Query psy4617
Match_columns 314
No_of_seqs 145 out of 227
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 21:27:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01115 F_actin_cap_B: F-acti 100.0 6E-109 1E-113 760.5 21.6 235 11-279 1-242 (242)
2 KOG3174|consensus 100.0 2E-106 4E-111 742.6 20.4 269 7-308 1-271 (275)
3 PF01115 F_actin_cap_B: F-acti 99.8 7.1E-21 1.5E-25 176.7 4.7 168 26-238 1-181 (242)
4 KOG3174|consensus 99.5 1.2E-14 2.5E-19 135.6 8.3 151 83-261 41-201 (275)
5 PF01267 F-actin_cap_A: F-acti 97.8 0.00021 4.5E-09 67.8 11.7 235 10-290 1-255 (271)
6 KOG0836|consensus 95.1 1.6 3.4E-05 42.6 16.2 244 5-290 2-262 (282)
7 PF08727 P3A: Poliovirus 3A pr 26.5 10 0.00023 29.2 -1.7 25 38-62 16-40 (57)
8 KOG3261|consensus 22.3 92 0.002 29.1 3.2 28 186-214 73-100 (202)
9 PF14842 FliG_N: FliG N-termin 20.6 98 0.0021 25.4 2.8 26 13-38 21-46 (108)
10 PF14483 Cut8_M: Cut8 dimerisa 19.3 1.4E+02 0.0031 20.9 3.0 32 17-48 5-36 (38)
No 1
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=100.00 E-value=6.2e-109 Score=760.55 Aligned_cols=235 Identities=77% Similarity=1.219 Sum_probs=210.0
Q ss_pred hHHHHHHHHhcCCchhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcCCCCC
Q psy4617 11 QMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLE 90 (314)
Q Consensus 11 ~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~ydppl~ 90 (314)
|+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+|||||||||||||||||||+|+||++
T Consensus 1 k~d~aLdLlRRlpP~~ie~nl~~l~~L~Pdl~edLLssVD~PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~~~ 80 (242)
T PF01115_consen 1 KLDAALDLLRRLPPKKIEKNLSNLIDLVPDLTEDLLSSVDQPLKVARDKETGKDYLLCDYNRDGDSYRSPWSNKYYPPLE 80 (242)
T ss_dssp HHHHHHHHHTTS-GGGHHHHHHHHHHHSGGGHHHHHHHS----EEEEETTTTEEEEESGGGEETTEEE-TTT--EES--S
T ss_pred ChhHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEchhhCCeeEeecccCCcccccCCCCcccCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----CCCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecCC
Q psy4617 91 -----DGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDH 165 (314)
Q Consensus 91 -----~~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~ 165 (314)
+++.||++||+||+.||++||+||++|| +||+||||+||+++
T Consensus 81 ~~~~~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYy---------------------------------eGGvSSVYlWd~d~ 127 (242)
T PF01115_consen 81 GDDLEDGPVPSERLRKLEIEANEAFDIYRDLYY---------------------------------EGGVSSVYLWDLDD 127 (242)
T ss_dssp -----S-----HHHHHHHHHHHHHHHHHHHHHH---------------------------------SSSEEEEEEEEETT
T ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHHHHHh---------------------------------CCCeeEEEEEecCC
Confidence 9999999999999999999999999999 78899999999988
Q ss_pred --ceEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCceeeEeeeeeeEeeeeccccC
Q psy4617 166 --GFAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVS 243 (314)
Q Consensus 166 --gFa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g~~~LsGslTrq~E~~~~~~ 243 (314)
||||||||||++++++...|+|||||||||++++++ ++||||||||||+|+++.++.|.|+|||+||||+|++++++
