
Q psy4616 199 GYMIHESGVWSEYHQRWFFLP 219 (321)
Q Consensus 199 GYmiHEav~WS~~~k~WfFLP 219 (321)
|||.+-+-.....+++||+|=
T Consensus 5 G~L~~~~~~~~~wk~r~~vL~ 25 (104)
T PF00169_consen 5 GWLLKKSSSRKKWKKRYFVLR 25 (104)
T ss_dssp EEEEEEESSSSSEEEEEEEEE
T ss_pred EEEEEECCCCCCeEEEEEEEE
Confidence 899998888899999999993
No 23
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=28.52 E-value=61 Score=26.84 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.5
Q ss_pred cceEEEeecc-ccccccceeeecccc--CccCC
Q psy4616 198 KGYMIHESGV-WSEYHQRWFFLPRRS--SHFKY 227 (321)
Q Consensus 198 kGYmiHEav~-WS~~~k~WfFLPRR~--S~e~Y 227 (321)
+||++-++.. +...+++||.|..+. |++-|
T Consensus 2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~y 34 (98)
T cd01245 2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESL 34 (98)
T ss_pred CCccccCCCCcccccceeEEEEecCCCCceEEE
Confidence 4899999887 999999999997533 44444
No 24
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=28.52 E-value=5.5e+02 Score=24.82 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=44.7
Q ss_pred ccceEEEecCCCCceEEEEeCCcCCCccceeeeEcCCCCCeEEEEEeeeec------CCeeeEEEEEEeeC-ceEeeccc
Q psy4616 236 ATNVLLSTDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEED------KGRTATYITAFTLA-GTILVPET 308 (321)
Q Consensus 236 G~N~li~adedF~~i~v~~Ig~~~P~~GFSSFKFvPgT~D~iIvALKSeE~------~g~~aTyItvF~i~-G~iLLpet 308 (321)
|--+.|.++.+..+-+++.+.--+|..+=.-.-++|..++..|..+---.. .....+-|.+++++ |+...+..
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence 667888999999999999987666666544446777776654433322110 01356788899999 87776544
Q ss_pred c
Q psy4616 309 K 309 (321)
Q Consensus 309 ~ 309 (321)
.
T Consensus 367 ~ 367 (414)
T PF02897_consen 367 L 367 (414)
T ss_dssp S
T ss_pred C
Confidence 3
No 25
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=27.64 E-value=32 Score=29.91 Aligned_cols=34 Identities=32% Similarity=0.754 Sum_probs=26.4
Q ss_pred ceEEEeec-cccccccceeeeccccCcc-----CCcchhhh
Q psy4616 199 GYMIHESG-VWSEYHQRWFFLPRRSSHF-----KYDEVTDE 233 (321)
Q Consensus 199 GYmiHEav-~WS~~~k~WfFLPRR~S~e-----~Yde~~DE 233 (321)
|||+-+.. .|-.++||||-|= -+|.= .|-|++-|
T Consensus 6 GyL~k~Gg~~~KkWKKRwFvL~-qvsQYtfamcsy~ekks~ 45 (117)
T cd01234 6 GYLYAIGKNVWKKWKKRFFVLV-QVSQYTFAMCSYREKKAE 45 (117)
T ss_pred EEEEeccchhhhhhheeEEEEE-chhHHHHHHHhhhhhcCC
Confidence 99999988 9999999999985 66653 35555444
No 26
>PF11776 DUF3315: Domain of unknown function (DUF3315); InterPro: IPR024572 This is a bacterial family of uncharacterised proteins, which include YohN from Escherichia coli K12.; PDB: 2L1S_A.
