Query psy4622
Match_columns 84
No_of_seqs 101 out of 135
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 21:34:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mxaa3 d.130.1.1 (A:232-383) 31.3 5.3 0.00039 26.1 0.2 15 40-54 110-124 (152)
2 d2p02a3 d.130.1.1 (A:274-417) 26.3 7.3 0.00053 25.2 0.2 24 40-63 110-139 (144)
3 d1u3ma_ d.6.1.1 (A:) Prion pro 17.3 12 0.00087 23.6 -0.2 20 26-48 7-26 (117)
4 d1xu0a_ d.6.1.1 (A:) Prion pro 16.2 14 0.001 22.9 -0.1 20 26-48 1-20 (102)
5 d1u55a_ d.278.1.1 (A:) Methyl- 15.9 22 0.0016 22.8 0.9 12 41-52 174-185 (188)
6 d1adta3 g.51.1.1 (A:386-529) S 15.0 18 0.0013 23.5 0.2 9 46-54 66-74 (144)
7 d1bvp12 b.19.1.1 (1:121-254) B 13.6 45 0.0033 21.3 1.9 11 26-36 62-72 (134)
8 d1f0ya2 c.2.1.6 (A:12-203) Sho 13.2 33 0.0024 21.5 1.2 16 37-52 140-155 (192)
9 d1u5la_ d.6.1.1 (A:) Prion pro 11.9 22 0.0016 22.1 -0.1 21 26-49 7-27 (107)
10 d1i4ma_ d.6.1.1 (A:) Prion pro 11.9 22 0.0016 22.1 -0.1 21 26-49 7-27 (108)
No 1
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=31.31 E-value=5.3 Score=26.14 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=12.8
Q ss_pred cceeeccCCcccccc
Q psy4622 40 NANLNFDNPVYRKTT 54 (84)
Q Consensus 40 ~~SmNFDNPVYrKTT 54 (84)
++.++..||.|+||.
T Consensus 110 I~~L~L~~PiY~~TA 124 (152)
T d1mxaa3 110 IQMLDLLHPIYKETA 124 (152)
T ss_dssp HHHTTCCSSCCGGGG
T ss_pred HHhcCCCCCcccccC
Confidence 456788899999999
No 2
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=26.33 E-value=7.3 Score=25.24 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=17.2
Q ss_pred cceeeccCCcccccc------ccceeeccC
Q psy4622 40 NANLNFDNPVYRKTT------EDQFSLEKN 63 (84)
Q Consensus 40 ~~SmNFDNPVYrKTT------Ed~~~i~r~ 63 (84)
++.++..+|.|++|. .++|.-||.
T Consensus 110 I~~L~L~~PiY~~TAaYGHFGR~~f~WEk~ 139 (144)
T d2p02a3 110 VRDLDLKKPIYQRTAAYGHFGRDSFPWEVP 139 (144)
T ss_dssp HHHHTTTSSCGGGGSSSCSSSSTTCGGGSC
T ss_pred HHHhCCCCCcchhccCccCCCCCCCCeecc
Confidence 456788899999998 345555543
No 3
>d1u3ma_ d.6.1.1 (A:) Prion protein domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.25 E-value=12 Score=23.65 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=12.9
Q ss_pred heeeeEEEeeeccccceeeccCC
Q psy4622 26 LICLIVYRHYLHRINANLNFDNP 48 (84)
Q Consensus 26 ~~~~l~wR~~~~rn~~SmNFDNP 48 (84)
+|||.+=+-.. --.||||||
T Consensus 7 lggYmlGsaMs---r~~~hF~n~ 26 (117)
T d1u3ma_ 7 LGGYAMGRVMS---GMNYHFDRP 26 (117)
T ss_dssp SSCCEECCCCC---CCSCCCCSH
T ss_pred cchhhhhhhhc---cCccccCCh
Confidence 46676654332 346899998
No 4
>d1xu0a_ d.6.1.1 (A:) Prion protein domain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=16.22 E-value=14 Score=22.86 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=12.9
Q ss_pred heeeeEEEeeeccccceeeccCC
Q psy4622 26 LICLIVYRHYLHRINANLNFDNP 48 (84)
Q Consensus 26 ~~~~l~wR~~~~rn~~SmNFDNP 48 (84)
+|||.+=+-.. --.||||||
T Consensus 1 lGGYmlGsaMs---r~~~hF~n~ 20 (102)
T d1xu0a_ 1 IGGYMLGNAVG---RMSYQFNNP 20 (102)
T ss_dssp CCEEEEEEECC---SCCCCCSSH
T ss_pred Ccceeehhhhc---ccccccCCh
Confidence 36666654443 346899998
No 5
>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein {Thermoanaerobacter tengcongensis [TaxId: 119072]}
Probab=15.91 E-value=22 Score=22.83 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.8
Q ss_pred ceeeccCCcccc
Q psy4622 41 ANLNFDNPVYRK 52 (84)
Q Consensus 41 ~SmNFDNPVYrK 52 (84)
-.+.|+||+|+.
