Query psy4617
Match_columns 314
No_of_seqs 145 out of 227
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:27:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk4_B F-actin-capping protein 100.0 2E-120 8E-125 846.5 23.9 272 7-311 1-272 (277)
2 4akr_B F-actin-capping protein 100.0 3E-118 9E-123 836.4 23.7 270 5-309 17-290 (290)
3 3aa0_B F-actin-capping protein 100.0 1E-113 5E-118 790.2 24.3 244 7-283 1-244 (244)
4 3aa0_A F-actin-capping protein 100.0 7.2E-51 2.5E-55 379.9 14.6 239 7-292 8-268 (286)
5 3lk4_B F-actin-capping protein 99.8 5.4E-21 1.8E-25 178.8 4.3 166 25-237 4-178 (277)
6 3aa0_B F-actin-capping protein 99.8 9.6E-21 3.3E-25 174.6 5.2 167 24-237 3-178 (244)
7 4akr_B F-actin-capping protein 99.8 7.4E-21 2.5E-25 178.7 4.1 169 24-236 21-197 (290)
8 4akr_A F-actin-capping protein 98.4 6.3E-06 2.1E-10 77.3 14.9 231 7-290 4-262 (281)
9 3aa0_A F-actin-capping protein 97.8 1.2E-05 4.2E-10 75.1 3.5 116 88-237 64-197 (286)
10 2l08_A Regulator of nonsense t 33.3 7 0.00024 31.4 -0.6 19 18-36 13-31 (97)
11 2hiq_A Hypothetical protein YD 24.9 68 0.0023 26.5 3.9 55 140-197 31-97 (113)
12 1wgl_A TOLL-interacting protei 22.2 26 0.00087 25.5 0.7 28 22-49 4-31 (59)
13 1uw4_A UPF3X; nonsense mediate 21.5 20 0.00069 28.1 0.1 19 18-36 5-23 (91)
No 1
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=100.00 E-value=2.3e-120 Score=846.52 Aligned_cols=272 Identities=80% Similarity=1.289 Sum_probs=233.4
Q ss_pred cccchHHHHHHHHhcCCchhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcC
Q psy4617 7 YTELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYD 86 (314)
Q Consensus 7 m~~~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~yd 86 (314)
|+++++||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+|||||||||||||||||||+|+
T Consensus 1 Ms~~~~daaLdLlRRLpP~~ie~nl~~l~~L~P~L~edLLssVDqPLki~~d~~~~k~yL~CDYNRDgDSYRSPwSNkY~ 80 (277)
T 3lk4_B 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYD 80 (277)
T ss_dssp --CCHHHHHHHHHTTSCGGGHHHHHHHHHHHCGGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEE
T ss_pred CchhHHHHHHHHHhhCCHHHHHHHHHHHHhhChHhHHHHHHhCCcCceEeEccccCCeeEeecccCCCccccCCCcCCcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecCCc
Q psy4617 87 PPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHG 166 (314)
Q Consensus 87 ppl~~~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~g 166 (314)
||++++++||++||+||+.||++||+||++|| |||+||||+||+++|
T Consensus 81 Ppl~dg~~PS~~LRkLEi~aN~aFd~Yr~lYY---------------------------------eGGvSSVYlWdld~g 127 (277)
T 3lk4_B 81 PPLEDGAMPSARLRKLEVEANNAFDQYRDLYF---------------------------------EGGVSSVYLWDLDHG 127 (277)
T ss_dssp SCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHH---------------------------------SSSEEEEEEEEETTE
T ss_pred CCCcCCCCCcHHHHHHHHHHHHHHHHHHHHHh---------------------------------CCCeeEEEEEecCCC
Confidence 99999999999999999999999999999999 899999999999999
Q ss_pred eEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCceeeEeeeeeeEeeeeccccCCCc
Q psy4617 167 FAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVSDTS 246 (314)
Q Consensus 167 Fa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g~~~LsGslTrq~E~~~~~~~~~ 246 (314)
|||||||||+.+++++..|+|||||||||+++++|+++||||||||||+|++++++.|.|+|||+||||+|+++++++..
