BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4626
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 221/273 (80%), Positives = 249/273 (91%)
Query: 22 IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVV 81
+ G + + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TDVMFGGKQVV
Sbjct: 170 VTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFGGKQVV 229
Query: 82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141
+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKLNEVIR VD+V+T TG
Sbjct: 230 VCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTG 289
Query: 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIV 201
NKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKR+V
Sbjct: 290 NKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVRSQVDHVIWPDGKRVV 349
Query: 202 LLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
LLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASL
Sbjct: 350 LLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASL 409
Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
HLP+FDAHLTEL+D+QAKY+GLNK GPFKP+YY
Sbjct: 410 HLPSFDAHLTELADDQAKYLGLNKNGPFKPNYY 442
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/153 (67%), Positives = 121/153 (79%), Gaps = 10/153 (6%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
MDGF VVKLNEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRT
Sbjct: 266 MDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRT 325
Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPC 415
P+LTWE+VRSQVDHVIWPDGKR+VLLAEGRL+NLSCS++P+FV+SITA TQ +LI
Sbjct: 326 PELTWERVRSQVDHVIWPDGKRVVLLAEGRLLNLSCSTVPTFVLSITATTQ--ALALIEL 383
Query: 416 YHL---RFASNLAKYLLNSLTSSYTG---LPVF 442
Y+ R+ ++ YLL Y LP F
Sbjct: 384 YNAPEGRYKQDV--YLLPKKMDEYVASLHLPSF 414
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 82/102 (80%), Positives = 91/102 (89%), Gaps = 2/102 (1%)
Query: 442 FAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLT 499
FAW+GE+E+DFWWCID+CVN WQ NMILDDGGD THW+ KKYP +FK I+GIVEES+T
Sbjct: 112 FAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVT 171
Query: 500 GVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
GVHRLYQLSKAGKL VPAMNVNDSVTK KFDNLY CRESI+D
Sbjct: 172 GVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILD 213
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
M +++LRKRA +KPL A+IVGCTHI AQTA
Sbjct: 41 MSALISLRKRAQGEKPLAGAKIVGCTHITAQTA 73
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 220/278 (79%), Positives = 249/278 (89%)
Query: 15 KPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVM 74
K + + G + + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TD+M
Sbjct: 158 KGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMM 217
Query: 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134
FGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKLNEVIR VD
Sbjct: 218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVD 277
Query: 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIW 194
IV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIW
Sbjct: 278 IVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIW 337
Query: 195 PDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKM 254
PDGKRIVLLAEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKM
Sbjct: 338 PDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKM 397
Query: 255 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPS 292
DEYVASLHLPTFDAHLTEL+DEQAKY+GLNK GPFKP+
Sbjct: 398 DEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN 435
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/153 (67%), Positives = 121/153 (79%), Gaps = 10/153 (6%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
MDGF +VKLNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRT
Sbjct: 261 MDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRT 320
Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPC 415
P+LTWE+VRSQVDHVIWPDGKRIVLLAEGRL+NLSCS++P+FV+SITA TQ +LI
Sbjct: 321 PELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQ--ALALIEL 378
Query: 416 YHL---RFASNLAKYLLNSLTSSYTG---LPVF 442
Y+ R+ ++ YLL Y LP F
Sbjct: 379 YNAPEGRYKQDV--YLLPKKMDEYVASLHLPTF 409
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 88/107 (82%), Positives = 96/107 (89%), Gaps = 2/107 (1%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIV 494
+G PVFAW+GE+E+DFWWCID+CVN WQPNMILDDGGD THW+ KKYP MFK IKGIV
Sbjct: 102 SGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIV 161
Query: 495 EESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
EES+TGVHRLYQLSKAGKL VPAMNVNDSVTK KFDNLY CRESI+D
Sbjct: 162 EESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILD 208
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVN 45
MP +MALRKRA +KPL A+IVGCTHI AQTA T+ A+
Sbjct: 36 MPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQ 80
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 324 bits (830), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 155/287 (54%), Positives = 200/287 (69%), Gaps = 4/287 (1%)
