RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4622
(84 letters)
>gnl|CDD|220420 pfam09815, XK-related, XK-related protein. Members of this family
comprise various XK-related proteins, that are involved
in sodium-dependent transport of neutral amino acids or
oligopeptides. These proteins are responsible for the Kx
blood group system - defects results in McLeod syndrome,
an X-linked multi-system disorder characterized by late
onset abnormalities in the neuromuscular and
hematopoietic systems.
Length = 334
Score = 29.5 bits (67), Expect = 0.12
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 11 FVVILVCTIILLLSGLICLIVYRHYLH 37
+++ + + L GL ++VY YLH
Sbjct: 306 SLLVSIAVLAGFLLGLFFMVVYYKYLH 332
>gnl|CDD|219294 pfam07095, IgaA, Intracellular growth attenuator protein IgaA.
This family consists of several bacterial intracellular
growth attenuator (IgaA) proteins. IgaA is involved in
negative control of bacterial proliferation within
fibroblasts. IgaA is homologous to the E. coli YrfF and
P. mirabilis UmoB proteins. Whereas the biological
function of YrfF is currently unknown, UmoB has been
shown elsewhere to act as a positive regulator of
FlhDC, the master regulator of flagella and swarming.
FlhDC has been shown to repress cell division during P.
mirabilis swarming, suggesting that UmoB could repress
cell division via FlhDC. This biological function, if
maintained in S. enterica, could sustain a putative
negative control of cell division and growth exerted by
IgaA in intracellular bacteria.
Length = 705
Score = 28.9 bits (65), Expect = 0.27
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 8 MVAFVVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFS 59
M V+IL + L+ L R+ L+F P RK T D+ S
Sbjct: 1 MSTIVIILAILLACLIVAGWLLRFKARRRPRLPHLLSFAKPTTRKLTADERS 52
>gnl|CDD|182722 PRK10778, dksA, RNA polymerase-binding transcription factor;
Provisional.
Length = 151
Score = 28.2 bits (62), Expect = 0.40
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 31 VYRHYLHRINANLNFDNPVYRKTTEDQFSLE 61
V R H + NF +PV R E++FSLE
Sbjct: 55 VDRTVTHMQDEAANFPDPVDRAAQEEEFSLE 85
>gnl|CDD|234691 PRK00220, PRK00220, putative glycerol-3-phosphate acyltransferase
PlsY; Provisional.
Length = 198
Score = 27.4 bits (62), Expect = 0.76
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 5 FSGMVAFVVILVCTII--------LLLSGLICLIVYRHY--LHRI 39
+ +VA ++ + + ++ L LI+YRH + R+
Sbjct: 142 LAALVAALIAPIYVWWFPPDWQFTIPVALLSVLIIYRHRDNIQRL 186
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 26.8 bits (60), Expect = 1.2
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 1 MTTRFSGMVAFVVILVCTIILLLSGLICLIV 31
+ RF+ + V + C ++ G + ++
Sbjct: 160 VIQRFTLIALIFVFVTCIYCIIAYGALFFVI 190
>gnl|CDD|223032 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
Length = 542
Score = 26.8 bits (59), Expect = 1.5
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 2 TTRFSGMVAFVVILVCTIILLLSGLI--CLIVYRHYLHRINANLNFDNPVY 50
TR +AF++ ++CT LL L+ I+YR + LN VY
Sbjct: 395 WTR--HYLAFLLAIICTCAALLVALVVWGCILYRRSNRKPYEVLNPFETVY 443
>gnl|CDD|236054 PRK07573, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 640
Score = 26.7 bits (60), Expect = 1.5
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 10/33 (30%)
Query: 42 NLNFDNPVYRKTTEDQFSLEKNPY-TPARIYPT 73
NL FD +Y + T + NPY TP RIYP
Sbjct: 378 NL-FD--MYERITGE------NPYETPMRIYPA 401
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 25.8 bits (57), Expect = 2.6
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 5 FSGMVAFVVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRK 52
S M+ V + L L R + R A+ ++DNP Y++
Sbjct: 127 ISSMLDSAPEYVKELNRLRKELP--PEVRAAIKRCEASGDYDNPEYQE 172
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 25.9 bits (56), Expect = 3.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 18 TIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSLEKNPYT 66
++ +L SGL+ L VYR+ L R+ +L ++E +LE NP +
Sbjct: 416 SLPMLPSGLLSLSVYRNQLTRLPESL------IHLSSETTVNLEGNPLS 458
>gnl|CDD|223785 COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L
(chain K) [Energy production and conversion].