T Consensus 128 FagvvLiKK~~~~~~~~~G~WDSIHV~Ev~~~~~~~~~~YklTSTVmL~l~~~~~~~g~~~LsGsltRq~e~~~~v~~~~ 207 (277)
T 3lk4_B 128 FAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSS 207 (277)
T ss_dssp EEEEEEEEEECCCGGGEEEEEEEEEEEEEEC----CEEEEEEEEEEEEEEEECCSSSSEEEEEEEEEEEEEEEEECSSSS
T ss_pred eEEEEEEEecCCCccccccceeeeEEEEEeeccCCceeEEEEeEEEEEEEEcCCCCcceEeeceeeeeeccccccCCCCc
Confidence 99999999998887778999999999999987668889999999999999999888999999999999999999999999
Q ss_pred hhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccccCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy4617 247 PHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQQALKQDLAAALQKRNAK 311 (314)
Q Consensus 247 ~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lRs~~~~~~~~~~~~~~~el~~~l~~~~~~ 311 (314)
+||+|||+|||+||++|||+|++||||||||||++|||+.++++.++++++|+||+++|++++.+
T Consensus 208 ~Hi~NiG~mVEdmE~~mRn~L~~VYFgKtkdIv~~lRs~~~~~~~~~~~~~~~el~~~l~~~~~~ 272 (277)
T 3lk4_B 208 PHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSIDAIPDNQKYKQLQRELSQVLTQRQIY 272 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTC----------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhHhc
Confidence 99999999999999999999999999999999999999999999999999999999999998764
No 2
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=100.00 E-value=2.7e-118 Score=836.36 Aligned_cols=270 Identities=57% Similarity=0.932 Sum_probs=238.0
Q ss_pred cccccchHHHHHHHHhcCCchhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCC
Q psy4617 5 INYTELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNV 84 (314)
Q Consensus 5 ~~m~~~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~ 84 (314)
..|+++|+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+|||||||||||||||||||+
T Consensus 17 ~~~~~~~~daaLdLlRRLpP~~ie~nL~~Li~L~Pdl~edLLssVDqPLki~~d~~~~k~yL~CDYNRDGDSYRSPwSNk 96 (290)
T 4akr_B 17 VQGTEKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADSYRSPWSNK 96 (290)
T ss_dssp ---CHHHHHHHHHHHHHSCGGGHHHHHHHHHHHCGGGHHHHHHHCCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCC
T ss_pred eecchhHHHHHHHHHhhCCHHHHHHHHHHHHhhChHhHHHHHHhCCCcceEeEccccCCeEEeecccCCCccccCCCCCC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecC
Q psy4617 85 YDPPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLD 164 (314)
Q Consensus 85 ydppl~~~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~ 164 (314)
|+||++++++||+.||+||+.||++||+||++|| |||+||||+||++
T Consensus 97 Y~Ppl~dg~~PS~~LRkLEi~aN~aFd~Yr~lYY---------------------------------eGGvSSVYlWdld 143 (290)
T 4akr_B 97 YDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYF---------------------------------EGGVSSVYCWDLD 143 (290)
T ss_dssp EESCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHH---------------------------------SSSEEEEEEEEET
T ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHh---------------------------------cCCeeEEEEEecC
Confidence 9999999999999999999999999999999999 8899999999999
Q ss_pred CceEEEEEEEecCCCCC---CCcceeeeeEEEEEeecCCCcc-eeEEEeeEEEEEEeecCCCceeeEeeeeeeEeeeecc
Q psy4617 165 HGFAGVILIKKAGDGSR---KIQGCWDSIHVVEVQEKPTGRN-AHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDA 240 (314)
Q Consensus 165 ~gFa~v~L~kk~~~~~~---~~~G~wdSIHV~Ev~~~~~~~~-~~YklTSTv~L~l~~~~~~~g~~~LsGslTrq~E~~~ 240 (314)
+||||||||||..++++ ...|+|||||||||+++ +++ +||||||||||+|++++++.|.|+||||||||+|+++
T Consensus 144 ~gFagvvLiKK~~~~~~~g~~~~G~WDSIHV~Ev~~~--~~~~a~YklTSTVmL~L~t~~~~~g~~~LsGslTRq~e~~~ 221 (290)
T 4akr_B 144 DNFAAVVLMKKTQDQSKKGQPMRGTWDSIHVVEVKLG--KKDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEY 221 (290)
T ss_dssp TEEEEEEEEEEEEC------CEEEEEEEEEEEEEEEE--TTTEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEE
T ss_pred CCceEEEEEEeccCccccccCCCCceeeeEEEEEeec--CCCceEEEEeEEEEEEEecCCCCCceEeeeeeeeeeccccc
Confidence 99999999999977765 57999999999999987 455 9999999999999998888999999999999999999
Q ss_pred ccCCCchhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccccCCcccHHHHHHHHHHHHHHHHHHhh
Q psy4617 241 QVSDTSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQQALKQDLAAALQKRN 309 (314)
Q Consensus 241 ~~~~~~~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lRs~~~~~~~~~~~~~~~el~~~l~~~~ 309 (314)
++++..+||+|||+|||+||++|||+|++||||||||||++|||+.++++.++++++|+||+++|++++
T Consensus 222 ~v~d~~~HI~NiG~mVEdmE~kmRn~L~eVYFgKtkdIv~~lRs~~~~~~~~~~~~~~~el~~~l~~~~ 290 (290)
