Query psy4622
Match_columns 84
No_of_seqs 101 out of 135
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 21:34:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1k_A Ephrin type-A receptor 90.5 0.017 5.8E-07 32.1 -1.9 28 6-34 10-37 (38)
2 2knc_B Integrin beta-3; transm 86.8 0.075 2.6E-06 33.4 -1.1 23 11-33 11-33 (79)
3 2ks1_B Epidermal growth factor 86.0 0.074 2.5E-06 30.4 -1.2 32 4-36 8-39 (44)
4 2l2t_A Receptor tyrosine-prote 85.9 0.054 1.8E-06 31.1 -1.9 33 6-39 9-41 (44)
5 1cd1_A CD1, MCD1D.1; immunolog 82.8 0.25 8.4E-06 36.4 0.0 18 23-40 297-314 (315)
6 2k9y_A Ephrin type-A receptor 65.4 0.93 3.2E-05 24.3 -0.6 9 6-14 9-17 (41)
7 2l34_A TYRO protein tyrosine k 63.8 0.69 2.4E-05 24.8 -1.3 28 5-33 5-32 (33)
8 2jwa_A Receptor tyrosine-prote 63.0 0.4 1.4E-05 27.5 -2.5 25 9-35 14-38 (44)
9 2brq_C Integrin beta-7 subunit 49.8 4.6 0.00016 21.0 0.5 9 46-54 7-15 (31)
10 2knc_A Integrin alpha-IIB; tra 49.7 2.7 9.2E-05 24.8 -0.5 29 4-32 6-34 (54)
11 2l9u_A Receptor tyrosine-prote 47.8 0.96 3.3E-05 25.3 -2.5 26 10-36 9-34 (40)
12 2l8s_A Integrin alpha-1; trans 46.4 3 0.0001 24.7 -0.6 28 5-32 4-31 (54)
13 2jf1_T Integrin beta-2 subunit 45.9 5.8 0.0002 21.0 0.5 10 45-54 15-24 (35)
14 1o9a_B FNBB, fibronectin bindi 38.4 7.9 0.00027 21.1 0.3 11 38-48 21-31 (36)
15 3sj5_A Methyl-accepting chemot 37.6 10 0.00035 26.1 0.9 12 42-53 175-186 (188)
16 1m8o_B Platele integrin BETA3 34.8 11 0.00038 21.1 0.6 9 46-54 28-36 (47)
17 2k1a_A Integrin alpha-IIB; sin 25.7 11 0.00037 21.1 -0.5 14 19-32 19-32 (42)
18 1s7q_A H-2KB, H-2 class I hist 24.7 16 0.00053 27.3 0.0 8 26-33 302-309 (348)
19 3r4v_A Putative uncharacterize 23.7 26 0.0009 27.1 1.1 27 38-64 235-271 (315)
20 3lb6_C IL-13, interleukin-13 r 22.8 18 0.00061 26.5 0.0 30 12-43 343-372 (380)
21 3g9w_C Integrin beta-1D; prote 22.3 25 0.00086 20.2 0.6 9 46-54 30-38 (52)
22 1s4x_A Integrin beta-3; cell a 21.9 16 0.00053 22.2 -0.4 10 45-54 47-56 (67)
23 1tr8_A Conserved protein (MTH1 21.5 39 0.0014 21.7 1.5 23 37-60 24-49 (102)
24 1iij_A ERBB-2 receptor protein 20.7 5.7 0.0002 21.6 -2.3 14 20-33 19-32 (35)
25 3mcb_B Transcription factor BT 20.7 43 0.0015 19.7 1.4 15 38-52 15-29 (58)
No 1
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=90.49 E-value=0.017 Score=32.08 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=19.9
Q ss_pred CCceeehhHHHHHHHHHHHhheeeeEEEe
Q psy4622 6 SGMVAFVVILVCTIILLLSGLICLIVYRH 34 (84)
Q Consensus 6 sg~~al~vil~l~~~l~l~~~~~~l~wR~ 34 (84)
.|.+|.+++..+ +.+++++...+++||+
T Consensus 10 ~GaIAGiVvG~v-~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 10 GGEIVAVIFGLL-LGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHCC
T ss_pred CCceeeeehHHH-HHHHHHHHHHHHHeec
Confidence 356677777777 6677777777777765
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=86.75 E-value=0.075 Score=33.40 Aligned_cols=23 Identities=35% Similarity=0.648 Sum_probs=11.9
Q ss_pred ehhHHHHHHHHHHHhheeeeEEE
Q psy4622 11 FVVILVCTIILLLSGLICLIVYR 33 (84)
Q Consensus 11 l~vil~l~~~l~l~~~~~~l~wR 33 (84)
+.+++.+++.+.|++++..++||
