Query psy4618
Match_columns 96
No_of_seqs 102 out of 119
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 21:28:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01115 F_actin_cap_B: F-acti 100.0 1.4E-37 3E-42 242.5 1.1 74 11-91 11-89 (242)
2 KOG3174|consensus 100.0 1.7E-33 3.7E-38 223.4 3.2 76 11-93 15-90 (275)
3 PF15232 DUF4585: Domain of un 54.7 8.1 0.00018 26.5 1.4 26 49-81 7-32 (75)
4 PF02757 YLP: YLP motif; Inte 47.5 11 0.00025 16.8 0.9 9 79-87 1-9 (9)
5 PF08727 P3A: Poliovirus 3A pr 44.0 1.7 3.6E-05 28.4 -3.0 24 36-59 17-40 (57)
6 PF09822 ABC_transp_aux: ABC-t 35.4 31 0.00067 25.8 2.1 29 23-57 6-34 (271)
7 PF09671 Spore_GerQ: Spore coa 32.5 27 0.00058 24.3 1.3 28 43-70 43-70 (81)
8 PF05556 Calsarcin: Calcineuri 32.2 16 0.00034 29.8 0.1 17 71-87 156-174 (274)
9 PRK11346 hypothetical protein; 30.4 31 0.00067 28.6 1.5 29 62-92 144-172 (285)
10 PRK10318 hypothetical protein; 26.1 24 0.00052 25.9 0.1 13 64-76 40-52 (121)
11 PF05554 Novirhabdo_Nv: Viral 24.6 28 0.0006 25.6 0.2 18 51-71 24-41 (122)
12 PF06702 DUF1193: Protein of u 22.1 43 0.00093 26.6 0.9 13 72-84 49-61 (221)
13 PF11411 DNA_ligase_IV: DNA li 20.8 20 0.00042 21.5 -1.0 17 60-76 3-19 (36)
14 PF14685 Tricorn_PDZ: Tricorn 20.7 19 0.0004 24.4 -1.2 26 62-87 2-34 (88)
15 TIGR02192 HtrL_YibB conserved 20.2 61 0.0013 26.5 1.4 29 62-92 139-167 (270)
16 COG1153 FwdD Formylmethanofura 20.1 61 0.0013 24.2 1.3 61 25-92 31-96 (128)
No 1
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=100.00 E-value=1.4e-37 Score=242.49 Aligned_cols=74 Identities=45% Similarity=0.716 Sum_probs=58.7
Q ss_pred CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCC---
Q psy4618 11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFK--- 87 (96)
Q Consensus 11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~--- 87 (96)
.+.|+.++.||+ +||.|. |+|++||||+|||||||++|+++||+||+||||||||||||||||+||||++
T Consensus 11 RlpP~~ie~nl~--~l~~L~-----Pdl~edLLssVD~PLkv~~d~~~~k~yL~CdYNRDgDSYRSPwSNkY~P~~~~~~ 83 (242)
T PF01115_consen 11 RLPPKKIEKNLS--NLIDLV-----PDLTEDLLSSVDQPLKVARDKETGKDYLLCDYNRDGDSYRSPWSNKYYPPLEGDD 83 (242)
T ss_dssp TS-GGGHHHHHH--HHHHHS-----GGGHHHHHHHS----EEEEETTTTEEEEESGGGEETTEEE-TTT--EES--S---
T ss_pred hCChHHHHHHHH--HHHHHH-----HHHHHHHHHhCCCcceEEEchhhCCeeEeecccCCcccccCCCCcccCCCccccc
Confidence 578999999999 888887 7999999999999999999999999999999999999999999999999999
Q ss_pred --CCCC
Q psy4618 88 --SGRG 91 (96)
Q Consensus 88 --dG~~ 91 (96)
+|..
T Consensus 84 ~~dg~~ 89 (242)
T PF01115_consen 84 LEDGPV 89 (242)
T ss_dssp --S---
T ss_pred cCCCCC
Confidence 7764
No 2
>KOG3174|consensus
Probab=99.97 E-value=1.7e-33 Score=223.38 Aligned_cols=76 Identities=43% Similarity=0.673 Sum_probs=70.7
Q ss_pred CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618 11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR 90 (96)
Q Consensus 11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~ 90 (96)
.++|..|+.||+ +++. |+|+|++|||++|||||||++|+|+||+||+||||||||||||||||+|+||++||+
T Consensus 15 rLpPqqieKnL~--nLId-----L~P~L~edLLsSVdqplKia~dke~g~~yllcDynrdgDsyRsPwsnsy~pPledg~ 87 (275)
T KOG3174|consen 15 RLPPQQIEKNLS--NLID-----LAPHLCEDLLSSVDQPLKIARDKESGKQYLLCDYNRDGDSYRSPWSNSYDPPLEDGV 87 (275)
T ss_pred cCCHHHHHHHHH--HHHH-----hchHHHHHHHhhcccceeehhhhhcCCeeeeeecCCCcccccCCCCcccCCccccCC
Confidence 589999999999 6555 458999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy4618 91 GSN 93 (96)
Q Consensus 91 ~~~ 93 (96)
...