T Consensus 128 ~~gFag~vLiKK~~~~~~~~~g~WDSIHV~Ev~~~~~~-~a~YklTSTV~L~l~~~~~~~g~~~LsGsltrq~e~~~~~~ 206 (242)
T PF01115_consen 128 DDGFAGVVLIKKEGDPSNEISGSWDSIHVFEVTESSSG-TAHYKLTSTVMLSLKTNDDASGSFNLSGSLTRQTEKDLPVS 206 (242)
T ss_dssp --EEEEEEEEEEEE-TGCCEEEEEEEEEEEEEEEETTS-EEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEEEEE-S
T ss_pred CcceeEEEEEEecCCCCCCccceEeeeEEEEEEecCCC-eEEEEEEEEEEEEEecCCCCCceEeecceeehhhccccccC
Confidence 899999999997776778999999999999998644 89999999999999999889999999999999999999999
Q ss_pred CCchhhHhhhhHHHHHHHHHHhhhhhhhccchhHHH
Q psy4617 244 DTSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIV 279 (314)
Q Consensus 244 ~~~~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv 279 (314)
+..+||+|||+|||+||++|||+||+|||+||||||
T Consensus 207 ~~~~Hi~NiG~lIEdmE~~mR~~L~~VYf~KtkdIv 242 (242)
T PF01115_consen 207 DSSSHIANIGRLIEDMENKMRNLLQEVYFGKTKDIV 242 (242)
T ss_dssp SSS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 999999999999999999999999999999999997
No 2
>KOG3174|consensus
Probab=100.00 E-value=1.8e-106 Score=742.63 Aligned_cols=269 Identities=72% Similarity=1.166 Sum_probs=260.4
Q ss_pred cccchHHHHHHHHhcCCchhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcC
Q psy4617 7 YTELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYD 86 (314)
Q Consensus 7 m~~~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~yd 86 (314)
|+++|+||||||||||||++||+||++||+|+|+|||||||||||||||++|+++||+||+||||||||||||||||+|+
T Consensus 1 MsdqQlD~ALDLmRrLpPqqieKnL~nLIdL~P~L~edLLsSVdqplKia~dke~g~~yllcDynrdgDsyRsPwsnsy~ 80 (275)
T KOG3174|consen 1 MSDQQLDCALDLMRRLPPQQIEKNLSNLIDLAPHLCEDLLSSVDQPLKIARDKESGKQYLLCDYNRDGDSYRSPWSNSYD 80 (275)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHHhchHHHHHHHhhcccceeehhhhhcCCeeeeeecCCCcccccCCCCcccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecCCc
Q psy4617 87 PPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHG 166 (314)
Q Consensus 87 ppl~~~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~g 166 (314)
|||+++++|++.||+||+.+|.+|++||++|| |||+||||+||+++|
T Consensus 81 pPledg~~Psd~lrklei~aN~af~~yrdly~---------------------------------egGvssVylwdld~~ 127 (275)
T KOG3174|consen 81 PPLEDGVYPSDRLRKLEIEANLAFRSYRDLYY---------------------------------EGGVSSVYLWDLDFG 127 (275)
T ss_pred CccccCCCcHHHHHHHHHHHHHHHHHHhHHhe---------------------------------ecCcceEEEEeccCC
Confidence 99999999999999999999999999999999 788888999999765
Q ss_pred -eEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCc-eeeEeeeeeeEeeeeccccCC
Q psy4617 167 -FAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIAS-GKMNLGGSLTRQIEMDAQVSD 244 (314)
Q Consensus 167 -Fa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~-g~~~LsGslTrq~E~~~~~~~ 244 (314)
||||+||||+.++.+...|||||||||||+++.+++++|||||||+|||+++++.++ |.|+|+|+||||+|++.++++
T Consensus 128 gfag~vlikK~~~~~~~~~g~wdsIhvie~~~~~~~~s~~y~lTSTi~l~l~~~K~~s~~~mnl~g~Ltrq~e~d~~v~~ 207 (275)
T KOG3174|consen 128 GFAGVVLIKKAGDGHKNIVGCWDSIHVIEVTEETSLRSAHYKLTSTIMLWLSTTKNESLGAMNLGGSLTRQTEKDVAVDD 207 (275)
