Query psy4618
Match_columns 96
No_of_seqs 102 out of 119
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 21:28:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk4_B F-actin-capping protein 100.0 1.1E-38 3.9E-43 251.7 2.7 75 11-92 15-89 (277)
2 4akr_B F-actin-capping protein 100.0 2.8E-38 9.5E-43 250.8 2.6 75 11-92 33-107 (290)
3 3aa0_B F-actin-capping protein 100.0 8.1E-38 2.8E-42 243.2 2.7 74 11-91 15-88 (244)
4 3aa0_A F-actin-capping protein 99.2 7.7E-13 2.6E-17 102.2 -2.7 66 11-83 23-96 (286)
5 1ylx_A Hypothetical protein AP 35.1 7.9 0.00027 27.0 -0.0 20 56-75 39-58 (103)
6 1ng7_A Poliovirus 3A-N, genome 34.5 2.2 7.5E-05 27.1 -2.7 25 35-59 18-42 (60)
7 1bby_A RAP30; average structur 14.5 68 0.0023 20.2 1.3 36 40-80 26-61 (69)
8 3qdr_B Colicin-A; COLA, TOLA, 13.7 35 0.0012 21.8 -0.2 13 69-81 3-15 (63)
9 1ik9_C DNA ligase IV; DNA END 12.9 1E+02 0.0035 17.0 1.6 20 60-79 4-23 (37)
10 1m5n_Q PTHRP, PTH-RP, parathyr 10.9 61 0.0021 17.8 0.2 25 36-60 3-27 (28)
No 1
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B
Probab=100.00 E-value=1.1e-38 Score=251.75 Aligned_cols=75 Identities=47% Similarity=0.726 Sum_probs=71.3
Q ss_pred CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618 11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR 90 (96)
Q Consensus 11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~ 90 (96)
.+.|+.|+.||+ +||.|. |+|++||||+|||||||++|+++||+||+||||||||||||||||+|+||++||.
T Consensus 15 RLpP~~ie~nl~--~l~~L~-----P~L~edLLssVDqPLki~~d~~~~k~yL~CDYNRDgDSYRSPwSNkY~Ppl~dg~ 87 (277)
T 3lk4_B 15 RLPPQQIEKNLS--DLIDLV-----PSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGA 87 (277)
T ss_dssp TSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred hCCHHHHHHHHH--HHHhhC-----hHhHHHHHHhCCcCceEeEccccCCeeEeecccCCCccccCCCcCCcCCCCcCCC
Confidence 478999999999 888877 7999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q psy4618 91 GS 92 (96)
Q Consensus 91 ~~ 92 (96)
.-
T Consensus 88 ~P 89 (277)
T 3lk4_B 88 MP 89 (277)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 2
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=100.00 E-value=2.8e-38 Score=250.84 Aligned_cols=75 Identities=36% Similarity=0.558 Sum_probs=71.1
Q ss_pred CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618 11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR 90 (96)
Q Consensus 11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~ 90 (96)
.+.|+.|+.||+ +||.|. |+|++||||+|||||||++|+++||+||+||||||||||||||||+|+||++||.
T Consensus 33 RLpP~~ie~nL~--~Li~L~-----Pdl~edLLssVDqPLki~~d~~~~k~yL~CDYNRDGDSYRSPwSNkY~Ppl~dg~ 105 (290)
T 4akr_B 33 RLPPSQIEDNLA--GLLDLV-----PDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADSYRSPWSNKYDPPLSGAC 105 (290)
T ss_dssp HSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHCCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred hCCHHHHHHHHH--HHHhhC-----hHhHHHHHHhCCCcceEeEccccCCeEEeecccCCCccccCCCCCCcCCCCCCCC
Confidence 378999999999 888877 7999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q psy4618 91 GS 92 (96)
Q Consensus 91 ~~ 92 (96)
.-
T Consensus 106 ~P 107 (290)
T 4akr_B 106 YP 107 (290)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 3
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=100.00 E-value=8.1e-38 Score=243.21 Aligned_cols=74 Identities=47% Similarity=0.734 Sum_probs=70.7
Q ss_pred CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618 11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR 90 (96)
Q Consensus 11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~ 90 (96)
.+.|+.++.||+ +||.|. |+|++|||++|||||||++|+++||+||+||||||||||||||||+||||++||.
T Consensus 15 RLpP~~ie~nl~--~l~~L~-----Pdl~edLLssVDqPLki~~d~~~~k~yL~CdYNRDgDSYRSPwSN~Y~P~~~dg~ 87 (244)
T 3aa0_B 15 RLPPQQIEKNLS--DLIDLV-----PSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGA 87 (244)
T ss_dssp TSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred cCCHHHHHHHHH--HHHHhC-----hHHHHHHHhccCCcceEeeccccCCeeeeecccCCCccccCCCCCCcCCCCCCCC
Confidence 578999999999 888877 7999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy4618 91 G 91 (96)
Q Consensus 91 ~ 91 (96)
.