T Consensus 88 ~Ps 90 (275)
T KOG3174|consen 88 YPS 90 (275)
T ss_pred CcH
Confidence 753
No 3
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=54.68 E-value=8.1 Score=26.46 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=18.8
Q ss_pred ceeEeeccccCceeeecccCCCCCccCCCCCCC
Q psy4618 49 PLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKA 81 (96)
Q Consensus 49 PLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~ 81 (96)
+=||..|+++|++|+ -|.=|.|-+..
T Consensus 7 qrKvL~DP~SG~Yy~-------vd~P~Qp~~k~ 32 (75)
T PF15232_consen 7 QRKVLQDPESGQYYV-------VDAPVQPKTKT 32 (75)
T ss_pred CccEeecCCCCCEEE-------EecCCCcceee
Confidence 448999999999998 35555555444
No 4
>PF02757 YLP: YLP motif; InterPro: IPR004019 The YLP motif is found in one or several copies in various Drosophila proteins. Its function is unknown, however the presence of completely conserved tyrosine residues and its presence in the human Erbb-2 and ErbB-4 receptor protein-tyrosine kinases (2.7.10.1 from EC) may suggest it could be a substrate for tyrosine kinases. ErbBs (1-4) are single-pass transmembrane proteins that activate a wide variety of signalling pathways, including those involved in proliferation, migration, differentiation, survival, and apoptosis; they are frequently misregulated in cancer []. ErbB-2 is an essential component of a neuregulin-receptor complex, although neuregulins do not interact with it alone. ErbB-4 specifically binds and is activated by neuregulins, NRG-2, NRG-3, heparin-binding EGF-like growth factor, betacellulin and NTAK [].
Probab=47.51 E-value=11 Score=16.78 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=6.8
Q ss_pred CCCccCCCC
Q psy4618 79 AKAIDTYFK 87 (96)
Q Consensus 79 SN~Y~P~l~ 87 (96)
||+|.||.+
T Consensus 1 s~eYLpP~~ 9 (9)
T PF02757_consen 1 SNEYLPPVE 9 (9)
T ss_pred CccccCCCC
Confidence 578888863
No 5
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=44.01 E-value=1.7 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=18.2
Q ss_pred CchhhhhhcCCCcceeEeeccccC
Q psy4618 36 SSQKSDSITPSDQPLKIARDKEMG 59 (96)
Q Consensus 36 PdltedLLssVDqPLkI~~D~e~~ 59 (96)
|+...|||++||.|=-+.+|++.|
T Consensus 17 P~~I~DLL~SV~~~eV~~YC~~~G 40 (57)
T PF08727_consen 17 PPAIADLLRSVDSPEVREYCEEQG 40 (57)
T ss_dssp S-TTHHHHHHH--HHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHCC
Confidence 899999999999998888887754
No 6
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=35.41 E-value=31 Score=25.80 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCcccccccCCCCCchhhhhhcCCCcceeEeeccc
Q psy4618 23 SGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKE 57 (96)
Q Consensus 23 ~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e 57 (96)
.+.+++|. +.|.++|++++.|++|..--.
