RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4616
         (321 letters)



>gnl|CDD|191443 pfam06079, Apyrase, Apyrase.  This family consists of several
           eukaryotic apyrase proteins (EC:3.6.1.5). The salivary
           apyrases of blood-feeding arthropods are nucleotide
           hydrolysing enzymes implicated in the inhibition of host
           platelet aggregation through the hydrolysis of
           extracellular adenosine diphosphate..
          Length = 292

 Score =  257 bits (658), Expect = 7e-85
 Identities = 117/287 (40%), Positives = 148/287 (51%), Gaps = 77/287 (26%)

Query: 108 DNKSWLSYFKKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGRGMELSELVVF------ 161
              +W SY KKGYL  N + D +S+ WD +    L S Y L GRGMELSELVVF      
Sbjct: 10  KKNTWTSYVKKGYLKVNGSKDTLSVKWD-KPNLHLFSKYALKGRGMELSELVVFNGKLYT 68

Query: 162 -------------DGKLL---------------------TVDDRTGIV------------ 175
                        DGKL+                     TV D    V            
Sbjct: 69  VDDRTGIVYEIKDDGKLIPWVILADGDGTVSKGFKAEWATVKDEKLYVGSLGKEWTTSDG 128

Query: 176 -YIVENNMVIPWVVLMDGNGQ-------------------SPKGYMIHESGVWSEYHQRW 215
            +   N M   WV ++  +G+                    P GY+IHE+  WS    +W
Sbjct: 129 VFENTNPM---WVKVIGKHGEVTHLNWVSNYKKLRNAMGIEPPGYLIHEAVNWSPRKNKW 185

Query: 216 FFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIG-EVIPTHGYSSFKFLPGTK 274
           FFLPRR S  KYDE  DER   N L++   +FT++ V  IG ++ PTHG+SSFKF+PGT 
Sbjct: 186 FFLPRRCSQEKYDETIDERRGCNKLITASEDFTDIKVIRIGGKLNPTHGFSSFKFIPGTN 245

Query: 275 DRVIVALKSEEDKGRTATYITAFTLAGTILVPETKIADYKYEGLEFI 321
           D++IVALK+EED G+TATYIT FT+ G +L+PETKI D KYEG+EFI
Sbjct: 246 DQIIVALKTEEDNGKTATYITVFTIDGKVLLPETKIGDVKYEGIEFI 292


>gnl|CDD|240436 PTZ00486, PTZ00486, apyrase Superfamily; Provisional.
          Length = 352

 Score =  151 bits (384), Expect = 3e-43
 Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

Query: 199 GYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGEV 258
           GY+IHE+  +S   ++W+FLPRR S+  YDE  DE   +N ++  D +F N  V    + 
Sbjct: 231 GYIIHEAVTYSNLLRKWYFLPRRVSNEPYDEEKDEYRGSNYIIICDEDFQNPRVIKDPQY 290

Query: 259 IPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITAFTLAGTILVPETKIADYKYEGL 318
            P  G+SS KFLPG  + +IVALKS E + +  +YI  F + G +L+ +  I   K+EG+
Sbjct: 291 DPERGFSSIKFLPGN-ENIIVALKSVEVEDKQESYIGMFDINGKVLMKDKLIGKEKFEGI 349

Query: 319 EFI 321
           EFI
Sbjct: 350 EFI 352



 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 54/165 (32%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 37  LMSLIAFAGLFALILCVYYSHSTYNHVPAGFGPYESNIYLKSLGKGLMYNNTYPLTPPVQ 96
           ++ LI  A L + +L +    S  N          SN           YN   PL     
Sbjct: 10  ILFLITIATLISFVLLIS-LLSIQNTPRYNGVLKMSNYRS--------YNKKSPLFRVAL 60

Query: 97  TAQGIQYRIAPDNKSWLSYFKKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGRGMELS 156
            A   +     + K W S   KG +             D  +   L+SG    GRGMELS
Sbjct: 61  VADLDKASKDKEGKKWRSKVIKGTIFRQGNGWSFRESED--ESFELQSGLNEGGRGMELS 118

Query: 157 ELVVFDGKLLTVDDRTGIVY--IVENNMVIPWVVLMDGNGQSPKG 199
           ELV F+GKL   DDRTGIVY   ++     P  +L DGNG S KG
Sbjct: 119 ELVSFNGKLYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNSDKG 163


