Query psy4626
Match_columns 542
No_of_seqs 562 out of 3301
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:38:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0499 SAM1 S-adenosylhomocys 100.0 9E-76 2E-80 595.7 21.7 287 1-288 27-420 (420)
2 KOG1370|consensus 100.0 3.6E-72 7.7E-77 557.3 21.0 296 1-296 30-434 (434)
3 PLN02494 adenosylhomocysteinas 100.0 4.8E-64 1E-68 535.7 25.6 259 36-295 213-476 (477)
4 TIGR00936 ahcY adenosylhomocys 100.0 2.4E-62 5.2E-67 519.0 23.7 287 1-288 14-406 (406)
5 PTZ00075 Adenosylhomocysteinas 100.0 4.6E-61 1E-65 514.1 27.8 261 35-296 212-476 (476)
6 PRK05476 S-adenosyl-L-homocyst 100.0 4.1E-61 8.8E-66 512.2 24.8 289 1-290 30-425 (425)
7 cd00401 AdoHcyase S-adenosyl-L 100.0 2.4E-57 5.1E-62 482.2 22.3 287 1-288 18-413 (413)
8 COG0499 SAM1 S-adenosylhomocys 100.0 3.8E-56 8.1E-61 452.5 12.2 299 76-432 68-398 (420)
9 KOG1370|consensus 100.0 1.5E-47 3.3E-52 381.4 7.3 105 437-541 96-202 (434)
10 PLN02494 adenosylhomocysteinas 100.0 2.7E-40 5.8E-45 353.5 11.9 365 1-433 28-448 (477)
11 PRK05476 S-adenosyl-L-homocyst 100.0 3E-40 6.4E-45 352.3 8.1 165 269-433 222-402 (425)
12 TIGR00936 ahcY adenosylhomocys 100.0 2.6E-40 5.5E-45 351.0 7.0 299 76-433 55-385 (406)
13 PTZ00075 Adenosylhomocysteinas 100.0 4.4E-39 9.6E-44 345.0 8.1 364 1-433 27-447 (476)
14 PF00670 AdoHcyase_NAD: S-aden 100.0 8.8E-37 1.9E-41 285.4 16.1 160 55-214 1-160 (162)
15 PF05221 AdoHcyase: S-adenosyl 100.0 6.6E-38 1.4E-42 311.6 6.5 95 436-530 90-187 (268)
16 PF00670 AdoHcyase_NAD: S-aden 100.0 9.2E-38 2E-42 292.0 4.7 125 269-393 33-161 (162)
17 cd00401 AdoHcyase S-adenosyl-L 100.0 7.7E-37 1.7E-41 325.3 9.4 104 437-541 84-190 (413)
18 PF05221 AdoHcyase: S-adenosyl 100.0 6.8E-33 1.5E-37 275.8 8.2 227 1-294 25-267 (268)
19 COG0111 SerA Phosphoglycerate 99.7 2.1E-16 4.6E-21 164.6 17.4 206 24-239 76-308 (324)
20 COG1052 LdhA Lactate dehydroge 99.7 1.1E-15 2.4E-20 159.2 17.3 161 18-180 65-255 (324)
21 PF02826 2-Hacid_dh_C: D-isome 99.6 7.9E-16 1.7E-20 147.2 11.9 110 70-179 29-145 (178)
22 PRK08410 2-hydroxyacid dehydro 99.6 8.7E-15 1.9E-19 151.9 17.0 104 73-180 141-251 (311)
23 PRK15409 bifunctional glyoxyla 99.6 1.1E-14 2.4E-19 151.8 17.8 107 72-179 140-254 (323)
24 PRK06487 glycerate dehydrogena 99.6 5.1E-14 1.1E-18 146.6 16.3 101 73-179 144-251 (317)
25 PRK06932 glycerate dehydrogena 99.5 7.6E-14 1.7E-18 145.1 15.6 102 73-179 143-251 (314)
26 PLN02928 oxidoreductase family 99.5 1.5E-13 3.3E-18 144.7 18.0 107 73-179 155-280 (347)
27 PLN03139 formate dehydrogenase 99.5 1.1E-13 2.4E-18 147.2 16.9 156 24-180 131-310 (386)
28 PRK07574 formate dehydrogenase 99.5 1.5E-13 3.3E-18 146.2 16.6 107 73-179 188-302 (385)
29 PRK13243 glyoxylate reductase; 99.5 3.7E-13 8E-18 141.0 18.4 106 73-179 146-258 (333)
30 PLN02306 hydroxypyruvate reduc 99.5 3E-13 6.5E-18 144.2 17.5 155 24-179 96-290 (386)
31 PRK11790 D-3-phosphoglycerate 99.5 3.8E-13 8.2E-18 144.6 17.9 151 24-180 85-258 (409)
32 TIGR01327 PGDH D-3-phosphoglyc 99.5 2.5E-13 5.3E-18 150.4 16.3 153 24-179 72-247 (525)
33 KOG0068|consensus 99.5 4.5E-13 9.7E-18 137.1 15.8 161 16-178 72-253 (406)
34 PRK15438 erythronate-4-phospha 99.5 1.9E-13 4E-18 145.1 13.6 106 69-178 108-224 (378)
35 KOG0069|consensus 99.5 4.8E-13 1E-17 138.9 15.6 165 24-189 94-286 (336)
36 PRK00257 erythronate-4-phospha 99.5 1.2E-13 2.7E-18 146.7 11.3 106 69-178 108-224 (381)
37 PRK13581 D-3-phosphoglycerate 99.5 4.8E-13 1E-17 148.1 16.4 107 72-179 135-248 (526)
38 PRK15469 ghrA bifunctional gly 99.4 1.7E-12 3.6E-17 135.0 12.2 106 73-179 132-244 (312)
39 PRK06436 glycerate dehydrogena 99.3 8E-12 1.7E-16 129.4 9.9 100 73-178 118-226 (303)
40 PRK12480 D-lactate dehydrogena 99.3 2.9E-11 6.3E-16 126.7 13.8 152 24-179 79-252 (330)
41 TIGR02853 spore_dpaA dipicolin 99.2 5.2E-11 1.1E-15 122.5 12.8 162 14-177 89-253 (287)
42 PRK08605 D-lactate dehydrogena 99.2 1.7E-10 3.8E-15 120.9 13.7 105 72-179 141-254 (332)
43 COG0111 SerA Phosphoglycerate 99.2 2.3E-10 5E-15 119.5 13.6 189 127-354 40-244 (324)
44 PRK08410 2-hydroxyacid dehydro 99.2 4.1E-10 8.8E-15 117.1 14.8 197 128-355 38-244 (311)
45 COG1052 LdhA Lactate dehydroge 99.2 1.1E-10 2.3E-15 121.9 10.4 224 82-355 5-248 (324)
46 KOG0024|consensus 99.1 2.8E-10 6.1E-15 116.7 7.8 146 63-215 158-323 (354)
47 PRK08306 dipicolinate synthase 99.0 5.6E-09 1.2E-13 108.0 15.2 100 72-172 147-249 (296)
48 COG1063 Tdh Threonine dehydrog 99.0 5.5E-10 1.2E-14 117.8 7.8 138 75-215 167-321 (350)
49 PRK15409 bifunctional glyoxyla 99.0 3.9E-09 8.4E-14 110.4 12.6 195 128-355 41-248 (323)
50 KOG0068|consensus 98.9 4E-09 8.6E-14 108.5 9.6 225 85-355 12-248 (406)
51 PRK06487 glycerate dehydrogena 98.9 4.4E-09 9.5E-14 109.7 10.1 193 127-354 40-244 (317)
52 PRK06932 glycerate dehydrogena 98.9 5.6E-09 1.2E-13 108.8 10.6 194 128-355 40-245 (314)
53 PRK13403 ketol-acid reductoiso 98.9 3.7E-09 8.1E-14 109.6 9.1 94 74-167 13-109 (335)
54 PRK11790 D-3-phosphoglycerate 98.9 1.3E-08 2.9E-13 109.7 12.4 185 128-354 49-250 (409)
55 PLN03139 formate dehydrogenase 98.9 1.1E-08 2.4E-13 109.2 10.8 224 90-355 65-303 (386)
56 PRK09424 pntA NAD(P) transhydr 98.9 7E-09 1.5E-13 114.1 9.4 92 74-165 162-286 (509)
57 PRK15438 erythronate-4-phospha 98.8 5.3E-08 1.1E-12 103.8 15.2 172 128-354 33-218 (378)
58 PRK07574 formate dehydrogenase 98.8 4.8E-08 1E-12 104.4 12.0 228 86-355 56-296 (385)
59 PRK00257 erythronate-4-phospha 98.7 2.1E-07 4.5E-12 99.5 15.3 172 128-354 33-218 (381)
60 PLN02928 oxidoreductase family 98.7 5.4E-08 1.2E-12 102.8 10.8 188 128-355 57-274 (347)
61 PLN02306 hydroxypyruvate reduc 98.7 1.5E-07 3.3E-12 100.7 13.4 194 128-353 57-282 (386)
62 TIGR00561 pntA NAD(P) transhyd 98.7 8.2E-08 1.8E-12 105.6 10.1 91 75-165 162-285 (511)
63 PRK09880 L-idonate 5-dehydroge 98.7 9E-08 1.9E-12 99.9 9.8 119 63-184 158-288 (343)
64 TIGR03366 HpnZ_proposed putati 98.6 2.6E-07 5.6E-12 93.9 12.8 119 62-183 108-241 (280)
65 PRK13243 glyoxylate reductase; 98.6 1.5E-07 3.2E-12 99.0 11.2 197 128-354 41-251 (333)