T ss_pred CcccceEEeeccCCCCCcccceeeeEEEEEecccccceeEEEeeeEEEEEecCCCccchhhhhhhhHhhhhhhccccccc
Confidence 999999999999988889999999999999988889999999999999999888765 999999999999999999999
Q ss_pred CchhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccccCCcccHHHHHHHHHHHHHHHHHHh
Q psy4617 245 TSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQQALKQDLAAALQKR 308 (314)
Q Consensus 245 ~~~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lRs~~~~~~~~~~~~~~~el~~~l~~~ 308 (314)
...||+|+|+|||+||++||++|++|||||||+|++.+|+++.++....+.+++.|++++|+.+
T Consensus 208 ~~tHian~gklve~~et~mr~~l~~iYfgkTkdi~~~~Rs~~~~a~~~~~~~~~~~~~~~l~~~ 271 (275)
T KOG3174|consen 208 SRTHIANQGKLVEDMETKMRNLLNEIYFGKTKDISNQLRSPQALADAESQDNAERELHNGLETS 271 (275)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHhhccchhhhhcccchhhHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999875
No 3
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=99.82 E-value=7.1e-21 Score=176.68 Aligned_cols=168 Identities=23% Similarity=0.268 Sum_probs=115.5
Q ss_pred hHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcCCCCCCCCCChhHHHHHHHH
Q psy4617 26 QIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEID 105 (314)
Q Consensus 26 ~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~ydppl~~~~~ps~~lr~Le~d 105 (314)
+++..|+-+=.|.|.-++.=|+.+=+ -+|+-..+-| ..+|+||+...++..++.||+||
T Consensus 1 k~d~aLdLlRRlpP~~ie~nl~~l~~-----L~Pdl~edLL----------------ssVD~PLkv~~d~~~~k~yL~Cd 59 (242)
T PF01115_consen 1 KLDAALDLLRRLPPKKIEKNLSNLID-----LVPDLTEDLL----------------SSVDQPLKVARDKETGKDYLLCD 59 (242)
T ss_dssp HHHHHHHHHTTS-GGGHHHHHHHHHH-----HSGGGHHHHH----------------HHS----EEEEETTTTEEEEESG
T ss_pred ChhHHHHHHhhCChHHHHHHHHHHHH-----HHHHHHHHHH----------------HhCCCcceEEEchhhCCeeEeec
Confidence 35566777777778877776665421 1222222333 67999999999999999999999
Q ss_pred HhhhhhhhhccccCCCCCCcccccCC-----C--------chhhhhhhhhHHHhhhhhccCCccceeeeecCCceEEEEE
Q psy4617 106 ANHAFDQYREMYFEGGVSSVYLWDLD-----H--------GFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVIL 172 (314)
Q Consensus 106 ~N~~~DsYR~~Yy~Ggvss~yl~dl~-----~--------g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~gFa~v~L 172 (314)
|||++||||||| |++|.+.++ + +++|+.||++||+||+ +|+ +||.+||||
T Consensus 60 YNRDgDSYRSPw-----SNkY~P~~~~~~~~dg~~PS~~LR~LEi~aN~~Fd~Yr~---------lYy---eGGvSSVYl 122 (242)
T PF01115_consen 60 YNRDGDSYRSPW-----SNKYYPPLEGDDLEDGPVPSERLRKLEIEANEAFDIYRD---------LYY---EGGVSSVYL 122 (242)
T ss_dssp GGEETTEEE-TT-----T--EES--S-----S-----HHHHHHHHHHHHHHHHHHH---------HHH---SSSEEEEEE
T ss_pred ccCCcccccCCC-----CcccCCCccccccCCCCCChHHHHHHHHHHHHHHHHHHH---------HHh---CCCeeEEEE
Confidence 999999999996 455555555 3 3499999999999999 998 999999999
Q ss_pred EEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCceeeEeeeeeeEeeee
Q psy4617 173 IKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEM 238 (314)
Q Consensus 173 ~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g~~~LsGslTrq~E~ 238 (314)
|+.++++ +|+|||+.=|. .. ++......+.|+..++++....+.-...|..++.=+++.