T 4akr_B 222 TFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEVVNTLRNATGNSELEKRKNLSNQIGSAIGNRG 290 (290)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCCC--------------------
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 3
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=100.00 E-value=1.4e-113 Score=790.17 Aligned_cols=244 Identities=87% Similarity=1.394 Sum_probs=237.2
Q ss_pred cccchHHHHHHHHhcCCchhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcC
Q psy4617 7 YTELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYD 86 (314)
Q Consensus 7 m~~~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~yd 86 (314)
|+++|+||||||||||||++||+||++||+|+|+||+||||+|||||||++|+++||+||+||||||||||||||||+|+
T Consensus 1 m~~~~~d~aLdL~RRLpP~~ie~nl~~l~~L~Pdl~edLLssVDqPLki~~d~~~~k~yL~CdYNRDgDSYRSPwSN~Y~ 80 (244)
T 3aa0_B 1 MSDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYD 80 (244)
T ss_dssp -CHHHHHHHHHHHTTSCGGGHHHHHHHHHHHCGGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEE
T ss_pred CCchHHHHHHHHHhcCCHHHHHHHHHHHHHhChHHHHHHHhccCCcceEeeccccCCeeeeecccCCCccccCCCCCCcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecCCc
Q psy4617 87 PPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHG 166 (314)
Q Consensus 87 ppl~~~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~g 166 (314)
||++++++||++||+||++||++||+||++|| |||+||||+||+++|
T Consensus 81 P~~~dg~~PS~~LR~LEi~aN~~Fd~Yr~lYy---------------------------------eGGvSSVYlWdld~g 127 (244)
T 3aa0_B 81 PPLEDGAMPSARLRKLEVEANNAFDQYRDLYF---------------------------------EGGVSSVYLWDLDHG 127 (244)
T ss_dssp SCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHH---------------------------------SSSEEEEEEEEETTE
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHh---------------------------------CCCcceEEEEecCCC
Confidence 99999999999999999999999999999998 889999999999999
Q ss_pred eEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCceeeEeeeeeeEeeeeccccCCCc
Q psy4617 167 FAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVSDTS 246 (314)
Q Consensus 167 Fa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g~~~LsGslTrq~E~~~~~~~~~ 246 (314)
|||||||||..+++++..|+|||||||||+++++|+++||||||||||+|++++.+.|.|+|||+||||+|+++++.+..
T Consensus 128 Fag~vLiKK~~~~~~~~~G~WdSiHV~Ev~~~~s~~~a~YklTSTvml~l~~~~~~~g~~~LsGsltRq~E~~~~v~~~~ 207 (244)
T 3aa0_B 128 FAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSS 207 (244)
T ss_dssp EEEEEEEEEECCTTSSEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEECSSSS
T ss_pred ceEEEEEEeccCcccccccceeeeeEEEEeeccCCCceeEEEeeEEEEEeccCCCCcccEecceeeeehhhcccccCCCh
Confidence 99999999998887778999999999999998778889999999999999999888999999999999999999999999
Q ss_pred hhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccc
Q psy4617 247 PHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLR 283 (314)
Q Consensus 247 ~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lR 283 (314)
+||+|||+|||+||++|||+|++|||+||||||++||
T Consensus 208 ~Hi~NiG~mIEdmE~~~R~~L~~VYf~Ktkdiv~~lR 244 (244)
T 3aa0_B 208 PHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhC
Confidence 9999999999999999999999999999999999998
No 4
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=100.00 E-value=7.2e-51 Score=379.95 Aligned_cols=239 Identities=18% Similarity=0.268 Sum_probs=210.2
Q ss_pred cc-cchHHHHHHHHhcCCchhHHHHHHhHhhcCcc---hhHHhhhcc-----Cc--cceeeeccccCcceeecccCCCC-
Q psy4617 7 YT-ELQMDCALDLMRRLPPQQIEKNLSDLIDLVPG---LCEDLLSSV-----DQ--PLKIARDKEMGKDYLLCDYNRDG- 74 (314)
Q Consensus 7 m~-~~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~---l~edLLssV-----D~--PLki~~d~~~~k~yL~CdyNRDg- 74 (314)
|| ++++++|++||||+||.++++++++|+.|+|+ |+++|++++ || ||+| +.++++||+|+|||||
T Consensus 8 ms~~~k~~ia~~ll~~aPPge~~~v~~Dl~~L~~dd~ll~~~l~~a~~~yn~dq~~pl~v---~~~~~~~li~~yn~~~~ 84 (286)
T 3aa0_A 8 VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI---EGYDDQVLITEHGDLGN 84 (286)
T ss_dssp CCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHHHTTCEECC---TTSSSCEECCGGGEEET
T ss_pred cChHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcceeEEe---cCCCCcEEEEeccccCC
Confidence 88 56999999999999999999999999999998 999999999 99 9998 7789999999999998
Q ss_pred CCCCCCCCCCcC---CC---CCC--CCCChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhhhhHHHh
Q psy4617 75 DSYRSPWSNVYD---PP---LED--GSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDANHAFDQY 146 (314)
Q Consensus 75 DSYRSPwSn~yd---pp---l~~--~~~ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN~~fd~y 146 (314)