Length = 100
Score = 24.9 bits (55), Expect = 3.4
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 12 VVILVCTIILLLSGLICLIVYRHYLHRINAN 42
+V+L+ ++L + + + + YL ++
Sbjct: 29 IVMLMSIELMLNAVNLNFVAFSSYLGDLDGQ 59
>gnl|CDD|223443 COG0366, AmyA, Glycosidases [Carbohydrate transport and
metabolism].
Length = 505
Score = 25.7 bits (56), Expect = 3.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 32 YRHYLHRINANLNFDNPVYRK 52
Y H +LN++NP R+
Sbjct: 158 YLHLFSSEQPDLNWENPEVRE 178
>gnl|CDD|217363 pfam03094, Mlo, Mlo family. A family of plant integral membrane
proteins, first discovered in barley. Mutants lacking
wild-type Mlo proteins show broad spectrum resistance
to the powdery mildew fungus, and dysregulated cell
death control, with spontaneous cell death in response
to developmental or abiotic stimuli. Thus wild-type Mlo
proteins are thought to be inhibitors of cell death
whose deficiency lowers the threshold required to
trigger the cascade of events that result in plant cell
death. Mlo proteins are localised in the plasma
membrane and possess seven transmembrane regions; thus
the Mlo family is the only major higher plant family to
possess 7 transmembrane domains. It has been suggested
that Mlo proteins function as G-protein coupled
receptors in plants; however the molecular and
biological functions of Mlo proteins remain to be fully
determined.
Length = 481
Score = 25.4 bits (56), Expect = 4.5
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 11 FVVILVCTIILLLSGLICLIVYRHYLHRI 39
+ V +VCT+++L+S I+ LH++
Sbjct: 12 WAVAVVCTVLVLIS-----ILLERGLHKL 35
>gnl|CDD|218602 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 807
Score = 25.0 bits (55), Expect = 5.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 11 FVVILVCTIILLLSGLICLIVYRHYLHR 38
V L+ T +LLL G++C V Y
Sbjct: 143 LGVCLLLTTVLLLFGVVCAFVTNQYTQT 170
>gnl|CDD|151156 pfam10640, Pox_ATPase-GT, mRNA capping enzyme N-terminal, ATPase
and guanylyltransferase. This domain is the N-terminus
of the large subunit viral mRNA capping enzyme, and
carries both the ATPase and the guanylyltransferase
activities of the enzyme. The guanylyltransferase
enzymatic region runs from residues 242
(leucine)-273(arginine), the core of the acitve site
being the lysine residue at 260. The ATPase activity is
at the very N-terminal part of the domain.
Length = 314
Score = 24.9 bits (55), Expect = 6.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 1 MTTRFSGMVAFVVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVY 50
+T++ G+ V + V G+ C + Y+ R N + N DNPV
Sbjct: 234 ITSKTDGVGTVVKVTV-------KGIYCYFSHLGYIIRYNLSRNIDNPVV 276
>gnl|CDD|217059 pfam02480, Herpes_gE, Alphaherpesvirus glycoprotein E.
Glycoprotein E (gE) of Alphaherpesvirus forms a complex
with glycoprotein I (gI) (pfam01688), functioning as an
immunoglobulin G (IgG) Fc binding protein. gE is
involved in virus spread but is not essential for
propagation.
Length = 437
Score = 24.7 bits (54), Expect = 6.7
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 3 TRFSGMVAFVVILVCTIILLLSGLICLIVYRHYL-HRINANLNFDNPVY 50
TR ++ V+ ++L++ L + V R LN +PVY
Sbjct: 347 TRPYLLLLAGVLGAAVLLLVVGLLAWVCVTRRRRRKPYAVILNPFSPVY 395
>gnl|CDD|217309 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 25.0 bits (55), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 11 FVVILVCTIILLLSGLICLIVYRHYLHRINANLNFDN 47
F +I I+L LSG++ +I+ R L R A N +
Sbjct: 198 FSIINSLVIVLFLSGIVSMILMRT-LRRDIARYNELD 233
>gnl|CDD|198410 cd10428, LFG_like, Proteins similar to and including lifeguard
(LFG), a putative regulator of apoptosis. Lifeguard
(LFG) inhibits Fas-mediated apoptosis and interacts with
the death receptor FasR/CD95/Apo1. LFG has been shown to
interact with Bax and is supposed to be integral to
cellular membranes such as the ER. A close homolog,
PP1201 or RECS1, appears located in the Golgi
compartment and also interacts with the Fas receptor
CD95/Apo1. PP1201 is expressed in response to shear
stress.
