Query psy4625
Match_columns 120
No_of_seqs 130 out of 1139
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 21:37:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4625.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4625hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dms_A Homeobox protein OTX2; 99.9 1.1E-21 3.6E-26 119.8 8.4 67 12-78 3-69 (80)
2 2dmu_A Homeobox protein goosec 99.9 2.4E-21 8.3E-26 115.4 9.7 65 12-76 3-67 (70)
3 2cra_A Homeobox protein HOX-B1 99.9 1.6E-21 5.6E-26 116.1 8.4 65 12-76 3-67 (70)
4 2dmq_A LIM/homeobox protein LH 99.9 1.6E-21 5.5E-26 118.9 8.4 66 13-78 4-69 (80)
5 2da2_A Alpha-fetoprotein enhan 99.9 2.3E-21 7.8E-26 115.4 8.6 67 11-77 2-68 (70)
6 2cue_A Paired box protein PAX6 99.9 9.8E-22 3.4E-26 119.9 6.4 65 12-76 3-67 (80)
7 2da1_A Alpha-fetoprotein enhan 99.9 2.7E-21 9.3E-26 115.1 8.0 66 12-77 3-68 (70)
8 2e1o_A Homeobox protein PRH; D 99.9 7.8E-21 2.7E-25 113.2 9.9 64 13-76 4-67 (70)
9 2dmt_A Homeobox protein BARH-l 99.9 6.7E-21 2.3E-25 116.2 9.7 65 12-76 13-77 (80)
10 2h1k_A IPF-1, pancreatic and d 99.8 4.2E-21 1.4E-25 112.1 8.3 61 15-75 2-62 (63)
11 2djn_A Homeobox protein DLX-5; 99.8 3.1E-21 1.1E-25 114.9 7.8 65 12-76 3-67 (70)
12 2kt0_A Nanog, homeobox protein 99.8 6.7E-21 2.3E-25 117.1 9.4 66 11-76 17-82 (84)
13 1nk2_P Homeobox protein VND; h 99.8 8.9E-21 3.1E-25 114.9 9.6 66 11-76 4-69 (77)
14 2da3_A Alpha-fetoprotein enhan 99.8 5.5E-21 1.9E-25 116.4 8.6 65 12-76 13-77 (80)
15 2vi6_A Homeobox protein nanog; 99.8 3.3E-21 1.1E-25 112.3 7.1 61 14-74 1-61 (62)
16 2m0c_A Homeobox protein arista 99.8 8E-21 2.7E-25 114.3 9.0 68 11-78 4-71 (75)
17 1puf_A HOX-1.7, homeobox prote 99.8 1.1E-20 3.9E-25 114.4 9.7 66 11-76 8-73 (77)
18 2hdd_A Protein (engrailed home 99.8 9.9E-21 3.4E-25 109.9 7.7 58 16-73 3-60 (61)
19 1ig7_A Homeotic protein MSX-1; 99.8 1.7E-20 5.8E-25 107.8 8.4 57 17-73 1-57 (58)
20 1yz8_P Pituitary homeobox 2; D 99.8 6E-21 2.1E-25 113.1 6.4 65 14-78 1-65 (68)
21 1ahd_P Antennapedia protein mu 99.8 1.5E-20 5.2E-25 111.4 7.9 64 16-79 2-65 (68)
22 3a01_A Homeodomain-containing 99.8 5E-20 1.7E-24 115.3 10.6 68 12-79 13-80 (93)
23 1zq3_P PRD-4, homeotic bicoid 99.8 1.7E-20 6E-25 111.1 8.0 63 16-78 2-64 (68)
24 1wh5_A ZF-HD homeobox family p 99.8 1.5E-20 5E-25 114.8 7.9 62 12-73 13-78 (80)
25 2r5y_A Homeotic protein sex co 99.8 1.5E-20 5.1E-25 116.6 7.9 66 10-75 22-87 (88)
26 1ftt_A TTF-1 HD, thyroid trans 99.8 3.7E-20 1.2E-24 109.7 9.0 63 16-78 2-64 (68)
27 2l7z_A Homeobox protein HOX-A1 99.8 2.5E-20 8.6E-25 111.8 8.3 64 14-77 5-68 (73)
28 2da4_A Hypothetical protein DK 99.8 1.5E-20 5E-25 114.7 7.4 64 12-75 4-71 (80)
29 1bw5_A ISL-1HD, insulin gene e 99.8 1.6E-20 5.4E-25 110.6 7.3 62 15-76 2-63 (66)
30 1fjl_A Paired protein; DNA-bin 99.8 3.6E-20 1.2E-24 113.2 8.7 64 12-75 14-77 (81)
31 1jgg_A Segmentation protein EV 99.8 3.5E-20 1.2E-24 107.2 8.0 58 17-74 2-59 (60)
32 1b8i_A Ultrabithorax, protein 99.8 2.5E-20 8.5E-25 114.0 7.8 64 12-75 16-79 (81)
33 1akh_A Protein (mating-type pr 99.8 2.1E-20 7.1E-25 108.4 6.8 60 13-72 2-61 (61)
34 2k40_A Homeobox expressed in E 99.8 4.2E-20 1.4E-24 109.1 8.1 62 16-77 1-62 (67)
35 2cuf_A FLJ21616 protein; homeo 99.8 3E-20 1E-24 116.7 7.4 66 12-77 3-83 (95)
36 3rkq_A Homeobox protein NKX-2. 99.8 5.8E-20 2E-24 105.3 7.8 57 16-72 2-58 (58)
37 1b72_A Protein (homeobox prote 99.8 6E-20 2E-24 115.8 8.2 66 12-77 30-95 (97)
38 2ecc_A Homeobox and leucine zi 99.8 7.6E-20 2.6E-24 110.2 8.0 59 19-77 6-64 (76)
39 1x2n_A Homeobox protein pknox1 99.8 1.9E-19 6.3E-24 107.9 9.7 66 12-77 3-71 (73)
40 3a02_A Homeobox protein arista 99.8 5.8E-20 2E-24 106.2 7.0 57 19-75 2-58 (60)
41 1uhs_A HOP, homeodomain only p 99.8 1.5E-19 5E-24 108.1 9.0 61 17-77 2-63 (72)
42 1wh7_A ZF-HD homeobox family p 99.8 3.8E-20 1.3E-24 112.9 6.5 61 12-73 13-78 (80)
43 2dn0_A Zinc fingers and homeob 99.8 8.4E-20 2.9E-24 110.3 7.9 63 15-77 7-69 (76)
44 2da5_A Zinc fingers and homeob 99.8 1.5E-19 5.2E-24 108.9 8.9 60 18-77 9-68 (75)
45 2hi3_A Homeodomain-only protei 99.8 1.9E-19 6.5E-24 107.9 9.2 61 17-77 3-64 (73)
46 3a03_A T-cell leukemia homeobo 99.8 1.3E-19 4.4E-24 103.5 7.6 54 21-74 2-55 (56)
47 1wi3_A DNA-binding protein SAT 99.8 1.9E-19 6.3E-24 105.4 7.9 61 11-71 2-63 (71)
48 3nar_A ZHX1, zinc fingers and 99.8 1.3E-19 4.3E-24 114.1 7.7 65 11-75 20-84 (96)
49 2ly9_A Zinc fingers and homeob 99.8 2.2E-19 7.7E-24 107.8 8.4 62 16-77 6-67 (74)
50 1puf_B PRE-B-cell leukemia tra 99.8 3.5E-19 1.2E-23 106.8 8.9 63 17-79 2-67 (73)
51 1b72_B Protein (PBX1); homeodo 99.8 1.8E-19 6E-24 111.4 7.3 62 17-78 2-66 (87)
52 2dmn_A Homeobox protein TGIF2L 99.8 4.1E-19 1.4E-23 109.0 8.6 66 13-78 4-72 (83)
53 1du6_A PBX1, homeobox protein 99.8 2.3E-19 7.9E-24 104.9 5.6 59 15-73 2-63 (64)
54 2ecb_A Zinc fingers and homeob 99.8 1.7E-18 5.6E-23 107.5 9.1 58 22-79 17-74 (89)
55 1k61_A Mating-type protein alp 99.8 1.3E-18 4.4E-23 100.5 7.8 55 20-74 2-59 (60)
56 2da6_A Hepatocyte nuclear fact 99.8 1.8E-18 6.1E-23 109.4 8.7 64 13-76 3-87 (102)
57 2cqx_A LAG1 longevity assuranc 99.8 6.9E-19 2.3E-23 105.3 5.7 60 16-75 8-68 (72)
58 3d1n_I POU domain, class 6, tr 99.8 2.4E-18 8.1E-23 116.3 8.7 62 12-73 89-150 (151)
59 1mnm_C Protein (MAT alpha-2 tr 99.8 2.5E-18 8.4E-23 106.3 8.0 59 14-72 25-86 (87)
60 3nau_A Zinc fingers and homeob 99.8 3E-18 1E-22 100.2 7.2 52 23-74 11-62 (66)
61 2xsd_C POU domain, class 3, tr 99.8 1.5E-18 5E-23 118.8 6.8 65 13-77 96-160 (164)
62 1e3o_C Octamer-binding transcr 99.8 1.9E-18 6.4E-23 117.8 7.2 62 13-74 98-159 (160)
63 1au7_A Protein PIT-1, GHF-1; c 99.8 2E-18 7E-23 116.1 7.2 63 12-74 83-145 (146)
64 2l9r_A Homeobox protein NKX-3. 99.8 2.8E-18 9.5E-23 101.8 6.9 58 20-77 8-65 (69)
65 1le8_B Mating-type protein alp 99.8 4E-18 1.4E-22 104.5 7.9 59 18-76 4-65 (83)
66 2dmp_A Zinc fingers and homeob 99.7 1.1E-17 3.7E-22 103.9 9.7 59 20-78 17-75 (89)
67 1lfb_A Liver transcription fac 99.7 3.6E-18 1.2E-22 107.9 5.9 64 13-76 6-90 (99)
68 2e19_A Transcription factor 8; 99.7 1.2E-17 4E-22 97.8 7.0 54 21-74 8-61 (64)
69 3l1p_A POU domain, class 5, tr 99.7 8.4E-18 2.9E-22 114.1 7.2 61 14-74 94-154 (155)
70 1x2m_A LAG1 longevity assuranc 99.7 7.6E-18 2.6E-22 98.3 5.4 51 25-75 9-60 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 1.5E-17 5.1E-22 113.7 6.5 66 12-77 93-158 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 1.5E-16 5E-21 93.9 6.9 56 22-77 4-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 4.4E-16 1.5E-20 108.9 4.1 61 13-73 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.6 2.2E-15 7.5E-20 88.6 6.3 46 25-70 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 99.5 1.9E-14 6.4E-19 102.0 7.0 59 13-71 139-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.5 3.8E-14 1.3E-18 87.5 7.0 55 21-75 10-67 (89)
77 1mh3_A Maltose binding-A1 home 99.4 2.9E-13 1E-17 102.5 5.5 54 19-72 368-421 (421)
78 2nzz_A Penetratin conjugated G 98.6 2.9E-10 1E-14 58.9 -4.0 20 58-77 1-20 (37)
79 2ys9_A Homeobox and leucine zi 97.2 0.0008 2.7E-08 39.1 4.7 43 24-66 14-56 (70)
80 2glo_A Brinker CG9653-PA; prot 88.1 1 3.6E-05 24.3 4.4 46 20-66 3-48 (59)
81 1hlv_A CENP-B, major centromer 87.2 3.2 0.00011 25.7 6.9 49 19-70 4-52 (131)
82 3hug_A RNA polymerase sigma fa 84.7 3.4 0.00012 24.1 5.8 48 23-75 38-85 (92)
83 2elh_A CG11849-PA, LD40883P; s 83.9 4.6 0.00016 23.5 6.6 44 18-66 18-61 (87)
84 1tc3_C Protein (TC3 transposas 80.1 3.9 0.00013 20.1 5.5 39 22-65 5-43 (51)
85 2o8x_A Probable RNA polymerase 80.0 4 0.00014 22.1 4.6 48 22-74 15-62 (70)
86 2jn6_A Protein CGL2762, transp 79.0 6.4 0.00022 23.1 5.5 42 20-65 3-45 (97)
87 1iuf_A Centromere ABP1 protein 76.5 5.7 0.0002 25.4 5.1 52 17-68 6-61 (144)
88 3c57_A Two component transcrip 75.8 7.9 0.00027 22.8 5.3 48 22-75 27-74 (95)
89 2p7v_B Sigma-70, RNA polymeras 72.4 5.6 0.00019 21.7 3.8 51 22-73 5-55 (68)
90 3mzy_A RNA polymerase sigma-H 71.5 12 0.0004 23.3 5.7 47 23-75 110-156 (164)
91 1jko_C HIN recombinase, DNA-in 71.2 3.4 0.00012 20.7 2.5 39 23-66 6-44 (52)
92 1s7o_A Hypothetical UPF0122 pr 70.5 16 0.00054 22.4 6.1 49 22-75 22-70 (113)
93 1p4w_A RCSB; solution structur 67.4 17 0.00059 21.7 6.4 45 20-70 32-76 (99)
94 2qko_A Possible transcriptiona 66.8 2.2 7.5E-05 28.1 1.4 43 28-71 34-76 (215)
95 2rn7_A IS629 ORFA; helix, all 66.4 18 0.00061 21.4 5.7 45 21-65 5-52 (108)
96 1rp3_A RNA polymerase sigma fa 65.6 10 0.00036 25.2 4.7 47 23-74 188-234 (239)
97 1tty_A Sigma-A, RNA polymerase 64.1 18 0.00062 20.7 5.1 52 22-74 18-69 (87)
98 1je8_A Nitrate/nitrite respons 63.6 18 0.00061 20.5 5.2 47 20-72 19-65 (82)
99 1xsv_A Hypothetical UPF0122 pr 63.4 23 0.00077 21.6 5.7 48 23-75 26-73 (113)
100 2q24_A Putative TETR family tr 62.3 4.7 0.00016 26.0 2.3 41 28-70 21-61 (194)
101 1ku3_A Sigma factor SIGA; heli 61.7 18 0.00061 19.8 5.6 50 22-72 10-59 (73)
102 2hin_A GP39, repressor protein 61.3 8.1 0.00028 22.0 2.9 21 46-66 13-33 (71)
103 1or7_A Sigma-24, RNA polymeras 61.1 17 0.00059 23.4 5.0 30 46-75 159-188 (194)
104 1fi6_A EH domain protein REPS1 60.9 20 0.00069 20.5 4.8 44 22-65 2-50 (92)
105 1fse_A GERE; helix-turn-helix 60.9 18 0.0006 19.5 5.6 47 20-72 9-55 (74)
