RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4625
(120 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 71.0 bits (174), Expect = 2e-18
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76
+R RT+F+ EQ+ L+ EF Y R+ LA ++ L EA+I++WF N+RAK ++
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 77 QKN 79
+N
Sbjct: 62 LRN 64
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 71.4 bits (175), Expect = 2e-18
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71
++ R ++ Q L+ EF N YLT RR E+A L L E Q+KIWFQN+R K+
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 68
Query: 72 KKASGQKN 79
KK + +
Sbjct: 69 KKINKDRA 76
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 70.2 bits (172), Expect = 4e-18
Identities = 30/56 (53%), Positives = 37/56 (66%)
Query: 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75
R ++ Q L+ EF NRYLT RRR E+A+ L L E QIKIWFQN+R K KK +
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 70.2 bits (172), Expect = 4e-18
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
K + FS +Q L+ +F +YL+ R+ LA L L+E Q+K WFQN+RAK ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 69.5 bits (170), Expect = 5e-18
Identities = 45/53 (84%), Positives = 49/53 (92%)
Query: 18 RPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAK 70
RPRTAFS EQL+RLK EF ENRYLTERRRQ+L++ELGLNEAQIKIWFQN RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 70.0 bits (171), Expect = 8e-18
Identities = 31/71 (43%), Positives = 41/71 (57%)
Query: 3 SRRIKSGKDKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKI 62
+ K + RT F+ QL+ L+ EF N+YL+ RR E+A L LNE Q+KI
Sbjct: 14 PKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 73
Query: 63 WFQNKRAKIKK 73
WFQN+R K KK
Sbjct: 74 WFQNRRMKQKK 84
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 68.4 bits (167), Expect = 2e-17
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
++ R +S QL L+ E+ N+++T+ +R++++ L+E QI IWFQN+R K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 66.8 bits (163), Expect = 7e-17
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 19 PRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKR 68
PR F+ Q L F EN+ ++ + ++ +LGL + + +F N R
Sbjct: 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 65.3 bits (159), Expect = 3e-16
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 18 RPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
R RTAF+ +QL RL+ EF + Y++ RR ELA +L L E+ IK+WFQN+R K K+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 64.6 bits (157), Expect = 5e-16
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
++PRT F+ QL L+ +F + +YL+ R E ++ L L E Q+KIWFQN+RAK K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 64.9 bits (158), Expect = 6e-16
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 15 KEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74
K R RT + +QL L+ + N +++L GL+ I++WFQNKR K KK
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 75 S 75
S
Sbjct: 62 S 62
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 64.2 bits (156), Expect = 1e-15
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 15 KEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
K++R RT FS QL L+ F +Y R+ELA L EA+I++WFQN+RA+++K
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 59
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 63.4 bits (154), Expect = 2e-15
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76
+R RT F+ Q++ L+ F + RYLT R +L+ +L L AQ+KIWF+N+R + K S
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 77 QK 78
Q
Sbjct: 62 QH 63
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 61.7 bits (150), Expect = 7e-15
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 17 KRPRTAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
K R + ++ + + Y TE ++++A + L Q+ WF N R +I +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 61.5 bits (149), Expect = 9e-15
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
+R RT F+ +QL +L+ F NRY R+E+A L EA++++WF+N+RAK +K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 60.8 bits (147), Expect = 2e-14
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 12 KRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKI 71
+K+++ R F+ Q L+ F + RYL+ R+ LA+ + L Q+KIWFQN R K
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64
Query: 72 KKASGQK 78
K+A +K
Sbjct: 65 KRAQNEK 71
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 59.9 bits (145), Expect = 4e-14
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72
+++ S + + L+ F + L + ++E+A + G+ Q+++WF NKR + K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 60.3 bits (146), Expect = 4e-14
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76
++ R FS Q+ L+ F + +YL+ R+ LA+ + L Q+KIWFQN R K+K+ +
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 77 QK 78
K
Sbjct: 63 DK 64
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 59.5 bits (144), Expect = 5e-14
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 18 RPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
+ RT S L+ F E+ + + +A EL L + +++WF N+R + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 57.7 bits (139), Expect = 5e-13
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 17 KRPRTAFSGEQLSRLKVEFTE---NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
