RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4616
(321 letters)
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding
protein, nucleotide-binding motif, hydrolase; HET: GP2;
1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A
2h2u_A
Length = 331
Score = 286 bits (732), Expect = 9e-96
Identities = 126/319 (39%), Positives = 165/319 (51%), Gaps = 86/319 (26%)
Query: 85 YNNTYPLTPPVQTAQGIQYRIA-----------PDNKSWLSYFKKGYLLWNPTFDQISII 133
YN+TYPL+PP +T GI+YRIA + +W SY KKGYL + + D++++
Sbjct: 17 YNDTYPLSPPQRTPAGIRYRIAVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 76
Query: 134 WDSEKPTVLKSGYGLNGRGMELSELVVFDGKLL--------------------------- 166
WD + VL+S GRGMELS+L+VF+GKL
Sbjct: 77 WD-KDHGVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEGSKAVPWVILSDGD 135
Query: 167 ------------TVDDRTGIV-------------YIVENNMVIPWVVLMDGNGQ------ 195
V D V + EN WV ++ G
Sbjct: 136 GTVEKGFKAEWLAVKDERLYVGGLGKEWTTTTGDVVNENPE---WVKVVGYKGSVDHENW 192
Query: 196 -------------SPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLS 242
P GY+IHES WS+ QRWFFLPRR+S +Y E DER N+LLS
Sbjct: 193 VSNYNALRAAAGIQPPGYLIHESACWSDTLQRWFFLPRRASQERYSEKDDERKGANLLLS 252
Query: 243 TDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITAFTLAGT 302
+F ++ V+++G V+PTHG+SSFKF+P T D++IVALKSEED GR A+YI AFTL G
Sbjct: 253 ASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKSEEDSGRVASYIMAFTLDGR 312
Query: 303 ILVPETKIADYKYEGLEFI 321
L+PETKI KYEG+EFI
Sbjct: 313 FLLPETKIGSVKYEGIEFI 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 41/140 (29%)
Query: 150 GRGMEL---SELV--VFDGKLLTVDDRTG--IVYIVENNMVIPWVVLMDGNGQSPKGYMI 202
G GM+L S+ V++ D G I+ IV NN P I
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN---------------PVNLTI 1674
Query: 203 HESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGE----- 257
H G + + S ++ + D ++ T + + N + T+ E
Sbjct: 1675 HFGGEKGKR------IRENYSAMIFETIVDGKLKTEKIFK-EINEHSTSYTFRSEKGLLS 1727
Query: 258 -------VIPTHGYSSFKFL 270
+ ++F+ L
Sbjct: 1728 ATQFTQPALTLMEKAAFEDL 1747
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.005
Identities = 20/164 (12%), Positives = 47/164 (28%), Gaps = 41/164 (25%)
Query: 33 IQVQLMSLIAFAGLFALILCVYYSHSTYNHVPAGFGPYES-NIYLKSLG---KGLMYNNT 88
+ +++ F + + +H + +H P E ++ LK L + L
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----- 318
Query: 89 YPLTPPVQTAQGIQYRIA------PDNKSWLSYFKKGYLLWNPTFDQISIIWDSEKPTVL 142
P + R++ D + +K ++ + I + +P
Sbjct: 319 -----PREVLTTNPRRLSIIAESIRDGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEY 371
Query: 143 KSGYGLNGRGMELSELVVFDGKLLTVDDRTGIVYIVENNMVIPW 186
+ + L VF +I + + W
Sbjct: 372 RKMF---------DRLSVFP------PS----AHIPTILLSLIW 396
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 30.3 bits (68), Expect = 0.82
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 22/137 (16%)
Query: 58 STYNHVPAGFGPYESNIYLKS----LGKGLMYNNTYPLTPPVQTAQ--------GIQYRI 105
++ N V A E S L L++N+ L A+ +
Sbjct: 285 ASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERKENCPACSQLPQN 344
Query: 106 APDNKSW-----LSYFKKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGR-----GMEL 155
+ S L Y L + + + + L+S + R L
Sbjct: 345 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTL 404
Query: 156 SELVVFDGKLLTVDDRT 172
EL + DG+ L V D T
Sbjct: 405 KELGLVDGQELAVADVT 421
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 27.6 bits (61), Expect = 2.7
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 199 GYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGEV 258
G++ +S + + + WF L + Y + T + V++ + V
Sbjct: 12 GWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQ 71
Query: 259 IPTHGYSSFKFLPGTKDRVIVALK--SEEDK 287
P ++ + L + +D
Sbjct: 72 PPEGRSRDGLLTVNLREGSRLHLCAETRDDA 102
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 27.5 bits (61), Expect = 2.8
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 199 GYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGEV 258
G+++ +S + + + WF L YD+ T + + V + D
Sbjct: 9 GWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQ 68
Query: 259 IPTHGYSSFKFLPGTKDRVIVALK--SEEDK 287
P +D ++L S +D
Sbjct: 69 PPDGKSKDCMLQIVCRDGKTISLCAESTDDC 99
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 27.2 bits (60), Expect = 9.0
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 113 LSYFKKGYLLWNPTFDQISIIWDSEKPTVLKSGYGLNGR-----GMELSELVVFDGKLLT 167
L Y L + + + + L+S + R L EL + DG+ L
Sbjct: 728 LDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELA 787
Query: 168 VDDRT 172
V D T
Sbjct: 788 VADVT 792
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,014,397
Number of extensions: 298219
Number of successful extensions: 526
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 13
Length of query: 321
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,077,219
Effective search space: 925528713
Effective search space used: 925528713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)