106 1x3u_A Transcriptional regulat 59.9 19 0.00066 19.7 4.5 44 23-72 17-60 (79)
107 3bd1_A CRO protein; transcript 57.9 7.6 0.00026 21.7 2.5 23 46-68 14-36 (79)
108 1u78_A TC3 transposase, transp 57.6 29 0.001 21.0 5.5 41 21-66 5-45 (141)
109 2rnj_A Response regulator prot 56.8 15 0.00052 21.1 3.8 45 22-72 29-73 (91)
110 2jpc_A SSRB; DNA binding prote 55.1 16 0.00055 19.0 3.4 26 47-72 17-42 (61)
111 2pmy_A RAS and EF-hand domain- 50.3 24 0.00083 19.9 3.9 44 22-65 20-68 (91)
112 2x48_A CAG38821; archeal virus 49.6 13 0.00046 19.0 2.4 36 25-65 18-53 (55)
113 2xi8_A Putative transcription 49.3 8 0.00027 20.3 1.5 22 46-67 17-38 (66)
114 2r1j_L Repressor protein C2; p 48.4 8.7 0.0003 20.2 1.6 22 46-67 21-42 (68)
115 2qwt_A Transcriptional regulat 47.8 11 0.00036 24.4 2.2 40 29-70 20-59 (196)
116 3bs3_A Putative DNA-binding pr 45.7 10 0.00035 20.6 1.6 22 46-67 26-47 (76)
117 2q1z_A RPOE, ECF SIGE; ECF sig 45.5 24 0.00083 22.5 3.7 26 49-74 157-182 (184)
118 2rgt_A Fusion of LIM/homeobox 45.5 0.13 4.5E-06 34.2 -7.6 30 14-43 134-163 (169)
119 1c07_A Protein (epidermal grow 45.4 37 0.0013 19.5 4.2 44 22-65 3-51 (95)
120 1zug_A Phage 434 CRO protein; 45.4 9.6 0.00033 20.3 1.5 23 46-68 19-41 (71)
121 1rzs_A Antirepressor, regulato 44.7 12 0.0004 20.1 1.7 19 46-64 13-31 (61)
122 3omt_A Uncharacterized protein 43.7 12 0.00039 20.4 1.6 22 46-67 24-45 (73)
123 2i10_A Putative TETR transcrip 42.8 24 0.00081 22.8 3.4 42 28-70 17-58 (202)
124 1adr_A P22 C2 repressor; trans 42.7 12 0.0004 20.2 1.6 23 46-68 21-43 (76)
125 2wiu_B HTH-type transcriptiona 42.3 20 0.00068 20.0 2.6 23 46-68 28-50 (88)
126 2b5a_A C.BCLI; helix-turn-heli 42.2 12 0.00041 20.3 1.6 22 46-67 26-47 (77)
127 1j9i_A GPNU1 DBD;, terminase s 42.1 20 0.00069 19.5 2.5 21 46-66 5-25 (68)
128 3kz3_A Repressor protein CI; f 41.8 12 0.00042 20.8 1.6 23 46-68 28-50 (80)
129 1r69_A Repressor protein CI; g 41.5 12 0.00042 19.7 1.5 22 46-67 17-38 (69)
130 2jml_A DNA binding domain/tran 41.4 17 0.00057 20.6 2.1 20 46-65 8-27 (81)
131 3t72_q RNA polymerase sigma fa 41.2 55 0.0019 19.4 5.7 53 22-75 19-71 (99)
132 3clo_A Transcriptional regulat 39.6 81 0.0028 21.6 5.9 47 21-73 196-242 (258)
133 2ict_A Antitoxin HIGA; helix-t 39.0 19 0.00065 20.6 2.2 23 46-68 24-46 (94)
134 3i5g_B Myosin regulatory light 38.6 70 0.0024 19.9 6.0 46 19-64 6-58 (153)
135 2lfw_A PHYR sigma-like domain; 38.6 37 0.0012 21.4 3.7 48 23-75 94-141 (157)
136 2q0o_A Probable transcriptiona 38.5 89 0.003 21.0 6.1 45 21-71 174-218 (236)
137 2fq4_A Transcriptional regulat 38.4 17 0.00058 23.2 2.1 42 29-71 19-60 (192)
138 3b7h_A Prophage LP1 protein 11 38.4 14 0.00049 20.0 1.5 23 46-68 23-45 (78)
139 1y7y_A C.AHDI; helix-turn-heli 38.3 15 0.00052 19.6 1.6 22 46-67 29-50 (74)
140 2a6c_A Helix-turn-helix motif; 38.0 17 0.00059 20.4 1.8 23 46-68 34-56 (83)
141 2kpj_A SOS-response transcript 37.8 15 0.00052 21.1 1.6 23 46-68 25-47 (94)
142 3ulq_B Transcriptional regulat 37.4 60 0.002 18.7 6.1 45 20-70 27-71 (90)
143 3fmy_A HTH-type transcriptiona 37.3 26 0.00089 19.1 2.5 40 22-68 10-49 (73)
144 2x7l_M HIV REV; nuclear export 37.3 21 0.00072 22.3 2.2 40 29-82 16-55 (115)
145 3lsg_A Two-component response 37.2 38 0.0013 19.6 3.4 24 44-67 20-43 (103)
146 2rek_A Putative TETR-family tr 36.2 11 0.00037 24.2 0.8 41 28-70 22-62 (199)
147 1t33_A Putative transcriptiona 35.7 16 0.00054 23.8 1.6 42 28-71 18-59 (224)
148 3jsj_A Putative TETR-family tr 35.1 18 0.0006 22.9 1.7 43 28-72 15-57 (190)
149 3fiw_A Putative TETR-family tr 34.8 12 0.0004 25.0 0.8 53 19-72 21-74 (211)
150 3q0w_A HTH-type transcriptiona 34.5 16 0.00055 24.3 1.5 41 30-71 52-92 (236)
151 2lv7_A Calcium-binding protein 34.0 71 0.0024 18.6 5.0 46 20-65 27-79 (100)
152 2ef8_A C.ECOT38IS, putative tr 33.9 20 0.00068 19.7 1.6 23 46-68 26-48 (84)
153 2v79_A DNA replication protein 33.3 90 0.0031 19.6 5.0 43 23-68 30-76 (135)
154 2jrt_A Uncharacterized protein 33.3 77 0.0026 18.8 4.8 43 19-65 29-71 (95)
155 3f6w_A XRE-family like protein 32.6 21 0.00072 19.7 1.6 22 46-67 30-51 (83)
156 2hku_A A putative transcriptio 32.5 24 0.00083 22.8 2.1 41 28-70 26-66 (215)
157 2pij_A Prophage PFL 6 CRO; tra 32.5 30 0.001 18.2 2.2 21 46-66 16-36 (67)
158 2pz9_A Putative regulatory pro 32.0 6.7 0.00023 26.1 -0.8 43 28-71 36-78 (226)
159 3dcf_A Transcriptional regulat 31.8 18 0.00061 23.2 1.3 42 28-70 37-78 (218)
160 3gzi_A Transcriptional regulat 31.7 40 0.0014 21.6 3.1 41 29-70 24-64 (218)
161 1x57_A Endothelial differentia 31.3 28 0.00097 19.6 2.0 23 46-68 29-51 (91)
162 3g1o_A Transcriptional regulat 31.2 24 0.00083 23.7 2.0 41 29-70 50-90 (255)
163 2hxi_A Putative transcriptiona 31.2 29 0.00099 23.6 2.4 49 21-70 27-76 (241)
164 2k9q_A Uncharacterized protein 31.1 21 0.0007 19.5 1.3 23 46-68 18-40 (77)
165 1irz_A ARR10-B; helix-turn-hel 30.9 72 0.0025 17.7 6.4 58 16-73 3-62 (64)
166 1wj7_A Hypothetical protein (R 30.8 94 0.0032 19.0 5.8 51 13-64 10-61 (104)
167 1lmb_3 Protein (lambda repress 30.8 23 0.0008 19.9 1.6 22 46-67 33-54 (92)
168 3vpr_A Transcriptional regulat 30.2 36 0.0012 21.5 2.6 43 28-71 9-51 (190)
169 3lph_A Protein REV; helix-loop 30.1 48 0.0016 18.9 2.7 37 28-78 18-54 (72)
170 1l3l_A Transcriptional activat 30.1 1.2E+02 0.0043 20.2 6.0 45 20-70 171-215 (234)
171 1r8d_A Transcription activator 29.9 37 0.0013 20.3 2.5 20 46-65 5-24 (109)
172 1uxc_A FRUR (1-57), fructose r 29.9 36 0.0012 18.6 2.2 23 46-68 3-25 (65)
173 2vz4_A Tipal, HTH-type transcr 29.6 38 0.0013 20.2 2.5 20 46-65 4-23 (108)
174 1y66_A Engrailed homeodomain; 29.4 15 0.00052 18.9 0.5 43 24-66 5-47 (52)
175 3t76_A VANU, transcriptional r 29.0 25 0.00086 20.4 1.5 22 46-67 40-61 (88)
176 3op9_A PLI0006 protein; struct 28.7 33 0.0011 20.3 2.1 23 46-68 25-47 (114)
177 3qq6_A HTH-type transcriptiona 28.6 44 0.0015 18.4 2.5 21 46-66 26-46 (78)
178 2qtq_A Transcriptional regulat 28.6 46 0.0016 21.1 2.9 43 28-71 22-64 (213)
179 3ppb_A Putative TETR family tr 28.3 36 0.0012 21.2 2.4 42 28-70 15-56 (195)
180 2ewt_A BLDD, putative DNA-bind 28.1 36 0.0012 17.9 2.0 22 46-67 24-47 (71)
181 3s8q_A R-M controller protein; 28.0 27 0.00093 19.2 1.5 22 46-67 27-48 (82)
182 2rae_A Transcriptional regulat 27.4 30 0.001 22.0 1.8 40 28-68 23-62 (207)
183 2hyt_A TETR-family transcripti 27.4 43 0.0015 21.3 2.6 42 28-70 18-59 (197)
184 2g7l_A TETR-family transcripti 27.4 23 0.00078 24.2 1.3 50 20-70 16-66 (243)
185 2v57_A TETR family transcripti 27.2 24 0.00083 22.2 1.3 36 32-70 24-59 (190)
186 3g7r_A Putative transcriptiona 26.8 57 0.0019 21.2 3.2 40 30-70 43-82 (221)
187 1aih_A HP1 integrase; DNA inte 26.6 1.2E+02 0.004 18.8 6.1 42 19-60 3-44 (170)
188 2zcm_A Biofilm operon icaabcd 26.4 35 0.0012 21.5 2.0 43 28-71 13-55 (192)
189 2cw1_A SN4M; lambda CRO fold, 26.3 38 0.0013 18.6 1.9 22 45-66 15-36 (65)
190 2xdn_A HTH-type transcriptiona 26.3 32 0.0011 22.1 1.8 41 29-70 18-58 (210)
191 2np5_A Transcriptional regulat 26.2 22 0.00076 22.9 1.0 42 28-70 15-56 (203)
192 3bru_A Regulatory protein, TET 26.2 41 0.0014 21.6 2.3 42 28-70 36-77 (222)
193 1xwr_A Regulatory protein CII; 26.1 45 0.0015 20.1 2.3 20 46-65 26-45 (97)
194 3v6g_A Probable transcriptiona 26.1 26 0.00087 23.0 1.3 42 28-70 20-61 (208)
195 1pdn_C Protein (PRD paired); p 25.9 1E+02 0.0035 17.9 6.5 40 22-66 17-56 (128)
196 2g7g_A RHA04620, putative tran 25.9 23 0.00077 23.5 1.0 40 28-70 17-56 (213)
197 2ppx_A AGR_C_3184P, uncharacte 25.8 50 0.0017 19.0 2.5 22 46-67 46-67 (99)
198 3kz9_A SMCR; transcriptional r 25.7 40 0.0014 21.2 2.2 41 29-70 24-64 (206)
199 2d6y_A Putative TETR family re 25.7 47 0.0016 21.3 2.6 42 28-70 14-55 (202)
200 3bqz_B HTH-type transcriptiona 25.6 38 0.0013 21.2 2.1 41 28-69 8-48 (194)
201 2yve_A Transcriptional regulat 25.3 44 0.0015 21.1 2.3 42 28-70 10-51 (185)
202 2pjp_A Selenocysteine-specific 25.3 68 0.0023 19.4 3.1 42 24-66 2-43 (121)
203 1l0o_C Sigma factor; bergerat 25.2 15 0.00052 24.4 0.0 26 44-69 215-240 (243)
204 3i9v_2 NADH-quinone oxidoreduc 25.1 1E+02 0.0035 20.5 4.2 35 27-61 27-61 (181)
205 3vib_A MTRR; helix-turn-helix 25.0 35 0.0012 21.9 1.8 41 29-70 17-57 (210)
206 3c3w_A Two component transcrip 24.8 1.1E+02 0.0039 19.9 4.5 45 21-71 148-192 (225)
207 3qkx_A Uncharacterized HTH-typ 24.7 47 0.0016 20.5 2.4 42 28-70 14-55 (188)
208 2wui_A MEXZ, transcriptional r 24.7 44 0.0015 21.5 2.3 41 29-70 18-58 (210)
209 3oio_A Transcriptional regulat 24.6 1.1E+02 0.0038 17.8 4.1 24 44-67 24-47 (113)
210 1qgp_A Protein (double strande 24.5 43 0.0015 18.9 2.0 34 31-64 19-52 (77)
211 2iai_A Putative transcriptiona 24.5 28 0.00094 23.0 1.3 42 28-70 36-77 (230)
212 2l49_A C protein; P2 bacteriop 24.3 28 0.00097 19.9 1.1 23 46-68 20-42 (99)
213 1q06_A Transcriptional regulat 24.2 53 0.0018 20.5 2.5 20 46-65 3-22 (135)
214 2zcx_A SCO7815, TETR-family tr 24.0 21 0.00073 23.8 0.6 43 28-71 29-71 (231)
215 2k27_A Paired box protein PAX- 23.9 1.4E+02 0.0047 18.6 6.7 46 21-66 82-134 (159)
216 3hot_A Transposable element ma 23.8 1.9E+02 0.0065 20.2 5.9 41 25-66 8-52 (345)
217 2ofy_A Putative XRE-family tra 23.8 36 0.0012 18.8 1.5 24 45-68 29-52 (86)