++|+.||+++++ ++ +.+ +..|+..+|.+++.+|.+|+.||+.||
T Consensus 85 ~~Y~dp~s~~~f~~Dh~~~~~~d~~~~~ps~~l~~~r~~~~~~l~~Y~~~~Y---------------------------- 136 (286)
T 3aa0_A 85 GRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHY---------------------------- 136 (286)
T ss_dssp TEEEETTTTEEEEEETTTTEEEEEEECCCCCTTHHHHHHHHHHHHHHHHHHS----------------------------
T ss_pred CceeCcccCceEEeecccceeccCCCCCCchhhHHHHHHHHHHHHHHHHHHc----------------------------
Confidence 899999999866 65 222 347888899999999999999999998
Q ss_pred hhhhccCCccceeeeecCC--ceEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCce
Q psy4617 147 REMYFEGGVSSVYLWDLDH--GFAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASG 224 (314)
Q Consensus 147 r~~~~egg~sSvY~wd~~~--gFa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g 224 (314)
+||++|||.||+++ +|++|++.+|- .+.+-..|+|+|||||+|.+. .|+||++|++.+..-.+ |
T Consensus 137 -----~~g~~sVY~~d~e~~~~~a~~I~~~k~-~~~nfw~G~W~Si~~~~v~~~------~~~l~G~i~v~vHY~Ed--G 202 (286)
T 3aa0_A 137 -----PNGFCTVYGKSIDGQQTIIACIESHQF-QPKNFWNGRWRSEWKFTITPP------TAQVAAVLKIQVHYYED--G 202 (286)
T ss_dssp -----SSCEEEEEEEEETTEEEEEEEEEEEEE-EGGGTEEEEEEEEEEEEEETT------EEEEEEEEEEEEEECTT--E
T ss_pred -----CCCceEEEecccCCCceEEEEEEEecc-CCccccCceeeeEEEEEeccc------cceEEEEEEEEEEEecC--c
Confidence 56777888888776 79999999996 222224899999999999751 49999999999977654 8
Q ss_pred eeEeeeeeeEeeeeccccCCCchhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccccCCcccHHH
Q psy4617 225 KMNLGGSLTRQIEMDAQVSDTSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQ 292 (314)
Q Consensus 225 ~~~LsGslTrq~E~~~~~~~~~~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lRs~~~~~~~~ 292 (314)
++.|.+ |||+|++.++.+...|+.|||+|||++|+++|+.|+++||+|++++++.||+..+++..+
T Consensus 203 NV~L~~--~k~~~~~~~~~~~~~~a~~i~~~Ie~~E~~~~~~L~e~y~~ls~~~fk~LRR~LPvtr~k 268 (286)
T 3aa0_A 203 NVQLVS--HKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRTK 268 (286)
T ss_dssp EEEEEE--EEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCCSSCTTSSC
T ss_pred eEEEee--ccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCccccc
Confidence 999998 899999999988889999999999999999999999999999999999999988876543
No 5
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=99.81 E-value=5.4e-21 Score=178.75 Aligned_cols=166 Identities=23% Similarity=0.258 Sum_probs=119.8
Q ss_pred hhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcCCCCCCCCCChhHHHHHHH
Q psy4617 25 QQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEI 104 (314)
Q Consensus 25 ~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~ydppl~~~~~ps~~lr~Le~ 104 (314)
++++..|+-+=.|.|..++.=|+.+=. -+|+=.-+-| .++|+||+...++..++.||+|
T Consensus 4 ~~~daaLdLlRRLpP~~ie~nl~~l~~-----L~P~L~edLL----------------ssVDqPLki~~d~~~~k~yL~C 62 (277)
T 3lk4_B 4 QQLDCALDLMRRLPPQQIEKNLSDLID-----LVPSLCEDLL----------------SSVDQPLKIARDKVVGKDYLLC 62 (277)
T ss_dssp CHHHHHHHHHTTSCGGGHHHHHHHHHH-----HCGGGHHHHH----------------HHSCCCCEEEEETTTTEEEEEC
T ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHHh-----hChHhHHHHH----------------HhCCcCceEeEccccCCeeEee
Confidence 357778887888889877776665421 1233222333 6799999999999999999999
Q ss_pred HHhhhhhhhhccc----cC----CCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecCCceEEEEEEEec
Q psy4617 105 DANHAFDQYREMY----FE----GGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKKA 176 (314)
Q Consensus 105 d~N~~~DsYR~~Y----y~----Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~gFa~v~L~kk~ 176 (314)
||||++||||||| || |.+||..|+. |||.||++||+||+ +|| +||.+|||||+.+
T Consensus 63 DYNRDgDSYRSPwSNkY~Ppl~dg~~PS~~LRk-----LEi~aN~aFd~Yr~---------lYY---eGGvSSVYlWdld 125 (277)
T 3lk4_B 63 DYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRK-----LEVEANNAFDQYRD---------LYF---EGGVSSVYLWDLD 125 (277)
T ss_dssp GGGEETTEEECTTTCCEESCCSSCCCCCHHHHH-----HHHHHHHHHHHHHH---------HHH---SSSEEEEEEEEET
T ss_pred cccCCCccccCCCcCCcCCCCcCCCCCcHHHHH-----HHHHHHHHHHHHHH---------HHh---CCCeeEEEEEecC
Confidence 9999999999994 44 4555555554 99999999999999 998 9999999999986
Q ss_pred CCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCC-ceeeEeeeeeeEeee
Q psy4617 177 GDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIA-SGKMNLGGSLTRQIE 237 (314)
Q Consensus 177 ~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~-~g~~~LsGslTrq~E 237 (314)
+ +|+|||+.-|. +.. ++...-.+.|+.+++++....+ ...-.|..++-=+++
