RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4618
         (96 letters)



>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus
          gallus) [TaxId: 9031]}
          Length = 270

 Score = 62.1 bits (151), Expect = 1e-13
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 40 SDSITPSDQPLKIARDKEMGKDYLLCDYNRDGDSYR 75
           D ++  DQPLKIARDK +GKDYLLCDYNRDGDSYR
Sbjct: 36 EDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYR 71


>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein
           BLES03 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 234

 Score = 24.8 bits (54), Expect = 1.7
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 51  KIARDKEMGKDYLLCDYNRD 70
           K++   + G   ++C Y  D
Sbjct: 143 KVSPRAKEGGRQVICVYTDD 162


>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious
           bursal disease virus [TaxId: 10995]}
          Length = 774

 Score = 24.6 bits (53), Expect = 2.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 2   SIMESDGEANASPDSMQA 19
           SI    GEAN +   MQA
Sbjct: 384 SIDLEKGEANCTRQHMQA 401


>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase
          KduI {Enterococcus faecalis [TaxId: 1351]}
          Length = 260

 Score = 24.3 bits (53), Expect = 2.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 42 SITPSDQPLKIARDKEMGKDYLL 64
           +TP+ + L+I  DKE+G DY L
Sbjct: 49 GVTPTTEELEIILDKELGVDYFL 71


>d1tbua1 d.38.1.3 (A:13-116) Peroxisomal long-chain acyl-CoA
          thioesterase 1, TES1 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 104

 Score = 24.0 bits (52), Expect = 2.8
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 69 RDGDSYRHRAAKAI 82
          R+G ++ H+   A 
Sbjct: 76 RNGRNFIHKQVSAY 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.122    0.338 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,321
Number of extensions: 11446
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 5
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.3 bits)