218 3mlf_A Transcriptional regulat 23.7 44 0.0015 19.9 2.0 23 46-68 39-61 (111)
219 3rd3_A Probable transcriptiona 23.6 20 0.00067 22.6 0.3 41 28-69 16-56 (197)
220 3dew_A Transcriptional regulat 23.6 31 0.001 21.7 1.3 42 28-70 14-55 (206)
221 3mn2_A Probable ARAC family tr 23.5 1.1E+02 0.0036 17.7 3.7 24 44-67 19-42 (108)
222 3gp4_A Transcriptional regulat 23.4 54 0.0018 20.8 2.4 20 46-65 5-24 (142)
223 3lwj_A Putative TETR-family tr 23.4 40 0.0014 21.3 1.8 42 28-70 18-59 (202)
224 3bni_A Putative TETR-family tr 23.4 39 0.0013 22.2 1.9 39 30-69 51-89 (229)
225 3kkd_A Transcriptional regulat 23.1 24 0.00082 23.3 0.7 42 28-70 41-82 (237)
226 2oer_A Probable transcriptiona 22.8 50 0.0017 21.4 2.3 42 28-70 27-71 (214)
227 3hh0_A Transcriptional regulat 22.8 58 0.002 20.7 2.5 21 46-66 7-27 (146)
228 3i5g_C Myosin catalytic light 22.6 94 0.0032 19.4 3.5 36 22-57 2-44 (159)
229 2a6h_F RNA polymerase sigma fa 22.5 1.5E+02 0.0051 22.3 5.1 49 23-72 361-409 (423)
230 3vp5_A Transcriptional regulat 22.4 54 0.0018 20.8 2.3 42 28-70 18-59 (189)
231 3ivp_A Putative transposon-rel 22.4 45 0.0015 20.1 1.9 23 46-68 28-50 (126)
232 3hta_A EBRA repressor; TETR fa 22.0 23 0.0008 23.2 0.5 44 28-72 34-77 (217)
233 3knw_A Putative transcriptiona 22.0 44 0.0015 21.2 1.8 42 28-70 20-61 (212)
234 3o9x_A Uncharacterized HTH-typ 21.8 53 0.0018 20.0 2.1 23 46-68 87-109 (133)
235 3gpv_A Transcriptional regulat 21.6 63 0.0022 20.5 2.5 20 46-65 19-38 (148)
236 3c2b_A Transcriptional regulat 21.5 42 0.0014 21.6 1.7 43 28-71 21-63 (221)
237 4aci_A HTH-type transcriptiona 21.4 51 0.0018 20.6 2.1 41 29-70 21-61 (191)
238 1w8x_P Protein P16, protein S, 21.2 34 0.0012 20.4 1.0 12 59-70 18-29 (117)
239 3oou_A LIN2118 protein; protei 21.1 80 0.0027 18.3 2.8 24 44-67 22-45 (108)
240 2eh3_A Transcriptional regulat 21.1 47 0.0016 20.7 1.8 41 29-70 9-49 (179)
241 2opo_A Polcalcin CHE A 3; calc 21.1 1.1E+02 0.0037 16.4 4.4 44 22-65 4-53 (86)
242 2eby_A Putative HTH-type trans 21.0 44 0.0015 19.6 1.6 23 46-68 27-49 (113)
243 2o7t_A Transcriptional regulat 21.0 39 0.0013 21.5 1.4 41 29-70 15-55 (199)
244 3bhq_A Transcriptional regulat 20.9 65 0.0022 20.6 2.5 41 29-70 19-59 (211)
245 3lhq_A Acrab operon repressor 20.9 47 0.0016 21.0 1.8 42 28-70 20-61 (220)
246 1pb6_A Hypothetical transcript 20.8 49 0.0017 21.0 1.9 41 29-70 25-65 (212)
247 1vi0_A Transcriptional regulat 20.8 31 0.0011 22.3 0.9 42 28-70 14-55 (206)
248 2qib_A TETR-family transcripti 20.7 37 0.0013 22.4 1.3 43 28-71 19-61 (231)
249 2ibd_A Possible transcriptiona 20.7 46 0.0016 21.2 1.7 40 30-70 22-61 (204)
250 3lfp_A CSP231I C protein; tran 20.6 61 0.0021 18.5 2.1 22 46-67 17-42 (98)
251 1dtl_A Cardiac troponin C; hel 20.6 1.5E+02 0.005 17.7 5.5 45 21-65 10-62 (161)
252 2jj7_A Hemolysin II regulatory 20.6 53 0.0018 20.4 2.0 37 33-70 18-54 (186)
253 3cec_A Putative antidote prote 20.6 46 0.0016 19.3 1.6 22 46-67 34-55 (104)
254 2ao9_A Phage protein; structur 20.6 99 0.0034 20.2 3.3 46 21-66 22-71 (155)
255 3eus_A DNA-binding protein; st 20.6 48 0.0017 18.5 1.6 23 46-68 30-52 (86)
256 3anp_C Transcriptional repress 20.6 42 0.0014 21.4 1.5 42 28-70 15-56 (204)
257 1l9z_H Sigma factor SIGA; heli 20.6 2.1E+02 0.0072 21.8 5.6 49 23-72 376-424 (438)
258 1qbj_A Protein (double-strande 20.5 62 0.0021 18.5 2.1 33 33-65 17-49 (81)
259 1b0n_A Protein (SINR protein); 20.5 46 0.0016 19.3 1.6 21 46-66 17-37 (111)
260 3f1b_A TETR-like transcription 20.0 49 0.0017 20.7 1.7 41 29-70 21-61 (203)
No 1
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=1.1e-21 Score=119.75 Aligned_cols=67 Identities=34% Similarity=0.602 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
.+++.++.|+.|+..|+.+|+.+|..++||+..++..||..++|++.+|++||||||+++|+.....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 3567788899999999999999999999999999999999999999999999999999999987653
No 2
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=115.35 Aligned_cols=65 Identities=35% Similarity=0.638 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
.++..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34567788999999999999999999999999999999999999999999999999999998764
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=1.6e-21 Score=116.13 Aligned_cols=65 Identities=35% Similarity=0.646 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
..+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 45677888999999999999999999999999999999999999999999999999999998754
No 4
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=118.91 Aligned_cols=66 Identities=33% Similarity=0.520 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
.+..++.|+.|+.+|+.+|+.+|..++||+..++..||..+||++.+|++||||||+++|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999986543
No 5
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=115.42 Aligned_cols=67 Identities=33% Similarity=0.476 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 11 DKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 11 ~~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
...++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 3456778889999999999999999999999999999999999999999999999999999987543
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=9.8e-22 Score=119.94 Aligned_cols=65 Identities=37% Similarity=0.630 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
.++..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 35677888999999999999999999999999999999999999999999999999999999864
No 7
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=115.10 Aligned_cols=66 Identities=33% Similarity=0.490 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 3 SGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 345677889999999999999999999999999999999999999999999999999999987643
No 8
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=7.8e-21 Score=113.17 Aligned_cols=64 Identities=38% Similarity=0.609 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
....++.|++|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 4466778899999999999999999999999999999999999999999999999999998765
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=116.21 Aligned_cols=65 Identities=42% Similarity=0.689 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
...+.++.|+.|+..|+.+|+..|..++||+..++..||..|+|++.+|++||||||+++|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 44566788999999999999999999999999999999999999999999999999999998754
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.85 E-value=4.2e-21 Score=112.15 Aligned_cols=61 Identities=51% Similarity=0.746 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 15 KEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 15 ~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4677899999999999999999999999999999999999999999999999999999864
No 11
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=114.90 Aligned_cols=65 Identities=48% Similarity=0.765 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
.++..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 45677888999999999999999999999999999999999999999999999999999988654
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=6.7e-21 Score=117.13 Aligned_cols=66 Identities=39% Similarity=0.582 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 11 DKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 11 ~~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
....+.++.|+.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 345677888999999999999999999999999999999999999999999999999999998754
No 13
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.85 E-value=8.9e-21 Score=114.88 Aligned_cols=66 Identities=36% Similarity=0.612 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 11 DKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 11 ~~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
+...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 345567788999999999999999999999999999999999999999999999999999998754
No 14
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=116.42 Aligned_cols=65 Identities=31% Similarity=0.528 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
...+.++.|+.|+.+|+.+|+..|..++||+..++..||..|||++.+|++||||||+++|+...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 45667888999999999999999999999999999999999999999999999999999998764
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.85 E-value=3.3e-21 Score=112.26 Aligned_cols=61 Identities=41% Similarity=0.629 Sum_probs=53.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 14 SKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 14 ~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 3567889999999999999999999999999999999999999999999999999999985
No 16
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.85 E-value=8e-21 Score=114.33 Aligned_cols=68 Identities=35% Similarity=0.587 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 11 DKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 11 ~~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
...++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.....