T Consensus 126 ~----gFagvvLiKK~--~~~---~~~~~G~WDSIHV~Ev~~~~~~~~~~YklTSTVmL~l~ 178 (277)
T 3lk4_B 126 H----GFAGVILIKKA--GDG---SKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQ 178 (277)
T ss_dssp T----EEEEEEEEEEE--CCC---GGGEEEEEEEEEEEEEEC----CEEEEEEEEEEEEEEE
T ss_pred C----CeEEEEEEEec--CCC---ccccccceeeeEEEEEeeccCCceeEEEEeEEEEEEEE
Confidence 3 39999988773 221 2346788999999998643221 123444444444443
No 6
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=99.81 E-value=9.6e-21 Score=174.60 Aligned_cols=167 Identities=23% Similarity=0.255 Sum_probs=125.0
Q ss_pred chhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcCCCCCCCCCChhHHHHHH
Q psy4617 24 PQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLE 103 (314)
Q Consensus 24 P~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~ydppl~~~~~ps~~lr~Le 103 (314)
-++++..|+-+=.|.|..++.-|+.+=. -+|+-..+-| .++|+||+...++..++.||.
T Consensus 3 ~~~~d~aLdL~RRLpP~~ie~nl~~l~~-----L~Pdl~edLL----------------ssVDqPLki~~d~~~~k~yL~ 61 (244)
T 3aa0_B 3 DQQLDCALDLMRRLPPQQIEKNLSDLID-----LVPSLCEDLL----------------SSVDQPLKIARDKVVGKDYLL 61 (244)
T ss_dssp HHHHHHHHHHHTTSCGGGHHHHHHHHHH-----HCGGGHHHHH----------------HHSCCCCEEEEETTTTEEEEE
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHH-----hChHHHHHHH----------------hccCCcceEeeccccCCeeee
Confidence 4677888888888999988887776522 1233222333 579999999999999999999
Q ss_pred HHHhhhhhhhhccc----cC----CCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecCCceEEEEEEEe
Q psy4617 104 IDANHAFDQYREMY----FE----GGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKK 175 (314)
Q Consensus 104 ~d~N~~~DsYR~~Y----y~----Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~gFa~v~L~kk 175 (314)
|||||++||||||| || |.+||..|+. +|+.||++||+||+ +|+ +||.+|||||+.
T Consensus 62 CdYNRDgDSYRSPwSN~Y~P~~~dg~~PS~~LR~-----LEi~aN~~Fd~Yr~---------lYy---eGGvSSVYlWdl 124 (244)
T 3aa0_B 62 CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRK-----LEVEANNAFDQYRD---------LYF---EGGVSSVYLWDL 124 (244)
T ss_dssp CGGGEETTEEECTTTCCEESCCSSCCCCCHHHHH-----HHHHHHHHHHHHHH---------HHH---SSSEEEEEEEEE
T ss_pred ecccCCCccccCCCCCCcCCCCCCCCCChHHHHH-----HHHHHHHHHHHHHH---------HHh---CCCcceEEEEec
Confidence 99999999999994 54 4556666654 99999999999999 998 999999999998
Q ss_pred cCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCce-eeEeeeeeeEeee
Q psy4617 176 AGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASG-KMNLGGSLTRQIE 237 (314)
Q Consensus 176 ~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g-~~~LsGslTrq~E 237 (314)
+ + +|+|||+.-|.. .. ++.....+.|+..++++....+.. .-.|+.++-=+++
T Consensus 125 d-~---gFag~vLiKK~~---~~--~~~~~G~WdSiHV~Ev~~~~s~~~a~YklTSTvml~l~ 178 (244)
T 3aa0_B 125 D-H---GFAGVILIKKAG---DG--SKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQ 178 (244)
T ss_dssp T-T---EEEEEEEEEEEC---CT--TSSEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEE
T ss_pred C-C---CceEEEEEEecc---Cc--ccccccceeeeeEEEEeeccCCCceeEEEeeEEEEEec
Confidence 6 3 399999988832 11 234688999999999976533222 3445555444443
No 7
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=99.81 E-value=7.4e-21 Score=178.67 Aligned_cols=169 Identities=20% Similarity=0.208 Sum_probs=121.2
Q ss_pred chhHHHHHHhHhhcCcchhHHhhhccCccceeeeccccCcceeecccCCCCCCCCCCCCCCcCCCCCCCCCChhHHHHHH
Q psy4617 24 PQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLE 103 (314)
Q Consensus 24 P~~ie~nl~~l~~L~p~l~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSn~ydppl~~~~~ps~~lr~Le 103 (314)
-++++..|+-+=.|.|.-++.=|+.+=. -+|+-.-+ .-..+|+||+...++..++.||+
T Consensus 21 ~~~~daaLdLlRRLpP~~ie~nL~~Li~-----L~Pdl~ed----------------LLssVDqPLki~~d~~~~k~yL~ 79 (290)
T 4akr_B 21 EKQLSCCLDLMRRLPPSQIEDNLAGLLD-----LVPDLTED----------------LLSSIDQPLKVAYDAVSKKDYLL 79 (290)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHH-----HCGGGHHH----------------HHHHCCCCCEEEEETTTTEEEEE
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHh-----hChHhHHH----------------HHHhCCCcceEeEccccCCeEEe
Confidence 3567888888888889988877766422 12332222 34689999999999999999999
Q ss_pred HHHhhhhhhhhcc----ccC----CCCCCcccccCCCchhhhhhhhhHHHhhhhhccCCccceeeeecCCceEEEEEEEe
Q psy4617 104 IDANHAFDQYREM----YFE----GGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKK 175 (314)
Q Consensus 104 ~d~N~~~DsYR~~----Yy~----Ggvss~yl~dl~~g~lEv~aN~~fd~yr~~~~egg~sSvY~wd~~~gFa~v~L~kk 175 (314)
|||||++|||||| ||| |.+||..||. |||.||++||+||+ +|| +||.+|||||+.
