RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4617
         (314 letters)



>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 270

 Score =  451 bits (1163), Expect = e-163
 Identities = 218/302 (72%), Positives = 244/302 (80%), Gaps = 33/302 (10%)

Query: 8   TELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKEMGKDYLL 67
           ++ Q+DCALDLMRRLPPQQIEKNLSDLIDLVP LCEDLLSSVDQPLKIARDK +GKDYLL
Sbjct: 1   SDQQLDCALDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLL 60

Query: 68  CDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMYFEGGVSSVYL 127
           CDYNRDGDSYRSPWSN YDPPLEDG+MPS RLRKLE++AN+AFDQYR++YFEGGVSSVYL
Sbjct: 61  CDYNRDGDSYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYL 120

Query: 128 WDLDHGFAEIDANHAFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSRKIQGCW 187
           WDLDHGFA                                 GVILIKKAGDGS+KI+GCW
Sbjct: 121 WDLDHGFA---------------------------------GVILIKKAGDGSKKIKGCW 147

Query: 188 DSIHVVEVQEKPTGRNAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVSDTSP 247
           DSIHVVEVQEK +GR AHYKLTSTVMLWLQTNK  SG MNLGGSLTRQ+E D  VSD+SP
Sbjct: 148 DSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEKDETVSDSSP 207

Query: 248 HIANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQQAQQALKQDLAAALQK 307
           HIANIGR+VE+MENKIR+TLNEIYFGKTKDIVNGLRS+  +   Q  + L+++L+  L +
Sbjct: 208 HIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSIDAIPDNQKYKQLQRELSQVLTQ 267

Query: 308 RN 309
           R 
Sbjct: 268 RQ 269


>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 275

 Score = 30.5 bits (69), Expect = 0.21
 Identities = 29/162 (17%), Positives = 51/162 (31%), Gaps = 33/162 (20%)

Query: 142 AFDQYREMYFEGGVSSVYLWDLDHGFAGVILIKKAGDGSRKIQ------GCWDSIHVVEV 195
           A   Y + ++  G  +VY   +D     +  I+     S + Q      G W S     +
Sbjct: 121 ALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIE-----SHQFQPKNFWNGRWRSEWKFTI 175

Query: 196 QEKP---TGR---NAHYKLTSTVMLWLQTNKIASGKMNLGGSLTRQIEMDAQVSDTSPHI 249
                          HY     V   L ++K               I+   QVS      
Sbjct: 176 TPPTAQVAAVLKIQVHYYEDGNV--QLVSHK--------------DIQDSVQVSSDVQTA 219

Query: 250 ANIGRMVEEMENKIRNTLNEIYFGKTKDIVNGLRSLQPLSVQ 291
               +++E  EN+ +  ++E Y   +      LR   P++  
Sbjct: 220 KEFIKIIENAENEYQTAISENYQTMSDTTFKALRRQLPVTRT 261


>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 84

 Score = 26.7 bits (59), Expect = 1.2
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 3  KCINYTELQMDCALDLMRRLPPQQIEKNLSDLID 36
          K + +  L  +    L   + P  ++K +  LID
Sbjct: 33 KTLGHNLLVSELYNQLKFPVKPGDLKKRIESLID 66


>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 355

 Score = 26.4 bits (57), Expect = 4.9
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 1   MYKCINYTELQMDCALDLMRRLPPQQIEKNLSDLIDLVPGLCEDLLSSVDQPLKIARDKE 60
                NY E +   A     +L P  +    S+   L      DLLS +   L I   K 
Sbjct: 246 QPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKM---LVIDPAKR 302

Query: 61  MGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMYFE 119
           +  D  L          + P+ NV+  P E  + P +   K   +  H  ++++E+ ++
Sbjct: 303 ISVDDAL----------QHPYINVWYDPAEVEAPPPQIYDKQLDEREHTIEEWKELIYK 351


>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein
           BLES03 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 234

 Score = 26.0 bits (57), Expect = 6.5
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 54  KIARDKEMGKDYLLCDYNRD 73
           K++   + G   ++C Y  D
Sbjct: 143 KVSPRAKEGGRQVICVYTDD 162


>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 103

 Score = 24.9 bits (54), Expect = 7.7
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 54  KIARDKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANH 108
           K   +KE  KDY +        +  S      +  L+D   P +  R+   D   
Sbjct: 39  KYGLEKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREWPSDKGI 93


>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
           [TaxId: 562]}
          Length = 188

 Score = 25.5 bits (56), Expect = 7.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 58  DKEMGKDYLLCDYNRDGDSYRSPWSNVYDPPLEDGSMPSERLRKLEIDANHAFDQYREMY 117
           D  + ++  L D+  DG      W +VY P L+ G +     +K + D    F + ++ Y
Sbjct: 19  DANV-QNRTLSDW--DGV-----WQSVY-PLLQSGKLDPVFQKKADADKTKTFAEIKDYY 69

Query: 118 FEG 120
            +G
Sbjct: 70  HKG 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,190,506
Number of extensions: 57143
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 10
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)