66 TIGR00518 alaDH alanine dehydr 98.6 1.1E-07 2.4E-12 101.3 9.8 92 75-166 165-269 (370)
67 TIGR01327 PGDH D-3-phosphoglyc 98.6 1.6E-07 3.4E-12 104.5 11.1 192 128-353 36-239 (525)
68 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 6.9E-07 1.5E-11 87.4 12.0 93 72-166 23-117 (200)
69 PRK13581 D-3-phosphoglycerate 98.5 4.5E-07 9.9E-12 100.8 11.5 192 128-353 38-240 (526)
70 PF07991 IlvN: Acetohydroxy ac 98.5 2.8E-07 6E-12 86.9 7.4 90 75-164 2-95 (165)
71 PRK14175 bifunctional 5,10-met 98.5 1.3E-06 2.8E-11 89.8 11.9 92 59-167 141-233 (286)
72 PRK14189 bifunctional 5,10-met 98.4 6.7E-07 1.5E-11 91.8 9.3 91 59-166 141-232 (285)
73 COG0686 Ald Alanine dehydrogen 98.4 4.7E-07 1E-11 92.8 7.9 89 76-164 167-268 (371)
74 PRK08306 dipicolinate synthase 98.4 3.4E-06 7.3E-11 87.4 14.3 225 77-350 2-249 (296)
75 COG1064 AdhP Zn-dependent alco 98.4 7.7E-07 1.7E-11 93.2 9.5 121 61-185 153-284 (339)
76 PF02826 2-Hacid_dh_C: D-isome 98.4 9.7E-08 2.1E-12 91.4 2.3 87 260-346 33-131 (178)
77 PRK14192 bifunctional 5,10-met 98.4 1.7E-06 3.6E-11 89.1 11.2 92 59-167 142-234 (283)
78 TIGR02853 spore_dpaA dipicolin 98.4 4.3E-06 9.2E-11 86.3 13.7 227 77-355 1-253 (287)
79 TIGR01202 bchC 2-desacetyl-2-h 98.4 1.3E-06 2.8E-11 90.1 9.4 100 62-167 133-234 (308)
80 PF02882 THF_DHG_CYH_C: Tetrah 98.4 3E-06 6.4E-11 80.2 10.7 92 58-166 18-110 (160)
81 PLN02178 cinnamyl-alcohol dehy 98.4 3.4E-06 7.3E-11 89.8 12.5 144 62-210 164-318 (375)
82 PF03446 NAD_binding_2: NAD bi 98.3 1.4E-06 3.1E-11 82.1 8.1 90 78-167 2-97 (163)
83 cd08230 glucose_DH Glucose deh 98.3 1.8E-06 3.9E-11 90.5 9.4 92 75-167 171-272 (355)
84 cd08281 liver_ADH_like1 Zinc-d 98.3 2.1E-06 4.6E-11 90.7 10.0 111 74-185 189-315 (371)
85 cd01080 NAD_bind_m-THF_DH_Cycl 98.3 3.9E-06 8.6E-11 80.0 10.9 79 73-167 40-119 (168)
86 PRK14194 bifunctional 5,10-met 98.3 2.5E-06 5.5E-11 88.2 9.7 90 60-166 143-233 (301)
87 PRK05479 ketol-acid reductoiso 98.3 1.8E-06 3.8E-11 90.6 8.7 92 74-166 14-109 (330)
88 COG1062 AdhC Zn-dependent alco 98.3 1.4E-06 3E-11 90.5 7.5 139 73-215 182-339 (366)
89 PRK14191 bifunctional 5,10-met 98.3 4.7E-06 1E-10 85.6 11.1 90 60-166 141-231 (285)
90 PLN02586 probable cinnamyl alc 98.3 6.6E-06 1.4E-10 86.9 12.5 113 62-176 170-292 (360)
91 PRK10792 bifunctional 5,10-met 98.3 5.2E-06 1.1E-10 85.3 11.2 91 59-166 142-233 (285)
92 PRK14176 bifunctional 5,10-met 98.3 4.2E-06 9E-11 86.0 10.5 91 59-166 147-238 (287)
93 PF01262 AlaDh_PNT_C: Alanine 98.3 4.4E-06 9.6E-11 79.2 9.8 91 74-164 17-139 (168)
94 cd08237 ribitol-5-phosphate_DH 98.3 7E-06 1.5E-10 85.9 11.9 108 75-184 162-278 (341)
95 TIGR02822 adh_fam_2 zinc-bindi 98.2 8.7E-06 1.9E-10 84.9 11.9 119 62-183 153-276 (329)
96 cd05212 NAD_bind_m-THF_DH_Cycl 98.2 9.9E-06 2.1E-10 75.1 10.1 91 60-167 12-103 (140)
97 PRK14188 bifunctional 5,10-met 98.2 6.7E-06 1.4E-10 85.1 9.8 89 60-166 142-232 (296)
98 PRK12480 D-lactate dehydrogena 98.2 1E-05 2.3E-10 85.0 11.3 186 128-355 41-246 (330)
99 cd01079 NAD_bind_m-THF_DH NAD 98.2 9.8E-06 2.1E-10 78.7 9.6 91 73-166 58-158 (197)
100 PLN02827 Alcohol dehydrogenase 98.1 5.8E-06 1.3E-10 87.9 8.6 92 74-166 191-297 (378)
101 PRK05225 ketol-acid reductoiso 98.1 2.1E-06 4.6E-11 92.6 5.1 90 74-163 33-130 (487)
102 KOG0022|consensus 98.1 3.6E-06 7.8E-11 86.5 6.3 93 73-166 189-296 (375)
103 PRK14190 bifunctional 5,10-met 98.1 1.2E-05 2.7E-10 82.6 10.2 90 60-166 142-232 (284)
104 cd08239 THR_DH_like L-threonin 98.1 1.2E-05 2.6E-10 83.3 10.2 104 61-167 150-265 (339)
105 PRK06436 glycerate dehydrogena 98.1 1.8E-05 3.9E-10 82.3 11.1 91 260-355 119-221 (303)
106 PF01488 Shikimate_DH: Shikima 98.1 1.4E-05 2.9E-10 73.3 9.0 93 74-166 9-111 (135)
107 PRK14186 bifunctional 5,10-met 98.1 2.1E-05 4.5E-10 81.4 11.4 90 60-166 142-232 (297)
108 TIGR03201 dearomat_had 6-hydro 98.1 1.8E-05 3.8E-10 82.9 11.2 109 64-175 156-285 (349)
109 PRK14183 bifunctional 5,10-met 98.1 1.5E-05 3.3E-10 81.7 10.2 90 60-166 141-231 (281)
110 PRK14169 bifunctional 5,10-met 98.1 1.6E-05 3.5E-10 81.6 10.2 91 59-166 139-230 (282)
111 PRK14170 bifunctional 5,10-met 98.1 1.2E-05 2.7E-10 82.4 9.4 90 60-166 141-231 (284)
112 PF00107 ADH_zinc_N: Zinc-bind 98.1 6.4E-06 1.4E-10 73.5 6.5 98 87-185 1-113 (130)
113 PRK14166 bifunctional 5,10-met 98.1 1.7E-05 3.6E-10 81.5 10.2 91 59-166 140-231 (282)
114 cd05213 NAD_bind_Glutamyl_tRNA 98.1 3.4E-05 7.3E-10 80.4 12.7 92 75-166 176-275 (311)
115 TIGR00465 ilvC ketol-acid redu 98.1 1.4E-05 3E-10 83.6 9.7 91 75-166 1-95 (314)
116 TIGR01035 hemA glutamyl-tRNA r 98.1 1.3E-05 2.9E-10 86.8 9.9 92 74-165 177-278 (417)
117 PRK14179 bifunctional 5,10-met 98.1 1.4E-05 3E-10 82.2 9.5 90 60-166 142-232 (284)
118 PRK14171 bifunctional 5,10-met 98.1 1.7E-05 3.6E-10 81.7 10.1 91 59-166 142-233 (288)
119 TIGR03451 mycoS_dep_FDH mycoth 98.1 1.8E-05 3.8E-10 83.2 10.3 92 74-166 174-278 (358)
120 PRK14177 bifunctional 5,10-met 98.1 1.9E-05 4.2E-10 81.1 10.2 90 60-166 143-233 (284)
121 PRK14172 bifunctional 5,10-met 98.1 2E-05 4.3E-10 80.8 10.2 90 60-166 142-232 (278)
122 PRK00045 hemA glutamyl-tRNA re 98.1 1.8E-05 3.9E-10 85.8 10.6 91 75-165 180-281 (423)
123 PRK14178 bifunctional 5,10-met 98.1 1.4E-05 3.1E-10 81.8 9.1 90 60-166 136-226 (279)
124 cd05191 NAD_bind_amino_acid_DH 98.1 3.4E-05 7.4E-10 65.1 10.0 67 72-163 18-85 (86)
125 PRK14187 bifunctional 5,10-met 98.1 2E-05 4.3E-10 81.4 10.1 91 59-166 143-234 (294)
126 PLN02516 methylenetetrahydrofo 98.1 2.1E-05 4.5E-10 81.4 10.2 91 59-166 150-241 (299)
127 TIGR01505 tartro_sem_red 2-hyd 98.0 1.2E-05 2.6E-10 82.6 8.3 89 79-167 1-96 (291)
128 PRK14182 bifunctional 5,10-met 98.0 2.3E-05 5E-10 80.4 10.2 91 59-166 140-231 (282)
129 TIGR02818 adh_III_F_hyde S-(hy 98.0 2.1E-05 4.6E-10 83.2 10.3 102 63-166 173-289 (368)
130 PRK14180 bifunctional 5,10-met 98.0 2.4E-05 5.3E-10 80.3 10.3 91 59-166 141-232 (282)
131 TIGR02819 fdhA_non_GSH formald 98.0 2E-05 4.3E-10 84.6 10.2 101 63-166 174-301 (393)
