RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4617
(314 letters)
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP,
actin filaments, uncapping, actin-filament regulators,
protein-protein comple, actin capping, actin- binding;
1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B
1izn_B
Length = 277
Score = 445 bits (1145), Expect = e-159
Identities = 218/306 (71%), Positives = 245/306 (80%), Gaps = 33/306 (10%)
Query: 8 TELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLL 67
++ Q+DCALDLMRRLPPQQIEKNLSDLIDLVP LCEDLLSSVDQPLKIARDK +GKDYLL
Sbjct: 2 SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL 61
Query: 68 CDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYL 127
CDYNRDGDSYRSPWSN YDPPLEDG+MPS RLRKLE++AN+AFDQYR++YFEGGVSSVYL
Sbjct: 62 CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL 121
Query: 128 WDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSRKIQGCW 187
WDLDHGFA GVILIKKAGDGS+KI+GCW
Sbjct: 122 WDLDHGFA---------------------------------GVILIKKAGDGSKKIKGCW 148
Query: 188 DSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVSDTSP 247
DSIHVVEVQEK +GR AHYKLTSTVMLWLQTNK SG MNLGGSLTRQ+E D VSD+SP
Sbjct: 149 DSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSP 208
Query: 248 HIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQQALKQDLAAALQK 307
HIANIGR+VE+MENKIR+TLNEIYFGKTKDIVNGLRS+ + Q + L+++L+ L +
Sbjct: 209 HIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSIDAIPDNQKYKQLQRELSQVLTQ 268
Query: 308 RNAKTE 313
R +
Sbjct: 269 RQIYIQ 274
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A
{Dictyostelium discoideum}
Length = 290
Score = 427 bits (1098), Expect = e-152
Identities = 154/304 (50%), Positives = 191/304 (62%), Gaps = 37/304 (12%)
Query: 8 TELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLL 67
TE Q+ C LDLMRRLPP QIE NL+ L+DLVP L EDLLSS+DQPLK+A D KDYLL
Sbjct: 20 TEKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLL 79
Query: 68 CDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYL 127
CDYNRD DSYRSPWSN YDPPL PS +LR +
Sbjct: 80 CDYNRDADSYRSPWSNKYDPPLSGACYPSSKLRDI------------------------- 114
Query: 128 WDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSRK---IQ 184
E+ AN F+ Y +YFEGGVSSVY WDLD FA V+L+KK D S+K ++
Sbjct: 115 --------EVQANEIFEIYLNLYFEGGVSSVYCWDLDDNFAAVVLMKKTQDQSKKGQPMR 166
Query: 185 GCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVSD 244
G WDSIHVVEV+ A YKLTSTVML ++T+ +GK+NL GSLTRQ E + ++
Sbjct: 167 GTWDSIHVVEVKLGK-KDKAVYKLTSTVMLSIETDNDNTGKVNLAGSLTRQDEKEYTFNE 225
Query: 245 TSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQQALKQDLAAA 304
H NIG+MVE+ME+K+R TL IYFGKTK++VN LR+ S + ++ L + +A
Sbjct: 226 VDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEVVNTLRNATGNSELEKRKNLSNQIGSA 285
Query: 305 LQKR 308
+ R
Sbjct: 286 IGNR 289
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping
protein, barbed END regulation, carmil family
conformational change; 1.70A {Gallus gallus} PDB:
3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Length = 244
Score = 421 bits (1085), Expect = e-151
Identities = 212/276 (76%), Positives = 230/276 (83%), Gaps = 33/276 (11%)
Query: 8 TELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLL 67
++ Q+DCALDLMRRLPPQQIEKNLSDLIDLVP LCEDLLSSVDQPLKIARDK +GKDYLL
Sbjct: 2 SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL 61
Query: 68 CDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYL 127
CDYNRDGDSYRSPWSN YDPPLEDG+MPS RLRKLE++AN+AFDQYR++YFEGGVSSVYL
Sbjct: 62 CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL 121
Query: 128 WDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSRKIQGCW 187
WDLDHGFA GVILIKKAGDGS+KI+GCW
Sbjct: 122 WDLDHGFA---------------------------------GVILIKKAGDGSKKIKGCW 148
Query: 188 DSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVSDTSP 247
DSIHVVEVQEK +GR AHYKLTSTVMLWLQTNK SG MNLGGSLTRQ+E D VSD+SP
Sbjct: 149 DSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSP 208
Query: 248 HIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLR 283