T Consensus 123 Wd~d~~~--gFag~vLiKK~---~~--~~~~~~g~WDSIHV~Ev~~~~~~~a~YklTSTV~L~l~~ 181 (242)
T PF01115_consen 123 WDLDDDD--GFAGVVLIKKE---GD--PSNEISGSWDSIHVFEVTESSSGTAHYKLTSTVMLSLKT 181 (242)
T ss_dssp EEETT----EEEEEEEEEEE---E---TGCCEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE
T ss_pred EecCCCc--ceeEEEEEEec---CC--CCCCccceEeeeEEEEEEecCCCeEEEEEEEEEEEEEec
Confidence 9998652 49999998886 11 134589999999999998665433344444444444444
No 4
>KOG3174|consensus
Probab=99.55 E-value=1.2e-14 Score=135.59 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=107.9
Q ss_pred CCcCCCCCCCCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCc--------hhhhhhhhhHHHhhhhhccCC
Q psy4617 83 NVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHG--------FAEIDANHAFDQYREMYFEGG 154 (314)
Q Consensus 83 n~ydppl~~~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g--------~lEv~aN~~fd~yr~~~~egg 154 (314)
..++|||+...+-..+..+|.|||||++|+||+|| |+.|++.+.+| ++|+.||.+|++||+
T Consensus 41 sSVdqplKia~dke~g~~yllcDynrdgDsyRsPw-----snsy~pPledg~~Psd~lrklei~aN~af~~yrd------ 109 (275)
T KOG3174|consen 41 SSVDQPLKIARDKESGKQYLLCDYNRDGDSYRSPW-----SNSYDPPLEDGVYPSDRLRKLEIEANLAFRSYRD------ 109 (275)
T ss_pred hhcccceeehhhhhcCCeeeeeecCCCcccccCCC-----CcccCCccccCCCcHHHHHHHHHHHHHHHHHHhH------
Confidence 57999999998888899999999999999999996 44555554443 599999999999998
Q ss_pred ccceeeeecCCceEEEEEEEecCCCCCCCcceeeeeEEEEEeecCC-CcceeEEEeeEEEEEEeecCC-CceeeEeeeee
Q psy4617 155 VSSVYLWDLDHGFAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPT-GRNAHYKLTSTVMLWLQTNKI-ASGKMNLGGSL 232 (314)
Q Consensus 155 ~sSvY~wd~~~gFa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~-~~~~~YklTSTv~L~l~~~~~-~~g~~~LsGsl 232 (314)
.|+ ++|.++||||+++.+| |+|. |.+....+ .++..=.+.|...+.++.... .+-...|+-++
T Consensus 110 ---ly~---egGvssVylwdld~~g---fag~------vlikK~~~~~~~~~g~wdsIhvie~~~~~~~~s~~y~lTSTi 174 (275)
T KOG3174|consen 110 ---LYY---EGGVSSVYLWDLDFGG---FAGV------VLIKKAGDGHKNIVGCWDSIHVIEVTEETSLRSAHYKLTSTI 174 (275)
T ss_pred ---Hhe---ecCcceEEEEeccCCC---cccc------eEEeeccCCCCCcccceeeeEEEEEecccccceeEEEeeeEE
Confidence 998 9999999999998665 6764 44432211 112233477888888765532 24566777777
Q ss_pred eEeeeeccccCCCchhhHhhhhHHHHHHH
Q psy4617 233 TRQIEMDAQVSDTSPHIANIGRMVEEMEN 261 (314)
Q Consensus 233 Trq~E~~~~~~~~~~Hi~NiG~lIE~~E~ 261 (314)
+=++..+.. ....|+.--|.|...+|+
T Consensus 175 ~l~l~~~K~--~s~~~mnl~g~Ltrq~e~ 201 (275)
T KOG3174|consen 175 MLWLSTTKN--ESLGAMNLGGSLTRQTEK 201 (275)
T ss_pred EEEecCCCc--cchhhhhhhhHhhhhhhc
Confidence 777655432 223565555666655543
No 5
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....