132 PRK14173 bifunctional 5,10-met 98.0 2.5E-05 5.4E-10 80.4 10.3 91 59-166 138-229 (287)
133 PLN02514 cinnamyl-alcohol dehy 98.0 6.6E-05 1.4E-09 79.1 13.8 118 63-182 168-295 (357)
134 cd01065 NAD_bind_Shikimate_DH 98.0 3.2E-05 7E-10 71.3 10.0 102 65-167 8-119 (155)
135 PRK14181 bifunctional 5,10-met 98.0 2.8E-05 6.1E-10 80.0 10.1 91 59-166 136-231 (287)
136 PLN02897 tetrahydrofolate dehy 98.0 2.2E-05 4.8E-10 82.3 9.3 90 60-166 198-288 (345)
137 PLN02616 tetrahydrofolate dehy 98.0 2.2E-05 4.9E-10 82.7 9.2 91 59-166 214-305 (364)
138 PLN02740 Alcohol dehydrogenase 98.0 1.7E-05 3.8E-10 84.2 8.6 93 74-167 196-303 (381)
139 COG2084 MmsB 3-hydroxyisobutyr 98.0 1.8E-05 3.9E-10 81.4 8.1 90 78-167 1-98 (286)
140 KOG0069|consensus 98.0 1.1E-05 2.4E-10 84.4 6.5 178 133-346 61-257 (336)
141 PRK11559 garR tartronate semia 98.0 2.7E-05 5.8E-10 80.0 9.3 90 78-167 3-99 (296)
142 PRK14193 bifunctional 5,10-met 98.0 3.9E-05 8.5E-10 78.8 10.1 91 59-166 141-234 (284)
143 PRK14185 bifunctional 5,10-met 98.0 4.1E-05 9E-10 79.0 10.1 91 59-166 140-235 (293)
144 COG0190 FolD 5,10-methylene-te 97.9 2.6E-05 5.7E-10 79.6 8.3 89 61-166 141-230 (283)
145 PRK10309 galactitol-1-phosphat 97.9 3.4E-05 7.4E-10 80.4 9.5 92 74-166 158-262 (347)
146 PRK15461 NADH-dependent gamma- 97.9 3.5E-05 7.7E-10 79.6 9.0 89 79-167 3-98 (296)
147 PRK14167 bifunctional 5,10-met 97.9 5E-05 1.1E-09 78.6 10.0 90 60-166 141-235 (297)
148 PRK14184 bifunctional 5,10-met 97.9 3.7E-05 8E-10 79.1 9.0 90 60-166 141-235 (286)
149 cd05311 NAD_bind_2_malic_enz N 97.9 0.00013 2.8E-09 72.8 12.0 105 71-176 19-140 (226)
150 PRK14168 bifunctional 5,10-met 97.9 5.7E-05 1.2E-09 78.1 9.2 91 59-166 144-239 (297)
151 PRK08605 D-lactate dehydrogena 97.9 5.6E-05 1.2E-09 79.5 9.4 189 129-355 42-248 (332)
152 COG0373 HemA Glutamyl-tRNA red 97.9 9.5E-05 2.1E-09 79.6 11.2 93 74-166 175-276 (414)
153 PRK14174 bifunctional 5,10-met 97.8 7.9E-05 1.7E-09 77.1 9.8 91 59-166 142-237 (295)
154 PRK07417 arogenate dehydrogena 97.8 4.2E-05 9.1E-10 78.3 7.8 89 79-167 2-94 (279)
155 PRK07502 cyclohexadienyl dehyd 97.8 5.9E-05 1.3E-09 78.1 8.6 91 77-167 6-103 (307)
156 PRK07066 3-hydroxybutyryl-CoA 97.8 8.1E-05 1.8E-09 78.0 9.5 88 78-165 8-120 (321)
157 cd08277 liver_alcohol_DH_like 97.8 0.00012 2.5E-09 77.4 10.6 92 74-166 182-288 (365)
158 KOG0023|consensus 97.8 4.9E-05 1.1E-09 78.6 7.3 121 60-183 167-300 (360)
159 PRK12490 6-phosphogluconate de 97.8 7.2E-05 1.6E-09 77.3 8.8 88 79-167 2-97 (299)
160 PLN00203 glutamyl-tRNA reducta 97.8 8.9E-05 1.9E-09 82.4 9.9 92 75-166 264-371 (519)
161 PLN03154 putative allyl alcoho 97.8 0.00018 3.9E-09 75.7 11.5 103 61-166 144-260 (348)
162 PLN02712 arogenate dehydrogena 97.8 8.4E-05 1.8E-09 85.1 9.6 95 72-167 364-463 (667)
163 cd08300 alcohol_DH_class_III c 97.8 7.4E-05 1.6E-09 78.9 8.3 92 74-166 184-290 (368)
164 PRK15469 ghrA bifunctional gly 97.7 2.4E-05 5.2E-10 81.7 4.4 93 261-354 134-237 (312)
165 PRK09599 6-phosphogluconate de 97.7 0.00011 2.4E-09 76.0 9.3 88 79-167 2-97 (301)
166 PRK09260 3-hydroxybutyryl-CoA 97.7 8.8E-05 1.9E-09 76.2 7.8 90 78-167 2-121 (288)
167 cd08296 CAD_like Cinnamyl alco 97.7 0.00034 7.4E-09 72.5 12.3 102 63-167 152-262 (333)
168 TIGR02825 B4_12hDH leukotriene 97.7 0.00025 5.3E-09 73.2 11.0 103 61-166 124-239 (325)
169 cd01076 NAD_bind_1_Glu_DH NAD( 97.7 0.00022 4.8E-09 71.2 10.3 87 72-161 26-132 (227)
170 cd08301 alcohol_DH_plants Plan 97.7 0.00018 3.9E-09 75.8 10.1 93 74-167 185-292 (369)
171 cd08233 butanediol_DH_like (2R 97.7 0.00036 7.7E-09 72.8 12.0 118 63-183 161-293 (351)
172 COG0059 IlvC Ketol-acid reduct 97.7 0.00013 2.8E-09 75.0 7.9 91 74-164 15-109 (338)
173 PLN02256 arogenate dehydrogena 97.6 0.00017 3.8E-09 75.0 8.8 90 75-166 34-129 (304)
174 PRK07340 ornithine cyclodeamin 97.6 0.00024 5.3E-09 73.9 9.8 98 75-176 123-232 (304)
175 PF03807 F420_oxidored: NADP o 97.6 0.00022 4.9E-09 60.6 7.9 84 79-164 1-94 (96)
176 PLN02545 3-hydroxybutyryl-CoA 97.6 0.00015 3.3E-09 74.6 8.0 89 78-166 5-122 (295)
177 PRK00258 aroE shikimate 5-dehy 97.6 0.00028 6E-09 72.4 9.7 104 61-165 107-222 (278)
178 cd08231 MDR_TM0436_like Hypoth 97.6 0.00038 8.1E-09 72.9 10.4 103 62-166 164-282 (361)
179 PRK08618 ornithine cyclodeamin 97.6 0.0004 8.7E-09 72.8 10.5 98 76-176 126-236 (325)
180 PRK05808 3-hydroxybutyryl-CoA 97.6 0.00074 1.6E-08 69.1 12.0 87 78-165 4-120 (282)
181 COG0604 Qor NADPH:quinone redu 97.6 0.00068 1.5E-08 71.2 12.0 119 45-166 112-243 (326)
182 cd08293 PTGR2 Prostaglandin re 97.6 0.00052 1.1E-08 71.2 11.0 87 77-165 155-255 (345)
183 cd05283 CAD1 Cinnamyl alcohol 97.5 0.001 2.2E-08 69.1 13.0 103 62-167 157-266 (337)
184 cd08242 MDR_like Medium chain 97.5 0.00054 1.2E-08 70.2 10.9 91 74-165 153-246 (319)
185 PF02737 3HCDH_N: 3-hydroxyacy 97.5 0.00015 3.3E-09 69.7 6.3 85 79-165 1-115 (180)
186 PRK14618 NAD(P)H-dependent gly 97.5 0.00034 7.4E-09 73.1 9.4 88 77-166 4-106 (328)
187 PRK07530 3-hydroxybutyryl-CoA 97.5 0.0003 6.6E-09 72.3 8.8 88 78-166 5-122 (292)
188 PRK07819 3-hydroxybutyryl-CoA 97.5 0.00029 6.3E-09 72.6 8.6 88 78-166 6-123 (286)
189 PRK08507 prephenate dehydrogen 97.5 0.00028 6E-09 72.0 8.2 87 79-167 2-94 (275)
190 cd08285 NADP_ADH NADP(H)-depen 97.5 0.00051 1.1E-08 71.6 10.1 101 64-167 156-269 (351)
191 cd08255 2-desacetyl-2-hydroxye 97.5 0.00071 1.5E-08 67.8 10.7 102 63-167 86-193 (277)
192 TIGR01692 HIBADH 3-hydroxyisob 97.5 0.00023 5E-09 73.1 7.3 86 82-167 1-93 (288)
193 cd08238 sorbose_phosphate_red 97.5 0.00045 9.8E-09 74.3 9.7 110 74-184 173-313 (410)
194 PRK14982 acyl-ACP reductase; P 97.5 0.00047 1E-08 72.8 9.4 91 73-166 151-248 (340)
195 cd08295 double_bond_reductase_ 97.5 0.00059 1.3E-08 70.9 10.2 103 61-166 137-253 (338)
196 PRK06035 3-hydroxyacyl-CoA deh 97.5 0.00046 1E-08 70.9 9.2 89 78-166 4-123 (291)
197 cd05284 arabinose_DH_like D-ar 97.5 0.0013 2.8E-08 68.0 12.5 104 63-167 154-269 (340)
198 PRK06545 prephenate dehydrogen 97.4 0.0003 6.6E-09 74.7 7.7 89 78-167 1-98 (359)
199 PRK13940 glutamyl-tRNA reducta 97.4 0.00066 1.4E-08 73.6 10.4 91 74-166 178-275 (414)
