RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4618
         (96 letters)



>4akr_B F-actin-capping protein subunit beta; actin-binding protein;
          2.20A {Dictyostelium discoideum}
          Length = 290

 Score = 58.5 bits (141), Expect = 6e-12
 Identities = 23/35 (65%), Positives = 26/35 (74%)

Query: 41 DSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
          D ++  DQPLK+A D    KDYLLCDYNRD DSYR
Sbjct: 56 DLLSSIDQPLKVAYDAVSKKDYLLCDYNRDADSYR 90


>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping
          protein, barbed END regulation, carmil family
          conformational change; 1.70A {Gallus gallus} PDB:
          3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
          Length = 244

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 40 SDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 37 EDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72


>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ,
          CD2AP, actin filaments, uncapping, actin-filament
          regulators, protein-protein comple, actin capping,
          actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B
          3aaa_B 3aae_B 3lk3_B 1izn_B
          Length = 277

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 40 SDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 37 EDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 72


>2dew_X Protein-arginine deiminase type IV; histone modification enzyme,
           hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6
           d.126.1.5 PDB: 2dex_X 2dey_X 3b1u_A* 3b1t_A* 2dw5_A*
           3apn_A 3apm_A 1wda_A* 1wd9_A* 1wd8_A 4dkt_A*
          Length = 671

 Score = 29.3 bits (65), Expect = 0.15
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 25  SMHTLSPYSDDSSQKSDSITPSDQPLKIARDKEMGKDYLLCDYNRDG--DSYRHRAAKAI 82
           +M   S  + D   +     P   P+K        +  L  D  R G     R    +  
Sbjct: 87  TMKAASGSTGDQKVQISYYGPKTPPVKALLYLTAVEISLCADITRTGKVKPTRAVKDQRT 146

Query: 83  DTYFKSGRG 91
            T+   G+G
Sbjct: 147 WTWGPCGQG 155


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.28
 Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 10/25 (40%)

Query: 28 TLSPYSDDSSQKSDSITPSDQPLKI 52
          +L  Y+DDS+       P+   L I
Sbjct: 28 SLKLYADDSA-------PA---LAI 42


>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
           methyltransferase; TIM barrel, methyltetrahydrofolate,
           zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
           1xdj_A 1xr2_A* 1xpg_A*
          Length = 766

 Score = 27.5 bits (61), Expect = 0.73
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 75  RHRAAKAIDTYFKSGRGSNANE 96
           R    + + TYF   RG  A E
Sbjct: 112 RFGEYRGLSTYFDMARGGKALE 133


>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
           sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
           c.72.2.1
          Length = 452

 Score = 26.0 bits (58), Expect = 2.0
 Identities = 5/9 (55%), Positives = 6/9 (66%)

Query: 11  NASPDSMQA 19
           NA+  SM A
Sbjct: 334 NANVGSMTA 342


>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
           alanine ligase, MURF protein; HET: 1LG; 2.50A
           {Streptococcus pneumoniae} PDB: 2am2_A*
          Length = 454

 Score = 25.2 bits (56), Expect = 3.4
 Identities = 4/9 (44%), Positives = 7/9 (77%)

Query: 11  NASPDSMQA 19
           NA+P +M+ 
Sbjct: 326 NANPTAMKL 334


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.306    0.122    0.338 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,324,664
Number of extensions: 60602
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 12
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.8 bits)