RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4624
(160 letters)
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain,
signaling protein; 1.80A {Rattus norvegicus} SCOP:
b.55.1.4
Length = 168
Score = 86.9 bits (214), Expect = 2e-22
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 27 TSKRRDGHLLRLWAEVFHVSASGAGSVKWQQVSEDLVPVNITCIQDAPNCIFLITAYNSQ 86
+ + A VF + + W S+ V V+ D+ ++ I + +
Sbjct: 3 PEFMGEQPIFSTRAHVFQIDPNTKK--NWVPTSKHAVTVSY--FYDSTRNVYRIISLDGS 58
Query: 87 VDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRECCVSTI 142
K + + P + S+ F W D N +GL F+S +F E
Sbjct: 59 --KAIINSTITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFK 112
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold,
signaling protein; 1.70A {Rattus norvegicus} SCOP:
b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Length = 120
Score = 79.0 bits (194), Expect = 7e-20
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 39 WAEVFHVSASGAGSVKWQQVSEDLVPVNITCIQDAPNCIFLITAYNSQVDKILDVKLVQP 98
A VF + + + W S+ V V+ D+ ++ I + + K + + P
Sbjct: 10 RAHVFQIDPNTKKN--WVPTSKHAVTVSY--FYDSTRNVYRIISLDGS--KAIINSTITP 63
Query: 99 GTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRECC 138
+ S+ F W D N +GL F+S +F E
Sbjct: 64 NMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKF 103
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition,
actin dynamics, contractIle protein; 1.80A {Mus
musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Length = 112
Score = 74.6 bits (183), Expect = 3e-18
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 32 DGHLLRLWAEVFHVSASGAGSVKWQQVSEDLVPVNITCIQDAPNCIFLITAYNSQVDKIL 91
+ + + A V + + KW + N F + Q +++
Sbjct: 3 EQSICQARAAVMVYDDA---NKKWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVV 59
Query: 92 DVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFREC 137
+ G + QA++ F W+D +GLNF S DA F
Sbjct: 60 INCAIPKGLKYNQATQTFHQWRDARQ--VYGLNFGSKEDANVFASA 103
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven
stranded anti-parallel beta barrel closed by AN alpha
helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Length = 130
Score = 74.8 bits (183), Expect = 4e-18
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 32 DGHLLRLWAEVFHVSASGAGSVKWQQVSE-DLVPVNITCIQDAPNCIFLITAYNSQVDKI 90
+ + + A V + S KW + I + + F + Q ++
Sbjct: 3 EQSICQARASVMVYDDT---SKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQV 59
Query: 91 LDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRE 136
+ + G + QA+ F W+D +GLNF S +A F
Sbjct: 60 VINYSIVKGLKYNQATPTFHQWRDARQ--VYGLNFASKEEATTFSN 103
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA,
poly-proline-binding domain, signaling protein; NMR
{Homo sapiens} SCOP: b.55.1.4
Length = 115
Score = 64.3 bits (156), Expect = 3e-14
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 32 DGHLLRLWAEVFHVSASGAGSVKWQQVSE-DLVPVNITCIQDAPNCIFLITAYNSQVDKI 90
+ + A V + +W + + F + Q D+
Sbjct: 3 ETVICSSRATVMLYDDG---NKRWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 59
Query: 91 LDVK-LVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRE 136
+ + + G + QA+ F W+D WGLNF S DA QF
Sbjct: 60 VVINCAIVRGVKYNQATPNFHQWRDARQ--VWGLNFGSKEDAAQFAA 104
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain,
human sprouty-related, EVH1 domain-containing PR Q7Z699;
2.45A {Homo sapiens}
Length = 130
Score = 54.3 bits (130), Expect = 2e-10
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 11/116 (9%)
Query: 26 QTSKRRDGHLLRLWAEVFHVSASG-----AGSVKWQQVSEDLVPVNITCIQDAPNCIFLI 80
R+ A V S G V+ + ++ F I
Sbjct: 4 HHHHHSHMSYARVRAVVMTRDDSSGGWLPLGGSGLSSVTV----FKVPHQEENGCADFFI 59
Query: 81 TAYNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRE 136
+ ++ +++ + + F +WK + +GL F SP DAR F
Sbjct: 60 RGERLRDKMVVLECMLKKDLIYNKVTPTFHHWKIDDK--KFGLTFQSPADARAFDR 113
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A
{Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Length = 118
Score = 43.8 bits (103), Expect = 1e-06
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 32 DGHLLRLWAEVFHVSASGAGSVKWQQVS-EDLVPVNITCIQ---DAPNCIFLITAYNSQV 87
D R+ A V S S W Q+ L V ++ D+ FL+ +
Sbjct: 3 DDSYARVRAVVMTRDDS---SGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRD 59
Query: 88 DKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRE 136
++ +++ + + F +W+ + +GL F SP DAR F
Sbjct: 60 KTVVLECVLRRDLVYNKVTPTFHHWRIGDK--KFGLTFQSPADARAFDR 106
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2;
solution structure, structural genomics, structural
genomics consortium, SGC; NMR {Homo sapiens}
Length = 126
Score = 41.5 bits (97), Expect = 1e-05
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 26 QTSKRRDGHLLRLWAEVFHVSASGAGSVKWQQVSEDLVPV-NITCIQDAPNCIFLITAYN 84
+T D +++R+ A V S G + V V + + FLI
Sbjct: 6 ETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGER 65
Query: 85 SQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRE 136
+ ++ V+ +A+ F +WK N +GL F SP DAR F
Sbjct: 66 QKDKLVVLECYVRKDLVYTKANPTFHHWKVDNR--KFGLTFQSPADARAFDR 115
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 27.6 bits (61), Expect = 0.59
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 86 QVDKILDVKLVQPGTRIGQASECFVYWKD-PNTNDTW 121
+VD+IL+V + + + V W P TW
Sbjct: 13 EVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTW 49
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs,
transferase; 2.40A {Infectious bursal disease virus}
PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Length = 852
Score = 28.5 bits (62), Expect = 1.1
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 23/146 (15%)
Query: 9 SCAPLMRKAYRYEDSPWQTSKRRDGHLLRLWAEVFHVSASGAGSVKWQQVSEDLVPVNIT 68
SC L KA RY+ S W T R +W+ + W +S P N+
Sbjct: 321 SCGLLFPKAERYDKSTWLTKTR------NIWSAPSPTHLMI-SMITWPVMSN--SPNNVL 371
Query: 69 CIQDAPNCIFLITAYNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFTSP 128
I+ P+ ++ + +++I++ L + ++ +TW
Sbjct: 372 NIEGCPS-LYKFNPFRGGLNRIVEWILAPEEPKALVYADNIYIVHS----NTW-----YS 421
Query: 129 IDARQFRECC----VSTITFYILFKF 150
ID + C + +YIL +
Sbjct: 422 IDLEKGEANCTRQHMQAAMYYILTRG 447
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 4.3
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 15/48 (31%)
Query: 33 GHLLRLWAEVFHVSASGA----GSVKWQQVSEDLVPVNITCIQDAPNC 76
GH A+GA G++ Q ++ ++P N
Sbjct: 1383 GHPK---------GAAGAWMMNGAL--QILNSGIIPGNRNADNVDKIL 1419
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.443
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,373,132
Number of extensions: 119955
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 16
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)