T Consensus 11 ~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 33443333445555555666775
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=86.01 E-value=0.074 Score=30.44 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=19.1
Q ss_pred CCCCceeehhHHHHHHHHHHHhheeeeEEEeee
Q psy4622 4 RFSGMVAFVVILVCTIILLLSGLICLIVYRHYL 36 (84)
Q Consensus 4 ~~sg~~al~vil~l~~~l~l~~~~~~l~wR~~~ 36 (84)
++.+.+|.-+|.-+ +++++++++.+++||+.+
T Consensus 8 s~~~~IA~gVVgGv-~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 8 PKIPSIATGMVGAL-LLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp SCSSSSTHHHHHHH-HHHHHHHHHHHHHHHTTT
T ss_pred CCcceEEeehhHHH-HHHHHHHHHHHHHhhhhH
Confidence 44566666666655 555555666666666544
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=85.86 E-value=0.054 Score=31.14 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=17.7
Q ss_pred CCceeehhHHHHHHHHHHHhheeeeEEEeeeccc
Q psy4622 6 SGMVAFVVILVCTIILLLSGLICLIVYRHYLHRI 39 (84)
Q Consensus 6 sg~~al~vil~l~~~l~l~~~~~~l~wR~~~~rn 39 (84)
.+.+|.-+|.-+ +++++++.+.+++||+.+.++
T Consensus 9 ~~aIA~gVVgGv-~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 9 TPLIAAGVIGGL-FILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SHHHHHHHHHHH-HHHHHHHHHHHHHHHTTCSSC
T ss_pred cceEEEeehHHH-HHHHHHHHHHHHHhhhhhhhh
Confidence 344555555444 445555566666776654443
No 5
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=82.76 E-value=0.25 Score=36.39 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHhheeeeEEEeeecccc
Q psy4622 23 LSGLICLIVYRHYLHRIN 40 (84)
Q Consensus 23 l~~~~~~l~wR~~~~rn~ 40 (84)
|++++++++||+++.|++
T Consensus 297 l~~~~~~~~~~~~~~~~~ 314 (315)
T 1cd1_A 297 VGAVVYYIWRRRSAYQDI 314 (315)
T ss_dssp ------------------
T ss_pred HHHHHHhheehhcCCCCC
Confidence 334447777888876653
No 6
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=65.41 E-value=0.93 Score=24.32 Aligned_cols=9 Identities=11% Similarity=-0.234 Sum_probs=3.8
Q ss_pred CCceeehhH
Q psy4622 6 SGMVAFVVI 14 (84)
Q Consensus 6 sg~~al~vi 14 (84)
++..+++++
T Consensus 9 ~~~~~~I~~ 17 (41)
T 2k9y_A 9 GSGNLAVIG 17 (41)
T ss_dssp CCSSTHHHH
T ss_pred CCceEEEEe
Confidence 344444443
No 7
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=63.79 E-value=0.69 Score=24.82 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=19.2
Q ss_pred CCCceeehhHHHHHHHHHHHhheeeeEEE
Q psy4622 5 FSGMVAFVVILVCTIILLLSGLICLIVYR 33 (84)
Q Consensus 5 ~sg~~al~vil~l~~~l~l~~~~~~l~wR 33 (84)
+.|.+|.+++..+ +.+.+++++.|++-|
T Consensus 5 ~~gaIaGIVvgdi-~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 5 SPGVLAGIVVGDL-VLTVLIALAVYFLGR 32 (33)
T ss_dssp CTHHHHHHHHHHH-HHHHHHHHHHHHHCC
T ss_pred CcceEEeEeHHHH-HHHHHHHHHHhheec
Confidence 4567777888777 667777777666433
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=63.05 E-value=0.4 Score=27.48 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=10.7
Q ss_pred eeehhHHHHHHHHHHHhheeeeEEEee
Q psy4622 9 VAFVVILVCTIILLLSGLICLIVYRHY 35 (84)
Q Consensus 9 ~al~vil~l~~~l~l~~~~~~l~wR~~ 35 (84)
+|..++. + +++.+++++.++++|+.