Query: 9 KRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLK 68
KR K + G + G+L PA NVNDSVTK+KFDNLY CRES++D +K
Sbjct: 209 KRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIK 268
Query: 69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNE 128
R+TDVM GK V+ GYG+VGKGC QSL+GLG +++TEIDPICALQA M+G+ VV +
Sbjct: 269 RATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEY 328
Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
DI VTATGN +V+ +HM M++ +VCN+GH ++EIDV S R WE ++ Q
Sbjct: 329 AADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKPQ 386
Query: 189 VDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDV 247
VDH+I+PDGKR++LLAEGRLVNL C++ PSFV+S + Q LA IELF G Y + V
Sbjct: 387 VDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTR-GGEYANKV 445
Query: 248 YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
Y+LPK +DE VA LHL A L+ELSD+QA Y+G++KAGPFKP +Y
Sbjct: 446 YVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHY 492
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 79/113 (69%), Gaps = 3/113 (2%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
+M+G+ VV + DI VTATGN +V+ +HM M++ +VCN+GH ++EIDV S R
Sbjct: 317 AMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR 376
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
WE ++ QVDH+I+PDGKR++LLAEGRLVNL C++ PSFV+S + Q
Sbjct: 377 --QYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQ 427
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 79/143 (55%), Gaps = 38/143 (26%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWML------------- 480
G PVFA++GE+ +++W + N NMILDDGGDAT ++
Sbjct: 123 AGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIA 182
Query: 481 ----KKYPTMFKAI------------------KGIVEESLTGVHRLYQLSKAGKLTVPAM 518
++ +FK+I KG+ EE+ TGVHRLYQ+ K G+L PA
Sbjct: 183 RPTNEEEVALFKSIERHLEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAF 242
Query: 519 NVNDSVTKTKFDNLYMCRESIID 541
NVNDSVTK+KFDNLY CRES++D
Sbjct: 243 NVNDSVTKSKFDNLYGCRESLVD 265
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVN 45
MPG++ +R +PLK ARI G H+ QT T+ A+ +
Sbjct: 57 MPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKALGAD 101
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/294 (51%), Positives = 196/294 (66%), Gaps = 6/294 (2%)
Query: 2 PGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRE 61
PG ++ A K + G + G L PA+NVNDSVTK+KFDN Y C+E
Sbjct: 174 PGFFTKQRAA--IKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKE 231
Query: 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF 121
S++D ++R TDVM GK V+CGYG+VGKG QSL G G + +TE+DPICALQA MDGF
Sbjct: 232 SLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGF 291
Query: 122 SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 181
VV L++ T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR +L
Sbjct: 292 EVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR--NLK 349
Query: 182 WEKVRSQVDHVIWPDGKRIVLLAEGRLVNL-SCSSLPSFVVSITACTQALALIELFNAPS 240
W V+ QVD + +PDGKR++LL+EGRL+NL + + PSFV+S + Q L IELF
Sbjct: 350 WTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTD 409
Query: 241 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
YK++VY+LPK +DE VA LHL A LT LS+EQA Y+G+ GPFK +Y
Sbjct: 410 A-YKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHY 462
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
+MDGF VV L++ T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR
Sbjct: 287 AMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR 346
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNL-SCSSLPSFVVSITACTQ 406
+L W V+ QVD + +PDGKR++LL+EGRL+NL + + PSFV+S + Q
Sbjct: 347 --NLKWTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQ 397
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 82/144 (56%), Gaps = 40/144 (27%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNSW---QP-NMILDDGGDATHWML------------ 480
TG PVFA +GET E++W D+ + W +P NMILDDGGDAT ++L
Sbjct: 93 TGTPVFAVKGETLEEYWTYTDQ-IFQWPDGEPSNMILDDGGDATMYILIGARAEAGEDVL 151
Query: 481 ---------------KKY----PTMF----KAIKGIVEESLTGVHRLYQLSKAGKLTVPA 517
KK P F AIKG+ EE+ TGV+RLYQL K G L PA
Sbjct: 152 SNPQSEEEEVLFAQIKKRMAATPGFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPA 211
Query: 518 MNVNDSVTKTKFDNLYMCRESIID 541
+NVNDSVTK+KFDN Y C+ES++D
Sbjct: 212 INVNDSVTKSKFDNKYGCKESLVD 235
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+MA R+ G +PLK ARI G H+ QTA
Sbjct: 27 MPGLMAAREEFGKSQPLKGARISGSLHMTIQTA 59
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 283 bits (724), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/277 (50%), Positives = 192/277 (69%), Gaps = 6/277 (2%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ + GKLT+PAMNVNDSVTK+KFDNLY CRES++D +KR+TDVM GK +C
Sbjct: 158 GVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVC 217
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +L+G G + +TE+DPI ALQA M+G+ V+ + +V+ I VT TGN
Sbjct: 218 GYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGND 277