200 TIGR00872 gnd_rel 6-phosphoglu 97.4 0.0005 1.1E-08 71.2 9.0 88 79-167 2-96 (298)
201 TIGR02371 ala_DH_arch alanine 97.4 0.0006 1.3E-08 71.6 9.7 98 76-176 127-237 (325)
202 cd08294 leukotriene_B4_DH_like 97.4 0.00086 1.9E-08 68.7 10.6 102 61-165 129-242 (329)
203 PLN02688 pyrroline-5-carboxyla 97.4 0.00048 1E-08 69.6 8.5 86 79-166 2-97 (266)
204 PRK08268 3-hydroxy-acyl-CoA de 97.4 0.00045 9.7E-09 76.8 9.0 89 78-167 8-126 (507)
205 cd08278 benzyl_alcohol_DH Benz 97.4 0.0017 3.7E-08 68.5 13.1 92 74-166 184-287 (365)
206 cd01078 NAD_bind_H4MPT_DH NADP 97.4 0.00065 1.4E-08 65.6 9.0 96 72-167 23-132 (194)
207 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.0012 2.6E-08 65.6 10.7 83 72-155 18-119 (217)
208 PRK10083 putative oxidoreducta 97.4 0.00047 1E-08 71.3 8.2 93 74-167 158-262 (339)
209 PRK15059 tartronate semialdehy 97.4 0.0006 1.3E-08 70.5 8.9 88 79-167 2-96 (292)
210 PRK06141 ornithine cyclodeamin 97.4 0.00081 1.7E-08 70.3 9.8 99 75-176 123-234 (314)
211 PRK08655 prephenate dehydrogen 97.4 0.00058 1.3E-08 74.6 9.0 87 79-166 2-94 (437)
212 PLN02712 arogenate dehydrogena 97.4 0.00055 1.2E-08 78.5 9.0 91 76-167 51-146 (667)
213 PRK14031 glutamate dehydrogena 97.4 0.0011 2.4E-08 72.2 10.9 105 58-164 210-342 (444)
214 cd08284 FDH_like_2 Glutathione 97.4 0.00083 1.8E-08 69.5 9.6 104 61-167 154-269 (344)
215 PRK08293 3-hydroxybutyryl-CoA 97.4 0.00061 1.3E-08 70.0 8.4 86 78-164 4-121 (287)
216 cd08299 alcohol_DH_class_I_II_ 97.3 0.00088 1.9E-08 71.1 9.7 92 74-166 188-294 (373)
217 cd08246 crotonyl_coA_red croto 97.3 0.0015 3.3E-08 69.4 11.5 91 74-166 191-317 (393)
218 TIGR03026 NDP-sugDHase nucleot 97.3 0.00067 1.5E-08 73.3 8.7 88 79-166 2-122 (411)
219 TIGR02279 PaaC-3OHAcCoADH 3-hy 97.3 0.00071 1.5E-08 75.2 9.0 90 77-167 5-124 (503)
220 cd08270 MDR4 Medium chain dehy 97.3 0.0021 4.5E-08 65.1 11.7 100 63-166 121-224 (305)
221 cd05313 NAD_bind_2_Glu_DH NAD( 97.3 0.0014 3E-08 66.6 10.3 95 72-167 33-157 (254)
222 cd08291 ETR_like_1 2-enoyl thi 97.3 0.0016 3.6E-08 67.1 10.9 89 76-166 142-244 (324)
223 PRK09414 glutamate dehydrogena 97.3 0.0013 2.7E-08 71.9 10.3 90 72-162 227-341 (445)
224 PF13241 NAD_binding_7: Putati 97.3 0.00022 4.7E-09 62.4 3.6 87 74-165 4-92 (103)
225 PLN02477 glutamate dehydrogena 97.3 0.0014 3.1E-08 70.8 10.6 84 71-155 200-303 (410)
226 TIGR02992 ectoine_eutC ectoine 97.3 0.0012 2.6E-08 69.3 9.7 98 76-176 128-239 (326)
227 cd05188 MDR Medium chain reduc 97.3 0.0018 4E-08 63.6 10.6 92 75-167 133-235 (271)
228 PRK06129 3-hydroxyacyl-CoA deh 97.3 0.00092 2E-08 69.4 8.8 65 78-142 3-92 (308)
229 PRK06823 ornithine cyclodeamin 97.3 0.0014 3.1E-08 68.6 10.1 98 76-176 127-237 (315)
230 COG0287 TyrA Prephenate dehydr 97.3 0.00065 1.4E-08 70.0 7.3 90 77-167 3-101 (279)
231 cd08298 CAD2 Cinnamyl alcohol 97.2 0.0018 3.8E-08 66.6 10.5 100 63-165 156-257 (329)
232 PRK00094 gpsA NAD(P)H-dependen 97.2 0.001 2.2E-08 68.8 8.7 86 79-164 3-105 (325)
233 TIGR01470 cysG_Nterm siroheme 97.2 0.0006 1.3E-08 67.1 6.6 91 73-164 5-100 (205)
234 PRK07531 bifunctional 3-hydrox 97.2 0.00092 2E-08 74.1 8.8 89 78-166 5-118 (495)
235 TIGR00507 aroE shikimate 5-deh 97.2 0.002 4.4E-08 65.7 10.6 106 61-167 102-217 (270)
236 PF02423 OCD_Mu_crystall: Orni 97.2 0.00096 2.1E-08 69.7 8.4 97 77-176 128-239 (313)
237 cd08289 MDR_yhfp_like Yhfp put 97.2 0.0018 4E-08 66.2 10.4 89 76-166 146-245 (326)
238 PLN02350 phosphogluconate dehy 97.2 0.00081 1.7E-08 74.4 7.8 89 79-167 8-110 (493)
239 PLN02858 fructose-bisphosphate 97.2 0.00087 1.9E-08 82.4 8.8 92 76-167 3-101 (1378)
240 PRK12491 pyrroline-5-carboxyla 97.2 0.0018 3.8E-08 66.4 9.7 87 78-166 3-99 (272)
241 PRK14619 NAD(P)H-dependent gly 97.2 0.0012 2.5E-08 68.6 8.4 79 76-166 3-84 (308)
242 PRK06130 3-hydroxybutyryl-CoA 97.2 0.0012 2.5E-08 68.4 8.4 86 78-163 5-114 (311)
243 PRK14030 glutamate dehydrogena 97.2 0.0019 4.2E-08 70.4 10.3 92 72-164 223-343 (445)
244 cd05280 MDR_yhdh_yhfp Yhdh and 97.2 0.0036 7.8E-08 63.8 11.9 89 76-166 146-245 (325)
245 PF00208 ELFV_dehydrog: Glutam 97.2 0.0028 6.1E-08 64.0 10.7 92 73-165 28-147 (244)
246 cd08265 Zn_ADH3 Alcohol dehydr 97.2 0.0017 3.6E-08 69.1 9.6 93 74-167 201-310 (384)
247 PRK12862 malic enzyme; Reviewe 97.2 0.0024 5.2E-08 74.1 11.4 120 54-176 167-304 (763)
248 PRK06407 ornithine cyclodeamin 97.2 0.0018 3.9E-08 67.4 9.5 98 76-176 116-227 (301)
249 PRK12861 malic enzyme; Reviewe 97.2 0.0024 5.1E-08 73.8 11.2 120 54-176 163-300 (764)
250 PRK13302 putative L-aspartate 97.1 0.00091 2E-08 68.5 7.0 88 77-165 6-99 (271)
251 cd08283 FDH_like_1 Glutathione 97.1 0.0027 5.8E-08 67.7 10.8 102 62-166 172-308 (386)
252 PLN02858 fructose-bisphosphate 97.1 0.0013 2.7E-08 81.0 9.3 91 77-167 324-421 (1378)
253 PRK11199 tyrA bifunctional cho 97.1 0.00097 2.1E-08 71.4 7.3 78 76-167 97-178 (374)
254 PRK06046 alanine dehydrogenase 97.1 0.0021 4.5E-08 67.6 9.6 96 77-176 129-238 (326)
255 PF02254 TrkA_N: TrkA-N domain 97.1 0.0015 3.3E-08 57.2 7.4 83 80-162 1-94 (116)
256 PRK14806 bifunctional cyclohex 97.1 0.0011 2.5E-08 76.6 8.4 90 78-167 4-100 (735)
257 PTZ00079 NADP-specific glutama 97.1 0.0032 7E-08 68.7 11.1 107 57-165 218-353 (454)
258 PRK11064 wecC UDP-N-acetyl-D-m 97.1 0.0016 3.4E-08 70.7 8.7 88 78-166 4-121 (415)
259 cd08245 CAD Cinnamyl alcohol d 97.1 0.0033 7.2E-08 64.6 10.8 102 62-166 150-258 (330)
260 KOG0067|consensus 97.1 0.00045 9.8E-09 72.6 4.2 92 74-167 175-272 (435)
261 cd08252 AL_MDR Arginate lyase 97.1 0.0055 1.2E-07 63.0 12.2 89 77-166 150-250 (336)
262 cd08240 6_hydroxyhexanoate_dh_ 97.1 0.0027 5.9E-08 66.1 9.9 102 63-166 163-276 (350)
263 cd08274 MDR9 Medium chain dehy 97.1 0.0026 5.6E-08 65.9 9.7 89 74-165 175-274 (350)
264 PRK03369 murD UDP-N-acetylmura 97.1 0.0016 3.5E-08 72.0 8.5 70 75-144 10-82 (488)
265 cd08292 ETR_like_2 2-enoyl thi 97.1 0.0059 1.3E-07 62.3 12.1 91 74-166 137-240 (324)
266 PF01210 NAD_Gly3P_dh_N: NAD-d 97.1 0.0011 2.4E-08 62.1 6.2 87 79-166 1-105 (157)