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~ 71 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFG 71 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhh
Confidence 34567788899999999999999999999999999999999999999999999999999999986653
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.84 E-value=1.1e-20 Score=114.40 Aligned_cols=66 Identities=41% Similarity=0.604 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 11 DKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 11 ~~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
...+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 445677888999999999999999999999999999999999999999999999999999998754
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.84 E-value=9.9e-21 Score=109.86 Aligned_cols=58 Identities=86% Similarity=1.248 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 16 EKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678999999999999999999999999999999999999999999999999999986
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=1.7e-20 Score=107.78 Aligned_cols=57 Identities=46% Similarity=0.828 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 17 rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 20
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.83 E-value=6e-21 Score=113.06 Aligned_cols=65 Identities=37% Similarity=0.644 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 14 SKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 14 ~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
|+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.....
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 35678899999999999999999999999999999999999999999999999999999987643
No 21
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.83 E-value=1.5e-20 Score=111.37 Aligned_cols=64 Identities=52% Similarity=0.736 Sum_probs=59.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCCC
Q psy4625 16 EKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQKN 79 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~~ 79 (120)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 65 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKG 65 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccC
Confidence 4678999999999999999999999999999999999999999999999999999999876543
No 22
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.83 E-value=5e-20 Score=115.34 Aligned_cols=68 Identities=35% Similarity=0.691 Sum_probs=62.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCCC
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQKN 79 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~~ 79 (120)
...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+......
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999876543
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.7e-20 Score=111.08 Aligned_cols=63 Identities=41% Similarity=0.722 Sum_probs=59.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 16 EKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467899999999999999999999999999999999999999999999999999999986543
No 24
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.83 E-value=1.5e-20 Score=114.76 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTE----NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~----~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
..++.++.|+.|+.+|+..|+.+|.. ++||+..++..||..|||++.+|++||||||+|+++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 44567888999999999999999999 999999999999999999999999999999999774
No 25
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.83 E-value=1.5e-20 Score=116.58 Aligned_cols=66 Identities=50% Similarity=0.725 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 10 KDKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 10 ~~~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
....+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 22 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 22 VNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ---------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345667788999999999999999999999999999999999999999999999999999999864
No 26
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.83 E-value=3.7e-20 Score=109.68 Aligned_cols=63 Identities=37% Similarity=0.665 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 16 EKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 467899999999999999999999999999999999999999999999999999999987654
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.83 E-value=2.5e-20 Score=111.84 Aligned_cols=64 Identities=31% Similarity=0.631 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 14 SKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 14 ~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 3567789999999999999999999999999999999999999999999999999999988654
No 28
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=114.68 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhC----CCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTEN----RYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~----~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..++.++.|+.|+.+|+.+|+.+|..+ +||+..++..||..+||++.+|++||||||+++|+..
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 456778889999999999999999999 9999999999999999999999999999999999864
No 29
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.83 E-value=1.6e-20 Score=110.60 Aligned_cols=62 Identities=35% Similarity=0.500 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 15 KEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 15 ~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 35778999999999999999999999999999999999999999999999999999988653
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.83 E-value=3.6e-20 Score=113.15 Aligned_cols=64 Identities=41% Similarity=0.716 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3556788899999999999999999999999999999999999999999999999999999875
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.82 E-value=3.5e-20 Score=107.17 Aligned_cols=58 Identities=50% Similarity=0.813 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 17 rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||+|+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5779999999999999999999999999999999999999999999999999999874
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.82 E-value=2.5e-20 Score=113.96 Aligned_cols=64 Identities=47% Similarity=0.722 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..+..++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4456778899999999999999999999999999999999999999999999999999999864
No 33
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.82 E-value=2.1e-20 Score=108.43 Aligned_cols=60 Identities=25% Similarity=0.526 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
.++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||+|||+++|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356778899999999999999999999999999999999999999999999999999875
No 34
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=109.06 Aligned_cols=62 Identities=40% Similarity=0.652 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 16 EKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 36789999999999999999999999999999999999999999999999999999987654
No 35
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=3e-20 Score=116.75 Aligned_cols=66 Identities=29% Similarity=0.511 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------CChhhHHHHHHHHHhHHHHhhc
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELG---------------LNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~---------------l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
...+.++.|+.|+..|+.+|+..|..++||+..++..||..|+ |++.+|++||||||+++|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3557788999999999999999999999999999999999999 9999999999999999999876
Q ss_pred C
Q psy4625 77 Q 77 (120)
Q Consensus 77 ~ 77 (120)
.
T Consensus 83 ~ 83 (95)
T 2cuf_A 83 I 83 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 36
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.82 E-value=5.8e-20 Score=105.32 Aligned_cols=57 Identities=44% Similarity=0.761 Sum_probs=54.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 16 EKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 456789999999999999999999999999999999999999999999999999875
No 37
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=6e-20 Score=115.77 Aligned_cols=66 Identities=45% Similarity=0.673 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
+.+..++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+++|+....
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 446778889999999999999999999999999999999999999999999999999999998654
No 38
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=7.6e-20 Score=110.18 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 19 PRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 19 ~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.|..|+.+|+.+|+..|..++||+..++..||..+||++.+|++||||+|+++|+....
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999988654
No 39
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.9e-19 Score=107.95 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.+++.++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++++....
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 35567788999999999999999987 9999999999999999999999999999999999987643
No 40
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.81 E-value=5.8e-20 Score=106.24 Aligned_cols=57 Identities=40% Similarity=0.686 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 19 PRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 19 ~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 578999999999999999999999999999999999999999999999999999864
No 41
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=1.5e-19 Score=108.14 Aligned_cols=61 Identities=23% Similarity=0.412 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 17 KRPRTAFSGEQLSRLKVEFTE-NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 17 rr~R~~~~~~q~~~L~~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.+.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 356899999999999999996 9999999999999999999999999999999999998743
No 42
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=3.8e-20 Score=112.92 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTE-----NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
...+.+|.||.|+.+|+..|+ .|.. ++||+..++..||..++|++.+|++||||||+++++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 455678889999999999999 7999 999999999999999999999999999999999875
No 43
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.4e-20 Score=110.32 Aligned_cols=63 Identities=25% Similarity=0.433 Sum_probs=58.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 15 KEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 15 ~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.....|++|+.+|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 444568999999999999999999999999999999999999999999999999999987654
No 44
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=108.94 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=56.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 18 RPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 18 r~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
+.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456779999999999999999999999999999999999999999999999999998654
No 45
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=1.9e-19 Score=107.94 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 17 KRPRTAFSGEQLSRLKVEFTE-NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 17 rr~R~~~~~~q~~~L~~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 456899999999999999995 9999999999999999999999999999999999998753
No 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=103.48 Aligned_cols=54 Identities=39% Similarity=0.704 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
|.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 47
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.9e-19 Score=105.37 Aligned_cols=61 Identities=28% Similarity=0.347 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 11 DKRSKEKRPRTAFSGEQLSRLKVEFTE-NRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 11 ~~~~~~rr~R~~~~~~q~~~L~~~F~~-~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
.+.+.++|.||.|+.+|+.+|+.+|+. ++||+...++.||.++||++++|++||||+|.-.
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 345678899999999999999999999 9999999999999999999999999999999753
No 48
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=114.10 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 11 DKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 11 ~~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
......++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34555667899999999999999999999999999999999999999999999999999999875
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=107.81 Aligned_cols=62 Identities=26% Similarity=0.433 Sum_probs=58.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 16 EKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 45678999999999999999999999999999999999999999999999999999987654
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.80 E-value=3.5e-19 Score=106.75 Aligned_cols=63 Identities=33% Similarity=0.557 Sum_probs=59.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCCC
Q psy4625 17 KRPRTAFSGEQLSRLKVEF---TENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQKN 79 (120)
Q Consensus 17 rr~R~~~~~~q~~~L~~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~~ 79 (120)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+......
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 6778999999999999999 89999999999999999999999999999999999998876544
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.79 E-value=1.8e-19 Score=111.41 Aligned_cols=62 Identities=34% Similarity=0.562 Sum_probs=57.8
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 17 KRPRTAFSGEQLSRLKVEF---TENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 17 rr~R~~~~~~q~~~L~~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 5778999999999999999 8999999999999999999999999999999999999987554
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=109.00 Aligned_cols=66 Identities=26% Similarity=0.347 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
..+.++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|.++++.....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 4567778999999999999999987 59999999999999999999999999999999999876543
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=2.3e-19 Score=104.93 Aligned_cols=59 Identities=29% Similarity=0.455 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 15 KEKRPRTAFSGEQLSRLKVEF---TENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 15 ~~rr~R~~~~~~q~~~L~~~F---~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
..++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 356778999999999999999 89999999999999999999999999999999999875
No 54
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.7e-18 Score=107.45 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCCC
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQKN 79 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~~ 79 (120)
.|+.+|+.+|+..|..++||+..++..||..|||++.+|++||||||+++++......
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999998765433
No 55
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=1.3e-18 Score=100.52 Aligned_cols=55 Identities=31% Similarity=0.475 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 20 RTAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 9999999999999999999999999999999999864
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=109.40 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh---------------------CCChhhHHHHHHHHHhHH
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANEL---------------------GLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l---------------------~l~~~~V~~WFqNrR~k~ 71 (120)
.++.++.|+.|++.|+.+|+..|..++||+..+++.||..| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678889999999999999999999999999999999999 799999999999999999
Q ss_pred HHhhc
Q psy4625 72 KKASG 76 (120)
Q Consensus 72 kk~~~ 76 (120)
++...
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 98754
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=6.9e-19 Score=105.33 Aligned_cols=60 Identities=22% Similarity=0.379 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 16 EKRPRTAFSGEQLSRLKVEF-TENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~L~~~F-~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..+.+.+++..|+.+|+..| ..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34556678888999999999 9999999999999999999999999999999999999764
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=116.30 Aligned_cols=62 Identities=29% Similarity=0.589 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
..+++++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 44677888999999999999999999999999999999999999999999999999999986
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.76 E-value=2.5e-18 Score=106.31 Aligned_cols=59 Identities=31% Similarity=0.448 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 14 SKEKRPRTAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 14 ~~~rr~R~~~~~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
..+++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|||+++|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 455667899999999999999999 99999999999999999999999999999999987
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.75 E-value=3e-18 Score=100.16 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
-+..|+..|+..|..++||+..++..||..+||++.+|++||||||.++|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4689999999999999999999999999999999999999999999999975
No 61
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.75 E-value=1.5e-18 Score=118.82 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45677889999999999999999999999999999999999999999999999999999987653
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.75 E-value=1.9e-18 Score=117.84 Aligned_cols=62 Identities=27% Similarity=0.469 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
..+.++.|+.|+..|+.+|+.+|..++||+..++..||..+||++.+|++||||||+++||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35678889999999999999999999999999999999999999999999999999999874
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.75 E-value=2e-18 Score=116.09 Aligned_cols=63 Identities=24% Similarity=0.458 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
..++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345677889999999999999999999999999999999999999999999999999999874
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=101.82 Aligned_cols=58 Identities=38% Similarity=0.637 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
-..++..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 3568999999999999999999999999999999999999999999999999987654
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.75 E-value=4e-18 Score=104.53 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhc
Q psy4625 18 RPRTAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76 (120)
Q Consensus 18 r~R~~~~~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~ 76 (120)
+.|++|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 45667999999999999999 999999999999999999999999999999999998643
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=103.87 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=54.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
+..|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++++.....
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 34599999999999999999999999999999999999999999999999999876543
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.73 E-value=3.6e-18 Score=107.94 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH------------------hC---CChhhHHHHHHHHHhHH
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANE------------------LG---LNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~------------------l~---l~~~~V~~WFqNrR~k~ 71 (120)
..+.++.|+.|+..|+.+|+..|..++||+..+++.||.. +| |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4467788999999999999999999999999999999999 88 99999999999999988
Q ss_pred HHhhc
Q psy4625 72 KKASG 76 (120)
Q Consensus 72 kk~~~ 76 (120)
++...
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 76654
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=97.81 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
..+...|+.+|+.+|..++||+..++..||..+||++.+|++||||||+|.++.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 345689999999999999999999999999999999999999999999987654
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.72 E-value=8.4e-18 Score=114.08 Aligned_cols=61 Identities=28% Similarity=0.485 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 14 SKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 14 ~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5677889999999999999999999999999999999999999999999999999999874
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=7.6e-18 Score=98.33 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=46.7
Q ss_pred HHHHHHHHHHH-HhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 25 GEQLSRLKVEF-TENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 25 ~~q~~~L~~~F-~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..++.+||.+| ..++||+..++..||..|||+++||++||||||+++|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 34799999999 5799999999999999999999999999999999988653
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.71 E-value=1.5e-17 Score=113.65 Aligned_cols=66 Identities=23% Similarity=0.365 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 12 ~~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
...+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 445678889999999999999999999999999999999999999999999999999998876543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=1.5e-16 Score=93.87 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcC
Q psy4625 22 AFSGEQLSRLKVEFT---ENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~---~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~ 77 (120)
.|+.+++.+|+..|. .++||+..++..||..+||+..+|++||+|+|.++++....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 689999999999999 99999999999999999999999999999999999986543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.60 E-value=4.4e-16 Score=108.93 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CChhhHHHHHHHHHhHH
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELG---------------------LNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~---------------------l~~~~V~~WFqNrR~k~ 71 (120)
..+.||.|+.|+..|+.+|+..|..++||+..+++.||..|+ |++.+|++||||||++.
