Query psy4618
Match_columns 96
No_of_seqs 102 out of 119
Neff 2.6
Searched_HMMs 13730
Date Fri Aug 16 21:28:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4618.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4618hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iznb_ e.43.1.2 (B:) Capz bet 100.0 1.5E-37 1.1E-41 242.8 2.7 75 11-92 14-88 (270)
2 d1ylxa1 d.82.5.1 (A:1-100) Hyp 63.4 0.68 5E-05 30.5 -0.0 21 55-75 35-55 (100)
3 d1gg4a1 c.59.1.1 (A:313-447) U 36.1 2.9 0.00021 26.2 -0.4 16 7-22 18-33 (135)
4 d1mg4a_ d.15.11.1 (A:) Doublec 21.2 20 0.0015 21.9 1.6 31 49-79 63-98 (101)
5 d1ng7a_ a.178.1.1 (A:) Soluble 20.6 3.2 0.00023 25.0 -2.3 22 36-57 19-40 (60)
6 d2gysa2 b.1.2.1 (A:104-217) Co 19.7 16 0.0012 20.4 0.8 12 68-79 89-100 (114)
7 d1frba_ c.1.7.1 (A:) FR-1 (fib 19.1 33 0.0024 22.6 2.5 51 13-82 265-315 (315)
8 d1b43a1 a.60.7.1 (A:220-339) F 18.6 14 0.001 23.0 0.4 9 63-71 13-21 (120)
9 d1f5na2 c.37.1.8 (A:7-283) Int 18.3 17 0.0012 25.2 0.8 30 39-68 21-53 (277)
10 d1a77a1 a.60.7.1 (A:209-316) F 16.2 17 0.0013 21.8 0.4 9 63-71 13-21 (108)
No 1
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=100.00 E-value=1.5e-37 Score=242.76 Aligned_cols=75 Identities=47% Similarity=0.726 Sum_probs=71.5
Q ss_pred CCCchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCccCCCCCCC
Q psy4618 11 NASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSGR 90 (96)
Q Consensus 11 ~~~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y~P~l~dG~ 90 (96)
.+.|+.++.||+ +||+|. |+|++|||++|||||||++|+++||+||+||||||||||||||||+||||++||.
T Consensus 14 RlpP~~ie~~l~--~l~~L~-----pdl~edLLssVD~PLki~~d~~~~k~yL~CdyNRDgDSYRSPwSNkY~P~~edg~ 86 (270)
T d1iznb_ 14 RLPPQQIEKNLS--DLIDLV-----PSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPPLEDGA 86 (270)
T ss_dssp TSCGGGHHHHHH--HHHHHC-----GGGHHHHHHHSCCCCEEEEETTTTEEEEECGGGEETTEEECTTTCCEESCCSSCC
T ss_pred cCChHHHHHHHH--HHHhhC-----HHHHHHHHHhCCCcceEeEchhhCCeeEeecccCCCccccCCCCCCcCCCccCCC
Confidence 578999999999 888887 7999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q psy4618 91 GS 92 (96)
Q Consensus 91 ~~ 92 (96)
.-
T Consensus 87 ~P 88 (270)
T d1iznb_ 87 MP 88 (270)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 2
>d1ylxa1 d.82.5.1 (A:1-100) Hypothetical protein, GK1464 ortholog {Bacillus stearothermophilus [TaxId: 1422]}
Probab=63.40 E-value=0.68 Score=30.52 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.5
Q ss_pred ccccCceeeecccCCCCCccC
Q psy4618 55 DKEMGKDYLLCDYNRDGDSYR 75 (96)
Q Consensus 55 D~e~~K~yL~CDYNRDGDSYR 75 (96)
--+.+|+|++|..|+||+-|-
T Consensus 35 ~Gqg~rYY~GyTi~KD~~~~~ 55 (100)
T d1ylxa1 35 HGEGNRYYVGYTINKDDEMIT 55 (100)
T ss_dssp ECSTTEEEEEEEEEETTEEEE
T ss_pred cCcCceEEEEEEEccCCcEEE
Confidence 344789999999999998773
No 3
>d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Probab=36.07 E-value=2.9 Score=26.17 Aligned_cols=16 Identities=38% Similarity=0.314 Sum_probs=13.4
Q ss_pred cCccCCCchhHhhhcC
Q psy4618 7 DGEANASPDSMQANRS 22 (96)
Q Consensus 7 ~~~~~~~P~~i~~nl~ 22 (96)
|-.-|+||.||+++|.