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++T EH +M++ +VCN+GH +TEI V L+ +V+ QVD +G+ I+LL
Sbjct: 278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTMANGRHIILL 337
Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRY----KSDVYLLPKKMDEY 257
AEGRLVNL C+S PSFV+S + C Q LA IEL+ N +G+Y K+ VY LPKK+DE
Sbjct: 338 AEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEK 397
Query: 258 VASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
VA+LHL A LT+L+ +QA+Y+ GPFKP +Y
Sbjct: 398 VAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHY 434
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 81/108 (75%), Gaps = 4/108 (3%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQ----PNMILDDGGDATHWMLKKYPTMFKAIKGI 493
G+PVFAW+GETEE++ WC+ + + + PNM+LDDGGD T+++L + + I G+
Sbjct: 92 GIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYGV 151
Query: 494 VEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
EE+ TGV LY+ + GKLT+PAMNVNDSVTK+KFDNLY CRES++D
Sbjct: 152 SEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVD 199
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P +M+G+ V+ + +V+ I VT TGN +++T EH +M++ +VCN+GH +TE
Sbjct: 244 PINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTE 303
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
I V L+ +V+ QVD +G+ I+LLAEGRLVNL C+S PSFV+S + C Q
Sbjct: 304 IQVAWLKANAKERVEVKPQVDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQ 363
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M LR+ G KPLK A+I GC H+ QTA
Sbjct: 25 MPGLMELRREYGPSKPLKGAKIAGCLHMTMQTA 57
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 273 bits (699), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/274 (48%), Positives = 187/274 (68%), Gaps = 3/274 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + +L A+NVND+VTK K+DN+Y CR S+ D L R+TD + GK VV+C
Sbjct: 204 GVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVIC 263
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC S+KGLG +YITEIDPICA+QA M+GF+VV L+E++ D +T TGN
Sbjct: 264 GYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNV 323
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL-RTPDLTWEKVRSQVDHVIWPDGKRIVL 202
+V+ EH+ KMKN VV N+GH + EI VN L + E V+ QVD + P+G +I++
Sbjct: 324 DVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIV 383
Query: 203 LAEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRYKSDVYLLPKKMDEYVAS 260
LA GRL+NL C++ P+FV+S + C Q A ++L+ N + +Y++ VYLLPK +DE VA
Sbjct: 384 LARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVAL 443
Query: 261 LHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
HL +A LTEL D Q +++G+NK+GPFK + Y
Sbjct: 444 YHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEY 477
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL-R 354
M+GF+VV L+E++ D +T TGN +V+ EH+ KMKN VV N+GH + EI VN L
Sbjct: 298 MEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
+ E V+ QVD + P+G +I++LA GRL+NL C++ P+FV+S + C Q
Sbjct: 358 YKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQ 410
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 48/155 (30%)
Query: 434 SSYTGLPVFAWRGETEEDFWWCIDKCVNSWQ------PNMILDDGGDATHWMLK------ 481
S+ + VFAW+ ET E++WWC++ + +W P+MI+DDGGDAT + K
Sbjct: 92 STLENVTVFAWKNETLEEYWWCVESAL-TWGDGDDNGPDMIVDDGGDATLLVHKGVEYEK 150
Query: 482 -----------------------------------KYPTMFKAIKGIVEESLTGVHRLYQ 506
K+ + K I G+ EE+ TGV RL +
Sbjct: 151 LYEEKNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKK 210
Query: 507 LSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
+ K +L A+NVND+VTK K+DN+Y CR S+ D
Sbjct: 211 MDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPD 245
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+ G D+PLKNA+I GC H+ + A
Sbjct: 28 MPGLMRIREEYGKDQPLKNAKITGCLHMTVECA 60
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 184/272 (67%), Gaps = 2/272 (0%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM GK V+
Sbjct: 159 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 218
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V ++E + +I VT TG
Sbjct: 219 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCV 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++ H ++MK+ +VCN+GH + EIDV L + ++ QVD + +G RI+LL
Sbjct: 279 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILL 338
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
AEGRLVNL C+ PSFV+S + Q +A IEL+ P +Y V+ LPKK+DE VA H
Sbjct: 339 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 397
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L + LT+L+++QA+Y+G+ GPFKP +Y
Sbjct: 398 LGKLNVKLTKLTEKQAQYLGMPINGPFKPDHY 429
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
G+PVFAW+GET+E++ WCI++ ++ NMILDDGGD T+ + K+P + I+GI E
Sbjct: 95 GIPVFAWKGETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGISE 154
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
E+ TGVH LY++ G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 155 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 200