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 356788999999999999999999999999999999999999 99999999999999986
Q ss_pred HH
Q psy4625 72 KK 73 (120)
Q Consensus 72 kk 73 (120)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=88.59 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 25 GEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 25 ~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
.+|+.+|+.+|..+++|+..++..||..+||..++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=102.02 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---------------------CChhhHHHHHHHHHhHH
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELG---------------------LNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~---------------------l~~~~V~~WFqNrR~k~ 71 (120)
..+.||.|+.|++.|+.+|+..|..++||+..+++.||..|+ |++.+|++||+|||+..
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 456788899999999999999999999999999999999987 89999999999999863
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=87.47 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 21 TAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~---~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..|+.++..+|+..|.. ++||+..++..||..+||++.||.+||+|+|.+.++..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 35899999999999987 99999999999999999999999999999999998764
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.39 E-value=2.9e-13 Score=102.47 Aligned_cols=54 Identities=28% Similarity=0.529 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 19 PRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 19 ~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
-++.++..|+..|+..|+.++||+..++..||..+||+++||++||||||.|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 356789999999999999999999999999999999999999999999999865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.64 E-value=2.9e-10 Score=58.89 Aligned_cols=20 Identities=60% Similarity=0.823 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhHHHHhhcC
Q psy4625 58 AQIKIWFQNKRAKIKKASGQ 77 (120)
Q Consensus 58 ~~V~~WFqNrR~k~kk~~~~ 77 (120)
+||+|||||||+|+|+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999998764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.16 E-value=0.0008 Score=39.12 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 24 SGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 24 ~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
++.-..+|+.+|.............|+.+.+|+..+|+-||-.
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3444689999999999999999999999999999999999964
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.14 E-value=1 Score=24.30 Aligned_cols=46 Identities=15% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
+..|+.++...+...+... .........+|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4568888866665555433 221223568899999999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=87.18 E-value=3.2 Score=25.66 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 19 PRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 19 ~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
.|..++.++...+...+..++.... ..+|..+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 4678999998777777755555543 357889999999999999876654
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=84.73 E-value=3.4 Score=24.12 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
++..+..+|...|-... ....+|..+|++...|+.+...-+.+.++..
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56667777766553332 3567899999999999999988777776653
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=83.89 E-value=4.6 Score=23.45 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 18 RPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 18 r~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
+.+..|+.++.......+.. .. ....+|..+|++...|..|...
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34567888886555555543 22 2557899999999999999853
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.08 E-value=3.9 Score=20.09 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
.++..+...+...+... + ....+|..+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHh
Confidence 46677665555555433 2 255789999999999999985
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=79.97 E-value=4 Score=22.08 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
.+++.+..+|...|-... ....+|..+|++...|..+...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467888888888764432 346789999999999999998777666554
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=78.95 E-value=6.4 Score=23.05 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 20 RTAFSGEQLSRLKVEFTEN-RYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~-~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
|..|+.++.......+... .. ....+|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568888766555555332 22 356789999999999999985
No 87
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=76.49 E-value=5.7 Score=25.38 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCCCHHHHHHHHH-Hh--CCChhhHHHHHHHHH
Q psy4625 17 KRPRTAFSGEQLSRLKVEF-TENRYLTERRRQELAN-EL--GLNEAQIKIWFQNKR 68 (120)
Q Consensus 17 rr~R~~~~~~q~~~L~~~F-~~~~~p~~~~~~~La~-~l--~l~~~~V~~WFqNrR 68 (120)
++.|.+++-+|...+..++ ..++..+..+...+|. .+ +++...|..|..++-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 4678899999999999999 6788777766666543 66 788889999997643
No 88
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=75.84 E-value=7.9 Score=22.78 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
.++..+..+|..++. .+ ...++|..+|++...|+.+...-+.+.+...
T Consensus 27 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 478888888888532 22 2367899999999999999987776665543
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=72.35 E-value=5.6 Score=21.71 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
.+++.+..+|...|-...+-. ....++|..+|++...|+.+...-+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888889988884322111 234668999999999999988766666554
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=71.47 E-value=12 Score=23.32 Aligned_cols=47 Identities=23% Similarity=0.102 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
+++.+..+|. .|- ......++|..+|++...|+.+...-+.+.++..
T Consensus 110 L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 110 FSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp SCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455555555 332 2224567899999999999999987777766553
No 91
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=71.25 E-value=3.4 Score=20.70 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
++.++...+...+... . ....+|..+|++...|..|+..
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHH
Confidence 4444544444445433 2 3567899999999999999853
No 92
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=70.53 E-value=16 Score=22.41 Aligned_cols=49 Identities=10% Similarity=0.273 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
.+++.+..++...|.... ....+|..+|++...|+.|...-+.+.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 467778888877765442 3467899999999999999988887776653
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=67.38 E-value=17 Score=21.68 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
...++..+..+|...+.-- ...++|..++++...|+.+..+-+.+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3568999999997765322 23778999999999999988754444
No 94
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=66.81 E-value=2.2 Score=28.12 Aligned_cols=43 Identities=5% Similarity=0.020 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+......|....|-. .....||...|++...+..+|.++-.-.
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 344445577777654 5577889999999999999999875543
No 95
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=66.40 E-value=18 Score=21.43 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHH-HhC-CCCCH-HHHHHHHHHhCCChhhHHHHHH
Q psy4625 21 TAFSGEQLSRLKVEF-TEN-RYLTE-RRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F-~~~-~~p~~-~~~~~La~~l~l~~~~V~~WFq 65 (120)
..|+.++.......+ ... .+.+. .....+|..+|++...|..|..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 468888865444443 322 13332 4567789999999999999985
No 96
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=65.59 E-value=10 Score=25.24 Aligned_cols=47 Identities=11% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
+++.+..+|...|-.. ....++|..+|++...|+.+...-+.+.++.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4566666666665322 2356789999999999999998777777654
No 97
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=64.05 E-value=18 Score=20.69 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
.+++.+..+|...|-.... .......+|..+|++...|+.+...-+.+.+..
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3678888888888753210 012355678999999999999987766666544
No 98
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=63.62 E-value=18 Score=20.51 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
-..++..+..+|..++ .. ....++|..+|++...|+.+...-+.+.+
T Consensus 19 ~~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 19 VNQLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGGSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3458899999988842 22 24567899999999999998876555543
No 99
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=63.38 E-value=23 Score=21.59 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
+++.+..+|...|-... ...++|..+|++...|+.+...-+.+.+...
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56677777776654332 3567899999999999999988887777654
No 100
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=62.29 E-value=4.7 Score=25.99 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|....| . .....||...|++...|..+|.++-.-
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 4555566888888 5 789999999999999999999887543
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.71 E-value=18 Score=19.83 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
.+++.+..+|...|-.... ......++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788899999888853110 0123457899999999999999887776666
No 102
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=61.33 E-value=8.1 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqN 66 (120)
...||..||++..-|..|...
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999865
No 103
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=61.09 E-value=17 Score=23.37 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=25.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 46 RQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
..++|..+|++...|+.+...-+.+.++..
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999988888777654
No 104
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=60.94 E-value=20 Score=20.48 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 22 AFSGEQLSRLKVEFTE-----NRYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
.++.++...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888889998864 4467788888877888998888777764
No 105
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=60.93 E-value=18 Score=19.53 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
-..+++.+..+|..+ ...+ ...++|..+|++...|..++..-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~--~~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELL--VQDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHH--TTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH--HcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 345888999998874 2222 3467899999999999998876555443
No 106
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=59.90 E-value=19 Score=19.72 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
+++.+..+|..++ ..+ ...++|..+|++...|+.+...-+.+.+
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4666777776632 222 3457899999999999998876555544
No 107
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=57.87 E-value=7.6 Score=21.67 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46789999999999999998754
No 108
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=57.57 E-value=29 Score=21.04 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
..++.++...+...+... . ....+|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457787776666666543 2 2456789999999999999964
No 109
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=56.79 E-value=15 Score=21.15 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
.++..+..+|..++. .+ ...++|..+|++...|+.+...-+.+.+
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 478888888877432 22 2346789999999999998876665544
No 110
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=55.08 E-value=16 Score=19.02 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 47 QELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 47 ~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
.++|..+|++...|+.+...-+.+.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 57899999999999998876555543
No 111
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=50.30 E-value=24 Score=19.86 Aligned_cols=44 Identities=30% Similarity=0.401 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 22 AFSGEQLSRLKVEFTE-----NRYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
.++..+...|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 20 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 20 DGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4677888888888854 4578888888888889998888888885
No 112
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=49.55 E-value=13 Score=19.00 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 25 GEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 25 ~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
..+...+...+... + ....+|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 45544444444332 2 355789999999999999874
No 113
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=49.29 E-value=8 Score=20.25 Aligned_cols=22 Identities=32% Similarity=0.271 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998654
No 114
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=48.42 E-value=8.7 Score=20.25 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|...+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHcCC
Confidence 5678999999999999998654
No 115
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=47.80 E-value=11 Score=24.41 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..-...|....| . .....||...|++...|..+|.++-.-
T Consensus 20 ~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 20 EVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 334455888887 5 688899999999999999999987543
No 116
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=45.73 E-value=10 Score=20.55 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~ 47 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998754
No 117
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.53 E-value=24 Score=22.48 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=20.2
Q ss_pred HHHHhCCChhhHHHHHHHHHhHHHHh
Q psy4625 49 LANELGLNEAQIKIWFQNKRAKIKKA 74 (120)
Q Consensus 49 La~~l~l~~~~V~~WFqNrR~k~kk~ 74 (120)
+|..+|++...|+.+...-+.+.|+.
T Consensus 157 IA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 157 LAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp STTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46677899999999998777776653
No 118
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.46 E-value=0.13 Score=34.17 Aligned_cols=30 Identities=13% Similarity=0.010 Sum_probs=21.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCH
Q psy4625 14 SKEKRPRTAFSGEQLSRLKVEFTENRYLTE 43 (120)
Q Consensus 14 ~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~ 43 (120)
...++.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788899999999999999999998864
No 119
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=45.42 E-value=37 Score=19.46 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 22 AFSGEQLSRLKVEFTE-----NRYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
.++.++...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3566778888888853 4578888888887888999888887775
No 120
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=45.39 E-value=9.6 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999987643
No 121
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=44.71 E-value=12 Score=20.14 Aligned_cols=19 Identities=26% Similarity=0.691 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChhhHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWF 64 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WF 64 (120)
...||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 122
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=43.67 E-value=12 Score=20.37 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4578999999999999999764
No 123
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=42.76 E-value=24 Score=22.82 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 17 l~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L 58 (202)
T 2i10_A 17 LQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRDL 58 (202)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHHH
Confidence 445556688888765 457778999999999999999887544
No 124
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=42.74 E-value=12 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.471 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|...++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987643
No 125
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=42.27 E-value=20 Score=19.96 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999998743
No 126
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=42.21 E-value=12 Score=20.29 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|...+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 4678999999999999998654
No 127
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=42.14 E-value=20 Score=19.52 Aligned_cols=21 Identities=24% Similarity=0.533 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChhhHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqN 66 (120)
..++|..||++...|..|-..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 456899999999999999854
No 128
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=41.83 E-value=12 Score=20.75 Aligned_cols=23 Identities=13% Similarity=0.442 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 45789999999999999997654
No 129
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=41.54 E-value=12 Score=19.69 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~ 38 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGK 38 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998654
No 130
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=41.41 E-value=17 Score=20.64 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChhhHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFq 65 (120)
..++|..+|++...|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999954
No 131
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=41.22 E-value=55 Score=19.45 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
.+++.+..++...|-.+.. ......++|..+|++...|+.....-..+.|...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3667778888887754321 1134567899999999999998877766666553
No 132
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.63 E-value=81 Score=21.61 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
..+++.+..+|...+ ..+ .-.++|..+|++...|+....+-+.+.+.
