RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4625
(120 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 79.8 bits (198), Expect = 2e-21
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
+R RT F+ EQL L+ EF +NRY + R+ELA +LGL E Q+K+WFQN+RAK K+
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 71.5 bits (176), Expect = 4e-18
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72
+R RT+F+ EQL L+ EF +N Y + R+ELA +LGL+E Q+K+WFQN+RAK K
Sbjct: 2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 70.4 bits (173), Expect = 1e-17
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
+R RT F+ EQL L+ EF +N Y + R+ELA ELGL E Q+KIWFQN+RAK+K+
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57
>gnl|CDD|119045 pfam10525, Engrail_1_C_sig, Engrailed homeobox C-terminal signature
domain. Engrailed homeobox proteins are characterized
by the presence of a conserved region of some 20
amino-acid residues located at the C-terminal of the
'homeobox' domain. This domain of approximately 20
residues forms a kind of a signature pattern for this
subfamily of proteins.
Length = 32
Score = 64.6 bits (158), Expect = 1e-15
Identities = 24/31 (77%), Positives = 25/31 (80%)
Query: 74 ASGQKNPLALQLMAQGLYNHSTVPMSDEEME 104
ASG KNPLALQLMAQGLYNHST P D+E
Sbjct: 1 ASGVKNPLALQLMAQGLYNHSTTPKDDDEDS 31
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 53.2 bits (128), Expect = 6e-10
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 11 DKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70
D S K R + EQL L+ EF N Y + R +L+ L + ++IWFQNKRAK
Sbjct: 46 DGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAK 105
Query: 71 IKKAS 75
KK
Sbjct: 106 EKKKR 110
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 28.2 bits (64), Expect = 0.15
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 38 NRYLTERRRQELANELGLNEAQIKIWFQNKR 68
N Y +E + ELA + GL+ QI WF N R
Sbjct: 8 NPYPSEEEKSELARQTGLSRKQIDNWFINAR 38
>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed.
Length = 454
Score = 28.6 bits (65), Expect = 0.75
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 37 ENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQKNPLALQLMAQGLYN 92
RY E+A ELGL+ ++ + AS + L A+G
Sbjct: 73 IARY------AEIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFKARGEDL 122
>gnl|CDD|223461 COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General
function prediction only].
Length = 291
Score = 27.7 bits (62), Expect = 1.4
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNE 57
F G L+ V + L++ + Q +A E L+E
Sbjct: 14 SKPFGGNPLA---V-VLDADGLSDEQMQAIAREFNLSE 47
>gnl|CDD|239321 cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed
of proteins similar to Com1, a 27-kDa outer
membrane-associated immunoreactive protein originally
found in both acute and chronic disease strains of the
pathogenic bacteria Coxiella burnetti. It contains a
CXXC motif, assumed to be imbedded in a DsbA-like
structure. Its homology to DsbA suggests that the
protein is a protein disulfide oxidoreductase. The role
of such a protein in pathogenesis is unknown.
Length = 154
Score = 26.8 bits (60), Expect = 2.1
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 35 FTENRYLTERRRQELANELGLNEAQIK 61
L E +A + GL+EA++K
Sbjct: 77 MATRGRLNEESLLRIAKKAGLDEAKLK 103
>gnl|CDD|131469 TIGR02416, CO_dehy_Mo_lg, carbon-monoxide dehydrogenase, large
subunit. This model represents the large subunits of
group of carbon-monoxide dehydrogenases that include
molybdenum as part of the enzymatic cofactor. There are
various forms of carbon-monoxide dehydrogenase;
Salicibacter pomeroyi DSS-3, for example, has two forms.
Note that, at least in some species, the active site Cys
is modified with a selenium attached to (rather than
replacing) the sulfur atom. This is termed
selanylcysteine, and created post-translationally, in
contrast to selenocysteine incorporation during
translation as for many other selenoproteins [Energy
metabolism, Other].
Length = 770
Score = 26.8 bits (59), Expect = 3.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 30 RLKVEFTENRYLTERRRQELANELGLNEAQIKI 62
R TE Y ER LA L ++ A ++I
Sbjct: 359 RCSFRVTEAVYAIERAVDTLAQRLEMDSADLRI 391
>gnl|CDD|227273 COG4937, COG4937, Predicted regulatory domain of prephenate
dehydrogenase [Translation, ribosomal structure and
biogenesis].
Length = 171
Score = 26.0 bits (57), Expect = 4.5
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 7 KSGKDKRSKEKRPRT-AFSGEQLSRLKVEFTENRY 40
KSGK K K K S ++L + K E E +
Sbjct: 50 KSGKGKEQKFKILNVRVLSEDELRKWKKEHLEKKV 84
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 25.5 bits (56), Expect = 7.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 80 PLALQLMAQGLYNHSTV 96
PLAL L A G + ++TV
Sbjct: 172 PLALMLGAPGKFANATV 188
>gnl|CDD|221839 pfam12898, Stc1, Stc1 domain. The domain contains 8 conserved
cysteines that may bind to zinc. In S. pombe this
protein acts as a protein linker which links the
chromatin modifying CLRC complex to RNAi by tethering
it to the RITS complex. The region is reported as a LIM
domain here, but has a slightly different arrangement
of its CxxC pairs from the Pfam LIM domain pfam00412,
hence why it is not part of that family. The tandem
zinc-finger structure could mediate protein-protein
interactions.
Length = 84
Score = 24.7 bits (54), Expect = 8.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 10 KDKRSKEKRPRTAFSGEQLSRLK 32
K K+ RPR+AFS QL +L+
Sbjct: 1 KCAVCKKIRPRSAFSKRQLEKLR 23
>gnl|CDD|153082 cd00644, HMG-CoA_reductase_classII, Class II
hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase
(HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA)
reductase (HMGR), class II, prokaryotic enzyme is a
homodimer. Class II enzymes are found primarily in
prokaryotes and Archaeoglobus fulgidus and are soluble
as they lack the membrane region. Enzymes catalyze the
synthesis of coenzyme A and mevalonate in isoprenoid
synthesis. Bacteria, such as Pseudomonas mevalonii,
which rely solely on mevalonate for their carbon
source, catalyze the reverse reaction, using an
NAD-dependent HMGR to deacetylate mevalonate into
3-hydroxy-3-methylglutaryl-CoA. Human and bacterial
HMGR differ in their active site architecture.
Length = 417
Score = 25.5 bits (57), Expect = 9.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 43 ERRRQELANELGLNEAQIKIWFQN 66
E R Q LA GL+E +++
Sbjct: 9 EERLQILAEFAGLSEEDVQLLKSG 32
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 25.4 bits (56), Expect = 9.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 15 KEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQI 60
K +L R + E TE R +ELA ELG AQ+
Sbjct: 216 KYLPGPEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQV 261
>gnl|CDD|179052 PRK00513, minC, septum formation inhibitor; Reviewed.
Length = 214
Score = 25.2 bits (56), Expect = 9.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 36 TENRYLTERRRQELANELGLNEAQIKI 62
NR L E + QEL ++ Q +
Sbjct: 56 VGNRLLDEEQLQEL-KDVITERRQTAV 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.125 0.334
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,733,484
Number of extensions: 487832
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 55
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.3 bits)