T Consensus 14 Ia~~vVG-v-ll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 14 IISAVVG-I-LLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHH-H-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-H-HHHHHHHHHHHhheehh
Confidence 4444454 3 33333344444444443
No 9
>2brq_C Integrin beta-7 subunit; structural protein, cytoskeleton/complex, actin-binding, cytoskeleton, immunoglobulin like, cell adhesion; HET: GSH; 2.10A {Homo sapiens}
Probab=49.76 E-value=4.6 Score=21.03 Aligned_cols=9 Identities=33% Similarity=0.899 Sum_probs=7.8
Q ss_pred cCCcccccc
Q psy4622 46 DNPVYRKTT 54 (84)
Q Consensus 46 DNPVYrKTT 54 (84)
+||.|+.-|
T Consensus 7 ~NPLYk~at 15 (31)
T 2brq_C 7 SNPLYKSAI 15 (31)
T ss_pred CCCceeCCc
Confidence 699999877
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=49.69 E-value=2.7 Score=24.84 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=15.3
Q ss_pred CCCCceeehhHHHHHHHHHHHhheeeeEE
Q psy4622 4 RFSGMVAFVVILVCTIILLLSGLICLIVY 32 (84)
Q Consensus 4 ~~sg~~al~vil~l~~~l~l~~~~~~l~w 32 (84)
.+.+....++++.+.+.+.++++..+++|
T Consensus 6 ~~~~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 6 EERAIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444344556666777777
No 11
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=47.80 E-value=0.96 Score=25.33 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=14.9
Q ss_pred eehhHHHHHHHHHHHhheeeeEEEeee
Q psy4622 10 AFVVILVCTIILLLSGLICLIVYRHYL 36 (84)
Q Consensus 10 al~vil~l~~~l~l~~~~~~l~wR~~~ 36 (84)
|+.+|.-+ +++-+...+.|++||-.+
T Consensus 9 alt~i~gl-~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 9 ALTVIAGL-VVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHhCceeEEEcccc
Confidence 44555555 445555556678886543
No 12
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=46.44 E-value=3 Score=24.72 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=15.1
Q ss_pred CCCceeehhHHHHHHHHHHHhheeeeEE
Q psy4622 5 FSGMVAFVVILVCTIILLLSGLICLIVY 32 (84)
Q Consensus 5 ~sg~~al~vil~l~~~l~l~~~~~~l~w 32 (84)
+.+....++++.+.+.+.++++..+++|
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444345666667777888
No 13
>2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion, transmembrane, acetylation, polymorphism, cytoskeleton, glycoprotein, filamin, complex; 2.2A {Homo sapiens}
Probab=45.85 E-value=5.8 Score=20.96 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=8.2
Q ss_pred ccCCcccccc
Q psy4622 45 FDNPVYRKTT 54 (84)
Q Consensus 45 FDNPVYrKTT 54 (84)
=+||.|+.-|
T Consensus 15 ~~NPlYk~~t 24 (35)
T 2jf1_T 15 NDNPLFKSAT 24 (35)
T ss_pred cCCCCccCcc
Confidence 3799999876
No 14
