RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4622
         (84 letters)



>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
           membrane protein; 2.20A {Bacteroides thetaiotaomicron}
           PDB: 3k8m_A* 3k8l_A*
          Length = 669

 Score = 26.2 bits (58), Expect = 1.1
 Identities = 6/25 (24%), Positives = 7/25 (28%)

Query: 32  YRHYLHRINANLNFDNPVYRKTTED 56
                   N +   DN  Y    ED
Sbjct: 217 TGTKADEDNPDTGTDNAKYLYYGED 241


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 22/56 (39%)

Query: 7    GMVAF------------VVILVCTIILLLSGLICLIVYRHYLHRINANLNFDNPVY 50
            GM+A              +  V   +   +G +  IV          N N +N  Y
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV----------NYNVENQQY 1853


>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
          structural genomics, seattle structural genomics CEN
          infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
          avium} PDB: 3uwr_A*
          Length = 286

 Score = 24.5 bits (54), Expect = 5.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 1  MTTRFSGMVAFV 12
          MT R  G VAFV
Sbjct: 5  MTGRVEGKVAFV 16


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,264,307
Number of extensions: 59614
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 6
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.3 bits)