T Consensus 88 ~ 88 (244)
T 3aa0_B 88 M 88 (244)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A
Probab=99.17 E-value=7.7e-13 Score=102.22 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=57.4
Q ss_pred CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCC-----Cc--ceeEeeccccCceeeecccCCCC-CccCCCCCCCc
Q psy4618 11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPS-----DQ--PLKIARDKEMGKDYLLCDYNRDG-DSYRHRAAKAI 82 (96)
Q Consensus 11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssV-----Dq--PLkI~~D~e~~K~yL~CDYNRDG-DSYRSPwSN~Y 82 (96)
++.|..++.+++ .|+.|++ ..+.+.++|++++ || ||+| +.++++||+|+||||| ++|+.||++++
T Consensus 23 ~aPPge~~~v~~--Dl~~L~~--dd~ll~~~l~~a~~~yn~dq~~pl~v---~~~~~~~li~~yn~~~~~~Y~dp~s~~~ 95 (286)
T 3aa0_A 23 HAPPGEFNEVFN--DVRLLLN--NDNLLREGAAHAFAQYNMDQFTPVKI---EGYDDQVLITEHGDLGNGRFLDPRNKIS 95 (286)
T ss_dssp TCCTTCHHHHHH--HHHHHHC--CHHHHHHHTHHHHHHHHHHTTCEECC---TTSSSCEECCGGGEEETTEEEETTTTEE
T ss_pred hCCcHHHHHHHH--HHHHHcC--CcHHHHHHHHHHHHHHHHhcceeEEe---cCCCCcEEEEeccccCCCceeCcccCce
Confidence 678999999999 9999984 1222888899999 99 9999 6788999999999998 89999999987
Q ss_pred c
Q psy4618 83 D 83 (96)
Q Consensus 83 ~ 83 (96)
+
T Consensus 96 f 96 (286)
T 3aa0_A 96 F 96 (286)
T ss_dssp E
T ss_pred E
Confidence 7
No 5
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=35.05 E-value=7.9 Score=26.96 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.2
Q ss_pred cccCceeeecccCCCCCccC
Q psy4618 56 KEMGKDYLLCDYNRDGDSYR 75 (96)
Q Consensus 56 ~e~~K~yL~CDYNRDGDSYR 75 (96)
-+.+++||+|..|+||.-|-
T Consensus 39 Gegn~YY~GYTVkKdd~~~~ 58 (103)
T 1ylx_A 39 GEGNRYYVGYTINKDDEMIT 58 (103)
T ss_dssp CSTTEEEEEEEEEETTEEEE
T ss_pred CCCceEEEEEEEccCCeEEE
Confidence 45789999999999998873
No 6
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=34.52 E-value=2.2 Score=27.07 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=21.5
Q ss_pred CCchhhhhhcCCCcceeEeeccccC
Q psy4618 35 DSSQKSDSITPSDQPLKIARDKEMG 59 (96)
Q Consensus 35 ~PdltedLLssVDqPLkI~~D~e~~ 59 (96)
-|+..-|||++||.|--+.+|++.|
T Consensus 18 pP~aI~DLLksvds~eV~~YC~~kG 42 (60)
T 1ng7_A 18 PPECINDLLQAVDSQEVRDYCEKKG 42 (60)
T ss_dssp SSTTTHHHHHHHCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHCC
Confidence 3899999999999988788888755
No 7
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=14.54 E-value=68 Score=20.21 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=21.5
Q ss_pred hhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCC
Q psy4618 40 SDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAK 80 (96)
Q Consensus 40 edLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN 80 (96)
.+|-...+||....+..=.. .|+|||-|. |+.=|.=
T Consensus 26 K~L~~~t~QP~~yLKeiL~~----Ia~~~k~g~-~~~~weL 61 (69)
T 1bby_A 26 KDLVDITKQPVVYLKEILKE----IGVQNVKGI-HKNTWEL 61 (69)
T ss_dssp HHHHHHCCSCHHHHHHHHHH----HCCCBCCTT-CCCBBCC
T ss_pred HHHHHHHcCcHHHHHHHHHH----HHHHHcCCC-CCCeeeC
Confidence 35556667775433322111 399999997 6777754
No 8
>3qdr_B Colicin-A; COLA, TOLA, complex, translocation, COLA binds to TOLA, METH protein transport-toxin complex; HET: MLY; 2.65A {Citrobacter freundii}
Probab=13.67 E-value=35 Score=21.79 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=7.5
Q ss_pred CCCCccCCCCCCC
Q psy4618 69 RDGDSYRHRAAKA 81 (96)
Q Consensus 69 RDGDSYRSPwSN~ 81 (96)
+-||||--||-..
T Consensus 3 KpGdSy~TPWG~V 15 (63)
T 3qdr_B 3 KPGDSYNTPWGKV 15 (63)
T ss_dssp ----CEEETTEEE
T ss_pred CCcccccCCCceE
Confidence 4599999999643
No 9
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=12.88 E-value=1e+02 Score=17.05 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=13.4
Q ss_pred ceeeecccCCCCCccCCCCC
Q psy4618 60 KDYLLCDYNRDGDSYRHRAA 79 (96)
Q Consensus 60 K~yL~CDYNRDGDSYRSPwS 79 (96)
|+=+.+.|-+=||||.-|-+
T Consensus 4 ~~~~~~n~D~yGDSY~rd~t 23 (37)
T 1ik9_C 4 KEHFAREYDCYGDSYFIDTD 23 (37)
T ss_dssp ----CCSBCTTSCBSSSCCC
T ss_pred HHHHHHhcccccccccCcCC
Confidence 45567888999999987754
No 10
>1m5n_Q PTHRP, PTH-RP, parathyroid hormone-related protein; all helical protein, heat repeats, protein transport; 2.90A {Homo sapiens}
Probab=10.95 E-value=61 Score=17.85 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=17.5
Q ss_pred CchhhhhhcCCCcceeEeeccccCc
Q psy4618 36 SSQKSDSITPSDQPLKIARDKEMGK 60 (96)
Q Consensus 36 PdltedLLssVDqPLkI~~D~e~~K 60 (96)
+.-+..-++--+||||+..-++.+|
T Consensus 3 tQETnKs~tYkeqplk~~~KkKk~k 27 (28)
T 1m5n_Q 3 TQETNKVETYKEQPLKTPGKKKKGK 27 (28)
T ss_dssp CSCCCCCCCSSSGGGCSSCCCCCCC
T ss_pred cchhhhhhhcccCCcccccccccCC
Confidence 3445556778899999887666554
Done!