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P +M+G+ V ++E + +I VT TG +++ H ++MK+ +VCN+GH + E
Sbjct: 245 PINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVE 304
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQ 406
IDV L + ++ QVD + +G RI+LLAEGRLVNL C+ PSFV+S + Q
Sbjct: 305 IDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQ 364
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+ KPLK ARI GC H+ +TA
Sbjct: 28 MPGLMRMREMYSASKPLKGARIAGCLHMTVETA 60
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 136/275 (49%), Positives = 185/275 (67%), Gaps = 4/275 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + A G L PA+NVNDSVTK+KFDNLY CR S+ D L R+TDVM GK V+
Sbjct: 212 GVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVA 271
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +LK G + +TEIDPICALQA M+G V+ L +V+ DI VT TGNK
Sbjct: 272 GYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNK 331
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPD-GKRIV 201
+++ +HM KMKN +VCN+GH + EID+ L T P + ++ Q D ++P+ I+
Sbjct: 332 DIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGII 391
Query: 202 LLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNA-PSGRYKSDVYLLPKKMDEYVA 259
+LAEGRL+NL C++ PSFV+S + Q +A +EL+N SG+Y+ VY+LPK +DE VA
Sbjct: 392 ILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVA 451
Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
+LHL A LT+LS +QA Y+ + GP+KP +Y
Sbjct: 452 ALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHY 486
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 46/146 (31%)
Query: 441 VFAWRGETEEDFWWCIDKCVNSWQP----NMILDDGGDATHWML---------------- 480
VFAW+GET +++WWC ++ ++ W P ++I+DDGGD T +
Sbjct: 109 VFAWKGETLQEYWWCTERALD-WGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFP 167
Query: 481 -------------------------KKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTV 515
K+Y M + G+ EE+ TGV RLYQ+ G L
Sbjct: 168 DPDSTDNAEFKIVLSIIKEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLF 227
Query: 516 PAMNVNDSVTKTKFDNLYMCRESIID 541
PA+NVNDSVTK+KFDNLY CR S+ D
Sbjct: 228 PAINVNDSVTKSKFDNLYGCRHSLPD 253
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 75/115 (65%), Gaps = 3/115 (2%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
+M+G V+ L +V+ DI VT TGNK+++ +HM KMKN +VCN+GH + EID+ L
Sbjct: 305 TMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLE 364
Query: 355 T-PDLTWEKVRSQVDHVIWPD-GKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
T P + ++ Q D ++P+ I++LAEGRL+NL C++ PSFV+S + Q
Sbjct: 365 THPGVKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQ 419
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVN 45
MPG+MA R G +P K A+I G H+ QTA T+ A+
Sbjct: 39 MPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAE 83
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 185/272 (68%), Gaps = 2/272 (0%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM GK V+
Sbjct: 163 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 222
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V ++E + +I VT TG
Sbjct: 223 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCI 282
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++ H ++MK+ +VCN+GH + EIDV L + ++ QVD +G+RI+LL
Sbjct: 283 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILL 342
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
AEGRLVNL C+ PSFV+S + Q +A IEL+ P +Y V+ LPKK+DE VA H
Sbjct: 343 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 401
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L + LT+L+++QA+Y+G++ GPFKP +Y
Sbjct: 402 LGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHY 433
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
G+PV+AW+GET+E++ WCI++ + NMILDDGGD T+ + KYP + I+GI E
Sbjct: 99 GIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISE 158
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
E+ TGVH LY++ G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 159 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 204
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P +M+G+ V ++E + +I VT TG +++ H ++MK+ +VCN+GH + E
Sbjct: 249 PINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVE 308
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQ 406
IDV L + ++ QVD +G+RI+LLAEGRLVNL C+ PSFV+S + Q
Sbjct: 309 IDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQ 368
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+R KPLK ARI GC H+ +TA
Sbjct: 32 MPGLMRMRERYSASKPLKGARIAGCLHMTVETA 64
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 133/272 (48%), Positives = 184/272 (67%), Gaps = 2/272 (0%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM GK V+
Sbjct: 159 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 218
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC Q+L+G G + ITEI+PI ALQA M+G+ V ++E + +I VT TG
Sbjct: 219 GYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCV 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++ H ++MK+ +VCN+GH + EIDV L + ++ QVD + +G RI+LL