T Consensus 80 CDYNRDGDSYRSPwSNkY~Ppl~dg~~PS~~LRk-----LEi~aN~aFd~Yr~---------lYY---eGGvSSVYlWdl 142 (290)
T 4akr_B 80 CDYNRDADSYRSPWSNKYDPPLSGACYPSSKLRD-----IEVQANEIFEIYLN---------LYF---EGGVSSVYCWDL 142 (290)
T ss_dssp CGGGEETTEEECTTTCCEESCCSSCCCCCHHHHH-----HHHHHHHHHHHHHH---------HHH---SSSEEEEEEEEE
T ss_pred ecccCCCccccCCCCCCcCCCCCCCCCChHHHHH-----HHHHHHHHHHHHHH---------HHh---cCCeeEEEEEec
Confidence 9999999999999 444 4555555554 99999999999999 998 999999999998
Q ss_pred cCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEeecCCCceeeEeeeeeeEee
Q psy4617 176 AGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQI 236 (314)
Q Consensus 176 ~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~~~~~~g~~~LsGslTrq~ 236 (314)
++ +|+|||+.-|...-. .+|....=.+.|+.+++++........-.|..++-=++
T Consensus 143 d~----gFagvvLiKK~~~~~--~~g~~~~G~WDSIHV~Ev~~~~~~~a~YklTSTVmL~L 197 (290)
T 4akr_B 143 DD----NFAAVVLMKKTQDQS--KKGQPMRGTWDSIHVVEVKLGKKDKAVYKLTSTVMLSI 197 (290)
T ss_dssp TT----EEEEEEEEEEEEC--------CEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEE
T ss_pred CC----CceEEEEEEeccCcc--ccccCCCCceeeeEEEEEeecCCCceEEEEeEEEEEEE
Confidence 64 499999988843321 11223456788999999865432112333444443333
No 8
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=98.38 E-value=6.3e-06 Score=77.33 Aligned_cols=231 Identities=16% Similarity=0.227 Sum_probs=142.7
Q ss_pred cccchHHHHHHHHhcCCchhHHHHHHhHhhcCcc---hhHHhhhc-----cCccceeeeccccCcceeecccCCCCCCCC
Q psy4617 7 YTELQMDCALDLMRRLPPQQIEKNLSDLIDLVPG---LCEDLLSS-----VDQPLKIARDKEMGKDYLLCDYNRDGDSYR 78 (314)
Q Consensus 7 m~~~~~d~aLdLlRRLpP~~ie~nl~~l~~L~p~---l~edLLss-----VD~PLki~~d~~~~k~yL~CdyNRDgDSYR 78 (314)
|+ +++.-|-.++..=||-++.+-+++|..|.++ +-+.+... .+|-..|.-. |.+.|.|.||+-|+
T Consensus 4 ~~-ek~~i~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~---g~~viis~~n~l~~--- 76 (281)
T 4akr_A 4 NQ-ELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTS---KGSALITKEGEISN--- 76 (281)
T ss_dssp HH-HHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEET---TEEEECCSTTEEET---
T ss_pred hH-HHHHHHHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeC---CCcEEEeeccccCC---
Confidence 44 5889999999999999999999999999865 22222211 2333333222 33499999998554
Q ss_pred CCCCCCcCCCCCCCCC------------------ChhHHHHHHHHHhhhhhhhhccccCCCCCCcccccCCCchhhhhhh
Q psy4617 79 SPWSNVYDPPLEDGSM------------------PSERLRKLEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAEIDAN 140 (314)
Q Consensus 79 SPwSn~ydppl~~~~~------------------ps~~lr~Le~d~N~~~DsYR~~Yy~Ggvss~yl~dl~~g~lEv~aN 140 (314)
++|+-|-....+ |...++.+-.....
