BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4622
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35950|LDLR_CRIGR Low-density lipoprotein receptor OS=Cricetulus griseus GN=LDLR PE=3
SV=2
Length = 862
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 12 VVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSL 60
+ + + +ILL+ G I L +R++ R ++NFDNPVY+KTTED+ +
Sbjct: 786 ITLPIALVILLVFGAILL--WRNWRLRNINSINFDNPVYQKTTEDELHI 832
>sp|P98166|VLDLR_RAT Very low-density lipoprotein receptor OS=Rattus norvegicus GN=Vldlr
PE=2 SV=1
Length = 873
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 IILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSLE--KNPYTPARIYP 72
++L+++ + +++R++ H+ ++NFDNPVY KTTE+ S++ ++ + YP
Sbjct: 806 LLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYP 861
>sp|P98156|VLDLR_MOUSE Very low-density lipoprotein receptor OS=Mus musculus GN=Vldlr PE=1
SV=1
Length = 873
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 IILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSLE--KNPYTPARIYP 72
++L+++ + +++R++ H+ ++NFDNPVY KTTE+ S++ ++ + YP
Sbjct: 806 LLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYP 861
>sp|P98155|VLDLR_HUMAN Very low-density lipoprotein receptor OS=Homo sapiens GN=VLDLR PE=1
SV=1
Length = 873
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 IILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSLE--KNPYTPARIYP 72
++L+++ + +++R++ H+ ++NFDNPVY KTTE+ S++ ++ + YP
Sbjct: 806 LLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYP 861
>sp|Q28832|LDLR_PIG Low-density lipoprotein receptor (Fragment) OS=Sus scrofa GN=LDLR
PE=1 SV=2
Length = 811
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 7/63 (11%)
Query: 11 FVVILVCTIILLLSGLICLIVYRHY-LHRINANLNFDNPVYRKTTEDQFSL--EKNPYT- 66
++V+ + +ILL G ++++++ L IN+ +NFDNPVY+KTTED+ + ++ YT
Sbjct: 745 YIVLPIALLILLFFG--TFLLWKNWRLKSINS-INFDNPVYQKTTEDEVHICRSQDGYTY 801
Query: 67 PAR 69
P+R
Sbjct: 802 PSR 804
>sp|P98165|VLDLR_CHICK Very low-density lipoprotein receptor OS=Gallus gallus GN=VLDLR
PE=1 SV=1
Length = 863
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 19 IILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSLE 61
++L+ + L ++R++ H+ ++NFDNPVY KTTE+ +++
Sbjct: 796 LLLVTAALAGYFMWRNWQHKNMKSMNFDNPVYLKTTEEDLTID 838
>sp|P35952|LDLR_RAT Low-density lipoprotein receptor OS=Rattus norvegicus GN=Ldlr PE=2
SV=1
Length = 879
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 9 VAFVVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSL--EKNPYT 66
V F+ I + ++ L ++++R++ R ++NFDNPVY+KTTED+ + ++ YT
Sbjct: 806 VGFLSIFLPIALVALLVFGAILLWRNWRLRNINSINFDNPVYQKTTEDEIHICRSQDGYT 865
Query: 67 -PAR 69
P+R
Sbjct: 866 YPSR 869
>sp|P35953|VLDLR_RABIT Very low-density lipoprotein receptor OS=Oryctolagus cuniculus
GN=VLDLR PE=2 SV=1
Length = 873
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 30 IVYRHYLHRINANLNFDNPVYRKTTEDQFSLE--KNPYTPARIYP 72
+++R++ H+ ++NFDNPVY KTTE+ S++ ++ + YP
Sbjct: 817 LMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHSASVGHTYP 861
>sp|P01130|LDLR_HUMAN Low-density lipoprotein receptor OS=Homo sapiens GN=LDLR PE=1 SV=1
Length = 860
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Query: 15 LVCTIILLLSGLICLIVYRHY----LHRINANLNFDNPVYRKTTEDQFSLEKN 63
+V I+LL+ +CL V+ + L IN+ +NFDNPVY+KTTED+ + N
Sbjct: 792 IVLPIVLLV--FLCLGVFLLWKNWRLKNINS-INFDNPVYQKTTEDEVHICHN 841
>sp|Q924X6|LRP8_MOUSE Low-density lipoprotein receptor-related protein 8 OS=Mus musculus
GN=Lrp8 PE=1 SV=2
Length = 996
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 25 GLICL---IVYRHYLHRINANLNFDNPVYRKTTEDQFSLEKNPYTPARI---YPTSISEE 78
L+C+ +++R++ + ++NFDNPVYRKTTE++ E + A+I YP +IS