T Consensus 18 dDsYNAnP~Sm~aAl~ 33 (135)
T d1gg4a1 18 DDSYNANVGSMTAAVQ 33 (135)
T ss_dssp ECCSCCCHHHHHHHHH
T ss_pred ecCCcCCHHHHHHHHH
Confidence 3456999999999987
No 4
>d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.19 E-value=20 Score=21.85 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=19.6
Q ss_pred ceeEeeccccCceeeecccCCC-----CCccCCCCC
Q psy4618 49 PLKIARDKEMGKDYLLCDYNRD-----GDSYRHRAA 79 (96)
Q Consensus 49 PLkI~~D~e~~K~yL~CDYNRD-----GDSYRSPwS 79 (96)
+++-..|-+.|..|+||.+.+= +...+.||+
T Consensus 63 ~V~~l~dl~~g~~yVa~g~E~fk~~~Y~~~~~p~w~ 98 (101)
T d1mg4a_ 63 KISSLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWS 98 (101)
T ss_dssp BCCSGGGCCTTCEEEEESSSCCCCCCTTTTCCGGGG
T ss_pred EeCCHHHhCCCCEEEEEcCCCCcccccccccCCCCc
Confidence 5555556678889999975432 135666665
No 5
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=20.57 E-value=3.2 Score=25.03 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=17.8
Q ss_pred CchhhhhhcCCCcceeEeeccc
Q psy4618 36 SSQKSDSITPSDQPLKIARDKE 57 (96)
Q Consensus 36 PdltedLLssVDqPLkI~~D~e 57 (96)
|+...|||.|||..=-..+|++
T Consensus 19 P~aI~DLLkSVDSeEVReYCk~ 40 (60)
T d1ng7a_ 19 PECINDLLQAVDSQEVRDYCEK 40 (60)
T ss_dssp STTTHHHHHHHCCHHHHHHHHH
T ss_pred ChHHHHHHHhcCcHHHHHHHHH
Confidence 8999999999998765556655
No 6
>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.67 E-value=16 Score=20.35 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=8.9
Q ss_pred CCCCCccCCCCC
Q psy4618 68 NRDGDSYRHRAA 79 (96)
Q Consensus 68 NRDGDSYRSPwS 79 (96)
|..|..|++.||
T Consensus 89 ~~~g~~~~g~wS 100 (114)
T d2gysa2 89 LAPGSRLSGRPS 100 (114)
T ss_dssp ECTTSSCCBCCC
T ss_pred eCCCCCCCCCcc
Confidence 777888885554
No 7
>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.06 E-value=33 Score=22.64 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=28.5
Q ss_pred CchhHhhhcCCCcccccccCCCCCchhhhhhcCCCcceeEeeccccCceeeecccCCCCCccCCCCCCCc
Q psy4618 13 SPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAAKAI 82 (96)
Q Consensus 13 ~P~~i~~nl~~~~ic~l~~~~l~PdltedLLssVDqPLkI~~D~e~~K~yL~CDYNRDGDSYRSPwSN~Y 82 (96)
+|..|++|+....+ .|-++-.++ |.+++++.++..++. ++++ .|-||+-.|
T Consensus 265 ~~~ql~en~~a~~~------~Lt~ee~~~-l~~l~~~~R~~~~~~----------~~~~--~~~~~~~~~ 315 (315)
T d1frba_ 265 TPSRIQENIQVFDF------QLSDEEMAT-ILSFNRNWRACLLPE----------TVNM--EEYPYDAEY 315 (315)
T ss_dssp CHHHHHHHHCCSSC------CCCHHHHHH-HHTTCCCCCSCCCGG----------GTTS--TTCCTTCC-
T ss_pred CHHHHHHHHhhCCC------CCCHHHHHH-HhccCCCCCcCCChh----------hcCC--CCCCCCCCC
Confidence 67888888873321 122344444 345666666665553 4444 666777665
No 8
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=18.56 E-value=14 Score=23.02 Aligned_cols=9 Identities=44% Similarity=0.704 Sum_probs=6.5
Q ss_pred eecccCCCC
Q psy4618 63 LLCDYNRDG 71 (96)
Q Consensus 63 L~CDYNRDG 71 (96)
++||||-+|
T Consensus 13 ~G~DY~~~g 21 (120)
T d1b43a1 13 VGTDYNPGG 21 (120)
T ss_dssp HCCTTSTTC
T ss_pred hCCCCCccc
Confidence 579998644
No 9
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.34 E-value=17 Score=25.23 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=22.9
Q ss_pred hhhhhcCCCcceeEee---ccccCceeeecccC
Q psy4618 39 KSDSITPSDQPLKIAR---DKEMGKDYLLCDYN 68 (96)
Q Consensus 39 tedLLssVDqPLkI~~---D~e~~K~yL~CDYN 68 (96)
+-++|+.+++|+.|.- ...+||.||+.-.-
T Consensus 21 ~l~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~ 53 (277)
T d1f5na2 21 ALKILSAITQPMVVVAIVGLYRTGKSYLMNKLA 53 (277)
T ss_dssp HHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHT
T ss_pred HHHHHHcCCCCEEEEEEECCCCCCHHHHHHHHc
Confidence 4568999999987654 56699999986543
No 10
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=16.24 E-value=17 Score=21.80 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=6.6
Q ss_pred eecccCCCC
Q psy4618 63 LLCDYNRDG 71 (96)
Q Consensus 63 L~CDYNRDG 71 (96)
++||||-.|
T Consensus 13 ~G~dyn~pG 21 (108)
T d1a77a1 13 MGTDYNPGG 21 (108)
T ss_dssp HCCTTSTTC
T ss_pred hCCcCCCCC
Confidence 468888765
Done!