267 TIGR01809 Shik-DH-AROM shikima 97.1 0.0042 9.1E-08 64.0 11.0 82 61-142 108-200 (282)
268 cd08256 Zn_ADH2 Alcohol dehydr 97.0 0.0033 7.2E-08 65.5 10.2 93 74-167 172-277 (350)
269 TIGR01546 GAPDH-II_archae glyc 97.0 0.0021 4.6E-08 67.7 8.7 83 80-162 1-106 (333)
270 PTZ00142 6-phosphogluconate de 97.0 0.0017 3.7E-08 71.6 8.3 89 78-167 2-104 (470)
271 cd08254 hydroxyacyl_CoA_DH 6-h 97.0 0.005 1.1E-07 63.1 11.3 102 64-167 154-266 (338)
272 COG0345 ProC Pyrroline-5-carbo 97.0 0.0033 7.1E-08 64.3 9.7 87 78-166 2-97 (266)
273 cd08286 FDH_like_ADH2 formalde 97.0 0.0029 6.4E-08 65.6 9.5 92 74-166 164-268 (345)
274 cd08234 threonine_DH_like L-th 97.0 0.0015 3.3E-08 67.2 7.3 93 74-167 157-260 (334)
275 PRK11880 pyrroline-5-carboxyla 97.0 0.0016 3.5E-08 65.8 7.4 87 78-166 3-96 (267)
276 PRK09422 ethanol-active dehydr 97.0 0.0032 6.8E-08 65.0 9.7 103 61-166 149-263 (338)
277 PRK07589 ornithine cyclodeamin 97.0 0.0038 8.2E-08 66.3 10.3 97 77-176 129-240 (346)
278 PF03721 UDPG_MGDP_dh_N: UDP-g 97.0 0.0023 5E-08 61.9 8.0 88 78-166 1-122 (185)
279 cd08282 PFDH_like Pseudomonas 97.0 0.0033 7.2E-08 66.6 9.9 101 63-166 165-287 (375)
280 cd05279 Zn_ADH1 Liver alcohol 97.0 0.0031 6.7E-08 66.6 9.6 92 74-166 181-287 (365)
281 cd08243 quinone_oxidoreductase 97.0 0.0073 1.6E-07 61.1 11.8 100 64-166 131-240 (320)
282 PRK12549 shikimate 5-dehydroge 97.0 0.0028 6.2E-08 65.3 8.8 79 61-140 112-200 (284)
283 PRK09424 pntA NAD(P) transhydr 97.0 0.0054 1.2E-07 68.2 11.4 238 91-351 21-297 (509)
284 cd08269 Zn_ADH9 Alcohol dehydr 97.0 0.0042 9.1E-08 62.9 9.9 92 74-166 127-231 (312)
285 PLN02702 L-idonate 5-dehydroge 97.0 0.0031 6.6E-08 66.3 9.1 92 74-166 179-287 (364)
286 TIGR01751 crot-CoA-red crotony 96.9 0.0038 8.2E-08 66.7 9.8 91 74-166 187-312 (398)
287 cd08260 Zn_ADH6 Alcohol dehydr 96.9 0.0057 1.2E-07 63.5 10.8 103 62-166 152-266 (345)
288 PRK06718 precorrin-2 dehydroge 96.9 0.0021 4.5E-08 63.1 7.0 90 73-164 6-100 (202)
289 PRK15057 UDP-glucose 6-dehydro 96.9 0.0026 5.7E-08 68.4 8.4 87 79-166 2-119 (388)
290 cd08287 FDH_like_ADH3 formalde 96.9 0.0044 9.6E-08 64.2 9.9 92 74-166 166-270 (345)
291 TIGR02823 oxido_YhdH putative 96.9 0.0045 9.8E-08 63.3 9.8 91 74-166 142-243 (323)
292 PRK07680 late competence prote 96.9 0.0026 5.6E-08 64.8 7.9 86 79-166 2-98 (273)
293 cd08297 CAD3 Cinnamyl alcohol 96.9 0.0079 1.7E-07 62.2 11.7 102 62-166 153-267 (341)
294 PRK15182 Vi polysaccharide bio 96.9 0.0041 8.8E-08 67.8 9.8 89 77-167 6-123 (425)
295 COG0686 Ald Alanine dehydrogen 96.9 0.02 4.4E-07 59.4 14.1 217 94-341 24-267 (371)
296 cd05312 NAD_bind_1_malic_enz N 96.9 0.009 2E-07 61.5 11.5 108 69-176 17-154 (279)
297 PRK07232 bifunctional malic en 96.9 0.0055 1.2E-07 70.9 11.1 121 53-176 158-296 (752)
298 PRK12771 putative glutamate sy 96.9 0.0019 4E-08 72.7 7.0 36 74-109 134-169 (564)
299 PRK08818 prephenate dehydrogen 96.9 0.0031 6.7E-08 67.5 8.1 82 76-168 3-92 (370)
300 PRK06476 pyrroline-5-carboxyla 96.9 0.0049 1.1E-07 62.2 9.3 86 79-166 2-95 (258)
301 COG1712 Predicted dinucleotide 96.8 0.0021 4.5E-08 63.8 6.0 96 79-175 2-104 (255)
302 PRK08291 ectoine utilization p 96.8 0.0057 1.2E-07 64.4 9.8 98 76-176 131-242 (330)
303 cd08232 idonate-5-DH L-idonate 96.8 0.0049 1.1E-07 63.7 9.2 101 63-166 154-264 (339)
304 cd05285 sorbitol_DH Sorbitol d 96.8 0.0054 1.2E-07 63.8 9.4 94 73-167 159-268 (343)
305 PRK07679 pyrroline-5-carboxyla 96.8 0.0049 1.1E-07 63.0 8.9 88 77-164 3-99 (279)
306 COG0569 TrkA K+ transport syst 96.8 0.0031 6.6E-08 62.9 7.2 65 78-142 1-76 (225)
307 PRK10754 quinone oxidoreductas 96.8 0.012 2.6E-07 60.4 11.8 91 74-166 138-241 (327)
308 cd08264 Zn_ADH_like2 Alcohol d 96.8 0.0065 1.4E-07 62.3 9.7 95 63-165 151-254 (325)
309 cd08258 Zn_ADH4 Alcohol dehydr 96.8 0.014 3.1E-07 59.9 12.2 119 63-183 152-286 (306)
310 TIGR01724 hmd_rel H2-forming N 96.8 0.01 2.2E-07 62.1 10.8 156 88-261 31-203 (341)
311 COG3288 PntA NAD/NADP transhyd 96.8 0.0019 4.1E-08 66.7 5.4 93 73-165 160-282 (356)
312 COG2423 Predicted ornithine cy 96.8 0.0062 1.3E-07 64.2 9.4 98 77-177 130-241 (330)
313 cd05288 PGDH Prostaglandin deh 96.8 0.0077 1.7E-07 61.7 10.0 103 61-166 131-246 (329)
314 TIGR00561 pntA NAD(P) transhyd 96.8 0.018 3.9E-07 64.0 13.3 236 91-349 20-294 (511)
315 COG0334 GdhA Glutamate dehydro 96.7 0.0081 1.7E-07 64.6 10.2 96 72-169 202-317 (411)
316 TIGR00873 gnd 6-phosphoglucona 96.7 0.0043 9.3E-08 68.4 8.2 86 80-166 2-100 (467)
317 KOG0409|consensus 96.7 0.0032 6.9E-08 64.9 6.6 69 76-144 34-103 (327)
318 cd05281 TDH Threonine dehydrog 96.7 0.0042 9E-08 64.6 7.7 91 75-166 162-264 (341)
319 PRK06719 precorrin-2 dehydroge 96.7 0.0034 7.4E-08 59.2 6.3 88 73-164 9-100 (157)
320 TIGR00518 alaDH alanine dehydr 96.7 0.031 6.8E-07 59.8 14.3 221 91-342 21-267 (370)
321 cd08263 Zn_ADH10 Alcohol dehyd 96.7 0.011 2.4E-07 62.2 10.8 103 62-166 174-289 (367)
322 TIGR00692 tdh L-threonine 3-de 96.7 0.0062 1.3E-07 63.2 8.7 92 74-166 159-263 (340)
323 cd05282 ETR_like 2-enoyl thioe 96.7 0.012 2.6E-07 59.9 10.7 91 74-166 136-239 (323)
324 PRK05396 tdh L-threonine 3-deh 96.7 0.0064 1.4E-07 63.1 8.8 92 75-167 162-266 (341)
325 PRK13304 L-aspartate dehydroge 96.7 0.0035 7.7E-08 63.9 6.6 85 79-164 3-92 (265)
326 cd08259 Zn_ADH5 Alcohol dehydr 96.7 0.018 3.8E-07 58.8 11.7 100 63-166 151-258 (332)
327 COG0281 SfcA Malic enzyme [Ene 96.7 0.012 2.6E-07 63.3 10.6 121 53-176 172-312 (432)
328 COG2085 Predicted dinucleotide 96.6 0.0063 1.4E-07 60.0 7.8 88 78-166 2-95 (211)
329 cd05286 QOR2 Quinone oxidoredu 96.6 0.01 2.2E-07 59.4 9.4 92 74-167 134-238 (320)
330 PRK13403 ketol-acid reductoiso 96.6 0.00072 1.6E-08 70.8 1.1 93 257-349 10-113 (335)
331 PRK09310 aroDE bifunctional 3- 96.6 0.009 1.9E-07 66.1 9.6 81 61-142 317-400 (477)
332 PRK13771 putative alcohol dehy 96.6 0.0096 2.1E-07 61.3 9.2 98 64-166 152-257 (334)
333 cd08244 MDR_enoyl_red Possible 96.6 0.012 2.6E-07 59.9 9.8 91 74-166 140-243 (324)