Sbjct: 279 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILL 338
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
AEGRLVNL C+ PSFV+S + Q +A IEL+ P +Y V+ LPKK+DE VA H
Sbjct: 339 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 397
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L + LT+L+++QA+Y+G+ GPFKP +Y
Sbjct: 398 LGKLNVKLTKLTEKQAQYLGMPINGPFKPDHY 429
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 81/106 (76%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
G+PVFAW+GET+E++ WCI++ ++ NMILDDGGD T+ + K+P + I+GI E
Sbjct: 95 GIPVFAWKGETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGISE 154
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
E+ TGVH LY++ G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 155 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 200
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P +M+G+ V ++E + +I VT TG +++ H ++MK+ +VCN+GH + E
Sbjct: 245 PINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVE 304
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQ 406
IDV L + ++ QVD + +G RI+LLAEGRLVNL C+ PSFV+S + Q
Sbjct: 305 IDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQ 364
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+ KPLK ARI GC H+ +TA
Sbjct: 28 MPGLMRMREMYSASKPLKGARIAGCLHMTVETA 60
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 269 bits (687), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/272 (49%), Positives = 185/272 (68%), Gaps = 2/272 (0%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDVM GK V+
Sbjct: 160 GVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 219
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V ++E + +I VT TG
Sbjct: 220 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCI 279
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++ H ++MK+ +VCN+GH + EIDV L + ++ QVD +G+RI+LL
Sbjct: 280 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILL 339
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
AEGRLVNL C+ PSFV+S + Q +A IEL+ P +Y V+ LPKK+DE VA H
Sbjct: 340 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 398
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L + LT+L+++QA+Y+G++ GPFKP +Y
Sbjct: 399 LGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHY 430
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
G+PV+AW+GET+E++ WCI++ + NMILDDGGD T+ + KYP + I+GI E
Sbjct: 96 GIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISE 155
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
E+ TGVH LY++ G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 156 ETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLID 201
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P +M+G+ V ++E + +I VT TG +++ H ++MK+ +VCN+GH + E
Sbjct: 246 PINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVE 305
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQ 406
IDV L + ++ QVD +G+RI+LLAEGRLVNL C+ PSFV+S + Q
Sbjct: 306 IDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQ 365
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+R KPLK ARI GC H+ +TA
Sbjct: 29 MPGLMRMRERYSASKPLKGARIAGCLHMTVETA 61
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 133/272 (48%), Positives = 183/272 (67%), Gaps = 2/272 (0%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ A G L VPA+NVNDSVT +KFDNLY CRES+ID +KR+TDVM GK V+
Sbjct: 159 GVHNLYKMMANGILKVPAINVNDSVTNSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA 218
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC Q+L+G G + ITEIDPI ALQA M+G+ V ++E + +I VT TG
Sbjct: 219 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCV 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++ H ++MK+ +VCN+GH + EIDV L + ++ QVD + +G RI+LL
Sbjct: 279 DIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILL 338
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
AEGRLVNL C+ PSFV+S + Q +A IEL+ P +Y V+ LPKK+DE VA H
Sbjct: 339 AEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 397
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L + LT+L+++QA+Y+G+ GPFKP +Y
Sbjct: 398 LGKLNVKLTKLTEKQAQYLGMPINGPFKPDHY 429
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
G+PVFAW+GET+E++ WCI++ ++ NMILDDGGD T+ + K+P + I+GI E
Sbjct: 95 GIPVFAWKGETDEEYLWCIEQTLHFKDGPLNMILDDGGDLTNLIHTKHPQLLSGIRGISE 154
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
E+ TGVH LY++ G L VPA+NVNDSVT +KFDNLY CRES+ID
Sbjct: 155 ETTTGVHNLYKMMANGILKVPAINVNDSVTNSKFDNLYGCRESLID 200
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P +M+G+ V ++E + +I VT TG +++ H ++MK+ +VCN+GH + E
Sbjct: 245 PINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVE 304
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQ 406
IDV L + ++ QVD + +G RI+LLAEGRLVNL C+ PSFV+S + Q
Sbjct: 305 IDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQ 364
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+ KPLK ARI GC H+ +TA
Sbjct: 28 MPGLMRMREMYSASKPLKGARIAGCLHMTVETA 60