Probab=97.83 E-value=0.00021 Score=67.80 Aligned_cols=235 Identities=20% Similarity=0.327 Sum_probs=136.4
Q ss_pred chHHHHHHHHhcCCchhHHHHHHhHhhcCcc--hhHH-hhh-----ccCccceeeeccccCcceeecccCCC-CCCCCCC
Q psy4617 10 LQMDCALDLMRRLPPQQIEKNLSDLIDLVPG--LCED-LLS-----SVDQPLKIARDKEMGKDYLLCDYNRD-GDSYRSP 80 (314)
Q Consensus 10 ~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~--l~ed-LLs-----sVD~PLki~~d~~~~k~yL~CdyNRD-gDSYRSP 80 (314)
++.+.+-+++..=||-++.+-+++|..|.++ +..+ +.. .++|-..|.-+ .....+|.|.||+. ++.|==|
T Consensus 1 ek~~ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~-~~~~~viis~~n~~~~~ry~Dp 79 (271)
T PF01267_consen 1 EKVEIISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLP-GSDHKVIISKYNKLGGNRYFDP 79 (271)
T ss_dssp HHHHHHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--T-TSSS-EEE-GGGBESTTEEEET
T ss_pred CHHHHHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeC-CCCcceEEecccccCCCeEEEe
Confidence 3567788999999999999999999999988 2222 222 24555555543 34688999999999 5555333
Q ss_pred CCCCcCC--CCC-------CCCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhhhhHHHhhhhhc
Q psy4617 81 WSNVYDP--PLE-------DGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYF 151 (314)
Q Consensus 81 wSn~ydp--pl~-------~~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~ 151 (314)
=+++-+- .+. +...+...++.+--... .++..|.+-.|
T Consensus 80 ~~~~~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~---------------------------------~~l~~Yv~~hy 126 (271)
T PF01267_consen 80 RSKKSFSVDHLKQKASDVEPYEPPDEELESYRDALD---------------------------------KALEKYVKEHY 126 (271)
T ss_dssp TTTEEEEEETTTTEEEEEEE-----TSSHHHHHHHH---------------------------------HHHHHHHHHHS
T ss_pred ccCcEEEEeeeccEEccCccccccccchHHHHHHHH---------------------------------HHHHHHHHHhc
Confidence 3332211 010 01111122222222223 44455555555
Q ss_pred cCCccceeeeecCCc--eEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCceeeEee
Q psy4617 152 EGGVSSVYLWDLDHG--FAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLG 229 (314)
Q Consensus 152 egg~sSvY~wd~~~g--Fa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g~~~Ls 229 (314)
..|..+||.-+.++. +.-|+.=.+- .+.+--.|.|-|.=+|.+.+ + . .|+.+|-+.+--=.+ |.+.|.
T Consensus 127 ~~g~~~V~~~~~~~~~~l~i~I~~~k~-n~~NfwnG~WrS~w~~~~~~---~--~--~l~G~I~V~vHYyEd--GNVqL~ 196 (271)
T PF01267_consen 127 PSGACGVYPKSEEDKETLVICIVAHKY-NPKNFWNGRWRSEWTVDFSS---S--G--TLSGKIKVQVHYYED--GNVQLN 196 (271)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEEEEEE-EGGGTEEEEEEEEEEEEEET---T--E--EEEEEEEEEEEE-TT--EEEEEE
T ss_pred cCceeEEEeccCCCccEEEEEEEeccc-ccccccCceeeEEEEEecCC---C--c--eEEEEEEeeEEEEee--cEEEEE
Confidence 566777776544443 4444333332 22222489999999998832 1 1 788888877643333 666655
Q ss_pred eeeeEeeeeccccCCCchhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccccCCcccH
Q psy4617 230 GSLTRQIEMDAQVSDTSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSV 290 (314)
Q Consensus 230 GslTrq~E~~~~~~~~~~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lRs~~~~~~ 290 (314)
.+ +..+.+..+.+......+|=+.|++.|+++-..|++-|-.=...-+..||..-|+..