334 cd08249 enoyl_reductase_like e 96.6 0.011 2.5E-07 61.4 9.7 90 75-166 153-256 (339)
335 cd00762 NAD_bind_malic_enz NAD 96.6 0.018 3.8E-07 58.6 10.6 108 69-176 17-155 (254)
336 cd08262 Zn_ADH8 Alcohol dehydr 96.5 0.0092 2E-07 61.7 8.9 92 74-166 159-266 (341)
337 cd05291 HicDH_like L-2-hydroxy 96.5 0.015 3.2E-07 60.5 10.3 87 78-164 1-117 (306)
338 cd08250 Mgc45594_like Mgc45594 96.5 0.014 3.1E-07 59.8 10.0 102 62-166 126-239 (329)
339 COG2130 Putative NADP-dependen 96.5 0.013 2.9E-07 60.6 9.4 105 59-166 134-251 (340)
340 PTZ00354 alcohol dehydrogenase 96.5 0.023 4.9E-07 58.1 11.4 90 74-165 138-241 (334)
341 PRK06199 ornithine cyclodeamin 96.5 0.013 2.8E-07 63.0 9.8 94 77-175 155-268 (379)
342 PRK06522 2-dehydropantoate 2-r 96.5 0.011 2.4E-07 60.4 8.9 85 79-166 2-102 (304)
343 PF10727 Rossmann-like: Rossma 96.5 0.0061 1.3E-07 55.7 6.2 87 77-164 10-104 (127)
344 cd08290 ETR 2-enoyl thioester 96.5 0.026 5.6E-07 58.3 11.7 101 63-166 134-253 (341)
345 cd05278 FDH_like Formaldehyde 96.5 0.011 2.3E-07 61.2 8.7 92 74-166 165-269 (347)
346 PRK08229 2-dehydropantoate 2-r 96.4 0.0093 2E-07 62.4 8.2 87 78-165 3-108 (341)
347 TIGR02817 adh_fam_1 zinc-bindi 96.4 0.027 5.8E-07 58.0 11.5 87 77-164 149-247 (336)
348 TIGR02354 thiF_fam2 thiamine b 96.4 0.0072 1.6E-07 59.3 6.8 36 74-109 18-54 (200)
349 cd08248 RTN4I1 Human Reticulon 96.4 0.029 6.3E-07 58.1 11.7 88 76-166 162-259 (350)
350 PRK13301 putative L-aspartate 96.4 0.0071 1.5E-07 61.7 6.8 87 78-166 3-95 (267)
351 cd08236 sugar_DH NAD(P)-depend 96.4 0.017 3.6E-07 59.8 9.7 102 62-166 147-260 (343)
352 cd08235 iditol_2_DH_like L-idi 96.4 0.017 3.6E-07 59.8 9.5 101 63-166 154-267 (343)
353 smart00829 PKS_ER Enoylreducta 96.4 0.036 7.7E-07 54.6 11.4 91 74-166 102-207 (288)
354 PRK00676 hemA glutamyl-tRNA re 96.4 0.012 2.5E-07 62.3 8.2 88 74-166 171-263 (338)
355 TIGR01915 npdG NADPH-dependent 96.4 0.011 2.4E-07 58.3 7.7 88 79-166 2-103 (219)
356 COG1748 LYS9 Saccharopine dehy 96.3 0.011 2.3E-07 63.6 7.9 88 78-167 2-102 (389)
357 cd08261 Zn_ADH7 Alcohol dehydr 96.3 0.014 3E-07 60.4 8.6 93 74-167 157-261 (337)
358 PRK03562 glutathione-regulated 96.3 0.0069 1.5E-07 69.1 6.7 67 77-143 400-475 (621)
359 cd08288 MDR_yhdh Yhdh putative 96.3 0.022 4.8E-07 58.2 9.7 89 76-166 146-244 (324)
360 PRK10669 putative cation:proto 96.3 0.0077 1.7E-07 67.7 6.8 65 78-142 418-491 (558)
361 PRK06928 pyrroline-5-carboxyla 96.2 0.013 2.8E-07 60.1 7.7 87 78-166 2-100 (277)
362 PRK07634 pyrroline-5-carboxyla 96.2 0.016 3.5E-07 57.6 8.3 89 76-166 3-101 (245)
363 cd05195 enoyl_red enoyl reduct 96.2 0.043 9.3E-07 53.9 11.1 91 74-166 106-211 (293)
364 KOG4230|consensus 96.2 0.015 3.2E-07 64.3 8.2 87 63-166 149-236 (935)
365 PF03949 Malic_M: Malic enzyme 96.2 0.026 5.7E-07 57.4 9.5 108 69-176 17-155 (255)
366 TIGR02437 FadB fatty oxidation 96.2 0.013 2.9E-07 67.9 8.1 86 78-165 314-430 (714)
367 PRK05562 precorrin-2 dehydroge 96.2 0.014 3E-07 58.3 7.3 91 73-164 21-116 (223)
368 TIGR01318 gltD_gamma_fam gluta 96.2 0.017 3.6E-07 63.7 8.6 36 75-110 139-174 (467)
369 PRK14027 quinate/shikimate deh 96.2 0.018 3.9E-07 59.5 8.3 79 61-140 112-202 (283)
370 cd08241 QOR1 Quinone oxidoredu 96.2 0.021 4.6E-07 57.4 8.7 91 74-166 137-240 (323)
371 cd08279 Zn_ADH_class_III Class 96.1 0.02 4.3E-07 60.3 8.7 93 74-167 180-285 (363)
372 cd05276 p53_inducible_oxidored 96.1 0.042 9.1E-07 55.1 10.7 100 64-166 128-240 (323)
373 PRK03659 glutathione-regulated 96.1 0.0096 2.1E-07 67.7 6.7 88 77-164 400-498 (601)
374 COG0169 AroE Shikimate 5-dehyd 96.1 0.023 4.9E-07 58.8 8.5 103 61-166 109-228 (283)
375 PRK12548 shikimate 5-dehydroge 96.1 0.029 6.3E-07 57.9 9.4 48 62-110 112-160 (289)
376 PRK01710 murD UDP-N-acetylmura 96.1 0.023 5E-07 62.3 9.0 69 75-143 12-88 (458)
377 PRK09496 trkA potassium transp 96.0 0.016 3.4E-07 62.9 7.6 64 79-142 2-75 (453)
378 PRK11730 fadB multifunctional 96.0 0.019 4.1E-07 66.6 8.5 86 78-165 314-430 (715)
379 cd08273 MDR8 Medium chain dehy 96.0 0.058 1.3E-06 55.2 11.2 101 63-167 127-236 (331)
380 TIGR01921 DAP-DH diaminopimela 96.0 0.018 4E-07 60.5 7.5 84 78-163 4-90 (324)
381 PF01408 GFO_IDH_MocA: Oxidore 96.0 0.019 4.1E-07 50.4 6.6 81 79-160 2-89 (120)
382 PRK04148 hypothetical protein; 96.0 0.018 3.9E-07 53.1 6.6 70 76-146 16-91 (134)
383 PRK12769 putative oxidoreducta 96.0 0.021 4.6E-07 65.4 8.7 36 75-110 325-360 (654)
384 PRK14106 murD UDP-N-acetylmura 96.0 0.02 4.4E-07 62.2 8.1 68 75-142 3-78 (450)
385 PRK12749 quinate/shikimate deh 96.0 0.035 7.6E-07 57.5 9.4 79 61-140 109-204 (288)
386 TIGR02440 FadJ fatty oxidation 96.0 0.021 4.5E-07 66.1 8.4 87 78-165 305-422 (699)
387 cd08276 MDR7 Medium chain dehy 96.0 0.032 7E-07 56.9 9.1 92 74-167 158-262 (336)
388 PF13460 NAD_binding_10: NADH( 96.0 0.028 6.2E-07 52.7 8.0 61 80-142 1-70 (183)
389 PRK12921 2-dehydropantoate 2-r 95.9 0.028 6E-07 57.7 8.6 82 79-163 2-101 (305)
390 PRK01438 murD UDP-N-acetylmura 95.9 0.027 5.8E-07 61.9 9.0 71 74-144 13-90 (480)
391 PRK00066 ldh L-lactate dehydro 95.9 0.03 6.6E-07 58.6 8.9 67 76-142 5-83 (315)
392 PLN02520 bifunctional 3-dehydr 95.9 0.03 6.6E-07 62.7 9.4 68 73-140 375-447 (529)
393 COG1250 FadB 3-hydroxyacyl-CoA 95.9 0.017 3.6E-07 60.4 6.7 88 77-165 3-120 (307)
394 PF04016 DUF364: Domain of unk 95.9 0.016 3.4E-07 54.2 5.9 86 74-166 8-97 (147)
395 PRK12809 putative oxidoreducta 95.9 0.024 5.1E-07 64.9 8.5 35 76-110 309-343 (639)
396 cd05289 MDR_like_2 alcohol deh 95.9 0.025 5.3E-07 56.6 7.6 91 74-167 142-241 (309)
397 cd08267 MDR1 Medium chain dehy 95.8 0.078 1.7E-06 53.5 11.3 102 64-167 132-243 (319)
398 PTZ00082 L-lactate dehydrogena 95.8 0.047 1E-06 57.4 9.7 67 75-142 4-84 (321)
399 PRK00048 dihydrodipicolinate r 95.8 0.026 5.7E-07 57.3 7.5 82 79-161 3-88 (257)
400 cd08253 zeta_crystallin Zeta-c 95.8 0.12 2.5E-06 52.0 12.2 91 74-166 142-245 (325)
401 cd08268 MDR2 Medium chain dehy 95.8 0.071 1.5E-06 53.8 10.5 102 63-167 132-246 (328)
402 TIGR02356 adenyl_thiF thiazole 95.8 0.015 3.3E-07 56.9 5.4 37 74-110 18-55 (202)