+R R F+ + L F N Y +E ++ELA + G+ +Q+ WF NKR + KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 74 ASGQ 77
G+
Sbjct: 62 NIGK 65
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 56.6 bits (136), Expect = 9e-13
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 15 KEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74
KR RT+ L+ F + + ++ +AN+LGL + +++WF N+R K K++
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
Query: 75 S 75
S
Sbjct: 67 S 67
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 55.9 bits (135), Expect = 1e-12
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 24 SGEQLSRLKVEFTE-NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
+ + + L+ FT ++ E+R + L+ +L + I+ WF+ +R + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 56.6 bits (136), Expect = 1e-12
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 18 RPRTAFSGEQLSRLKVEFTENRYLTERRRQELANE---------------LGLNEAQIKI 62
R + E L+ ++ F EN+Y E +R+E+AN + ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 63 WFQNKRAKIKKASG 76
WF N+R +IK+ +
Sbjct: 62 WFANRRKEIKRRAN 75
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 55.9 bits (135), Expect = 2e-12
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 23 FSGEQLSRLKVEFTENR---YLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75
F+ E + L+ F +N YL + + L L+ QIK W N+R K K +
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTIT 60
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 56.2 bits (135), Expect = 2e-12
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 17 KRPRTAFSGEQLSRLKVEF-TENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKAS 75
+ +Q+ L+ F N++ +A E GL E Q + WF+ + A+ +++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 76 G 76
G
Sbjct: 62 G 62
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 55.8 bits (134), Expect = 2e-12
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 8 SGKDKRSKEKRPRTAFSGEQLSRLKVEFTE----NRYLTERRRQELANELGLNEAQIKIW 63
+ KR RT F+ EQ ++ + + ++ E G+ +KIW
Sbjct: 9 NPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIW 68
Query: 64 FQNKRAKIKKA 74
N + +
Sbjct: 69 MHNNKNSGPSS 79
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 54.4 bits (131), Expect = 5e-12
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 18 RPRTAFSGEQLSRLKVEF-TENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72
+ E L+ F + +Y E+R + L+ +L + +I+ WF+++R + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 54.3 bits (130), Expect = 9e-12
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 14 SKEKRPRTAFSGEQLSRLKVEFTE-NRYLTERRRQELANELGLNEAQIKIWFQNKRAKIK 72
S R RT S E L L+ + Y + L+ +L L + I +FQN+R +K
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Query: 73 K 73
Sbjct: 65 H 65
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 52.6 bits (126), Expect = 3e-11
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
RT+ L+ F EN+ T +A +L + + I++WF N+R K K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 45.2 bits (106), Expect = 4e-08
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 21/75 (28%)
Query: 20 RTAFSGEQLSRLKVEFTENRYLTERRRQELANEL---------------------GLNEA 58
R + L + + ++ R+ L E + E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 59 QIKIWFQNKRAKIKK 73
++ WF N+R +
Sbjct: 61 RVYNWFANRRKEEAF 75
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 44.7 bits (105), Expect = 4e-08
Identities = 13/62 (20%), Positives = 22/62 (35%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKASG 76
+ + EQL L+ F + LT+ L + L +I WF K+
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 77 QK 78
+
Sbjct: 65 KM 66
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 40.5 bits (94), Expect = 2e-06
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 17 KRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQIKIWFQNKRAKIKK 73
+ EQL+ LK F + ++ Q+L GL +I WF + R +K
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 24.2 bits (51), Expect = 4.8
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 14/62 (22%)
Query: 1 PRSRRIKSGKDKRSKEKRPRTAFSGEQLSRLKVEFTENRYLTERRRQELANELGLNEAQI 60
R G+ ++ P A + T + RQ++ LGLN+ I
Sbjct: 158 FRPEYAALGQLRQRFPTLPFMALTA----------T----ADDTTRQDIVRLLGLNDPLI 203
Query: 61 KI 62
+I
Sbjct: 204 QI 205
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia
coli [TaxId: 562]}
Length = 68
Score = 22.7 bits (49), Expect = 7.8
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 39 RYLTERRRQELANELGLNEAQIKIWFQNKRAKIKKA 74
R L +E+A + ++ R I
Sbjct: 30 RELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 65
>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of
HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Length = 266
Score = 23.4 bits (50), Expect = 8.9
Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 43 ERRRQELANELGLNEAQIKIWFQNKRAKIKKASGQ-KNPLALQLMAQGLYNHSTV----- 96
R + LGL+ + + + A+G +N + + + ++ +
Sbjct: 14 AARLDHIGQLLGLSHDDVSLLANAGALPMDIANGMIENVIGTFELPYAVASNFQINGRDV 73
Query: 97 --PMSDEEMEMELSLLNKANSNNQN 119
P+ EE + + A N
Sbjct: 74 LVPLVVEEPSIVAAASYMAKLARAN 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.125 0.334
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 378,266
Number of extensions: 15527
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 52
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.0 bits)