Length = 217
Score = 24.4 bits (54), Expect = 6.8
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 13 VILVCTIILLLSGLICLIVYRHYLHRINANL 43
V+ V +I+LL+ G++ + Y +LH + A+L
Sbjct: 135 VLFVLSIVLLIFGIVAIFFYVKWLHIVYASL 165
>gnl|CDD|224195 COG1276, PcoD, Putative copper export protein [Inorganic ion
transport and metabolism].
Length = 289
Score = 24.3 bits (53), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 5/24 (20%)
Query: 4 RFSGMVAFVVILVCTIILLLSGLI 27
RFS F V + LL+SGL+
Sbjct: 185 RFSLYGHFAVAV-----LLVSGLL 203
>gnl|CDD|226775 COG4325, COG4325, Predicted membrane protein [Function unknown].
Length = 464
Score = 24.4 bits (53), Expect = 8.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 5 FSGMVAFVVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQFSLEKNP 64
G AF+ + T+ LLL+ +I + ++LH + ++ DN + K L
Sbjct: 151 RDGQGAFIPKVAVTVSLLLA-IISIGALIYFLHHLMHSIQIDN-IIDKVRLRTLGLVD-- 206
Query: 65 YTPARIYPTS 74
++YP S
Sbjct: 207 ----QLYPES 212
>gnl|CDD|222242 pfam13584, BatD, Oxygen tolerance. This family of proteins carries
up to three membrane spanning regions and is involved in
tolerance to oxygen in in Bacteroides spp.
Length = 488
Score = 24.5 bits (54), Expect = 8.5
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 2 TTRFSGMVAFVVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVYRKTTEDQ 57
+ F G F ++L+ ++L ++ LI+YR R + +T +
Sbjct: 422 GSPFFGSTLFWLLLLLPLLL---FVLLLILYRKRRARNA------DVAGNRTKKAN 468
>gnl|CDD|203101 pfam04831, Popeye, Popeye protein conserved region. The function
of Popeye proteins is not well understood. They are
predominantly expressed in cardiac and skeletal muscle.
This family represents a conserved region which
includes three potential transmembrane domains.
Length = 154
Score = 24.2 bits (53), Expect = 9.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 21 LLLSGLICLIVYRHYLHRINANLNFDNPVY---RKTTEDQF 58
LLLSG I + +LH I + D+P + R + E +F
Sbjct: 53 LLLSGRIRVSQDGQFLHYIFPHQFLDSPEWESLRPSEEGKF 93
>gnl|CDD|213052 cd12087, TM_EGFR-like, Transmembrane domain of the Epidermal
Growth Factor Receptor family of Protein Tyrosine
Kinases. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EGFR (HER, ErbB)
subfamily members include EGFR (HER1, ErbB1), HER2
(ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar
proteins. They are receptor PTKs (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane (TM) helix, and a cytoplasmic region with
a tyr kinase domain and a regulatory C-terminal tail.
They are activated by ligand-induced dimerization,
resulting in the phosphorylation of tyr residues in the
C-terminal tail, which serve as binding sites for
downstream signaling molecules. Collectively, they can
recognize a variety of ligands including EGF, TGFalpha,
and neuregulins, among others. All four subfamily
members can form homo- or heterodimers. HER3 contains
an impaired kinase domain and depends on its
heterodimerization partner for activation. EGFR
subfamily members are involved in signaling pathways
leading to a broad range of cellular responses
including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. The TM
domain not only serves as a membrane anchor, but also
plays an important role in receptor dimerization and
optimal activation. Mutations in the TM domain of EGFR
family RTKs have been associated with increased breast
cancer risk.
Length = 38
Score = 22.9 bits (50), Expect = 9.8
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 8 MVAFVVILVCTIILLLSGLICLIVYRHYLHR 38
+A V+ ++++L ++ L R ++ R
Sbjct: 7 SIAAGVVGGLLVLVILGLIVFLFRRRRHIKR 37
>gnl|CDD|237167 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 520
Score = 24.2 bits (53), Expect = 9.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 12 VVILVCTIILLLSGLICLIVYRHYLHRINANLN 44
VVILV + +L+ G++ L + I N
Sbjct: 473 VVILVLALAVLILGILALFLPEILDSLIEPAAN 505
>gnl|CDD|236833 PRK11059, PRK11059, regulatory protein CsrD; Provisional.
Length = 640
Score = 24.4 bits (54), Expect = 9.8
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 2 TTRFSGMVAFVVILVCTIILLLSGLI 27
TT+ S V +V L + LL +
Sbjct: 8 TTKLSAFVTLLVALA-MFVTLLGCTL 32
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.424
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,285,077
Number of extensions: 338397
Number of successful extensions: 1003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 992
Number of HSP's successfully gapped: 74
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)