T Consensus 6 ~~k~ysLS------~~T~~~L~~L~~pV~i~~~~s 34 (271)
T PF09822_consen 6 ANKRYSLS------DQTKKVLKSLDEPVTITVYFS 34 (271)
T ss_pred CCCCccCC------HHHHHHHHhCCCCEEEEEEEC
Confidence 45677777 689999999999999987443
No 7
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=32.47 E-value=27 Score=24.33 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=20.6
Q ss_pred hcCCCcceeEeeccccCceeeecccCCC
Q psy4618 43 ITPSDQPLKIARDKEMGKDYLLCDYNRD 70 (96)
Q Consensus 43 LssVDqPLkI~~D~e~~K~yL~CDYNRD 70 (96)
+..+-.---|..|++|||.||+-.-|=|
T Consensus 43 iE~aGRDhiiisDp~tg~ryLllmvylD 70 (81)
T PF09671_consen 43 IEAAGRDHIIISDPKTGKRYLLLMVYLD 70 (81)
T ss_pred ehhcCcceEEEeCCCCCcEEEEEEEeee
Confidence 3344445568899999999999776654
No 8
>PF05556 Calsarcin: Calcineurin-binding protein (Calsarcin); InterPro: IPR008438 This family consists of several mammalian calcineurin-binding proteins. Calcineurin is a Ca/calmodulin-dependent serine-threonine phosphatase and has been implicated in the transduction of signals that control the hypertrophy of cardiac muscle and slow fibre gene expression in striated muscle. A novel family of striated muscle-specific calcineurin-interacting proteins called calsarcins or myozenins has been identified that interact and co-localize with the Z-disc protein alpha-actinin thereby coupling muscle activity to calcineurin activation []. Because calcineurin responds to sustained, low amplitude calcium signals, calsarcins may serve to localize calcineurin in the vicinity of unique intracellular pool, where it can interact with specific upstream activators or downstream substrates. Therefore, calsarcins may play an important role in modulating the function and substrate specificity of calcineurin in striated muscle cells. Three isoforms of calsarcins that have been identified in human, rat and mouse. Calsarcin-1 (CALS-1, Myozenin-2, MYOZ2) Calsarcin-2 (CALS-2, Myozenin-1, FATZ) Calsarcin-3 (Myozenin-3, MYOZ3) Calsarcin-1, is expressed, throughout the development-cycle, in all striated muscle tissues. However, CALS-1 expression is localized in slow-twitch fibres. Calsarcin-2, has an approximate ~30% identity with CALS-1 is a globular protein with central glycine-rich domain flanked by a-helical regions. CALS-2 is expressed transiently in heart during early embryogenesis and later becomes restricted to skeletal muscle with weaker signals in adult prostate, placenta and pancreas. In contrast to CALS-1, the expression of Calsarcin-2 is restricted to fast-twitch skeletal fibre. Calsarcin-3, is expressed specifically in skeletal muscle and is enriched in fast-twitch muscle fibres. Like calsarcin-1 and calsarcin-2, calsarcin-3 interacts with calcineurin, and the Z-disc proteins alpha-actinin, gamma-filamin, and telethonin [].
Probab=32.24 E-value=16 Score=29.81 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=12.5
Q ss_pred CCccCCCCCC--CccCCCC
Q psy4618 71 GDSYRHRAAK--AIDTYFK 87 (96)
Q Consensus 71 GDSYRSPwSN--~Y~P~l~ 87 (96)
=-+|+|||-- .++|.|.
T Consensus 156 pKsY~SPWe~am~~d~~l~ 174 (274)
T PF05556_consen 156 PKSYISPWEEAMGGDPELA 174 (274)
T ss_pred cccccChHHHHhccCHHHh
Confidence 4799999986 5665554
No 9
>PRK11346 hypothetical protein; Provisional
Probab=30.37 E-value=31 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=23.8
Q ss_pred eeecccCCCCCccCCCCCCCccCCCCCCCCC
Q psy4618 62 YLLCDYNRDGDSYRHRAAKAIDTYFKSGRGS 92 (96)
Q Consensus 62 yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~~~ 92 (96)
+|-=-|||+|..| |-+++|+++++++.|+
T Consensus 144 WiDFGynhgg~~f--~~~~ew~f~~d~nKI~ 172 (285)
T PRK11346 144 WIDFGYCRKPNVT--RGLKIWDFPFDENKMH 172 (285)
T ss_pred eeeccccCCCccc--CCcccccccCCCCceE
Confidence 4555699999997 7789999999988764
No 10
>PRK10318 hypothetical protein; Provisional
Probab=26.11 E-value=24 Score=25.87 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=11.2
Q ss_pred ecccCCCCCccCC
Q psy4618 64 LCDYNRDGDSYRH 76 (96)
Q Consensus 64 ~CDYNRDGDSYRS 76 (96)
.|.|.|+|+.|-+
T Consensus 40 ~c~FiRNG~~h~~ 52 (121)
T PRK10318 40 DCTFVRNGDEHTC 52 (121)
T ss_pred CCEEEECCCcCCH
Confidence 6999999999854
No 11
>PF05554 Novirhabdo_Nv: Viral hemorrhagic septicemia virus non-virion protein; InterPro: IPR008720 This family consists of several viral hemorrhagic septicemia virus non-virion (Nv) proteins. The NV protein is a nonstructural protein absent from mature virions although it is present in infected cells. The function of this protein is unknown [].
Probab=24.59 E-value=28 Score=25.64 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=13.5
Q ss_pred eEeeccccCceeeecccCCCC
Q psy4618 51 KIARDKEMGKDYLLCDYNRDG 71 (96)
Q Consensus 51 kI~~D~e~~K~yL~CDYNRDG 71 (96)
++.+|+. .||.||++|-.