HIANIGR+VE+MENKIR+TLNEIYFGKTKDIVNGLR
Sbjct: 209 HIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLR 244
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A
{Dictyostelium discoideum}
Length = 281
Score = 116 bits (292), Expect = 7e-31
Identities = 43/295 (14%), Positives = 87/295 (29%), Gaps = 50/295 (16%)
Query: 8 TELQMDCALDLMRRLPPQQIEKNLSDLIDLVPG---LCEDLLSS-----VDQPLKIARDK 59
+ + A + + PP + + +SD+ L+P L S+ Q + + +
Sbjct: 4 NQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSV---Q 60
Query: 60 EMGKDYLLCDYNRDGDS----YRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYRE 115
L+ ++ ++ YD ++ + R + +QYR
Sbjct: 61 TSKGSALITKEGEISNNEYLDPKNKQVITYDHIKQEVTGE----RSASGEIEQDIEQYRA 116
Query: 116 MYFEGGVSSVYLWDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKK 175
+ E +Y Y+ GVS+VY + G + I
Sbjct: 117 AFDE----------------------EATKYCNEYYPNGVSAVYGTKVSEGIKITVCIST 154
Query: 176 AGDGSRKI-QGCWDSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTR 234
G W S+ + T +Q N N+ +
Sbjct: 155 CIYKPNAFYSGRWRSVWTCTFKPGSG--------NVTSNGKVQVNVHYFEDGNVQLNTVT 206
Query: 235 QIEMDAQVSDTSPHIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLS 289
Q + + +D N + + + E + L+ Y LR P++
Sbjct: 207 QKQTTSPSADAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTTFKALRRALPIN 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 56/346 (16%), Positives = 116/346 (33%), Gaps = 85/346 (24%)
Query: 6 NYTELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQ--PLKIARDKEMGK 63
T + +D L P +++ L +D P +DL V P +++
Sbjct: 285 TTTHISLD---HHSMTLTPDEVKSLLLKYLDCRP---QDLPREVLTTNPRRLS------- 331
Query: 64 DYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMY-----F 118
++ + RDG + W +V L ++ L LE +YR+M+ F
Sbjct: 332 --IIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLE------PAEYRKMFDRLSVF 381
Query: 119 EGGV---SSVY--LW-DLDHGFAEIDANHAFDQYR--EMYFEGGVSSVYLWDLDHGFAGV 170
+ + +W D+ + N +Y E + S+ L+
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSIYLE------ 434
Query: 171 ILIKKAGDGS--RKI------QGCWDSIHVVEVQE------------KPTGRNAHYKLTS 210
+ +K + + R I +DS ++ K L
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 211 TVML---WLQTNKI--ASGKMNLGGSLT---RQIEM-DAQVSDTSPHIANIGRMVEEMEN 261
V L +L+ KI S N GS+ +Q++ + D P R+V + +
Sbjct: 495 MVFLDFRFLE-QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVNAILD 550
Query: 262 KIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQQALKQDLAAALQK 307
+ + K D++ + +++ +A+ ++ +Q+
Sbjct: 551 FLPKIEENLICSKYTDLL------R-IALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.097
Identities = 35/272 (12%), Positives = 75/272 (27%), Gaps = 86/272 (31%)
Query: 100 RKLEIDANHAFDQYREM---YFEGGVSSVYLWDLD-HGFA---EIDANHAFDQYREM--- 149
+E FDQ + FE + YL D H A + + + +E+
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFE----NCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 150 YFEGGVSSVYLWDLDHGFAGVILIKKAGDGSRKI------QG----CWD----------- 188
Y + + +D A L + G+G+ ++ QG ++
Sbjct: 126 YITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 189 ---------SIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGS-------- 231
+ + E+ + ++ WL+ K L
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 232 LTRQI---------------EMDAQVSDTSPHIANI--------GRMVEEMENKIRNTLN 268
+ Q+ E+ + + + H + E +R +
Sbjct: 243 VI-QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI- 300
Query: 269 EIYFGKTKDIVNGLRSLQPLSVQQAQQALKQD 300
+ F I G+R + ++ +D
Sbjct: 301 TVLFF----I--GVRCYEAYPNTSLPPSILED 326
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A
{Humicola insolens} PDB: 3zxj_A* 3zxl_A*
Length = 542
Score = 31.1 bits (70), Expect = 0.53
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 58 DKEMGKDYLLCDYNRDGDSYRSPWSNVY----DPPLEDGSMPSE-RLRKLEIDANHAFDQ 112
+ + Y + SP N + P + + DA D
Sbjct: 91 RRSNDRFYWYGCVEGRTYLWTSPGGNALANNGEVPPSAWNWQHTATIDNCYYDAGLLIDD 150
Query: 113 YREMYFEGGVSSVYLWDLD 131
MY G ++ + L
Sbjct: 151 DDTMYIAYGNPTINVAQLS 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 28.9 bits (65), Expect = 2.3