>1o9a_B FNBB, fibronectin binding protein; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Streptococcus dysgalactiae}
Probab=38.38 E-value=7.9 Score=21.07 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=8.0
Q ss_pred cccceeeccCC
Q psy4622 38 RINANLNFDNP 48 (84)
Q Consensus 38 rn~~SmNFDNP 48 (84)
|.--|++|||-
T Consensus 21 kpk~sihfdne 31 (36)
T 1o9a_B 21 KPKLSIHFDNE 31 (36)
T ss_dssp CCCCBCCCCCC
T ss_pred CcceEEeccCc
Confidence 34458999994
No 15
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=37.63 E-value=10 Score=26.14 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.8
Q ss_pred eeeccCCccccc
Q psy4622 42 NLNFDNPVYRKT 53 (84)
Q Consensus 42 SmNFDNPVYrKT 53 (84)
.++||||.|+|-
T Consensus 175 rl~f~~~~~~~~ 186 (188)
T 3sj5_A 175 RIKFKNPVFEYK 186 (188)
T ss_dssp EEEESSCCSCC-
T ss_pred EEEeeChhhhhc
Confidence 689999998873
No 16
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=34.84 E-value=11 Score=21.08 Aligned_cols=9 Identities=44% Similarity=1.117 Sum_probs=7.8
Q ss_pred cCCcccccc
Q psy4622 46 DNPVYRKTT 54 (84)
Q Consensus 46 DNPVYrKTT 54 (84)
+||.|+.-|
T Consensus 28 ~NPlYk~~t 36 (47)
T 1m8o_B 28 NNPLYKEAT 36 (47)
T ss_dssp CCCCSSSSS
T ss_pred cCCCccCcc
Confidence 799999876
No 17
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=25.70 E-value=11 Score=21.05 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=8.1
Q ss_pred HHHHHHhheeeeEE
Q psy4622 19 IILLLSGLICLIVY 32 (84)
Q Consensus 19 ~~l~l~~~~~~l~w 32 (84)
+.+.++++..+++|
T Consensus 19 ~GLllL~li~~~Lw 32 (42)
T 2k1a_A 19 GGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555666666
No 18
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=24.69 E-value=16 Score=27.30 Aligned_cols=8 Identities=0% Similarity=0.347 Sum_probs=0.0
Q ss_pred heeeeEEE
Q psy4622 26 LICLIVYR 33 (84)
Q Consensus 26 ~~~~l~wR 33 (84)
++++++||
T Consensus 302 ~~~~~~~~ 309 (348)
T 1s7q_A 302 VVAFVMKM 309 (348)
T ss_dssp --------
T ss_pred EEEEEEEE
Confidence 45678887
No 19
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Probab=23.66 E-value=26 Score=27.10 Aligned_cols=27 Identities=30% Similarity=0.568 Sum_probs=19.1
Q ss_pred cccceeeccCCcccccc----------ccceeeccCC
Q psy4622 38 RINANLNFDNPVYRKTT----------EDQFSLEKNP 64 (84)
Q Consensus 38 rn~~SmNFDNPVYrKTT----------Ed~~~i~r~~ 64 (84)
.+..-.-|.||+||||= .||.|+--|+
T Consensus 235 ~~~~~v~f~~~~~r~~g~~~~~~~~~~~~~~~~~~~~ 271 (315)
T 3r4v_A 235 DPSKEVAFGTPIYRKVGIMKVDDLDVTDDQIHFVINS 271 (315)
T ss_dssp SGGGCCCCSCCSEEEEEECCTTCTTCCSSEEEEEEEC
T ss_pred CCccccccccceEEeecccCccccCcccceeEEEecc
Confidence 45556679999999985 3666765554
No 20