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 358888888888754 222 35668999999999999988766666543
No 133
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=39.00 E-value=19 Score=20.58 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56789999999999999997653
No 134
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=38.65 E-value=70 Score=19.90 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCh--hhHHHHH
Q psy4625 19 PRTAFSGEQLSRLKVEFTE-----NRYLTERRRQELANELGLNE--AQIKIWF 64 (120)
Q Consensus 19 ~R~~~~~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l~~--~~V~~WF 64 (120)
.+..++.+|+..|...|.. +.+.+..+...+...+|+.+ ..+...+
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 3567999999999999964 55889999888888888654 3344433
No 135
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=38.62 E-value=37 Score=21.41 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhh
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~ 75 (120)
+++.+..+|...| .......++|..+|++...|+.+...-|.+.++..
T Consensus 94 Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 94 MTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp SCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5556666654332 22234677899999999999999987777777654
No 136
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=38.53 E-value=89 Score=21.01 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
..+++.+..+|.-.+. .+ .-.++|..+|+++..|+....+-+.|.
T Consensus 174 ~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 174 QMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4588888888866432 21 246679999999999999887655553
No 137
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=38.39 E-value=17 Score=23.22 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
......|....|-. .....||...|++...|..+|.++-.-.
T Consensus 19 ~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 19 SASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 34444477777655 4577789999999999999998875543
No 138
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=38.37 E-value=14 Score=20.04 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999987654
No 139
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=38.32 E-value=15 Score=19.63 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 5668999999999999998654
No 140
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=38.04 E-value=17 Score=20.37 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 141
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=37.76 E-value=15 Score=21.10 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|...++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46789999999999999997653
No 142
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=37.44 E-value=60 Score=18.73 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
...++..+..+|...+ ..+ ...++|..+|++...|+....+=..|
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4468999999998776 222 35678999999999999877654433
No 143
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=37.33 E-value=26 Score=19.15 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHH
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR 68 (120)
.++...+..+...... ....||..+|++...|..|-..++
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 5677777777654322 246789999999999999987643
No 144
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=37.27 E-value=21 Score=22.28 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCCChhh
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQKNPLA 82 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~~~~~ 82 (120)
.++.-.|+.|+||...-. ++- -.|||.+|+..+.+-...+
T Consensus 16 RiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQrQI~~is 55 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQRQIHSIS 55 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHHHHHHHH
Confidence 445556899999985411 111 1588999988876544443
No 145
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=37.17 E-value=38 Score=19.58 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHH
Q psy4625 44 RRRQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 44 ~~~~~La~~l~l~~~~V~~WFqNr 67 (120)
.....||..+||++..+...|+..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456778999999998888888644
No 146
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=36.24 E-value=11 Score=24.24 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....| . .....||...|++...|...|.++-.-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHH
Confidence 3444555888888 5 688899999999999999999887433
No 147
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=35.72 E-value=16 Score=23.81 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+..-...|....|- .....||...|++...|..+|.++-.-.
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~ 59 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLY 59 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHH
Confidence 33444457777776 6788899999999999999999875443
No 148
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=35.15 E-value=18 Score=22.91 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
+..-...|....|- .....||...|++...|...|.++-.-..
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~ 57 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLA 57 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 45555668888877 67888999999999999999998755433
No 149
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=34.82 E-value=12 Score=25.00 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCCCCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 19 PRTAFSGEQ-LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 19 ~R~~~~~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
.|...+.+. +......|....|-. .....||..+|++...|..+|.++-.-..
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 344455544 455556677777543 44777899999999999999988765543
No 150
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=34.53 E-value=16 Score=24.26 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 30 RLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 30 ~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
.....|....|-. .....||...|++...|..+|.++-.-.
T Consensus 52 aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 52 TAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp HHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHHHH
Confidence 3344477776544 4567789999999999999999885443
No 151
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=34.00 E-value=71 Score=18.57 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCC--ChhhHHHHHH
Q psy4625 20 RTAFSGEQLSRLKVEFTE-----NRYLTERRRQELANELGL--NEAQIKIWFQ 65 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~l--~~~~V~~WFq 65 (120)
...++.++...|...|.. +.+.+..+...+...+|. +...|..+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 346888999999999864 458999998888888874 6678888885
No 152
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=33.90 E-value=20 Score=19.71 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46789999999999999987643
No 153
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=33.29 E-value=90 Score=19.57 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCChhhHHHHHHHHH
Q psy4625 23 FSGEQLSRLKVEFTE----NRYLTERRRQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~----~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR 68 (120)
++..++.+|...+.. ..+|+. ..||..+|++...|....++=-
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHHHH
Confidence 456666666666553 456665 4689999999999999887543
No 154
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=33.28 E-value=77 Score=18.78 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 19 PRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 19 ~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
.+.+|+.++...+...+.... ....++|...+|+..+|..|-.
T Consensus 29 ~~rrWs~~~Kl~VV~~~~~g~----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 29 DTRRWVASRKAAVVKAVIHGL----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp SCCCCCHHHHHHHHHHHHTTS----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHcCC----CCHHHHHHHhCCCHHHHHHHHH
Confidence 344588877554444444433 2345678999999999999975
No 155
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=32.59 E-value=21 Score=19.69 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|-.++
T Consensus 30 q~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4578999999999999998764
No 156
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.54 E-value=24 Score=22.82 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|.... .......||...|++...|..+|.++..-
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L 66 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERL 66 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 344445577766 66778889999999999999999987544
No 157
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=32.47 E-value=30 Score=18.22 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.7
Q ss_pred HHHHHHHhCCChhhHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqN 66 (120)
...+|..+|++...|..|..+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999999854
No 158
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=31.98 E-value=6.7 Score=26.06 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+..-...|....|- ......||...|++...|..+|.++-.-.
T Consensus 36 l~aA~~lf~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~sK~~L~ 78 (226)
T 2pz9_A 36 VAAAKEEFARHGIA-GARVDRIAKQARTSKERVYAYFRSKEALY 78 (226)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHTTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCcc-cCcHHHHHHHHCCChHHHHHHcCCHHHHH
Confidence 44445556666543 24577789999999999999998875443
No 159
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=31.83 E-value=18 Score=23.24 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...+..+|.++-.-
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 344455577777654 457778999999999999999987543
No 160
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=31.70 E-value=40 Score=21.56 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
......|....|-. .....||...|++...|..+|.++-.-
T Consensus 24 ~aA~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 24 LAARNLFIERPYAQ-VSIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHHHHTSCCSC-CCHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHHHHHCCCCc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33444477777665 446778999999999999999988544
No 161
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=31.27 E-value=28 Score=19.63 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999997653
No 162
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=31.24 E-value=24 Score=23.66 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
......|....|-. .....||...|++...|..+|.++-.-
T Consensus 50 ~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L 90 (255)
T 3g1o_A 50 ATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAV 90 (255)
T ss_dssp HHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33444466666543 456778999999999999999987544
No 163
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=31.18 E-value=29 Score=23.58 Aligned_cols=49 Identities=24% Similarity=0.229 Sum_probs=33.9
Q ss_pred CCCCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 21 TAFSGEQ-LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 21 ~~~~~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
...+.++ +..-...|....|-. .....||..+|++...|..+|.++-.-
T Consensus 27 ~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~L 76 (241)
T 2hxi_A 27 RRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTEL 76 (241)
T ss_dssp -CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHH
Confidence 3455544 344455566666554 456778999999999999999987544
No 164
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=31.12 E-value=21 Score=19.55 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45689999999999999987653
No 165
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=30.95 E-value=72 Score=17.69 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCCCCCCCCHHHHHH-HHHHHHhCC-CCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHH
Q psy4625 16 EKRPRTAFSGEQLSR-LKVEFTENR-YLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73 (120)
Q Consensus 16 ~rr~R~~~~~~q~~~-L~~~F~~~~-~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk 73 (120)
.++.|-+++.+.-.. +....+... ...+..+..+...-||+..+|+.=+|--|...+|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 355678888876444 444444442 3335566666666689999999999987777655
No 166
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.83 E-value=94 Score=19.00 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHhCCChhhHHHHH
Q psy4625 13 RSKEKRPRTAFSGEQLSRLKVEFTENRYLTER-RRQELANELGLNEAQIKIWF 64 (120)
Q Consensus 13 ~~~~rr~R~~~~~~q~~~L~~~F~~~~~p~~~-~~~~La~~l~l~~~~V~~WF 64 (120)
..++.+....-+.+|+.+-+..+..+. ++.. ....|+..+|+++..+..=+
T Consensus 10 ~~~~~~~~~~aTaeQ~rLAq~i~~~~d-~d~eekVk~L~EmtG~seeeAr~AL 61 (104)
T 1wj7_A 10 NQTQHKQRPQATAEQIRLAQMISDHND-ADFEEKVKQLIDITGKNQDECVIAL 61 (104)
T ss_dssp CCCTTCCSSSSSHHHHHHHHHHHHSCC-HHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred ccCccccccccCHHHHHHHHHHhcCCc-ccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 334445566789999999888876543 4443 44556667799988776554
No 167
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=30.75 E-value=23 Score=19.94 Aligned_cols=22 Identities=14% Similarity=0.484 Sum_probs=18.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998764
No 168
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=30.20 E-value=36 Score=21.46 Aligned_cols=43 Identities=33% Similarity=0.427 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+......|....|-. .....||...|++...+-.+|.++-.-.
T Consensus 9 l~aA~~lf~~~G~~~-~s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEA-TSVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 344455577777655 3467789999999999999999886654
No 169
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=30.14 E-value=48 Score=18.92 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHHHhhcCC
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQK 78 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kk~~~~~ 78 (120)
+.++.-.|+.++||.+.-... =-.|||.+|+..+.+-
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq--------------aRRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH--------------HHHHHHHHHHHHHHHH
Confidence 345556689999998542111 1258888888876543
No 170
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=30.12 E-value=1.2e+02 Score=20.21 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 20 R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
...+++.+..+|.-.+ .. ..-.++|..+|+++..|+....+-+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g----~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VG----KTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TT----CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3458888888886642 22 234667899999999999988765554
No 171
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=29.92 E-value=37 Score=20.29 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=16.8
Q ss_pred HHHHHHHhCCChhhHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFq 65 (120)
..++|..+|++...++.|=.
T Consensus 5 i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 34678999999999999964
No 172
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=29.85 E-value=36 Score=18.62 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999997654
No 173
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.62 E-value=38 Score=20.22 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChhhHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFq 65 (120)
...+|..+|++...++.|=.
T Consensus 4 i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35679999999999999964
No 174
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=29.44 E-value=15 Score=18.89 Aligned_cols=43 Identities=30% Similarity=0.427 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 24 SGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 24 ~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
+.+--..|..+-...+-.+.......|..+||...-|..+|..
T Consensus 5 seeverklkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 5 SEEVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3343445555545555555667777899999999889998865
No 175
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.01 E-value=25 Score=20.41 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.9
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5678999999999999998763
No 176
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.68 E-value=33 Score=20.26 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45689999999999999998754
No 177
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=28.64 E-value=44 Score=18.39 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.0
Q ss_pred HHHHHHHhCCChhhHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqN 66 (120)
...||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 456899999999999999876
No 178
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=28.58 E-value=46 Score=21.06 Aligned_cols=43 Identities=28% Similarity=0.326 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+......|....|-. .....||...|++...|...|.++-.-.