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 40 GLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSER 98
GL + ++D KI R+++ +CD WS DP ++G S+R
Sbjct: 332 GLFSEDGVTLDDIRKIERNRQPPDSGPMCDL---------LWS---DPQPQNGRSISKR 378
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 28.3 bits (64), Expect = 3.3
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 40 GLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSER 98
GL + ++D KI R+++ +CD WS DP ++G S+R
Sbjct: 179 GLFSEDGVTLDDIRKIERNRQPPDSGPMCDL---------LWS---DPQPQNGRSISKR 225
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 27.8 bits (63), Expect = 4.3
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 104 IDANHAFDQYREMYFEGGVSSVYLWDLDHG 133
+ + F YR+ + ++H
Sbjct: 138 FEVTNDFLMYRKGIYSSTSCHKTPDKVNHA 167
Score = 27.8 bits (63), Expect = 4.3
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 137 IDANHAFDQYREMYFEGGVSSVYLWDLDHG 166
+ + F YR+ + ++H
Sbjct: 138 FEVTNDFLMYRKGIYSSTSCHKTPDKVNHA 167
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 27.8 bits (62), Expect = 5.8
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 62 GKDYLLCDYNRDGDSYRSPWSN-----VYDPPLEDGSMPSERLRKLEIDANHAFDQYREM 116
G++Y N D+ RSP S Y ++ G M SE + + F +
Sbjct: 369 GRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS---NYPTNFANGNPI 425
Query: 117 YFEGGVSS 124
+ +
Sbjct: 426 MYANSKGT 433
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 27.2 bits (61), Expect = 6.2
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 40 GLCEDLLSSVDQPLKIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSER 98
GL D +++ I R + +D + W+ DP +G PS+R
Sbjct: 183 GLPSDPSATLSDFKNIDRFAQPPRDGAFMEL---------LWA---DPQEANGMGPSQR 229
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Length = 195
Score = 26.9 bits (60), Expect = 6.8
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 18 LMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYL 66
L R + +NL +I + E ++ R E + +
Sbjct: 82 LDRNITVATFRENLETMIHEIGS--EKVILITPPYADSGRRPERPQTRI 128
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 27.2 bits (61), Expect = 7.1
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 104 IDANHAFDQYREMYFEGGVSSVYLWDLDHG 133
I A+ F YR +++G + +H
Sbjct: 152 IAASDDFAFYRGGFYDGECGA----APNHA 177
Score = 27.2 bits (61), Expect = 7.1
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 137 IDANHAFDQYREMYFEGGVSSVYLWDLDHG 166
I A+ F YR +++G + +H
Sbjct: 152 IAASDDFAFYRGGFYDGECGA----APNHA 177
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor,
translation, antitumor protein; 1.15A {Mus musculus}
SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Length = 129
Score = 26.3 bits (58), Expect = 7.2
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 254 RMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQ-QALKQDLAAALQKRNAKT 312
+ V + +I L E Y + DI L+ L V + + + + L+
Sbjct: 1 QPVNHLVKEIDMLLKE-YLL-SGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESA 58
Query: 313 EN 314
Sbjct: 59 FK 60
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle,
DNA- binding, nucleus, phosphoprotein, proto-oncogene,
UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB:
2rqq_A*
Length = 106
Score = 26.1 bits (57), Expect = 7.5
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 21 RLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGK 63
L P ++EK+L L +L+P D +K+ + ++
Sbjct: 50 ALSPGEMEKHLVLLAELLPDWLSLHRIRTDTYVKLDKAVDLAG 92
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 8.8
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 22/86 (25%)
Query: 146 YREMYFEGGVSSVYLW----------DLDHGFAGVILIKKAGDGSRKIQGCWDSIHVV-- 193
Y+ +Y + G L D++ LI+ D + WD ++
Sbjct: 519 YQSIYAKYGAKGSTLIVVPFNQGSKQDVEA------LIEFIYDTEKNGGLGWDLDAIIPF 572
Query: 194 ----EVQEKPTGRNAHYKLTSTVMLW 215
E + ++ + +ML
Sbjct: 573 AAIPEQGIELEHIDSKSEFAHRIMLT 598
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,890,334
Number of extensions: 297621
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 34
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)