RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4616
(321 letters)
>d1s1da_ b.67.3.1 (A:) Soluble calcium-activated nucleotidase SCAN-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 288 bits (740), Expect = 1e-97
Identities = 126/319 (39%), Positives = 165/319 (51%), Gaps = 86/319 (26%)
Query: 85 YNNTYPLTPPVQTAQGIQYRIA-----------PDNKSWLSYFKKGYLLWNPTFDQISII 133
YN+TYPL+PP +T GI+YRIA + +W SY KKGYL + + D++++
Sbjct: 3 YNDTYPLSPPQRTPAGIRYRIAVIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 62
Query: 134 WDSEKPTVLKSGYGLNGRGMELSELVVFDGKLL--------------------------- 166
WD + VL+S GRGMELS+L+VF+GKL
Sbjct: 63 WDKD-HGVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVVYQIEGSKAVPWVILSDGD 121
Query: 167 ------------TVDDRTGIV-------------YIVENNMVIPWVVLMDGNGQ------ 195
V D V + EN WV ++ G
Sbjct: 122 GTVEKGFKAEWLAVKDERLYVGGLGKEWTTTTGDVVNENPE---WVKVVGYKGSVDHENW 178
Query: 196 -------------SPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLS 242
P GY+IHES WS+ QRWFFLPRR+S +Y E DER N+LLS
Sbjct: 179 VSNYNALRAAAGIQPPGYLIHESACWSDTLQRWFFLPRRASQERYSEKDDERKGANLLLS 238
Query: 243 TDSNFTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDKGRTATYITAFTLAGT 302
+F ++ V+++G V+PTHG+SSFKF+P T D++IVALKSEED GR A+YI AFTL G
Sbjct: 239 ASPDFGDIAVSHVGAVVPTHGFSSFKFIPNTDDQIIVALKSEEDSGRVASYIMAFTLDGR 298
Query: 303 ILVPETKIADYKYEGLEFI 321
L+PETKI KYEG+EFI
Sbjct: 299 FLLPETKIGSVKYEGIEFI 317
>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 29.5 bits (65), Expect = 0.17
Identities = 7/90 (7%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGE 257
+G ++ + + R F L ++ Y + + V
Sbjct: 5 QGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLR--GCVVTSVESNSN 62
Query: 258 VIPTHGYSSFKFLPGTKDRVIVALKSEEDK 287
+ + F+ + + + + +++
Sbjct: 63 GRKSEEENLFEIITADEVHYFLQAATPKER 92
>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 113
Score = 29.1 bits (64), Expect = 0.27
Identities = 9/90 (10%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGE 257
+GY++ + V++ + W L ++ + + ++ +T +
Sbjct: 8 EGYLVKKGSVFNTWKPMWVVL--LEDGIEFYKKKSDNSPKGMI-----PLKGSTLTSPCQ 60
Query: 258 VIPTHGYSSFKFLPGTKDRVIVALKSEEDK 287
+ +D A E++
Sbjct: 61 DFGKRMFVFKITTTKQQDHFFQA-AFLEER 89
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 29.3 bits (65), Expect = 0.58
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 12/118 (10%)
Query: 66 GFGPYESNIYLKSLGKGLMYNNTYPLTP-PVQTAQGIQYRIAPDNKSW-----LSYFKKG 119
+N + + G +Y T+ A + + S L Y
Sbjct: 302 SAYIPLNNYLVFNDVDG-LYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNS 360
Query: 120 YLLWNPTFDQISIIWDSEKPTVLKSGYGLNGR-----GMELSELVVFDGKLLTVDDRT 172
L + + + + L+S + R L EL + DG+ L V D T
Sbjct: 361 ASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT 418
>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 117
Score = 27.7 bits (60), Expect = 0.95
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 193 NGQSPKGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMV 252
+G+S +G + + + RWF L + +Y + + V+ +
Sbjct: 6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGT 65
Query: 253 TYIGEVIPTHGYSSFKFLPGTKDRVIVALKSEEDK 287
IG + F + A +
Sbjct: 66 PTIGAPKTVDEKAFFDVKTTRRVYNFCA-QDVPSA 99
>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 132
Score = 27.3 bits (60), Expect = 1.4
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 137 EKPTVLKSGYG-LNGRGMELSELVVFDGKLLTVDDRTGIVYI 177
K V G + G+ +L+ V +G +T+D G++Y
Sbjct: 86 GKCCVSGCGDMVIRGKSFKLNGSVFREGDYITIDGSKGLIYA 127
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 26.7 bits (58), Expect = 1.6
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGE 257
GY + + V + +R+F L ++ + ++ + L V +
Sbjct: 6 AGYCVKQGAVMKNWKRRYFQL-DENTIGYFKSELEKEPLRVIPLK------EVHKVQECK 58
Query: 258 VIPTHGYSSFKFLPGTKDRVIVALKSEEDK 287
