RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4624
         (160 letters)



>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 145

 Score = 95.8 bits (238), Expect = 1e-26
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 40  AEVFHVSASGAGSVKWQQVSEDLVPVNITCIQDAPNCIFLITAYNSQVDKILDVKLVQPG 99
           A VF +         W   S+  V V+     D+   ++ I + +    K +    + P 
Sbjct: 13  AHVFQID--PNTKKNWVPTSKHAVTVSY--FYDSTRNVYRIISLDGS--KAIINSTITPN 66

Query: 100 TRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRECC 138
               + S+ F  W D   N  +GL F+S     +F E  
Sbjct: 67  MTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKF 105


>d1evha_ b.55.1.4 (A:) Enabled {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 52.7 bits (126), Expect = 2e-10
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 54  KWQQVSEDLVPVNITCIQDAPNCIFLITAYNSQVDKILDVKLVQPGTRIGQASECFVYWK 113
           KW           +       N  F +     Q  +++    +  G +  QA++ F  W+
Sbjct: 21  KWVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQWR 80

Query: 114 DPNTNDTWGLNFTSPIDARQFRE 136
           D      +GLNF S  DA  F  
Sbjct: 81  DARQ--VYGLNFGSKEDANVFAS 101


>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing
           protein 1, Spred-1 {Western clawed frog (Xenopus
           tropicalis) [TaxId: 8364]}
          Length = 114

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 44  HVSASGAGSVKWQQVS-EDLVPVNITCIQ---DAPNCIFLITAYNSQVDKILDVKLVQPG 99
            V      S  W Q+    L  V ++      D+    FL+     +   ++   +++  
Sbjct: 8   VVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRD 67

Query: 100 TRIGQASECFVYWKDPNTNDTWGLNFTSPIDARQFRE 136
               + +  F +W+  +    +GL F SP DAR F  
Sbjct: 68  LVYNKVTPTFHHWRIGDKK--FGLTFQSPADARAFDR 102


>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 114

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 67  ITCIQDAPNCIFLITAYNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTNDTWGLNFT 126
              ++D P   + +  ++ +  K+L  + +            F  +          LNF 
Sbjct: 37  ACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQ--VALNFA 94

Query: 127 SPIDARQFRE 136
           +  +A++FR+
Sbjct: 95  NEEEAKKFRK 104


>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 33.0 bits (75), Expect = 0.005
 Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 54  KWQQVSE-DLVPVNITCIQDAPNCIFLITAYNSQVD-KILDVKLVQPGTRIGQASECFVY 111
           +W            +    +     F +     Q D +++    +  G +  QA+  F  
Sbjct: 22  RWLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQ 81

Query: 112 WKDPNTNDTWGLNFTSPIDARQFRE 136
           W+D      WGLNF S  DA QF  
Sbjct: 82  WRDARQ--VWGLNFGSKEDAAQFAA 104


>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
           domain protein 1) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 69

 Score = 28.3 bits (63), Expect = 0.10
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 86  QVDKILDVKLVQPGTRIGQASECFVYWKD-PNTNDTW 121
             ++I+D +         Q  +  V W+       TW
Sbjct: 8   VPERIIDSQRASLEDGTSQL-QYLVKWRRLNYDEATW 43


>d2pgga1 e.8.1.4 (A:31-804) Viral RNA polymerase {Avian infectious
           bursal disease virus [TaxId: 10995]}
          Length = 774

 Score = 27.3 bits (60), Expect = 0.89
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 9   SCAPLMRKAYRYEDSPWQTSKRRDGHLLRLWAEVF--HVSASGAGSVKWQQVSEDLVPVN 66
           SC  L  KA RY+ S W T  R       +W+     H+  S    + W  +S    P N
Sbjct: 284 SCGLLFPKAERYDKSTWLTKTR------NIWSAPSPTHLMIS---MITWPVMSNS--PNN 332

Query: 67  ITCIQDAPN 75
           +  I+  P+
Sbjct: 333 VLNIEGCPS 341


>d1azoa_ c.52.1.14 (A:) DNA mismatch repair protein MutH from
           {Escherichia coli [TaxId: 562]}
          Length = 226

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 83  YNSQVDKILDVKLVQPGTRIGQASECFVYWKDPNTND-TWGLNF-TSPIDARQFRECCVS 140
           +   +D I+  ++ +   R G+  +  +  K  N    T  +      I           
Sbjct: 155 WEELMDMIVLGQVERITARHGEYLQ--IRPKAANAKALTEAIGARGERILTLPRG----- 207

Query: 141 TITFYILFKFTRSLLRNKFL 160
              FY+   FT +LL   FL
Sbjct: 208 ---FYLKKNFTSALLARHFL 224


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 24.4 bits (53), Expect = 8.0
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 107 ECFVYWKDPNTNDTWGLNFTSPIDARQFRECCVSTITFY 145
           + F YW    T++      T     R+   C V T+  Y
Sbjct: 120 DVFEYWNGKTTSELATSYMTEET--REAVNCDVFTVGNY 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.443 

Gapped
Lambda     K      H
   0.267   0.0530    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 604,371
Number of extensions: 25178
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 12
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.1 bits)