Probab=25.65 E-value=1.1e+02 Score=22.56 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=20.6
Q ss_pred cCCCCCccceeeceeeeCCEEEeecCCceeEEEE
Q psy4616 145 GYGLNGRGMELSELVVFDGKLLTVDDRTGIVYIV 178 (321)
Q Consensus 145 ~~~~kGRGMELSELvvFngkLys~DDRTGiVyeI 178 (321)
+|..-.|| .+=+-.||..+=+|..||+|.+|
T Consensus 22 ~L~~Pp~G---~~Wvrv~~dyvLv~~~tG~I~~V 52 (52)
T PF11776_consen 22 GLPAPPRG---YHWVRVGGDYVLVAIATGIIASV 52 (52)
T ss_dssp S-----TT---EEEEE-SSEEEEEETTT-BEEEE
T ss_pred CCCcCCCC---CEeEEECCeEEEEEcCCCeEEeC
Confidence 45566777 55678899999999999999986
No 27
>KOG1310|consensus
Probab=25.18 E-value=45 Score=36.26 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=20.6
Q ss_pred eeeeEcCCCCCeEEEEEeeeecCCeeeEEEEEEeeC
Q psy4616 265 SSFKFLPGTKDRVIVALKSEEDKGRTATYITAFTLA 300 (321)
Q Consensus 265 SSFKFvPgT~D~iIvALKSeE~~g~~aTyItvF~i~ 300 (321)
=|.||||.|+|+||+- |.--..|-+||++
T Consensus 97 FsvKFvP~tnnriv~s-------gAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 97 FSVKFVPYTNNRIVLS-------GAGDKLIKLFDLD 125 (758)
T ss_pred eEEeeeccCCCeEEEe-------ccCcceEEEEecc
Confidence 3689999999998652 2223566778876
No 28
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=23.86 E-value=66 Score=22.55 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=11.6
Q ss_pred eeeCCEEEeecCCc
Q psy4616 159 VVFDGKLLTVDDRT 172 (321)
Q Consensus 159 vvFngkLys~DDRT 172 (321)
+.|+|+.+.|||=+
T Consensus 10 IfY~G~V~Vfd~v~ 23 (36)
T PF06200_consen 10 IFYGGQVCVFDDVP 23 (36)
T ss_pred EEECCEEEEeCCCC
Confidence 57899999999744
No 29
>COG3701 TrbF Type IV secretory pathway, TrbF components [Intracellular trafficking and secretion]
Probab=23.45 E-value=75 Score=30.45 Aligned_cols=37 Identities=32% Similarity=0.533 Sum_probs=30.6
Q ss_pred CCEEEeecCCceeEEEEecCeEeeEEEEeCCCCCCcc
Q psy4616 162 DGKLLTVDDRTGIVYIVENNMVIPWVVLMDGNGQSPK 198 (321)
Q Consensus 162 ngkLys~DDRTGiVyeI~~~~~iPwvIL~dGdG~~~k 198 (321)
.|-+++.=--+|+||+-.+.+++|+|+=-||-|+...
T Consensus 47 g~l~la~~~~gg~vwqs~QskvvPyVvevD~~G~a~a 83 (228)
T COG3701 47 GGLTLALALAGGLVWQSAQSKVVPYVVEVDGLGQARA 83 (228)
T ss_pred HHHHHHHHHhccceeecccceEEeEEEEEcCCcceec
Confidence 4444455556799999999999999999999999876
No 30
>PHA02566 alt ADP-ribosyltransferase; Provisional
Probab=22.52 E-value=94 Score=34.19 Aligned_cols=94 Identities=29% Similarity=0.468 Sum_probs=58.5
Q ss_pred ceeeeCC---EEEeecCCceeEEEEecCeEeeEEEEeCCCCCCccceEEEeeccccc-cccceeeeccccCccCCcchhh
Q psy4616 157 ELVVFDG---KLLTVDDRTGIVYIVENNMVIPWVVLMDGNGQSPKGYMIHESGVWSE-YHQRWFFLPRRSSHFKYDEVTD 232 (321)
Q Consensus 157 ELvvFng---kLys~DDRTGiVyeI~~~~~iPwvIL~dGdG~~~kGYmiHEav~WS~-~~k~WfFLPRR~S~e~Yde~~D 232 (321)
++.+++| -..+.|+-+.+.|.|++...||-++ + | .||. -+..=+.|||-.- -++|++.+
T Consensus 541 s~~i~~~e~g~~~~~~~~~~vg~vI~ga~~VpvI~-P---G------------~ls~~~~EcEVILPRGt~-lkinkV~~ 603 (684)