T Consensus 22 l~aa~~lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 64 (213)
T 2qtq_A 22 LQTASNIMREGDVVD-ISLSELSLRSGLNSALVKYYFGNKAGLL 64 (213)
T ss_dssp HHHHHHHHHHHTSSC-CCHHHHHHHHCCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCChhhHhHhcCCHHHHH
Confidence 445555677777655 3467789999999999999999875443
No 179
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.34 E-value=36 Score=21.19 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...+..+|.++-.-
T Consensus 15 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 56 (195)
T 3ppb_A 15 LETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQL 56 (195)
T ss_dssp HHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 455556677777655 457788999999999999999987544
No 180
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=28.14 E-value=36 Score=17.89 Aligned_cols=22 Identities=0% Similarity=0.010 Sum_probs=18.3
Q ss_pred HHHHHHHhC--CChhhHHHHHHHH
Q psy4625 46 RQELANELG--LNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~--l~~~~V~~WFqNr 67 (120)
...||..+| ++...|..|...+
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~ 47 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGD 47 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCC
Confidence 456899999 9999999998754
No 181
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=28.02 E-value=27 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|-.++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 4578999999999999998654
No 182
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=27.44 E-value=30 Score=22.05 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR 68 (120)
+......|....|-. .....||...|++...|...|.++-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 445555577777654 4567789999999999999998764
No 183
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=27.43 E-value=43 Score=21.29 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|....|-. .....||...|++...+...|.++-.-
T Consensus 18 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~L 59 (197)
T 2hyt_A 18 LATARKVFSERGYAD-TSMDDLTAQASLTRGALYHHFGDKKGL 59 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCTTHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 334445588877755 446778999999999999999987433
No 184
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=27.42 E-value=23 Score=24.20 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=35.5
Q ss_pred CCCCCHHH-HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 20 RTAFSGEQ-LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 20 R~~~~~~q-~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+...+.++ +..-...|....|-. .....||..+|++...|...|.++-.-
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~L 66 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAEL 66 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHHH
Confidence 33455544 445556677777654 456778999999999999999887544
No 185
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=27.19 E-value=24 Score=22.16 Aligned_cols=36 Identities=6% Similarity=0.266 Sum_probs=28.1
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 32 KVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 32 ~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
...|... .......||...|++...|..+|.++-.-
T Consensus 24 ~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (190)
T 2v57_A 24 MLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDL 59 (190)
T ss_dssp HHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 3335555 66778889999999999999999887543
No 186
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=26.82 E-value=57 Score=21.20 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 30 RLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 30 ~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
.-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 43 aA~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~L 82 (221)
T 3g7r_A 43 TATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKDDL 82 (221)
T ss_dssp HHHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 3344477777654 456778999999999999999987543
No 187
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=26.58 E-value=1.2e+02 Score=18.78 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhH
Q psy4625 19 PRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQI 60 (120)
Q Consensus 19 ~R~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V 60 (120)
.+..++.+++..|...+.....+.......|+..+||....|
T Consensus 3 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~ 44 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEA 44 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHH
T ss_pred ccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHH
Confidence 345689999999988887666555556667777888776544
No 188
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=26.37 E-value=35 Score=21.51 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+..-...|....|-. .....||...|++...|..+|.++-.-.
T Consensus 13 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~ 55 (192)
T 2zcm_A 13 IDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKEEIY 55 (192)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHHHHH
Confidence 455556688777754 4577789999999999999998875443
No 189
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=26.31 E-value=38 Score=18.63 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCChhhHHHHHHH
Q psy4625 45 RRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 45 ~~~~La~~l~l~~~~V~~WFqN 66 (120)
....+|..||++..-|..|-..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 4567899999999999999843
No 190
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=26.29 E-value=32 Score=22.10 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 18 ~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L 58 (210)
T 2xdn_A 18 EAAERAFYKRGVAR-TTLADIAELAGVTRGAIYWHFNNKAEL 58 (210)
T ss_dssp HHHHHHHHHHCSTT-CCHHHHHHHHTCCTTHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCccc-CcHHHHHHHHCCChHHHHHHhCCHHHH
Confidence 33445577777665 447778999999999999999987544
No 191
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.21 E-value=22 Score=22.93 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~L 56 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDEM 56 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 444555577777654 457778999999999999999987544
No 192
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=26.17 E-value=41 Score=21.61 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...|..+|.++-.-
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~L 77 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKADF 77 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHHH
Confidence 444455577777654 457778999999999999999987543
No 193
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=26.09 E-value=45 Score=20.07 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=16.7
Q ss_pred HHHHHHHhCCChhhHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFq 65 (120)
...+|..+|+++.+|..|=.
T Consensus 26 q~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 45689999999999999743
No 194
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=26.07 E-value=26 Score=23.00 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 20 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~L 61 (208)
T 3v6g_A 20 VEAAERVIARQGLGG-LSHRRVAAEANVPVGSTTYYFNDLDAL 61 (208)
T ss_dssp HHHHHHHHHHHCTTC-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCchhHHHHcCCHHHH
Confidence 344445577777655 446778999999999999999887543
No 195
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.88 E-value=1e+02 Score=17.86 Aligned_cols=40 Identities=3% Similarity=0.036 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 22 AFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
.++.++...+...+.. .+ + ...+|..+|++...|..|+..
T Consensus 17 ~~s~~~r~~i~~~~~~-g~-s---~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI-R---PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 5777776666666653 32 2 456799999999999999964
No 196
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.87 E-value=23 Score=23.50 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|.... ......||..+|++...+...|.++-.-
T Consensus 17 l~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~L 56 (213)
T 2g7g_A 17 AEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAV 56 (213)
T ss_dssp HHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHH
Confidence 344445566655 5667888999999999999999887544
No 197
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.85 E-value=50 Score=19.01 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=18.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|-.++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~ 67 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCcCHHHHHHHHcCC
Confidence 4568999999999999997654
No 198
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=25.67 E-value=40 Score=21.20 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
......|....|-. .....||...|++...|..+|.++-.-
T Consensus 24 ~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 64 (206)
T 3kz9_A 24 EIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTREDL 64 (206)
T ss_dssp HHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34444577777665 446778999999999999999987543
No 199
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=25.66 E-value=47 Score=21.31 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 14 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tiY~~F~sKe~L 55 (202)
T 2d6y_A 14 FEAAVAEFARHGIAG-ARIDRIAAEARANKQLIYAYYGNKGEL 55 (202)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 444455577777655 446778999999999999999887544
No 200
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=25.61 E-value=38 Score=21.15 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHh
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRA 69 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~ 69 (120)
+......|....|-. .....||...|++...+...|.++-.
T Consensus 8 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 48 (194)
T 3bqz_B 8 LGVAKELFIKNGYNA-TTTGEIVKLSESSKGNLYYHFKTKEN 48 (194)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHTTCCHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHHH
Confidence 445555677777654 44677899999999999999988743
No 201
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=25.31 E-value=44 Score=21.12 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...|..+|.++-.-
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 51 (185)
T 2yve_A 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHAL 51 (185)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHHHH
Confidence 444555577777654 457778999999999999999887544
No 202
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=25.27 E-value=68 Score=19.45 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 24 SGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 24 ~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
+..|....+.....-.- .+.....|+..+++....+.-|+.-
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 34454444444332221 2224557999999999999999853
No 203
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=25.17 E-value=15 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHh
Q psy4625 44 RRRQELANELGLNEAQIKIWFQNKRA 69 (120)
Q Consensus 44 ~~~~~La~~l~l~~~~V~~WFqNrR~ 69 (120)
....++|..+|++...|+.++..-+.
T Consensus 215 ~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 215 QTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp --------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667899999999999988765443
No 204
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=25.10 E-value=1e+02 Score=20.47 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHH
Q psy4625 27 QLSRLKVEFTENRYLTERRRQELANELGLNEAQIK 61 (120)
Q Consensus 27 q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~ 61 (120)
-+.+|...=....|.+......+|..|+|+...|.
T Consensus 27 li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 27 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 44555555445589999999999999999987763
No 205
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=25.00 E-value=35 Score=21.94 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 17 ~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~t~Y~~F~sKe~L 57 (210)
T 3vib_A 17 LAALETFYRKGIAR-TSLNEIAQAAGVTRDALYWHFKNKEDL 57 (210)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhCccc-CCHHHHHHHHCcCHHHHHHHCCCHHHH
Confidence 33445588888765 446778999999999999999987544
No 206
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=24.76 E-value=1.1e+02 Score=19.92 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
..++..+..+|.-..+- .....||..++++...|+....+=+.|.
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 35788888877665433 2356789999999999999887666554
No 207
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=24.71 E-value=47 Score=20.53 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...+...|.++-.-
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 55 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKDEL 55 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHHHH
Confidence 344455577777654 457778999999999999999987544
No 208
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=24.68 E-value=44 Score=21.51 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 18 ~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L 58 (210)
T 2wui_A 18 DAAERVFLEKGVGT-TAMADLADAAGVSRGAVYGHYKNKIEV 58 (210)
T ss_dssp HHHHHHHHHSCTTT-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33344588887765 446778999999999999999987544
No 209
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=24.57 E-value=1.1e+02 Score=17.82 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHH
Q psy4625 44 RRRQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 44 ~~~~~La~~l~l~~~~V~~WFqNr 67 (120)
.....||..+||++..+...|+..
T Consensus 24 ~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 557788999999998888877543
No 210
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.54 E-value=43 Score=18.85 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHH
Q psy4625 31 LKVEFTENRYLTERRRQELANELGLNEAQIKIWF 64 (120)
Q Consensus 31 L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WF 64 (120)
+..+...+.--.......||..+|++...|....
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3345555552233446678999999999887655
No 211
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=24.52 E-value=28 Score=22.96 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...|...|.++-.-
T Consensus 36 l~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe~L 77 (230)
T 2iai_A 36 LSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKEEL 77 (230)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 556666688877655 446778999999999999999887433
No 212
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=24.35 E-value=28 Score=19.87 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999997654
No 213
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=24.16 E-value=53 Score=20.53 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChhhHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFq 65 (120)
...+|..+|++...|+.|=.
T Consensus 3 I~e~A~~~gvs~~tLR~ye~ 22 (135)
T 1q06_A 3 ISDVAKITGLTSKAIRFYEE 22 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35689999999999999964
No 214
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=23.98 E-value=21 Score=23.82 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+......|....|-. .....||...|++...|..+|.++-.-.
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L~ 71 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQIF 71 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHH
Confidence 334445577777654 4567789999999999999999875443
No 215
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.91 E-value=1.4e+02 Score=18.61 Aligned_cols=46 Identities=4% Similarity=-0.086 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh-------CCChhhHHHHHHH
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLTERRRQELANEL-------GLNEAQIKIWFQN 66 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l-------~l~~~~V~~WFqN 66 (120)
..++.++...+...+..++..+..+........ .++...|..|+..
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 456777777777777777766665544422222 4678899999864
No 216
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=23.83 E-value=1.9e+02 Score=20.24 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHH-HHHHHHhCCCCCHHHHHHHHHHhC---CChhhHHHHHHH
Q psy4625 25 GEQLSR-LKVEFTENRYLTERRRQELANELG---LNEAQIKIWFQN 66 (120)
Q Consensus 25 ~~q~~~-L~~~F~~~~~p~~~~~~~La~~l~---l~~~~V~~WFqN 66 (120)
..++.. +...|. ...........|+..+| ++...|..|++.
T Consensus 8 ~~~~R~~i~~~~~-~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r 52 (345)
T 3hot_A 8 KEQTRTVLIFCFH-LKKTAAESHRMLVEAFGEQVPTVKTCERWFQR 52 (345)
T ss_dssp HHHHHHHHHHHHH-TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 334333 333344 44455555666788889 999999999964
No 217
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.77 E-value=36 Score=18.84 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHH
Q psy4625 45 RRQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 45 ~~~~La~~l~l~~~~V~~WFqNrR 68 (120)
....||..+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 345899999999999999987654
No 218
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=23.70 E-value=44 Score=19.93 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45689999999999999987653
No 219
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=23.63 E-value=20 Score=22.61 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHh
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRA 69 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~ 69 (120)
+......|....|-. .....||...|++...+..+|.++-.
T Consensus 16 l~aa~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSG-VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCccc-CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 445555677777655 44677899999999999999988754
No 220
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=23.61 E-value=31 Score=21.73 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...+..+|.++-.-
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 55 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEGL 55 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 444455577776543 446778999999999999999987543
No 221
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=23.48 E-value=1.1e+02 Score=17.71 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHH
Q psy4625 44 RRRQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 44 ~~~~~La~~l~l~~~~V~~WFqNr 67 (120)
.....||..+||++..+...|+..
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 346678888999988888777643
No 222
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.44 E-value=54 Score=20.77 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHHHHHhCCChhhHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFq 65 (120)
...+|..+|++...|+.|=.
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999964
No 223
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=23.36 E-value=40 Score=21.29 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...+..+|.++-.-
T Consensus 18 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKEDI 59 (202)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHHHH
Confidence 334444577777644 457778999999999999999887543
No 224
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=23.35 E-value=39 Score=22.20 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHh
Q psy4625 30 RLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRA 69 (120)
Q Consensus 30 ~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~ 69 (120)
.....|....|-. .....||...|++...|..+|.++-.
T Consensus 51 aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 51 ACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHHH
Confidence 3334477777654 44677899999999999999988743
No 225
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=23.11 E-value=24 Score=23.30 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+..-...|....|-. .....||...|++...|..+|.++-.-
T Consensus 41 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~L 82 (237)
T 3kkd_A 41 LDAAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDIDDL 82 (237)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHHHH
T ss_pred HHHHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 334444577777643 456778999999999999999988544
No 226
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=22.83 E-value=50 Score=21.36 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=27.1
Q ss_pred HHHHHHH---HHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVE---FTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~---F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..+|+.. |....|-. .....||...|++...|..+|.++-.-
T Consensus 27 ~~Il~aA~~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe~L 71 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKAAI 71 (214)
T ss_dssp HHHHHHHHHC------CC-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHHHH
Confidence 4455554 66666654 457778999999999999999887544
No 227
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.79 E-value=58 Score=20.73 Aligned_cols=21 Identities=10% Similarity=0.053 Sum_probs=17.4
Q ss_pred HHHHHHHhCCChhhHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqN 66 (120)
...+|..+|++...++.|=..