T Consensus 174 ~~i~f~n~~~~~ 185 (188)
T d1u55a_ 174 VRIKFKNPVFEY 185 (188)
T ss_dssp EEEEESSCCCCC
T ss_pred EEEEEEchhhhc
Confidence 478999999864
No 6
>d1adta3 g.51.1.1 (A:386-529) Second Zn-domain of early E2A DNA-binding protein, ADDBP {Human adenovirus type 5 [TaxId: 28285]}
Probab=15.04 E-value=18 Score=23.50 Aligned_cols=9 Identities=56% Similarity=0.969 Sum_probs=2.3
Q ss_pred cCCcccccc
Q psy4622 46 DNPVYRKTT 54 (84)
Q Consensus 46 DNPVYrKTT 54 (84)
=|||||.+-
T Consensus 66 CNPv~rnsr 74 (144)
T d1adta3 66 CNPVYRNSR 74 (144)
T ss_dssp CCC------
T ss_pred CCccccCcc
Confidence 489999765
No 7
>d1bvp12 b.19.1.1 (1:121-254) BTV vp7, central (top) domain {Bluetongue virus [TaxId: 40051]}
Probab=13.56 E-value=45 Score=21.29 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=8.9
Q ss_pred heeeeEEEeee
Q psy4622 26 LICLIVYRHYL 36 (84)
Q Consensus 26 ~~~~l~wR~~~ 36 (84)
...|++||+.+
T Consensus 62 ~miyfVWR~i~ 72 (134)
T d1bvp12 62 MMIYLVWRRIE 72 (134)
T ss_dssp SEEEEEEEEEE
T ss_pred EEEEEEEeeeh
Confidence 46799999876
No 8
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.23 E-value=33 Score=21.52 Aligned_cols=16 Identities=38% Similarity=0.297 Sum_probs=13.1
Q ss_pred ccccceeeccCCcccc
Q psy4622 37 HRINANLNFDNPVYRK 52 (84)
Q Consensus 37 ~rn~~SmNFDNPVYrK 52 (84)
+.++-.|||=||+|.-
T Consensus 140 p~r~ig~HffnP~~~~ 155 (192)
T d1f0ya2 140 QDRFAGLHFFNPVPVM 155 (192)
T ss_dssp GGGEEEEEECSSTTTC
T ss_pred HhHEEeeccccccCcc
Confidence 5678899999999863
No 9
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle (Trachemys scripta) [TaxId: 34903]}
Probab=11.90 E-value=22 Score=22.10 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=12.6
Q ss_pred heeeeEEEeeeccccceeeccCCc
Q psy4622 26 LICLIVYRHYLHRINANLNFDNPV 49 (84)
Q Consensus 26 ~~~~l~wR~~~~rn~~SmNFDNPV 49 (84)
+|||.+=+-.. --.||||||-
T Consensus 7 lggymlg~ams---r~~~hFg~~~ 27 (107)
T d1u5la_ 7 LGGYALGSAMS---GMRMNFDRPE 27 (107)
T ss_dssp CTTSEECCCCS---SCCCCCSSHH
T ss_pred chhhhhhhhhc---cCcccCCChH
Confidence 45666643332 2368999983
No 10
>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.86 E-value=22 Score=22.12 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=12.1
Q ss_pred heeeeEEEeeeccccceeeccCCc
Q psy4622 26 LICLIVYRHYLHRINANLNFDNPV 49 (84)
Q Consensus 26 ~~~~l~wR~~~~rn~~SmNFDNPV 49 (84)
++||.+=|-.. --.+|||||-
T Consensus 7 ~~gY~lG~am~---rp~~~F~np~ 27 (108)
T d1i4ma_ 7 LGGYMLGSAMS---RPIIHFGSDY 27 (108)
T ss_dssp CTTCEECCCCC---CCCCCCSSHH
T ss_pred hhhhhhcccCC---CCCcCCCChH
Confidence 34566554332 2357999993
Done!