BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4624
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EGX|A Chain A, Solution Structure Of The Ena-Vasp Homology 1 (Evh1)
Domain Of Human Vasodilator-Stimulated Phosphoprotein
(Vasp)
Length = 115
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 78 FLITAYNSQVDK--ILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFR 135
F + Q D+ +++ +V+ G + QA+ F W+D WGLNF S DA QF
Sbjct: 47 FRVVGRKMQPDQQVVINCAIVR-GVKYNQATPNFHQWRD--ARQVWGLNFGSKEDAAQFA 103
Query: 136 ECCVSTI 142
S +
Sbjct: 104 AGMASAL 110
>pdb|1I7A|A Chain A, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|B Chain B, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|C Chain C, Evh1 Domain From Murine Homer 2bVESL 2
pdb|1I7A|D Chain D, Evh1 Domain From Murine Homer 2bVESL 2
Length = 111
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 89 KILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRE 136
K++ + P + S+ F W D N +GL F+S + +F E
Sbjct: 54 KVIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSELQLTKFAE 101
>pdb|2P8V|A Chain A, Crystal Structure Of Human Homer3 Evh1 Domain
Length = 117
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 65 VNITCIQDAPNCIFLITAYNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLN 124
+ ++ DA ++ I + K + V P + S+ F W D N +GL
Sbjct: 34 LTVSYFYDATRNVYRIISIGGA--KAIINSTVTPNMTFTKTSQKFGQWADSRANTVYGLG 91
Query: 125 FTSPIDARQFRE 136
F S QF E
Sbjct: 92 FASEQHLTQFAE 103
>pdb|2JP2|A Chain A, Solution Structure And Resonance Assignment Of The N-
Terminal Evh1 Domain From The Human Spred2 Protein
(Sprouty-Related Protein With Evh1 Domain Isoform 2)
Length = 126
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 104 QASECFVYWKDPNTNDTWGLNFTSPIDARQF 134
+A+ F +WK N +GL F SP DAR F
Sbjct: 85 KANPTFHHWKVDNRK--FGLTFQSPADARAF 113
>pdb|1DDW|A Chain A, Homer Evh1 Domain Unliganded
Length = 120
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 65 VNITCIQDAPNCIFLITAYNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLN 124
V ++ D+ ++ I + + K + + P + S+ F W D N +GL
Sbjct: 32 VTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNXTFTKTSQKFGQWADSRANTVYGLG 89
Query: 125 FTSPIDARQFRE 136
F+S +F E
Sbjct: 90 FSSEHHLSKFAE 101
>pdb|1DDV|A Chain A, Crystal Structure Of The Homer Evh1 Domain With Bound
Mglur Peptide
Length = 111
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 65 VNITCIQDAPNCIFLITAYNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLN 124
V ++ D+ ++ I + + K + + P + S+ F W D N +GL
Sbjct: 32 VTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLG 89
Query: 125 FTSPIDARQFRE 136
F+S +F E
Sbjct: 90 FSSEHHLSKFAE 101
>pdb|3V10|A Chain A, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
pdb|3V10|B Chain B, Crystal Structure Of The Collagen Binding Domain Of
Erysipelothrix Rhusiopathiae Surface Protein Rspb
Length = 321
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 20/81 (24%)
Query: 82 AYNSQVDKI-----------LDVKLV---QPGTRIGQASECFVYWK------DPNTNDTW 121
AY + DKI LD +++ QPGT G YWK + + + W
Sbjct: 124 AYRGEDDKIAELPTNLGLGSLDKQMITISQPGTPTGVEPSPIFYWKTGTFSTEVHGDMNW 183
Query: 122 GLNFTSPIDARQFRECCVSTI 142
LN SP +A Q + TI
Sbjct: 184 WLNINSPKEAVQSDVKVIDTI 204
>pdb|2D9Q|B Chain B, Crystal Structure Of The Human Gcsf-Receptor Signaling
Complex
Length = 313
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 97 QPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRECCVSTITFYIL 147
QPG I Q +C + K +W L P++A Q+ C + T Y L
Sbjct: 233 QPGLHINQ--KCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTL 281
>pdb|1J2G|A Chain A, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|B Chain B, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|C Chain C, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
pdb|1J2G|D Chain D, Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90
Co- Crystallized With 8-Azaxanthine
Length = 319
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 108 CFVY----WKDPNTNDTWGLNFTSPIDARQFRECCVS 140
FVY WK NT D++G N + + A Q R+ S
Sbjct: 203 LFVYLNIKWKYKNTEDSFGTNPENYVAAEQIRDIATS 239
>pdb|1I2H|A Chain A, Crystal Structure Analysis Of Psd-Zip45(Homer1cVESL-1l)
Conserved Homer 1 Domain
Length = 168
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 65 VNITCIQDAPNCIFLITAYNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLN 124
V ++ D+ ++ I + + K + + P + S+ F W D N +GL
Sbjct: 37 VTVSYFYDSTRNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLG 94
Query: 125 FTSPIDARQFRE 136
F+S +F E
Sbjct: 95 FSSEHHLSKFAE 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,894,647
Number of Sequences: 62578
Number of extensions: 183891
Number of successful extensions: 526
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 11
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)