>gnl|CDD|226837 COG4403, LcnDR2, Lantibiotic modifying enzyme [Defense mechanisms].
          Length = 963

 Score = 30.5 bits (69), Expect = 1.4
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 200 YMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGEVI 259
           ++I E+ ++  Y Q   F P       +     E+     L     N  + +V Y+ E++
Sbjct: 43  FVIGENELFRFYQQHINFEPFEIILLPFISDYLEKFEYEWLRKKGQNIFSSLVFYLEELL 102

Query: 260 PTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITAF 297
                     L     R    L+ E  + R   +IT F
Sbjct: 103 -YPLIHKTLVLEINIFRETGQLEGETPQERYKYFITKF 139


>gnl|CDD|226224 COG3701, TrbF, Type IV secretory pathway, TrbF components
           [Intracellular trafficking and secretion].
          Length = 228

 Score = 28.6 bits (64), Expect = 3.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 158 LVVFDGKLLTVDDRTGIVYIVENNMVIPWVVLMDGNGQ 195
            V   G  L +    G+V+    + V+P+VV +DG GQ
Sbjct: 43  FVGLGGLTLALALAGGLVWQSAQSKVVPYVVEVDGLGQ 80


>gnl|CDD|183235 PRK11618, PRK11618, inner membrane ABC transporter permease protein
           YjfF; Provisional.
          Length = 317

 Score = 28.4 bits (64), Expect = 5.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 144 SGYGLNGRGMELSEL--VVFDGKLLT 167
           +GY L   G+EL  +  VV  G LLT
Sbjct: 234 AGYALAAVGVELDAIAAVVIGGTLLT 259


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
           MsbA.  This family consists of a single polypeptide
           chain transporter in the ATP-binding cassette (ABC)
           transporter family, MsbA, which exports lipid A. It may
           also act in multidrug resistance. Lipid A, a part of
           lipopolysaccharide, is found in the outer leaflet of the
           outer membrane of most Gram-negative bacteria. Members
           of this family are restricted to the Proteobacteria
           (although lipid A is more broadly distributed) and often
           are clustered with lipid A biosynthesis genes [Cell
           envelope, Biosynthesis and degradation of surface
           polysaccharides and lipopolysaccharides, Transport and
           binding proteins, Other].
          Length = 571

 Score = 28.1 bits (63), Expect = 7.6
 Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 247 FTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRT--ATYITAFTL--AGT 302
           F NV   Y G   P     S    PG      VAL      G++     I  F    +G 
Sbjct: 333 FRNVTFRYPGRDRPALDSISLVIEPGE----TVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388

Query: 303 ILVPETKIADYKYEGL 318
           IL+    +ADY    L
Sbjct: 389 ILLDGHDLADYTLASL 404


>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP
           binding domain.  Carbamoyl-phosphate synthase catalyzes
           the ATP-dependent synthesis of carbamyl-phosphate from
           glutamine or ammonia and bicarbonate. This important
           enzyme initiates both the urea cycle and the
           biosynthesis of arginine and/or pyrimidines. The
           carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes
           is a heterodimer of a small and large chain. The small
           chain promotes the hydrolysis of glutamine to ammonia,
           which is used by the large chain to synthesise carbamoyl
           phosphate. See pfam00988. The small chain has a GATase
           domain in the carboxyl terminus. See pfam00117. The ATP
           binding domain (this one) has an ATP-grasp fold.
          Length = 211

 Score = 27.7 bits (62), Expect = 7.9
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 139 PTVLKSGYGLNGRGM-------ELSELVVFDGKLLTVDDRTGIVYI---VENNMVIPWVV 188
           P ++K+ +G  G GM       EL+EL                V +   ++    I + V
Sbjct: 40  PVIIKAAFGGGGLGMGIARNEEELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQV 99

Query: 189 LMDGNG 194
           L D +G
Sbjct: 100 LRDAHG 105


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,649,484
Number of extensions: 1595674
Number of successful extensions: 1312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1305
Number of HSP's successfully gapped: 19
Length of query: 321
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 224
Effective length of database: 6,635,264
Effective search space: 1486299136
Effective search space used: 1486299136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)