403 TIGR02441 fa_ox_alpha_mit fatt 95.7 0.018 3.9E-07 67.0 6.7 86 78-165 336-452 (737)
404 PTZ00117 malate dehydrogenase; 95.7 0.019 4E-07 60.3 6.3 67 75-142 3-83 (319)
405 PRK11154 fadJ multifunctional 95.7 0.028 6.1E-07 65.2 8.3 86 78-165 310-426 (708)
406 PRK08324 short chain dehydroge 95.7 0.022 4.7E-07 65.7 7.3 41 74-114 419-460 (681)
407 PRK10637 cysG siroheme synthas 95.7 0.03 6.5E-07 61.6 8.0 92 73-165 8-104 (457)
408 cd08266 Zn_ADH_like1 Alcohol d 95.7 0.12 2.6E-06 52.5 11.9 91 74-166 164-267 (342)
409 PRK12814 putative NADPH-depend 95.7 0.047 1E-06 62.7 9.7 35 76-110 192-226 (652)
410 PRK13529 malate dehydrogenase; 95.6 0.094 2E-06 58.7 11.6 122 54-175 269-430 (563)
411 PRK12475 thiamine/molybdopteri 95.6 0.018 4E-07 60.9 5.8 37 74-110 21-58 (338)
412 COG1004 Ugd Predicted UDP-gluc 95.6 0.063 1.4E-06 57.6 9.7 87 78-165 1-121 (414)
413 PLN02353 probable UDP-glucose 95.6 0.059 1.3E-06 59.6 9.9 89 78-166 2-129 (473)
414 KOG1197|consensus 95.6 0.18 3.9E-06 51.4 12.1 93 74-168 144-249 (336)
415 PF01113 DapB_N: Dihydrodipico 95.6 0.02 4.4E-07 51.7 5.1 81 79-161 2-95 (124)
416 PRK00141 murD UDP-N-acetylmura 95.6 0.038 8.2E-07 61.0 8.3 70 74-143 12-85 (473)
417 cd08272 MDR6 Medium chain dehy 95.6 0.13 2.9E-06 51.8 11.7 90 74-166 142-243 (326)
418 TIGR00670 asp_carb_tr aspartat 95.6 0.22 4.8E-06 52.0 13.5 120 35-164 114-263 (301)
419 COG5322 Predicted dehydrogenas 95.6 0.065 1.4E-06 54.7 9.1 93 71-166 161-263 (351)
420 KOG2380|consensus 95.5 0.021 4.5E-07 59.9 5.6 89 76-165 51-144 (480)
421 TIGR02824 quinone_pig3 putativ 95.5 0.059 1.3E-06 54.3 8.9 91 74-166 137-240 (325)
422 PRK12550 shikimate 5-dehydroge 95.5 0.053 1.1E-06 55.8 8.5 76 61-140 108-186 (272)
423 PRK02472 murD UDP-N-acetylmura 95.5 0.061 1.3E-06 58.4 9.3 68 75-142 3-78 (447)
424 TIGR01763 MalateDH_bact malate 95.5 0.093 2E-06 54.7 10.3 65 78-143 2-80 (305)
425 COG0771 MurD UDP-N-acetylmuram 95.4 0.046 9.9E-07 59.9 8.0 68 76-143 6-80 (448)
426 PLN03129 NADP-dependent malic 95.4 0.12 2.7E-06 58.0 11.4 121 54-175 295-449 (581)
427 PRK08644 thiamine biosynthesis 95.4 0.026 5.6E-07 55.8 5.5 37 74-110 25-62 (212)
428 PF00070 Pyr_redox: Pyridine n 95.4 0.032 6.9E-07 46.0 5.2 33 79-111 1-33 (80)
429 COG1648 CysG Siroheme synthase 95.4 0.024 5.2E-07 56.1 5.2 92 73-165 8-104 (210)
430 PF02558 ApbA: Ketopantoate re 95.4 0.032 7E-07 51.1 5.8 86 80-166 1-103 (151)
431 PRK09496 trkA potassium transp 95.3 0.067 1.5E-06 58.0 9.1 68 75-142 229-307 (453)
432 PTZ00317 NADP-dependent malic 95.3 0.15 3.2E-06 57.2 11.7 123 54-176 271-430 (559)
433 KOG1201|consensus 95.3 0.11 2.5E-06 53.7 10.0 71 71-141 32-123 (300)
434 PF03435 Saccharop_dh: Sacchar 95.3 0.047 1E-06 58.3 7.6 83 80-164 1-98 (386)
435 cd00650 LDH_MDH_like NAD-depen 95.3 0.049 1.1E-06 55.3 7.4 85 80-164 1-119 (263)
436 PF03447 NAD_binding_3: Homose 95.3 0.031 6.8E-07 49.4 5.3 82 84-166 1-92 (117)
437 PRK00683 murD UDP-N-acetylmura 95.3 0.043 9.3E-07 59.4 7.3 84 77-161 3-87 (418)
438 PRK00856 pyrB aspartate carbam 95.2 0.27 5.7E-06 51.5 12.5 119 34-164 119-262 (305)
439 PF00056 Ldh_1_N: lactate/mala 95.2 0.037 8.1E-07 51.1 5.5 65 79-143 2-80 (141)
440 cd05292 LDH_2 A subgroup of L- 95.1 0.042 9E-07 57.3 6.5 65 79-143 2-78 (308)
441 cd01339 LDH-like_MDH L-lactate 95.1 0.097 2.1E-06 54.2 8.9 63 80-142 1-76 (300)
442 PRK00779 ornithine carbamoyltr 95.0 0.4 8.7E-06 50.1 13.4 131 34-173 116-276 (304)
443 PRK06223 malate dehydrogenase; 95.0 0.051 1.1E-06 56.3 6.8 64 78-142 3-80 (307)
444 PRK01390 murD UDP-N-acetylmura 95.0 0.051 1.1E-06 59.4 7.1 69 75-143 7-76 (460)
445 cd00300 LDH_like L-lactate deh 95.0 0.086 1.9E-06 54.8 8.3 86 80-165 1-116 (300)
446 PLN02527 aspartate carbamoyltr 95.0 0.42 9.1E-06 50.0 13.4 121 34-164 114-266 (306)
447 cd08251 polyketide_synthase po 94.8 0.34 7.4E-06 48.3 12.0 91 74-166 118-221 (303)
448 COG1023 Gnd Predicted 6-phosph 94.8 0.12 2.5E-06 52.2 8.2 88 79-167 2-97 (300)
449 COG0677 WecC UDP-N-acetyl-D-ma 94.8 0.056 1.2E-06 57.9 6.4 87 78-165 10-129 (436)
450 TIGR00658 orni_carb_tr ornithi 94.8 0.48 1E-05 49.6 13.3 131 34-173 112-275 (304)
451 PRK07688 thiamine/molybdopteri 94.8 0.045 9.9E-07 58.0 5.7 37 74-110 21-58 (339)
452 PRK04207 glyceraldehyde-3-phos 94.8 0.098 2.1E-06 55.5 8.2 86 79-165 3-110 (341)
453 PRK08762 molybdopterin biosynt 94.8 0.043 9.4E-07 58.8 5.6 36 74-109 132-168 (376)
454 PRK08265 short chain dehydroge 94.8 0.14 3E-06 51.2 8.9 40 75-114 4-44 (261)
455 cd01487 E1_ThiF_like E1_ThiF_l 94.7 0.11 2.5E-06 49.6 7.8 32 79-110 1-33 (174)
456 COG0026 PurK Phosphoribosylami 94.7 0.072 1.6E-06 56.6 6.9 76 77-155 1-82 (375)
457 cd05293 LDH_1 A subgroup of L- 94.7 0.11 2.5E-06 54.3 8.3 86 78-164 4-120 (312)
458 PRK13303 L-aspartate dehydroge 94.6 0.082 1.8E-06 54.0 6.9 84 79-163 3-91 (265)
459 PRK06182 short chain dehydroge 94.6 0.13 2.8E-06 51.6 8.3 66 76-141 2-83 (273)
460 PLN02602 lactate dehydrogenase 94.6 0.14 3.1E-06 54.5 8.8 65 78-142 38-115 (350)
461 PRK05600 thiamine biosynthesis 94.5 0.06 1.3E-06 57.8 5.9 37 74-110 38-75 (370)
462 PRK04690 murD UDP-N-acetylmura 94.5 0.11 2.5E-06 57.2 8.2 69 75-143 6-80 (468)
463 PRK01368 murD UDP-N-acetylmura 94.5 0.11 2.3E-06 57.2 7.9 67 76-143 5-74 (454)
464 PRK06249 2-dehydropantoate 2-r 94.5 0.19 4.2E-06 52.2 9.5 85 78-164 6-106 (313)
465 PRK01713 ornithine carbamoyltr 94.5 0.5 1.1E-05 50.1 12.6 124 34-165 119-276 (334)
466 cd05212 NAD_bind_m-THF_DH_Cycl 94.4 0.04 8.6E-07 51.2 3.8 40 303-345 64-103 (140)
467 PRK05993 short chain dehydroge 94.4 0.11 2.4E-06 52.5 7.3 40 76-115 3-43 (277)
468 PRK12439 NAD(P)H-dependent gly 94.4 0.12 2.7E-06 54.5 7.9 88 78-166 8-113 (341)
469 CHL00194 ycf39 Ycf39; Provisio 94.4 0.14 3.1E-06 52.9 8.2 63 79-141 2-73 (317)
470 PRK00421 murC UDP-N-acetylmura 94.4 0.13 2.9E-06 56.3 8.3 68 75-142 5-76 (461)
471 PRK03806 murD UDP-N-acetylmura 94.4 0.17 3.7E-06 54.9 9.2 85 75-160 4-92 (438)
472 KOG0089|consensus 94.3 0.081 1.8E-06 53.9 5.9 104 58-168 148-252 (309)
