RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4622
         (84 letters)



>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
           {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
          Length = 144

 Score = 26.0 bits (57), Expect = 0.49
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 6/42 (14%)

Query: 27  ICLIVYRHYLHRINANLNFDNPVYRKTT------EDQFSLEK 62
           I    +      I  +L+   P+Y++T        D F  E 
Sbjct: 97  IVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEV 138


>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
           {Escherichia coli [TaxId: 562]}
          Length = 152

 Score = 24.8 bits (54), Expect = 1.2
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 6   SGMVAFVVILV---CTIILLLSGLICLI--VYRHYLHRINANLNFDNPVYRKTT------ 54
            G+     I+V    T  +    L  L+   +    + +   L+  +P+Y++T       
Sbjct: 71  IGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFG 130

Query: 55  EDQFSLEK 62
            + F  EK
Sbjct: 131 REHFPWEK 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 309,907
Number of extensions: 11426
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 8
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.1 bits)