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 185/273 (67%), Gaps = 3/273 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + AAG L PA+NVNDSVTK+KFDN Y R S+ID + R TD + GGK+V++C
Sbjct: 221 GVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLIC 280
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +++KG G + +TEIDPI ALQA M+GF VV + E I DIVVTATGNK
Sbjct: 281 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNK 340
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVL 202
+++ EH+ MK+ ++ N+GH + EID+ L T V+ QVD + D G+ I++
Sbjct: 341 DIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIV 400
Query: 203 LAEGRLVNL-SCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
L+EGRL+NL + + PSFV+S + Q +A IEL+ + Y ++VY LPK +DE VA +
Sbjct: 401 LSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTK-NDEYDNEVYRLPKHLDEKVARI 459
Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
H+ HLT+L+ EQA+Y+G++ GP+KP +Y
Sbjct: 460 HVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHY 492
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 79/145 (54%), Gaps = 41/145 (28%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQP----NMILDDGGDATHWMLK------------ 481
G+PVFAW+GET E++WW ++ + P NMILDDGGDAT +L+
Sbjct: 118 GVPVFAWKGETLEEYWWAAEQMLTWPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPP 177
Query: 482 -------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVP 516
K+ + +++KG+ EE+ TGV RLYQ + AG L P
Sbjct: 178 AEEDDPAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFP 237
Query: 517 AMNVNDSVTKTKFDNLYMCRESIID 541
A+NVNDSVTK+KFDN Y R S+ID
Sbjct: 238 AINVNDSVTKSKFDNKYGTRHSLID 262
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 277 QAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGC 336
Q + + + P M+GF VV + E I DIVVTATGNK+++ EH+ MK+
Sbjct: 296 QGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHA 355
Query: 337 VVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVLLAEGRLVNL-SCSSL 394
++ N+GH + EID+ L T V+ QVD + D G+ I++L+EGRL+NL + +
Sbjct: 356 ILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGH 415
Query: 395 PSFVVSITACTQ 406
PSFV+S + Q
Sbjct: 416 PSFVMSNSFANQ 427
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M+LR+ + +PLK ARI G H+ QTA
Sbjct: 42 MPGLMSLRREYAEVQPLKGARISGSLHMTVQTA 74
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 185/273 (67%), Gaps = 3/273 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + AAG L PA+NVNDSVTK+KFDN Y R S+ID + R TD + GGK+V++C
Sbjct: 222 GVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLIC 281
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +++KG G + +TEIDPI ALQA M+GF VV + E I DIVVTATGNK
Sbjct: 282 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNK 341
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVL 202
+++ EH+ MK+ ++ N+GH + EID+ L T V+ QVD + D G+ I++
Sbjct: 342 DIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIV 401
Query: 203 LAEGRLVNL-SCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
L+EGRL+NL + + PSFV+S + Q +A IEL+ + Y ++VY LPK +DE VA +
Sbjct: 402 LSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTK-NDEYDNEVYRLPKHLDEKVARI 460
Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
H+ HLT+L+ EQA+Y+G++ GP+KP +Y
Sbjct: 461 HVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHY 493
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/145 (40%), Positives = 79/145 (54%), Gaps = 41/145 (28%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVNSWQP----NMILDDGGDATHWMLK------------ 481
G+PVFAW+GET E++WW ++ + P NMILDDGGDAT +L+
Sbjct: 119 GVPVFAWKGETLEEYWWAAEQMLTWPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPP 178
Query: 482 -------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVP 516
K+ + +++KG+ EE+ TGV RLYQ + AG L P
Sbjct: 179 AEEDDPAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFP 238
Query: 517 AMNVNDSVTKTKFDNLYMCRESIID 541
A+NVNDSVTK+KFDN Y R S+ID
Sbjct: 239 AINVNDSVTKSKFDNKYGTRHSLID 263
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 277 QAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGC 336
Q + + + P M+GF VV + E I DIVVTATGNK+++ EH+ MK+
Sbjct: 297 QGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHA 356
Query: 337 VVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVLLAEGRLVNL-SCSSL 394
++ N+GH + EID+ L T V+ QVD + D G+ I++L+EGRL+NL + +
Sbjct: 357 ILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGH 416
Query: 395 PSFVVSITACTQ 406
PSFV+S + Q
Sbjct: 417 PSFVMSNSFANQ 428
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M+LR+ + +PLK ARI G H+ QTA
Sbjct: 43 MPGLMSLRREYAEVQPLKGARISGSLHMTVQTA 75
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 257 bits (657), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 131/272 (48%), Positives = 178/272 (65%), Gaps = 2/272 (0%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ A G L VPA+NVNDSVTK+KFDNLY CRES+ID +KR+TDV GK V+
Sbjct: 160 GVHNLYKXXANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVXIAGKVAVVA 219
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC Q+L+G G + ITEIDPI ALQA +G+ V +E + +I VT TG