T PHA02566 541 ELAVDKGEEGGTISANELAQVGFAIDGAEKVPVIY-P---G------------NLSEHPEEAEIILPRGLL-LKFNKVTD 603 (684)
T ss_pred cceeeccccccccCccceeEEEEEEEcCCCCCEEe-c---C------------CCCCCcccceEEecCCcE-EEEeehhh
Confidence 3455554 3556677788889888876777444 3 1 2343 3344588999643 23344332
Q ss_pred h----hcccceEEEec----CCCCceEEEEeC-------CcCCCccceee
Q psy4616 233 E----RMATNVLLSTD----SNFTNVMVTYIG-------EVIPTHGYSSF 267 (321)
Q Consensus 233 E----~rG~N~li~ad----edF~~i~v~~Ig-------~~~P~~GFSSF 267 (321)
- ..-+|++|-|. ..|..-+||..| ++.|-.|||||
T Consensus 604 a~~~~~s~~~~liea~~v~~sel~eseviYDGDhLMeTGEvk~m~gFssF 653 (684)
T PHA02566 604 ASMNDGSQNTYLIEAEVMSKSELDESEVIYDGDHLMETGEVKPMTGFSSF 653 (684)
T ss_pred hhcCCCccceEEEEEEecCHHHcCccceeecchhhhhccceEeccchHHH
Confidence 2 12458888886 345555588877 46799999998
No 31
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=22.30 E-value=48 Score=26.80 Aligned_cols=12 Identities=50% Similarity=0.670 Sum_probs=8.9
Q ss_pred EEEeecCCceeE
Q psy4616 164 KLLTVDDRTGIV 175 (321)
Q Consensus 164 kLys~DDRTGiV 175 (321)
-.|++||+||.|
T Consensus 16 ~~~tLdDgTG~I 27 (92)
T cd04483 16 YSFGVDDGTGVV 27 (92)
T ss_pred EEEEEecCCceE
Confidence 457888888854
No 32
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.71 E-value=55 Score=27.32 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.1
Q ss_pred ceEEEeec---cccccccceeeeccc
Q psy4616 199 GYMIHESG---VWSEYHQRWFFLPRR 221 (321)
Q Consensus 199 GYmiHEav---~WS~~~k~WfFLPRR 221 (321)
|||.-|.+ .+-..++|||-|-.-
T Consensus 4 G~l~k~~g~~r~~K~WkrRwF~L~~~ 29 (101)
T cd01264 4 GQLKEKKGRWRFIKRWKTRYFTLSGA 29 (101)
T ss_pred eEEeecCccceeeecceeEEEEEeCC
Confidence 89999999 788899999998743
No 33
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=20.59 E-value=16 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=20.4
Q ss_pred cceEEEEehhhHHHHHHHHHHHHHhhhhcC
Q psy4616 28 NGTLRIQVQLMSLIAFAGLFALILCVYYSH 57 (321)
Q Consensus 28 n~t~r~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (321)
|..+|-|+-.+.|..|++++++|.+|+|.+
T Consensus 23 ~~e~~~kv~tVVlP~l~~~~~~Ivv~vy~k 52 (56)
T PF15012_consen 23 MQEAQQKVFTVVLPTLAAVFLFIVVFVYLK 52 (56)
T ss_pred HHHHHHhheeEehhHHHHHHHHHhheeEEe
Confidence 334555666677888887888887777653
No 34
>PF15097 Ig_J_chain: Immunoglobulin J chain
Probab=20.46 E-value=75 Score=28.11 Aligned_cols=21 Identities=33% Similarity=0.729 Sum_probs=17.9
Q ss_pred eeeEcCCCCC----------eEEEEEeeeec
Q psy4616 266 SFKFLPGTKD----------RVIVALKSEED 286 (321)
Q Consensus 266 SFKFvPgT~D----------~iIvALKSeE~ 286 (321)
..||||..+| +|||.||+.|.
T Consensus 18 tsr~i~s~~dP~e~iveRNIRiiVpL~~ReN 48 (134)
T PF15097_consen 18 TSRIIPSKDDPNEDIVERNIRIIVPLNNREN 48 (134)
T ss_pred EeEEecCCCCCchhhhhhceEEEEEcccccc
Confidence 4688898876 79999999987
Done!