T Consensus 197 ~~--k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~e~~~~ls~~tFK~LRR~LPVTR 255 (271)
T PF01267_consen 197 SS--KEVSETVSVSNDEQFASDIVKAIKEAENKYQTSLNESYNNLSEKTFKALRRQLPVTR 255 (271)
T ss_dssp EE--EEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHS-SS-TTT
T ss_pred Ec--cccceeeccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhCCCCC
Confidence 44 344444444444567788999999999999999999987776677799998776654
No 6
>KOG0836|consensus
Probab=95.09 E-value=1.6 Score=42.58 Aligned_cols=244 Identities=20% Similarity=0.243 Sum_probs=130.9
Q ss_pred cccc-cchHHHHHHHHhcCCchhHHHHHHhHhhcCcchh---HHh-----hhccCccceeeeccccCcceeecccCCCCC
Q psy4617 5 INYT-ELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLC---EDL-----LSSVDQPLKIARDKEMGKDYLLCDYNRDGD 75 (314)
Q Consensus 5 ~~m~-~~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~l~---edL-----LssVD~PLki~~d~~~~k~yL~CdyNRDgD 75 (314)
+.|| +++...|-++++.=||-.+-.-.++|+.|.-+=. +-. .=.+|+-..|.-+. ...+=|...||+-|+
T Consensus 2 ~~lS~~~k~rii~kfi~~APPGEfneVf~Dlr~ll~~d~l~~e~~~~A~~qYn~~~~vpv~i~g-~~~~viIS~~n~lg~ 80 (282)
T KOG0836|consen 2 SELSDAEKVRIISKFILHAPPGEFNEVFNDLRLLLSNDELLKEAAHEAFAQYNVDQMVPVEIDG-GANQVIISEYNDLGN 80 (282)
T ss_pred CcccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhcchhHHHHHHHHHHHHhchhcceeEecCC-CCCceEEecccccCc
Confidence 4677 4578889999999999999999999998874311 111 11355543333332 125789999999996
Q ss_pred CCCCCCCCCcCCCCCCCCCChhHHHHHHHHHhhhhhhhhc-cccCCCCCCcccccCCCchhhhhhhhhHHHhhhhhccCC
Q psy4617 76 SYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYRE-MYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGG 154 (314)
Q Consensus 76 SYRSPwSn~ydppl~~~~~ps~~lr~Le~d~N~~~DsYR~-~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg 154 (314)
++|+-|...-.+--++||.-+.|.-......-. -+ ....+-..-..|..-+|.||
T Consensus 81 -------~rf~Dp~~k~sFk~dhl~kea~d~qp~~~~~~~~E~-----------------~r~~l~~~l~~y~~~hy~~~ 136 (282)
T KOG0836|consen 81 -------NRFLDPVNKKSFKYDHLRKEAEDVQPYEAEINIIEI-----------------WRYALDAQLKKYVSDHYPKG 136 (282)
T ss_pred -------ceecchhhceeeeHHHHHHHhccCCCcchhhhhhHH-----------------HHHHHHHHHHHHHHhccCCC
Confidence 344444333333334444433332111111000 00 01111122233333334444
Q ss_pred ccceeeeecCCc-eEEEEEEEe-cCCCCCCCcceeeeeEEEEEee-cC-CCc---ceeEEEeeEEEEEEeecCCCceeeE
Q psy4617 155 VSSVYLWDLDHG-FAGVILIKK-AGDGSRKIQGCWDSIHVVEVQE-KP-TGR---NAHYKLTSTVMLWLQTNKIASGKMN 227 (314)
Q Consensus 155 ~sSvY~wd~~~g-Fa~v~L~kk-~~~~~~~~~G~wdSIHV~Ev~~-~~-~~~---~~~YklTSTv~L~l~~~~~~~g~~~ 227 (314)
++.+ +.-.++. +.-++.+.- .=.+.+--.|.|-|+-.|.|++ .. +|+ ++||-=..-|-|. ..++-..++.