Sbjct: 220 GYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTTXDEACQEGNIFVTTTGCI 279
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++ H ++ K+ +VCN+GH + EIDV L + ++ QVD +G+RI+LL
Sbjct: 280 DIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILL 339
Query: 204 AEGRLVNLSCS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
AEGRLVNL C+ PSFV S + Q A IEL+ P +Y V+ LPKK+DE VA H
Sbjct: 340 AEGRLVNLGCAXGHPSFVXSNSFTNQVXAQIELWTHPD-KYPVGVHFLPKKLDEAVAEAH 398
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L + LT+L+++QA+Y+G + GPFKP +Y
Sbjct: 399 LGKLNVKLTKLTEKQAQYLGXSCDGPFKPDHY 430
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 78/106 (73%), Gaps = 2/106 (1%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVE 495
G+PV+AW+GET+E++ WCI++ + N ILDDGGD T+ + KYP + I+GI E
Sbjct: 96 GIPVYAWKGETDEEYLWCIEQTLYFKDGPLNXILDDGGDLTNLIHTKYPQLLPGIRGISE 155
Query: 496 ESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
E+ TGVH LY+ G L VPA+NVNDSVTK+KFDNLY CRES+ID
Sbjct: 156 ETTTGVHNLYKXXANGILKVPAINVNDSVTKSKFDNLYGCRESLID 201
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P + +G+ V +E + +I VT TG +++ H ++ K+ +VCN+GH + E
Sbjct: 246 PINALQAAXEGYEVTTXDEACQEGNIFVTTTGCIDIILGRHFEQXKDDAIVCNIGHFDVE 305
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQ 406
IDV L + ++ QVD +G+RI+LLAEGRLVNL C+ PSFV S + Q
Sbjct: 306 IDVKWLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCAXGHPSFVXSNSFTNQ 365
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 2 PGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
PG+ R+R KPLK ARI GC H +TA
Sbjct: 30 PGLXRXRERYSASKPLKGARIAGCLHXTVETA 61
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 256 bits (655), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 184/277 (66%), Gaps = 6/277 (2%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ + + G L + A+NVNDSVTK+KFDNLY CRES++D +KR+TDVM GK +C
Sbjct: 159 GVKNLYKRLSKGNLPISAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTCCVC 218
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +L+ G + +TE+DPI ALQA M+G+ V + +V+ I VT TGN
Sbjct: 219 GYGDVGKGCAAALRAFGARVVVTEVDPINALQASMEGYQVALVEDVMADAHIFVTTTGND 278
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++T +H M++ +VCN+GH +TEI V L +++ QVD +G+ I+LL
Sbjct: 279 DIITSDHFPHMRDDAIVCNIGHFDTEIQVGWLEANAKEHVEIKPQVDRYTMENGRHIILL 338
Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRY----KSDVYLLPKKMDEY 257
A+GRLVNL C+S PSFV+S + Q LA IEL+ N +G+Y K+ V+ LPK +DE
Sbjct: 339 AKGRLVNLGCASGHPSFVMSNSFTNQVLAQIELWSNRDNGKYPRGDKAGVFFLPKALDEK 398
Query: 258 VASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
VA+LHL A LT+L+ +QA+Y+ GPFKP +Y
Sbjct: 399 VAALHLAHVGAKLTKLTPKQAEYINCPVNGPFKPDHY 435
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 4/109 (3%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNSWQ----PNMILDDGGDATHWMLKKYPTMFKAIKG 492
TG+PVFAW+GET+E++ WCI + V + PNMILDDGGD T+ ++ +YP + I G
Sbjct: 92 TGVPVFAWKGETDEEYEWCIAQTVKGFSGDGLPNMILDDGGDLTNLVIDRYPELVPKIFG 151
Query: 493 IVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
I EE+ TGV LY+ G L + A+NVNDSVTK+KFDNLY CRES++D
Sbjct: 152 ISEETTTGVKNLYKRLSKGNLPISAINVNDSVTKSKFDNLYGCRESLVD 200
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 1/120 (0%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P SM+G+ V + +V+ I VT TGN +++T +H M++ +VCN+GH +TE
Sbjct: 245 PINALQASMEGYQVALVEDVMADAHIFVTTTGNDDIITSDHFPHMRDDAIVCNIGHFDTE 304
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
I V L +++ QVD +G+ I+LLA+GRLVNL C+S PSFV+S + Q
Sbjct: 305 IQVGWLEANAKEHVEIKPQVDRYTMENGRHIILLAKGRLVNLGCASGHPSFVMSNSFTNQ 364
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
MPG+M LR+ G +PLK A+I GC H+ QTA T+ A+
Sbjct: 26 MPGLMELRREYGPSQPLKGAKIAGCLHMTVQTAVLIETLKAL 67
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 139
V + G G +G+ Q G+G + ++ I ++ D + V L+EV+ DI+
Sbjct: 149 VGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIE---DYCTQVSLDEVLEKSDIITIH 205
Query: 140 T----GNKNVVTREHMDKMKNGCVVCN 162
N VVTR+ + KMK+G ++ N
Sbjct: 206 APYIKENGAVVTRDFLKKMKDGAILVN 232
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 302 VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 340
V L+EV+ DI+ N VVTR+ + KMK+G ++ N
Sbjct: 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVN 232
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATG 319
SLH FDA++ D+ Y G KA YS D SVV +N+ V + T
Sbjct: 650 SLHWQLFDAYM----DQNGAYYGAKKANEPLHIQYSHDNRSVVVINQTSNAVSGLTATTK 705
Query: 320 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350
N+ E K G V +G T + V
Sbjct: 706 LYNLDGTEKYSNTKTGLSVGALGAKATAVTV 736
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATG 319
SLH FDA++ D+ Y G KA YS D SVV +N+ V + T
Sbjct: 650 SLHWQLFDAYM----DQNGAYYGAKKANEPLHIQYSHDNRSVVVINQTSNAVSGLTATTK 705
Query: 320 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350
N+ E K G V +G T + V
Sbjct: 706 LYNLDGTEKYSNTKTGLSVGALGAKATAVTV 736
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATG 319
SLH FDA++ D+ Y G KA YS D SVV +N+ V + T