T Consensus 77 ----~ry~Dp~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~-------------------------------- 120 (281)
T 4akr_A 77 ----NEYLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDE-------------------------------- 120 (281)
T ss_dssp ----TEEEEGGGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHH--------------------------------
T ss_pred ----CeEEccCCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHH--------------------------------
Confidence 333322211111 12233333334444
Q ss_pred hhHHHhhhhhccCCccceeeeecCCc--eEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcceeEEEeeEEEEEEee
Q psy4617 141 HAFDQYREMYFEGGVSSVYLWDLDHG--FAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQT 218 (314)
Q Consensus 141 ~~fd~yr~~~~egg~sSvY~wd~~~g--Fa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~~~YklTSTv~L~l~~ 218 (314)
++..|.+-.|.+|.++||-=..++. ++-|+.=.+- .+.+--.|.|-|.=.|.|.+.+ .+-.++.+|-+.+--
T Consensus 121 -~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~-np~NFwnGrWrS~w~~~~~~~~----~~l~~~G~I~V~vHY 194 (281)
T 4akr_A 121 -EATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIY-KPNAFYSGRWRSVWTCTFKPGS----GNVTSNGKVQVNVHY 194 (281)
T ss_dssp -HHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEE-EGGGTEEEEEEEEEEEEECTTS----SEEEEEEEEEEEEEE
T ss_pred -HHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCcc-CcccccCCceEEEEEEEecCCC----CeEEECCEEEEEEEE
Confidence 4444444444566666664333332 3333322221 2222238999999999987542 233344887776644
Q ss_pred cCCCceeeEeeeeeeEeeeeccccCCCchhhHhhhhHHHHHHHHHHhhhhhhhccchhHHHhccccCCcccH
Q psy4617 219 NKIASGKMNLGGSLTRQIEMDAQVSDTSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSV 290 (314)
Q Consensus 219 ~~~~~g~~~LsGslTrq~E~~~~~~~~~~Hi~NiG~lIE~~E~~mR~~L~~VYf~KtkdIv~~lRs~~~~~~ 290 (314)
=.+ |.+.|..+ +.++.+.++++...-..+|-++|++.|+++...|++-|..-....+..||..-++..
T Consensus 195 yED--GNVqL~s~--k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~l~~~~~~ls~~tfK~LRR~LPvTR 262 (281)
T 4akr_A 195 FED--GNVQLNTV--TQKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPINR 262 (281)
T ss_dssp CSS--EEEEEEEE--EEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCSSCTTS
T ss_pred eec--ceEEEEec--cccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhccCCCCC
Confidence 333 66666544 344455555554456679999999999999999999999999889999998776653
No 9
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=97.75 E-value=1.2e-05 Score=75.07 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCCCCCCChhHHHHHHHHHhhhh-hhhhcc----cc---C--------C-CCCCcccccCCCchhhhhhhhhHHHhhhhh
Q psy4617 88 PLEDGSMPSERLRKLEIDANHAF-DQYREM----YF---E--------G-GVSSVYLWDLDHGFAEIDANHAFDQYREMY 150 (314)
Q Consensus 88 pl~~~~~ps~~lr~Le~d~N~~~-DsYR~~----Yy---~--------G-gvss~yl~dl~~g~lEv~aN~~fd~yr~~~ 150 (314)
||+. |.....+|.|+||+++ +.|++| +| + + ..|+..+ +.+++.||++|+.|++
T Consensus 64 pl~v---~~~~~~~li~~yn~~~~~~Y~dp~s~~~f~~Dh~~~~~~d~~~~~ps~~l-----~~~r~~~~~~l~~Y~~-- 133 (286)
T 3aa0_A 64 PVKI---EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESAL-----KQWRDACDSALRAYVK-- 133 (286)
T ss_dssp EECC---TTSSSCEECCGGGEEETTEEEETTTTEEEEEETTTTEEEEEEECCCCCTT-----HHHHHHHHHHHHHHHH--
T ss_pred eEEe---cCCCCcEEEEeccccCCCceeCcccCceEEeecccceeccCCCCCCchhh-----HHHHHHHHHHHHHHHH--
Confidence 6554 4455678999999998 799887 33 1 1 1333333 3478999999999998
Q ss_pred ccCCccceeeeecCCceEEEEEEEecCCCCCCCcceeeeeEEEEEeecCCCcc-eeEEEeeEEEEEEeecCCCceeeEee
Q psy4617 151 FEGGVSSVYLWDLDHGFAGVILIKKAGDGSRKIQGCWDSIHVVEVQEKPTGRN-AHYKLTSTVMLWLQTNKIASGKMNLG 229 (314)
Q Consensus 151 ~egg~sSvY~wd~~~gFa~v~L~kk~~~~~~~~~G~wdSIHV~Ev~~~~~~~~-~~YklTSTv~L~l~~~~~~~g~~~Ls 229 (314)
.|| ++|.+|||+|+.++++ .|++|+.+=+ ..+ ++ ..=++.|...+.+... ...|.