T Consensus 137 ~t~~-vkk~dg~~~~l~icIesh~y~pkNfwNG~WRS~w~~~v~~~~~l~G~i~vqvHYyEdGNV~l~--s~Kd~qds~~ 213 (282)
T KOG0836|consen 137 VTFV-VKKSDGEQETLTICIESHQYQPKNFWNGRWRSEWNYDVQPTTELKGRIKVQVHYYEDGNVQLV--SSKDIQDSLT 213 (282)
T ss_pred ceEE-EeccCCcceEEEEEEeecccCcccccCCceeeeeeeccCchheeeeEEEEEEEEEecCcEEEE--ecCcchhhhe
Confidence 4443 3333321 222222221 1123233479999999999987 11 122 2666655544443 2222111222
Q ss_pred eeeeeeEeeeeccccCCCchhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccccCCcccH
Q psy4617 228 LGGSLTRQIEMDAQVSDTSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSV 290 (314)
Q Consensus 228 LsGslTrq~E~~~~~~~~~~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lRs~~~~~~ 290 (314)
+ +.+ ..-..-+-++||+.|+...+.|++-|+.=.-.-+..||..-++.-
T Consensus 214 v------sn~--------~q~a~e~~~iI~~~Eneyq~ai~e~yq~lsD~tFKaLRRqLPVTR 262 (282)
T KOG0836|consen 214 V------SNE--------VQTAKEFIKIIEEAENEYQAAISENYQTLSDTTFKALRRQLPVTR 262 (282)
T ss_pred e------ech--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHhhCCcee
Confidence 2 222 123344667899999999999999999877767788887655543
No 7
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=26.49 E-value=10 Score=29.16 Aligned_cols=25 Identities=40% Similarity=0.414 Sum_probs=18.9
Q ss_pred CcchhHHhhhccCccceeeeccccC
Q psy4617 38 VPGLCEDLLSSVDQPLKIARDKEMG 62 (314)
Q Consensus 38 ~p~l~edLLssVD~PLki~~d~~~~ 62 (314)
.|.-..|||+|||.|=-+.+|.+.|
T Consensus 16 ~P~~I~DLL~SV~~~eV~~YC~~~G 40 (57)
T PF08727_consen 16 PPPAIADLLRSVDSPEVREYCEEQG 40 (57)
T ss_dssp SS-TTHHHHHHH--HHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHCC
Confidence 4888899999999999888888765
No 8
>KOG3261|consensus
Probab=22.27 E-value=92 Score=29.12 Aligned_cols=28 Identities=39% Similarity=0.612 Sum_probs=22.2
Q ss_pred eeeeeEEEEEeecCCCcceeEEEeeEEEE
Q psy4617 186 CWDSIHVVEVQEKPTGRNAHYKLTSTVML 214 (314)
Q Consensus 186 ~wdSIHV~Ev~~~~~~~~~~YklTSTv~L 214 (314)
.|| -|||-|+.++.+....|-|.||.-+
T Consensus 73 lWD-YHVi~v~~~s~~~~~vyDLDstLpf 100 (202)
T KOG3261|consen 73 LWD-YHVICVQRKSDSEPLVYDLDSTLPF 100 (202)
T ss_pred EEE-EEEEEEEEccCCCceEEecccCCcC
Confidence 466 5999988776666799999999755
No 9
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=20.64 E-value=98 Score=25.40 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCchhHHHHHHhHhhcC
Q psy4617 13 DCALDLMRRLPPQQIEKNLSDLIDLV 38 (314)
Q Consensus 13 d~aLdLlRRLpP~~ie~nl~~l~~L~ 38 (314)
+.|-.+|++|+|+.|++--..+..|-
T Consensus 21 e~Aa~vlk~l~~~ei~~i~~~ma~l~ 46 (108)
T PF14842_consen 21 EAAAEVLKHLDEEEIERISREMAKLG 46 (108)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHT--
T ss_pred HHHHHHHccCCHHHHHHHHHHHHccC
Confidence 77889999999999988777776663
No 10
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=19.31 E-value=1.4e+02 Score=20.87 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=27.2
Q ss_pred HHHhcCCchhHHHHHHhHhhcCcchhHHhhhc
Q psy4617 17 DLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSS 48 (314)
Q Consensus 17 dLlRRLpP~~ie~nl~~l~~L~p~l~edLLss 48 (314)
.|+.-|+.++...-|.++|+--|++++++.+.
T Consensus 5 RlLE~Ld~~qL~~lL~~l~~~HPei~~~i~~~ 36 (38)
T PF14483_consen 5 RLLETLDKDQLQSLLQSLCERHPEIQQEIRSI 36 (38)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHSTHHHHHHHTT
T ss_pred HHHHHcCHHHHHHHHHHHHHhChhHHHHHHhh
Confidence 47788999999999999999999999988653
Done!