Sbjct: 871 ALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTTEEEEEDELHIGRTAQIGHVYPAAISNY 930
Query: 79 VRCL 82
R L
Sbjct: 931 DRPL 934
>sp|Q99087|LDLR1_XENLA Low-density lipoprotein receptor 1 OS=Xenopus laevis GN=ldlr-a PE=2
SV=1
Length = 909
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 14 ILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTT-EDQFSL--EKNPYT-PAR 69
I++ +IL L +V++++ + ++NFDNPVY+KTT EDQ + ++ YT P+R
Sbjct: 840 IVLPIVILCLVAFGGFLVWKNWRLKNTNSINFDNPVYQKTTEEDQVHICRSQDGYTYPSR 899
>sp|P35951|LDLR_MOUSE Low-density lipoprotein receptor OS=Mus musculus GN=Ldlr PE=1 SV=2
Length = 862
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 36 LHRINANLNFDNPVYRKTTEDQFSL--EKNPYT-PAR 69
L IN+ +NFDNPVY+KTTED+ + ++ YT P+R
Sbjct: 817 LKNINS-INFDNPVYQKTTEDELHICRSQDGYTYPSR 852
>sp|P01131|LDLR_BOVIN Low-density lipoprotein receptor (Fragment) OS=Bos taurus GN=LDLR
PE=2 SV=1
Length = 264
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 4/37 (10%)
Query: 36 LHRINANLNFDNPVYRKTTEDQFSL--EKNPYT-PAR 69
L IN+ +NFDNPVY+KTTED+ + ++ YT P+R
Sbjct: 219 LKSINS-INFDNPVYQKTTEDEVHICRSQDGYTYPSR 254
>sp|Q99088|LDLR2_XENLA Low-density lipoprotein receptor 2 OS=Xenopus laevis GN=ldlr-b PE=2
SV=1
Length = 892
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 14 ILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTT-EDQFSL--EKNPYT-PAR 69
I++ +IL L ++++++ + ++NFDNPVY+KTT EDQ + ++ YT P+R
Sbjct: 823 IVLPILILCLVSFGGFLLWKNWRLKNTNSINFDNPVYQKTTEEDQVHICRSQDGYTYPSR 882
>sp|P20063|LDLR_RABIT Low-density lipoprotein receptor (Fragment) OS=Oryctolagus
cuniculus GN=LDLR PE=2 SV=1
Length = 837
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 32 YRHYLHRINANLNFDNPVYRKTTEDQFSL--EKNPYT-PAR 69
++++ R ++NFDNPVY+KTTED+ + ++ YT P+R
Sbjct: 787 WKNWRLRSVHSINFDNPVYQKTTEDEVHICRSQDGYTYPSR 827
>sp|Q14114|LRP8_HUMAN Low-density lipoprotein receptor-related protein 8 OS=Homo sapiens
GN=LRP8 PE=1 SV=4
Length = 963
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 25 GLICL---IVYRHYLHRINANLNFDNPVYRKTTEDQFSLEKNPYTPARI---YPTSISEE 78
L+C+ +++R++ + ++NFDNPVYRKTTE++ E + A+I YP +IS
Sbjct: 838 ALLCMSGYLIWRNWKRKNTKSMNFDNPVYRKTTEEEDEDELHIGRTAQIGHVYPAAISSF 897
Query: 79 VRCL 82
R L
Sbjct: 898 DRPL 901
>sp|Q98931|LRP8_CHICK Low-density lipoprotein receptor-related protein 8 OS=Gallus gallus
GN=LRP8 PE=1 SV=1
Length = 917
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
Query: 26 LICL---IVYRHYLHRINANLNFDNPVYRK 52
L+C+ +++R++ + ++NFDNPVYRK
Sbjct: 852 LLCMGGYLIWRNWKRKNTKSMNFDNPVYRK 881
>sp|P36747|VL2_HPV10 Minor capsid protein L2 OS=Human papillomavirus type 10 GN=L2 PE=3
SV=1
Length = 470
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 35 YLHRINANLNFDNPVYRKTTEDQFSLEKNPYTPARI 70
+L R ++ L FDNPV+ ED+ + + PY+P+R+
Sbjct: 242 FLSRPSSLLTFDNPVFEP--EDETIIFERPYSPSRV 275
>sp|Q0IH22|PPD1B_XENLA Blood vessel epicardial substance-B OS=Xenopus laevis GN=bves-b
PE=2 SV=1
Length = 338
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 21 LLLSGLICLIVYRHYLHRINANLNFDNPVYRKT 53
LLL G++ + H+LH I+AN D+P +R T
Sbjct: 174 LLLMGIMKVSYRGHFLHTISANAYIDSPEFRST 206
>sp|Q8JH92|PPD1A_XENLA Blood vessel epicardial substance-A OS=Xenopus laevis GN=bves-a
PE=1 SV=1
Length = 338
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 21 LLLSGLICLIVYRHYLHRINANLNFDNPVYRKT 53
+LL G++ + H+LH I+AN D+P +R T
Sbjct: 174 ILLKGIMKVSYRGHFLHTISANAYIDSPEFRST 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,742,939
Number of Sequences: 539616
Number of extensions: 1013938
Number of successful extensions: 3758
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3735
Number of HSP's gapped (non-prelim): 27
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)