T Consensus 134 -------~~Y---~~g~~sVY~~d~e~~~--~~a~~I~~~k---~~~----~nfw~G~W~Si~~~~v~~~-----~~~l~ 189 (286)
T 3aa0_A 134 -------DHY---PNGFCTVYGKSIDGQQ--TIIACIESHQ---FQP----KNFWNGRWRSEWKFTITPP-----TAQVA 189 (286)
T ss_dssp -------HHS---SSCEEEEEEEEETTEE--EEEEEEEEEE---EEG----GGTEEEEEEEEEEEEEETT-----EEEEE
T ss_pred -------HHc---CCCceEEEecccCCCc--eEEEEEEEec---cCC----ccccCceeeeEEEEEeccc-----cceEE
Confidence 787 7899999999876332 2555554433 122 22 4556667777776541 24566
Q ss_pred eeeeEeee
Q psy4617 230 GSLTRQIE 237 (314)
Q Consensus 230 GslTrq~E 237 (314)
|++--++.
T Consensus 190 G~i~v~vH 197 (286)
T 3aa0_A 190 AVLKIQVH 197 (286)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 77666553
No 10
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=33.32 E-value=7 Score=31.39 Aligned_cols=19 Identities=32% Similarity=0.712 Sum_probs=14.1
Q ss_pred HHhcCCchhHHHHHHhHhh
Q psy4617 18 LMRRLPPQQIEKNLSDLID 36 (314)
Q Consensus 18 LlRRLpP~~ie~nl~~l~~ 36 (314)
++|||||.-.|+.+-..++
T Consensus 13 VIRrLPP~Ltee~F~~~l~ 31 (97)
T 2l08_A 13 VIRRLPPGLTKEQLEEQLR 31 (97)
T ss_dssp EEECCCSCSCHHHHTTTTS
T ss_pred EEeCCCCCCCHHHHHHHhC
Confidence 4799999888887655444
No 11
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=24.87 E-value=68 Score=26.46 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=34.0
Q ss_pred hhhHHHhhhhhccCC-ccceeeeecCCc-eEEEEEEEecCCCC----------CCCcceeeeeEEEEEee
Q psy4617 140 NHAFDQYREMYFEGG-VSSVYLWDLDHG-FAGVILIKKAGDGS----------RKIQGCWDSIHVVEVQE 197 (314)
Q Consensus 140 N~~fd~yr~~~~egg-~sSvY~wd~~~g-Fa~v~L~kk~~~~~----------~~~~G~wdSIHV~Ev~~ 197 (314)
.+....|.+ +-| +..+|..+-+.+ .+|||||+....-. +.+.-.=-+.++|+|.+
T Consensus 31 ~~lA~si~~---epGLiwKiWte~e~t~~aGGiYLFes~~~AeaY~~~h~arl~~~Gi~~i~~kiFdin~ 97 (113)
T 2hiq_A 31 KPLAESINQ---EPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNE 97 (113)
T ss_dssp HHHHHHHTT---STTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHHHHGGGTCCCCEEEEEEECH
T ss_pred HHHHHHHhc---CCCcEEEEEEEcCCCCeeeEEEEeCCHHHHHHHHHHHHHHHHHcCCcceEEEEEeccc
Confidence 345556665 556 677888777665 89999999763210 11221344667777764
No 12
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.18 E-value=26 Score=25.52 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=22.8
Q ss_pred CCchhHHHHHHhHhhcCcchhHHhhhcc
Q psy4617 22 LPPQQIEKNLSDLIDLVPGLCEDLLSSV 49 (314)
Q Consensus 22 LpP~~ie~nl~~l~~L~p~l~edLLssV 49 (314)
=||.-.|..+..|..++|++..+++.+|
T Consensus 4 ~~~~~~ee~l~~L~emFP~ld~~~I~~v 31 (59)
T 1wgl_A 4 GSSGCSEEDLKAIQDMFPNMDQEVIRSV 31 (59)
T ss_dssp CSSSSCHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHHHHHH
Confidence 3677788999999999999888877654
No 13
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=21.54 E-value=20 Score=28.07 Aligned_cols=19 Identities=32% Similarity=0.746 Sum_probs=15.8
Q ss_pred HHhcCCchhHHHHHHhHhh
Q psy4617 18 LMRRLPPQQIEKNLSDLID 36 (314)
Q Consensus 18 LlRRLpP~~ie~nl~~l~~ 36 (314)
.+|||||.-.|+.+-..++
T Consensus 5 VIRrLPP~LteeeF~~~l~ 23 (91)
T 1uw4_A 5 VIRRLPPTLTKEQLQEHLQ 23 (91)
T ss_dssp EEEEECTTCCHHHHHHHHC
T ss_pred EEeCCCCCCCHHHHHHHhc
Confidence 4799999999988887765
Done!