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=22.84 E-value=18 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhheeeeEEEeeecccccee
Q psy4622 12 VVILVCTIILLLSGLICLIVYRHYLHRINANL 43 (84)
Q Consensus 12 ~vil~l~~~l~l~~~~~~l~wR~~~~rn~~Sm 43 (84)
++++|+.+++.++.+++.++|.| +|....|
T Consensus 343 ~~~i~~~~~~~~~l~~~~~~~~k--~~~~~~~ 372 (380)
T 3lb6_C 343 RFWLPFGFILILVIFVTGLLLRK--PNTYPKM 372 (380)
T ss_dssp --------------------------------
T ss_pred EEEhHHHHHHHHHHHHHHHHHhc--chhHHHH
Confidence 34445423344444444454432 3444444
No 21
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Probab=22.27 E-value=25 Score=20.21 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=7.3
Q ss_pred cCCcccccc
Q psy4622 46 DNPVYRKTT 54 (84)
Q Consensus 46 DNPVYrKTT 54 (84)
+||.|+.-|
T Consensus 30 ~NPLYk~~t 38 (52)
T 3g9w_C 30 ENPIYKSPI 38 (52)
T ss_dssp CCTTCCCCC
T ss_pred CCCcccCCc
Confidence 699998665
No 22
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=21.89 E-value=16 Score=22.21 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=8.2
Q ss_pred ccCCcccccc
Q psy4622 45 FDNPVYRKTT 54 (84)
Q Consensus 45 FDNPVYrKTT 54 (84)
=+||.|+..|
T Consensus 47 ~~NPLYk~at 56 (67)
T 1s4x_A 47 ANNPLYKEAT 56 (67)
T ss_dssp SSSTHHHHHH
T ss_pred cCCCCccCCc
Confidence 4799999876
No 23
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=21.46 E-value=39 Score=21.66 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=14.6
Q ss_pred ccccceeeccCC-ccc-ccc-ccceee
Q psy4622 37 HRINANLNFDNP-VYR-KTT-EDQFSL 60 (84)
Q Consensus 37 ~rn~~SmNFDNP-VYr-KTT-Ed~~~i 60 (84)
... +.++|+|| ||. |-- .+.+.+
T Consensus 24 k~d-~~iv~~~P~V~~~~~~~~~Ty~I 49 (102)
T 1tr8_A 24 LKR-KEIIIKNPKVNVMEFMGQKTYQV 49 (102)
T ss_dssp CSS-EEEEEESCEEEEEEETTEEEEEE
T ss_pred eCC-EEEEECCCEEEEEcCCCCcEEEE
Confidence 344 88999999 786 333 344444
No 24
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.68 E-value=5.7 Score=21.61 Aligned_cols=14 Identities=14% Similarity=0.346 Sum_probs=6.0
Q ss_pred HHHHHhheeeeEEE
Q psy4622 20 ILLLSGLICLIVYR 33 (84)
Q Consensus 20 ~l~l~~~~~~l~wR 33 (84)
++.+++.+..++||
T Consensus 19 l~vii~l~~~~~iR 32 (35)
T 1iij_A 19 LFLILVVVVGILIK 32 (35)
T ss_dssp HHHHHTTTTTHHHH
T ss_pred HHHHHHHHhheEEe
Confidence 33334444444444
No 25
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=20.68 E-value=43 Score=19.66 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=11.0
Q ss_pred cccceeeccCCcccc
Q psy4622 38 RINANLNFDNPVYRK 52 (84)
Q Consensus 38 rn~~SmNFDNPVYrK 52 (84)
...+-+||+||--+.
T Consensus 15 ~dg~vihF~nPkVqa 29 (58)
T 3mcb_B 15 NQGTVIHFNNPKVQA 29 (58)
T ss_dssp TTSEEEEEESCEEEE
T ss_pred cCCEEEEecCcceEE
Confidence 445789999996544
Done!