T Consensus 24 rl~fdps---nylncd~drsd 41 (122)
T PF05554_consen 24 RLTFDPS---NYLNCDIDRSD 41 (122)
T ss_pred hcccCcc---cccccccchhh
Confidence 3456665 79999999964
No 12
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=22.08 E-value=43 Score=26.62 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=10.5
Q ss_pred CccCCCCCCCccC
Q psy4618 72 DSYRHRAAKAIDT 84 (96)
Q Consensus 72 DSYRSPwSN~Y~P 84 (96)
.++||||.-.|--
T Consensus 49 ~~~r~Pw~RsY~~ 61 (221)
T PF06702_consen 49 KSWRSPWRRSYSK 61 (221)
T ss_pred hhCCCCCCCCcCc
Confidence 4799999988853
No 13
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.75 E-value=20 Score=21.52 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=11.2
Q ss_pred ceeeecccCCCCCccCC
Q psy4618 60 KDYLLCDYNRDGDSYRH 76 (96)
Q Consensus 60 K~yL~CDYNRDGDSYRS 76 (96)
|+-+.|+|-+=||||=-
T Consensus 3 k~~fa~eyD~yGDSY~~ 19 (36)
T PF11411_consen 3 KEHFAKEYDCYGDSYTV 19 (36)
T ss_dssp HHHHHHHB-TTS-BSSS
T ss_pred HHHHHHHhccccccccc
Confidence 34467899999999953
No 14
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=20.71 E-value=19 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=17.5
Q ss_pred eeecccCCCCCccC-------CCCCCCccCCCC
Q psy4618 62 YLLCDYNRDGDSYR-------HRAAKAIDTYFK 87 (96)
Q Consensus 62 yL~CDYNRDGDSYR-------SPwSN~Y~P~l~ 87 (96)
+|.|||..|...|| .||.-....||.
T Consensus 2 ~LGAd~~~~~~~y~I~~I~~gd~~~~~~~sPL~ 34 (88)
T PF14685_consen 2 LLGADFSYDNGGYRIARIYPGDPWNPNARSPLA 34 (88)
T ss_dssp B-SEEEEEETTEEEEEEE-BS-TTSSS-B-GGG
T ss_pred ccceEEEEcCCEEEEEEEeCCCCCCccccCCcc
Confidence 68999999998887 477777666664
No 15
>TIGR02192 HtrL_YibB conserved hypothetical protein HtrL. The protein from this rare, uncharacterized protein family is designated HtrL or YibB in E. coli, where its gene is found in a region of LPS core biosynthesis genes. Homologs are found in Shigella flexneri, Campylobacter jejuni, and Caenorhabditis elegans only. The htrL gene may represent an insertion to the LPS core biosynthesis region, rather than an LPS biosynthetic protein.
Probab=20.24 E-value=61 Score=26.54 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=22.9
Q ss_pred eeecccCCCCCccCCCCCCCccCCCCCCCCC
Q psy4618 62 YLLCDYNRDGDSYRHRAAKAIDTYFKSGRGS 92 (96)
Q Consensus 62 yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~~~ 92 (96)
+|-=-|||+|.-| |.+++|+|++.+|.|+
T Consensus 139 WiDFGy~hgg~~f--~~~~~w~f~~~~~KI~ 167 (270)
T TIGR02192 139 WLDFGYGHAENHF--PYSYKWQFALPEGKIS 167 (270)
T ss_pred EEEccccCCCCcC--CCcccccCcCCCCcEE
Confidence 3445699998885 5699999999998764
No 16
>COG1153 FwdD Formylmethanofuran dehydrogenase subunit D [Energy production and conversion]
Probab=20.07 E-value=61 Score=24.23 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=38.2
Q ss_pred cccccccCCCCCchhhhhhcCCCcceeEeeccccC---ceeeecccCCCCCcc--CCCCCCCccCCCCCCCCC
Q psy4618 25 SMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMG---KDYLLCDYNRDGDSY--RHRAAKAIDTYFKSGRGS 92 (96)
Q Consensus 25 ~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~---K~yL~CDYNRDGDSY--RSPwSN~Y~P~l~dG~~~ 92 (96)
.+|.+. |+--+.|-.+---++||.. +-| -.=-.-|++..|=-| |+||+|.-.+|=.+|-++
T Consensus 31 a~~~in-----p~D~~~Lgv~EGD~VkVks--e~GeVVV~Ak~~~~~~pG~vfiPmgpWaN~vi~P~T~sTG~ 96 (128)
T COG1153 31 AVCEIN-----PEDMKQLGVSEGDKVKVKS--EFGEVVVKAKEADGVQPGMVFIPMGPWANVVIDPDTDSTGM 96 (128)
T ss_pred eEEEEC-----HHHHHHhCCCcCCeEEEEe--cCccEEEEEeeCCCCCCCeEEecCCcccceeeCCCCCCcCC
Confidence 455555 5555666555555677664 112 011234667777777 899999998887777665
Done!