T Consensus 7 I~evA~~~Gvs~~tLR~ye~~ 27 (146)
T 3hh0_A 7 ISEFASVGDVTVRALRYYDKI 27 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 456789999999999999653
No 228
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.62 E-value=94 Score=19.42 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHh-------CCCCCHHHHHHHHHHhCCCh
Q psy4625 22 AFSGEQLSRLKVEFTE-------NRYLTERRRQELANELGLNE 57 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~-------~~~p~~~~~~~La~~l~l~~ 57 (120)
.++.+|+..|..+|.. ..+.+..+...+...+|+.+
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 4788999999998853 24677777777777777643
No 229
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=22.54 E-value=1.5e+02 Score=22.27 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
++..+..+|...|-.... .......+|..+|++...|+.+...-+.+.|
T Consensus 361 L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 455566666666643221 2345677899999999999999988777777
No 230
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=22.42 E-value=54 Score=20.80 Aligned_cols=42 Identities=10% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||..+|++...+-..|.++-.-
T Consensus 18 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~~K~~L 59 (189)
T 3vp5_A 18 YDACLNEFQTHSFHE-AKIMHIVKALDIPRGSFYQYFEDLKDA 59 (189)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHCCccc-ccHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 344455577777655 457788999999999999999887433
No 231
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.40 E-value=45 Score=20.07 Aligned_cols=23 Identities=4% Similarity=0.127 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45789999999999999998753
No 232
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=22.03 E-value=23 Score=23.20 Aligned_cols=44 Identities=7% Similarity=-0.004 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
+......|....|-. .....||...|++...|...|.++-.-..
T Consensus 34 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~ 77 (217)
T 3hta_A 34 IDAAIRVVGQKGIAG-LSHRTVAAEADVPLGSTTYHFATLDDLMV 77 (217)
T ss_dssp HHHHHHHHHHHTGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHcCCCcchhhhcCCCHHHHHH
Confidence 334444477777633 45778899999999999999998755433
No 233
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=21.95 E-value=44 Score=21.21 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...|...|.++-.-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L 61 (212)
T 3knw_A 20 LDSGFHLVLRKGFVG-VGLQEILKTSGVPKGSFYHYFESKEAF 61 (212)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 334444577777654 456778999999999999999987543
No 234
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.76 E-value=53 Score=19.97 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|-..++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 44567888888888888887543
No 235
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.59 E-value=63 Score=20.55 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=17.3
Q ss_pred HHHHHHHhCCChhhHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFq 65 (120)
..++|..+|++...|+.|=.
T Consensus 19 I~evA~~~gvs~~tLR~Ye~ 38 (148)
T 3gpv_A 19 IGQVAKMQHLTISQIRYYDK 38 (148)
T ss_dssp HHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 56789999999999999964
No 236
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=21.53 E-value=42 Score=21.56 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+......|....|-. .....||...|++...|..+|.++-.-.
T Consensus 21 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~sKe~L~ 63 (221)
T 3c2b_A 21 LDQALRLLVEGGEKA-LTTSGLARAANCSKESLYKWFGDRDGLL 63 (221)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHH
Confidence 344445577777644 4577789999999999999999875443
No 237
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=21.40 E-value=51 Score=20.55 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
......|....|- ......||...|++...+..+|.++-.-
T Consensus 21 ~aA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L 61 (191)
T 4aci_A 21 EGARRCFAEHGYE-GATVRRLEEATGKSRGAIFHHFGDKENL 61 (191)
T ss_dssp HHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHhCcc-cCCHHHHHHHHCCCchHHHHHCCCHHHH
Confidence 3444446555532 2346778999999999999999987543
No 238
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=21.25 E-value=34 Score=20.38 Aligned_cols=12 Identities=42% Similarity=0.889 Sum_probs=8.5
Q ss_pred hHHHHHHHHHhH
Q psy4625 59 QIKIWFQNKRAK 70 (120)
Q Consensus 59 ~V~~WFqNrR~k 70 (120)
-|-.||+||-+.
T Consensus 18 liwlwfrnrpaa 29 (117)
T 1w8x_P 18 LIWLWFRNRPAA 29 (117)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHccChHH
Confidence 366899997543
No 239
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.15 E-value=80 Score=18.33 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHH
Q psy4625 44 RRRQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 44 ~~~~~La~~l~l~~~~V~~WFqNr 67 (120)
.....||..+||++..+...|..-
T Consensus 22 ~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 22 MSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 356778888999988888877543
No 240
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=21.13 E-value=47 Score=20.68 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..-...|....|-. .....||...|++...+-..|.++-.-
T Consensus 9 ~aA~~lf~~~Gy~~-~s~~~Ia~~agvskgtlY~~F~sKe~L 49 (179)
T 2eh3_A 9 EVSKELFFEKGYQG-TSVEEIVKRANLSKGAFYFHFKSKEEL 49 (179)
T ss_dssp HHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHcCCcc-CCHHHHHHHhCCCcHHHHHHcCCHHHH
Confidence 34445577777665 446778999999999999999887543
No 241
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=21.11 E-value=1.1e+02 Score=16.38 Aligned_cols=44 Identities=7% Similarity=0.173 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHhC-CChhhHHHHHH
Q psy4625 22 AFSGEQLSRLKVEFTE-----NRYLTERRRQELANELG-LNEAQIKIWFQ 65 (120)
Q Consensus 22 ~~~~~q~~~L~~~F~~-----~~~p~~~~~~~La~~l~-l~~~~V~~WFq 65 (120)
.+++.+...|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4677888888888854 34677777777776666 55667777774
No 242
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=21.03 E-value=44 Score=19.64 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999999987643
No 243
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.96 E-value=39 Score=21.47 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..-...|....|-. .....||...|++...+..+|.++-.-
T Consensus 15 ~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L 55 (199)
T 2o7t_A 15 TTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDRFTL 55 (199)
T ss_dssp HHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34444577776544 457778999999999999999887443
No 244
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=20.89 E-value=65 Score=20.63 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..-...|....|-. .....||...|++...|...|.++-.-
T Consensus 19 ~aA~~lf~~~G~~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L 59 (211)
T 3bhq_A 19 QAATAAFISKGYDG-TSMEEIATKAGASKQTVYKHFTDKETL 59 (211)
T ss_dssp HHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 33344577777654 457778999999999999999887543
No 245
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=20.88 E-value=47 Score=21.03 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...+..+|.++-.-
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (220)
T 3lhq_A 20 LDVALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKSDL 61 (220)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHHHH
Confidence 334445577777654 456778999999999999999887543
No 246
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=20.76 E-value=49 Score=20.97 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
......|....|-. .....||...|++...|...|.++-.-
T Consensus 25 ~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 25 SAALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 34444477777644 457788999999999999999987544
No 247
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.76 E-value=31 Score=22.31 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...|..+|.++-.-
T Consensus 14 l~aA~~lf~~~Gy~~-~s~~~IA~~AGvs~gt~Y~yF~sKe~L 55 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQ-SQVSKIAKQAGVADGTIYLYFKNKEDI 55 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 444455577777654 446778999999999999999987543
No 248
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=20.74 E-value=37 Score=22.36 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~ 71 (120)
+......|....|-. .....||...|++...+..+|.++-.-.
T Consensus 19 l~AA~~l~~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll 61 (231)
T 2qib_A 19 IGVALDLFSRRSPDE-VSIDEIASAAGISRPLVYHYFPGKLSLY 61 (231)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 334445577777643 5577789999999999999999875443
No 249
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=20.73 E-value=46 Score=21.24 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=30.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 30 RLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 30 ~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
.-...|....|-. .....||...|++...+..+|.++-.-
T Consensus 22 aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L 61 (204)
T 2ibd_A 22 IAATLFAERGLRA-TTVRDIADAAGILSGSLYHHFDSKESM 61 (204)
T ss_dssp HHHHHHHHHCSTT-CCHHHHHHHTTSCHHHHHHHCSCHHHH
T ss_pred HHHHHHHHcCchh-cCHHHHHHHhCCCchhHHHhcCCHHHH
Confidence 3344577777654 457778999999999999999987543
No 250
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=20.64 E-value=61 Score=18.48 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhh----HHHHHHHH
Q psy4625 46 RQELANELGLNEAQ----IKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~----V~~WFqNr 67 (120)
...||..+|++... |..|-.++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~ 42 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGK 42 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCC
Confidence 56789999999998 99998764
No 251
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=20.61 E-value=1.5e+02 Score=17.71 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHh------CCCCCHHHHHHHHHHhCC--ChhhHHHHHH
Q psy4625 21 TAFSGEQLSRLKVEFTE------NRYLTERRRQELANELGL--NEAQIKIWFQ 65 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~------~~~p~~~~~~~La~~l~l--~~~~V~~WFq 65 (120)
..++..++..|...|.. +.+.+..+...+...+|+ +...+..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45788888888888853 456777877777777763 4556666664
No 252
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=20.61 E-value=53 Score=20.42 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=27.0
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 33 VEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 33 ~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
..|....|- ......||...|++...|..+|.++-.-
T Consensus 18 ~l~~~~G~~-~~t~~~IA~~agvs~~tlY~~F~sK~~L 54 (186)
T 2jj7_A 18 KKFGERGYE-GTSIQEIAKEAKVNVAMASYYFNGKENL 54 (186)
T ss_dssp HHHHHHHHH-HCCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHcCCc-cCCHHHHHHHhCCChhhhhhhcCCHHHH
Confidence 345554432 2446778999999999999999887544
No 253
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=20.59 E-value=46 Score=19.26 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNK 67 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNr 67 (120)
...||..+|++...|..|..++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~ 55 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQ 55 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4678999999999999998764
No 254
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=20.59 E-value=99 Score=20.19 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCC----HHHHHHHHHHhCCChhhHHHHHHH
Q psy4625 21 TAFSGEQLSRLKVEFTENRYLT----ERRRQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 21 ~~~~~~q~~~L~~~F~~~~~p~----~~~~~~La~~l~l~~~~V~~WFqN 66 (120)
..|+.++.......-...-.|. ......+|..+|++...+..|-..
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 3477777665433211110111 135678899999999999999864
No 255
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.56 E-value=48 Score=18.54 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQNKR 68 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqNrR 68 (120)
...||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45689999999999999986643
No 256
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=20.56 E-value=42 Score=21.42 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=31.1
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 28 LSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 28 ~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
+......|....|-. .....||...|++...+...|.++-.-
T Consensus 15 l~aA~~lf~~~G~~~-~t~~~Ia~~Agvs~gt~Y~yF~sKe~L 56 (204)
T 3anp_C 15 FRAAMELFRNRGFQE-TTATEIAKAAHVSRGTFFNYYPYKEAV 56 (204)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSTHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCchHHHHHHcCCHHHH
Confidence 334445577777654 447778999999999999999887433
No 257
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=20.55 E-value=2.1e+02 Score=21.80 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhHHH
Q psy4625 23 FSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72 (120)
Q Consensus 23 ~~~~q~~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k~k 72 (120)
++..+..+|...|-.... .......+|..+|++...|+.+...-+.+.|
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 455555666666643211 2245677899999999999999987777766
No 258
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=20.52 E-value=62 Score=18.51 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=21.2
Q ss_pred HHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHH
Q psy4625 33 VEFTENRYLTERRRQELANELGLNEAQIKIWFQ 65 (120)
Q Consensus 33 ~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFq 65 (120)
.++..+.--.......||..||++...|...+.
T Consensus 17 ~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 17 KFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 444445411223456789999999998887653
No 259
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=20.48 E-value=46 Score=19.27 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.7
Q ss_pred HHHHHHHhCCChhhHHHHHHH
Q psy4625 46 RQELANELGLNEAQIKIWFQN 66 (120)
Q Consensus 46 ~~~La~~l~l~~~~V~~WFqN 66 (120)
...||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999987
No 260
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=20.01 E-value=49 Score=20.75 Aligned_cols=41 Identities=7% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhCCChhhHHHHHHHHHhH
Q psy4625 29 SRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70 (120)
Q Consensus 29 ~~L~~~F~~~~~p~~~~~~~La~~l~l~~~~V~~WFqNrR~k 70 (120)
......|....|-. .....||...|++...+...|.++-.-
T Consensus 21 ~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (203)
T 3f1b_A 21 DAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDEL 61 (203)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHHH
Confidence 34444577777654 457778999999999999999887544
Done!