Sbjct: 650 SLHWQLFDAYM----DQNGAYYGAKKANEPLHIQYSHDNRSVVVINQTSNAVSGLTATTK 705
Query: 320 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350
N+ E K G V +G T + V
Sbjct: 706 LYNLDGTEKYSNTKTGLSVGALGAKATAVTV 736
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATG 319
SLH FDA++ D+ Y G KA YS D SVV +N+ V + T
Sbjct: 650 SLHWQLFDAYM----DQNGAYYGAKKANEPLHIQYSHDNRSVVVINQTSNAVSGLTATTK 705
Query: 320 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350
N+ E K G V +G T + V
Sbjct: 706 LYNLDGTEKYSNTKTGLSVGALGAKATAVTV 736
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135
GK + G G +GK Q LK GC ++Y + L+ V LNE++ D+
Sbjct: 170 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 229
Query: 136 VVT----ATGNKNVVTREHMDKMKNGCVVCN 162
+V + + +E + K+K G ++ N
Sbjct: 230 IVINMPLTEKTRGMFNKELIGKLKKGVLIVN 260
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135
GK + G G +GK Q LK GC ++Y + L+ V LNE++ D+
Sbjct: 164 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDV 223
Query: 136 VVT----ATGNKNVVTREHMDKMKNGCVVCN 162
+V + + +E + K+K G ++ N
Sbjct: 224 IVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF--SVVKLNEV 129
D GK V + G G V C+ L G + IT+I+ A+Q +D F + V +NE+
Sbjct: 168 DDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINE-EAVQRAVDAFGATAVGINEI 226
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
Length = 215
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 250 LPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSM---DGFSVV 302
+P++MD+ + SLHL D+ L ++ DE K +G+ +G F S + GF VV
Sbjct: 1 MPEEMDKPLISLHLVDSDSSLAKVPDEAPK-VGILGSGDFARSLATRLVGSGFKVV 55
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136
GK++ + GYG +G + LG +Y +I+ L + V L++++ D+V
Sbjct: 151 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG---NATQVQHLSDLLNMSDVV 207
Query: 137 VTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 175
KN++ + + MK G ++ N T +D+ +L
Sbjct: 208 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRG-TVVDIPAL 249
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136
GK++ + GYG +G + LG +Y +I+ L + V L++++ D+V
Sbjct: 151 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG---NATQVQHLSDLLNMSDVV 207
Query: 137 VTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 175
KN++ + + MK G ++ N T +D+ +L
Sbjct: 208 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRG-TVVDIPAL 249
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 105 ITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMD 152
+T+++ + + ++ VKLN IR VD++ +++ RE++D
Sbjct: 551 LTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLIKKENDGVDIINREYLD 598
>pdb|1YMY|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YMY|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12
pdb|1YRR|A Chain A, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|1YRR|B Chain B, Crystal Structure Of The N-Acetylglucosamine-6-Phosphate
Deacetylase From Escherichia Coli K12 At 2.0 A
Resolution
pdb|2P50|A Chain A, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|B Chain B, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|C Chain C, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
pdb|2P50|D Chain D, Crystal Structure Of N-Acetyl-D-Glucosamine-6-Phosphate
Deacetylase Liganded With Zn
Length = 382
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 254 MDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDI 313
M EY+A HL + ++ L K G P++ ++V + D+
Sbjct: 114 MREYLAKHPNQALGLHL------EGPWLNLVKKGTHNPNFVRKPDAALVDF--LCENADV 165
Query: 314 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI 348
+ T +V E + K+ N +V + GHSN +
Sbjct: 166 ITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATL 200
>pdb|2P53|A Chain A, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
pdb|2P53|B Chain B, Crystal Structure Of N-acetyl-d-glucosamine-6-phosphate
Deacetylase D273n Mutant Complexed With N-acetyl
Phosphonamidate-d-glucosamine-6- Phosphate
Length = 382
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 254 MDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDI 313
M EY+A HL + ++ L K G P++ ++V + D+
Sbjct: 114 MREYLAKHPNQALGLHL------EGPWLNLVKKGTHNPNFVRKPDAALVDF--LCENADV 165
Query: 314 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI 348
+ T +V E + K+ N +V + GHSN +
Sbjct: 166 ITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATL 200
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 8/103 (7%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136
GK++ + GYG +G + LG +Y +I+ L + V L++++ D+V
Sbjct: 150 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG---NATQVQHLSDLLNMSDVV 206
Query: 137 VTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 175
KN++ + + MK G ++ N T +D+ +L
Sbjct: 207 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRG-TVVDIPAL 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,005,727
Number of Sequences: 62578
Number of extensions: 661406
Number of successful extensions: 1802
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 103
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)