+ + T V S E+
Sbjct: 59 QSDIMMRDNLFEIVTTSRTFYVQADSPEEM 88
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 127
Score = 26.8 bits (58), Expect = 1.9
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLST-----------DSN 246
+G+++ G + +RWF L + + ++ TD+ + L +
Sbjct: 8 EGWLLKLGGRVKTWKRRWFIL-TDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNC 66
Query: 247 FTNVMVTYIGEVIPTHGYSSFKFLPGTKDRVIV-ALKSEEDK 287
F ++ G+VI + + V + S E+K
Sbjct: 67 FELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEK 108
>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 26.9 bits (58), Expect = 1.9
Identities = 3/19 (15%), Positives = 11/19 (57%)
Query: 198 KGYMIHESGVWSEYHQRWF 216
+G+++H S + + ++
Sbjct: 4 EGWVVHYSNKDTLRKRHYW 22
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and
3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 25.9 bits (56), Expect = 3.4
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRS-------SHFKYDEVTDERMATNVLLSTDSNFTNV 250
+GY+ + G+ + RWF L R + + D + V N
Sbjct: 7 EGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNC 66
Query: 251 MVTYIGE 257
Sbjct: 67 FCLVFPF 73
>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 26.1 bits (56), Expect = 3.5
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 199 GYM-IHESGVWSEYHQRWFFL-PRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIG 256
G++ I ++ ++ +R+F L + + Y + + + V+
Sbjct: 19 GFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIAT 78
Query: 257 EVIPTHGYSSFKFLPGTKDRVIVALKSEEDK 287
F ++ + A ++D
Sbjct: 79 PKQKPKTPFCFVINALSQRYFLQA-NDQKDL 108
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 133
Score = 25.8 bits (56), Expect = 4.1
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 137 EKPTVLKSG---YGLNGRGMELSELVVFDGKLLTVDDRTGIVYIVE 179
V G + EL +G +++D TG +Y +
Sbjct: 88 GTCCVSGCGEIKINEEAKTFELGGHTFAEGDYISLDGSTGKIYKGD 133
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 26.6 bits (58), Expect = 4.4
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 205 SGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVLLSTDSNFTNVMVTYIGEVI 259
+G SE R+ +F + VTD R N T ++ + E+I
Sbjct: 276 TGERSE--------KIRTYNFPQNRVTDHR--INY---TSYRLQEILDGDLDEII 317
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase
C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 101
Score = 25.4 bits (54), Expect = 4.5
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRSSHFKYDEVTDERMATNVL 240
G + E V E++ +F L ++ + +D +
Sbjct: 4 NGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDV 46
>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 132
Score = 25.6 bits (56), Expect = 4.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 162 DGKLLTVDDRTGIVYIVE 179
G + V+ G V ++E
Sbjct: 115 TGDRVVVNADEGYVELIE 132
>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 116
Score = 25.6 bits (55), Expect = 5.2
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRSSHFKYDE 229
+GY+ + + R F L + + Y +
Sbjct: 14 QGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYD 45
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 24.9 bits (53), Expect = 7.6
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 198 KGYMIHESGVWSEYHQRWFFLPRRSSHFKYD 228
G++ + + + QR+F L + ++ D
Sbjct: 11 MGWLKKQRSIVKNWQQRYFVLRAQQLYYYKD 41
>d1ppjf_ f.27.1.1 (F:) 14 kDa protein of cytochrome bc1 complex
(Ubiquinol-cytochrome c reductase) {Cow (Bos taurus)
[TaxId: 9913]}
Length = 99
Score = 24.3 bits (53), Expect = 9.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 82 GLMYNNTYPLTPPVQTA 98
GLM ++T V+ A
Sbjct: 19 GLMRDDTIHENDDVKEA 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,229,742
Number of extensions: 57718
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 21
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)