RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4618
(96 letters)
>gnl|CDD|144634 pfam01115, F_actin_cap_B, F-actin capping protein, beta subunit.
Length = 240
Score = 64.9 bits (159), Expect = 3e-14
Identities = 24/29 (82%), Positives = 25/29 (86%)
Query: 47 DQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
DQPLKI +D E GKDYL CDYNRDGDSYR
Sbjct: 40 DQPLKIKKDSETGKDYLCCDYNRDGDSYR 68
>gnl|CDD|151496 pfam11050, Viral_env_E26, Virus envelope protein E26. E26 is a
multifunctional protein. One form of E26 associates
with viral DNA or DNA binding proteins, while a second
form associates with intracellular membranes.
Length = 72
Score = 27.0 bits (60), Expect = 0.60
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 58 MGKDYLLCDYNRDGDSYRHRAAKAIDTYFKSG 89
MG + + C D R R A+A+ SG
Sbjct: 1 MGGEQVFCARRADCARDRQRIAEALAASLGSG 32
>gnl|CDD|179169 PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.
Length = 276
Score = 25.9 bits (58), Expect = 3.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 42 SITPSDQPLKIARDKEMGKDYLL 64
P +PLK+ K++G Y L
Sbjct: 49 GAMPVTKPLKLEAGKQLGVSYFL 71
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 25.8 bits (56), Expect = 4.7
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 6 SDGEANASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKE 57
SDG++ AS S S S H S SD+S+ S + S + A ++
Sbjct: 147 SDGKSKASAKS---GSKSASKHGESNSSDESATDSGKASASVAGIVGADEEA 195
>gnl|CDD|225705 COG3164, COG3164, Predicted membrane protein [Function unknown].
Length = 1271
Score = 25.9 bits (57), Expect = 4.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 4 MESDGEANASPDSMQANRSSGSMHT 28
+++D + SP S Q SG + T
Sbjct: 1088 IDADLQWRGSPWSPQLATLSGILDT 1112
>gnl|CDD|200430 TIGR04179, rhombo_lipo, rhombotail lipoprotein. Members of this
protein family are probable lipoproteins. Nearly every
member ends with a C-terminal region consisting of a
glycine-rich probable cleavage site, a hydrophobic
probable transmembrane helix, and a cluster of basic
residues, as described in putative protein sorting
region model TIGR03501. Furthermore, members tend to be
encoded next to a rhomboid family protease, called
rhombosortase (TIGR03902) predicted to perform a
C-terminal cleavage.
Length = 259
Score = 25.5 bits (56), Expect = 4.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 13 SPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIA 53
S + +++RSS + L P +D + SI PL++
Sbjct: 5 SQNQTRSSRSSSLVEYLYPVADQREAEQPSIPVLTLPLRVG 45
>gnl|CDD|218518 pfam05238, CENP-N, Kinetochore protein CHL4 like. CHL4 is a
protein involved in chromosome segregation. It is a
component of the central kinetochore which mediates the
attachment of the centromere to the mitotic spindle.
CENP-N is one of the components that assembles onto the
CENP-A-nucleosome-associated (NAC) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC.
Length = 390
Score = 25.4 bits (56), Expect = 5.8
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 20 NRSSGSMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYRHRAA 79
+RS SM + S Y+D S ++S P P+ + D + D R R A
Sbjct: 237 SRSQASMGSWSSYADASVEQSPLDPPKKHPVLPGERDNDSRIA---DEDDDEKRRRKRIA 293
Query: 80 KA 81
+
Sbjct: 294 QE 295
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 25.2 bits (55), Expect = 7.6
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 12 ASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQP 49
AS D + S + + SP S + K S TP P
Sbjct: 217 ASADLDDSAALSLFVLSSSPPSSSGASKEASATPPPSP 254
>gnl|CDD|217958 pfam04197, Birna_RdRp, Birnavirus RNA dependent RNA polymerase
(VP1). Birnaviruses are dsRNA viruses. This family
corresponds to the RNA dependent RNA polymerase. This
protein is also known as VP1. All of the birnavirus VP1
proteins contain conserved RdRp motifs that reside in
the catalytic "palm" domain of all classes of
polymerases. However, the birnavirus RdRps lack the
highly conserved Gly-Asp-Asp (GDD) sequence, a component
of the proposed catalytic site of this enzyme family
that exists in the conserved motif VI of the palm domain
of other RdRps.
Length = 855
Score = 25.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 2 SIMESDGEANASPDSMQA 19
SI GEAN +PD QA
Sbjct: 408 SIDLEKGEANCTPDHAQA 425
>gnl|CDD|185694 cd08024, GH16_CCF, Coelomic cytolytic factor, member of glycosyl
hydrolase family 16. Subgroup of glucanases of unknown
function that are related to beta-GRP (beta-1,3-glucan
recognition protein), but contain active site residues.
Beta-GRPs are one group of pattern recognition receptors
(PRRs), also referred to as biosensor proteins, that
complexes with pathogen-associated beta-1,3-glucans and
then transduces signals necessary for activation of an
appropriate innate immune response. Beta-GRPs are
present in insects and lack all catalytic residues. This
subgroup contains related proteins that still contain
the active site and are widely distributed in
eukaryotes. Their structures adopt a jelly roll fold
with a deep active site channel harboring the catalytic
residues, like those of other glycosyl hydrolase family
16 members.
Length = 330
Score = 24.9 bits (55), Expect = 8.3
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 3 IMESDGEANASPDSMQA--NRSSGSMH 27
IMES G N ++H
Sbjct: 153 IMESRGNRPLYDGGEAIGINSVGSTLH 179
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 25.0 bits (55), Expect = 9.4
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MSIMESDGEANASPDSMQANRSSGSMHTLSPYSDDSSQKSDSITPSDQPLK 51
+S ES+ EA A + ++ ++ L YS++S S++P LK
Sbjct: 1062 ISERESNSEAIAKALD-LSFFTNAALRNLCFYSEESPTSYTSVSPDTGRLK 1111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.122 0.338
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,486,394
Number of extensions: 336420
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 14
Length of query: 96
Length of database: 10,937,602
Length adjustment: 63
Effective length of query: 33
Effective length of database: 8,143,300
Effective search space: 268728900
Effective search space used: 268728900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.4 bits)