473 PRK08300 acetaldehyde dehydrog 94.3 0.14 2.9E-06 53.5 7.6 87 77-164 4-101 (302)
474 cd08271 MDR5 Medium chain dehy 94.2 0.71 1.5E-05 46.7 12.8 89 74-165 139-240 (325)
475 PRK05786 fabG 3-ketoacyl-(acyl 94.2 0.19 4.1E-06 48.9 8.3 39 75-113 3-42 (238)
476 PRK14620 NAD(P)H-dependent gly 94.2 0.18 3.8E-06 52.7 8.5 86 79-166 2-108 (326)
477 PRK11873 arsM arsenite S-adeno 94.2 0.1 2.2E-06 52.9 6.4 89 75-165 76-184 (272)
478 PRK06392 homoserine dehydrogen 94.1 0.17 3.7E-06 53.4 8.2 88 79-166 2-118 (326)
479 PRK12810 gltD glutamate syntha 94.1 0.16 3.5E-06 55.9 8.4 36 75-110 141-176 (471)
480 PLN00106 malate dehydrogenase 94.1 0.23 5E-06 52.4 9.1 67 76-143 17-97 (323)
481 cd00757 ThiF_MoeB_HesA_family 94.1 0.07 1.5E-06 53.1 5.0 37 74-110 18-55 (228)
482 PRK06349 homoserine dehydrogen 94.1 0.12 2.6E-06 56.5 7.2 85 79-163 5-103 (426)
483 PRK12742 oxidoreductase; Provi 94.1 0.29 6.2E-06 47.6 9.3 34 75-108 4-38 (237)
484 PRK04308 murD UDP-N-acetylmura 94.1 0.21 4.6E-06 54.4 9.1 69 75-143 3-78 (445)
485 PLN03209 translocon at the inn 94.1 0.17 3.6E-06 57.2 8.3 69 74-142 77-169 (576)
486 PRK15116 sulfur acceptor prote 94.1 0.082 1.8E-06 54.3 5.4 37 74-110 27-64 (268)
487 PRK03803 murD UDP-N-acetylmura 94.0 0.22 4.7E-06 54.3 9.0 69 75-143 4-79 (448)
488 PF00185 OTCace: Aspartate/orn 94.0 0.57 1.2E-05 44.2 10.7 98 76-173 1-131 (158)
489 PRK05597 molybdopterin biosynt 93.9 0.091 2E-06 56.0 5.8 37 74-110 25-62 (355)
490 PRK12779 putative bifunctional 93.9 0.14 3.1E-06 61.2 7.9 36 75-110 304-339 (944)
491 PRK12557 H(2)-dependent methyl 93.9 0.2 4.4E-06 53.1 8.2 80 88-167 31-119 (342)
492 cd08247 AST1_like AST1 is a cy 93.8 0.43 9.3E-06 49.7 10.5 89 74-164 149-259 (352)
493 PF02153 PDH: Prephenate dehyd 93.8 0.13 2.7E-06 52.3 6.3 75 92-167 1-82 (258)
494 PLN02342 ornithine carbamoyltr 93.8 1.1 2.4E-05 47.8 13.5 124 34-166 158-309 (348)
495 PRK02102 ornithine carbamoyltr 93.8 1.1 2.3E-05 47.6 13.3 123 34-165 119-274 (331)
496 PRK07326 short chain dehydroge 93.8 0.17 3.7E-06 49.3 7.0 40 75-114 4-44 (237)
497 PRK14190 bifunctional 5,10-met 93.7 0.057 1.2E-06 55.9 3.5 42 302-346 193-234 (284)
498 PRK08223 hypothetical protein; 93.6 0.13 2.7E-06 53.4 5.9 37 74-110 24-61 (287)
499 COG4221 Short-chain alcohol de 93.6 0.41 9E-06 48.4 9.3 67 75-141 4-90 (246)
500 PRK05872 short chain dehydroge 93.6 0.23 4.9E-06 50.9 7.7 41 74-114 6-47 (296)
No 1
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=100.00 E-value=9e-76 Score=595.67 Aligned_cols=287 Identities=49% Similarity=0.795 Sum_probs=281.8
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA----------------------------------------------- 33 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA----------------------------------------------- 33 (542)
||+|++||++|..+|||+|.||++|+|+|+|||
T Consensus 27 MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kGe~~ 106 (420)
T COG0499 27 MPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETL 106 (420)
T ss_pred ChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCcccHHHHHHHhhccCceEEEEcCCCH
Confidence 999999999999999999999999999999998
Q ss_pred -----------------------------------------------------------hcccccceeecCchhhhHHHH
Q psy4626 34 -----------------------------------------------------------AGKLTVPAMNVNDSVTKTKFD 54 (542)
Q Consensus 34 -----------------------------------------------------------~~~L~~PV~~vn~s~~K~~fd 54 (542)
+|.|+||+|+||||.+|++||
T Consensus 107 eeY~~~~~~vl~~~p~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTGV~RL~am~~~G~L~fPai~VNDs~tK~~FD 186 (420)
T COG0499 107 EEYYEAIDQVLDWEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRAMEKDGVLKFPAINVNDSVTKSLFD 186 (420)
T ss_pred HHHHHHHHHHhCcCCCEEEecCcceeeeeecccHHHHHHhcCCCcccchHHHHHHHHHhcCCcccceEeecchhhhcccc
Confidence 788999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626 55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134 (542)
Q Consensus 55 ~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD 134 (542)
|+|||+||.|++|+|+|+..++||+|+|+|||+||+++|++|+++||+|+|+|+||.|+.+|.++||++++++++.+.+|
T Consensus 187 NrYGtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gD 266 (420)
T COG0499 187 NRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGD 266 (420)
T ss_pred cccccchhHHHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~ 214 (542)
|+|+|||++++|+.++|..||+|++++|+|||++|||+..|.....++.++++++++|.++||+.++||++|||+||+++
T Consensus 267 ifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~Gkri~llaeGRLvNLa~a 346 (420)
T COG0499 267 IFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPDGKRIILLAEGRLVNLAAA 346 (420)
T ss_pred EEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCCCCEEEEEecceeeeeccC
Confidence 99999999999999999999999999999999999999999977888999999999999999999999999999999999
Q ss_pred -CChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCC
Q psy4626 215 -SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP 288 (542)
Q Consensus 215 -thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p 288 (542)
+||++|||+||++|+|+++|||+++ ++|.++||.||+++|++||+++|++||++||+||++|++||++|+.+|
T Consensus 347 ~GHPs~VMd~SFanQaLa~~~L~~n~-~~~~~~Vy~lP~~lD~~VArl~L~~~G~~i~~Lt~eQ~~Yl~~w~~Gt 420 (420)
T COG0499 347 TGHPSEVMDMSFANQALAQIYLVKNH-GKLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEGT 420 (420)
T ss_pred CCCcHHHhhhhHHHHHHHHHHHHhcc-cccCCceeeCcHHHHHHHHHHHHHHhCceeeecCHHHHHHhCCCCCCC
Confidence 4999999999999999999999998 899999999999999999999999999999999999999999999876
No 2
>KOG1370|consensus
Probab=100.00 E-value=3.6e-72 Score=557.27 Aligned_cols=296 Identities=64% Similarity=1.077 Sum_probs=290.4
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA----------------------------------------------- 33 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA----------------------------------------------- 33 (542)
||+||++|++|+.+|||+|+||+||+|+|++||
T Consensus 30 MPglma~r~r~~~skPlkgArI~GClH~tvqTAVLiETLv~LGAev~WssCNIfSTQdhaAAAiA~~g~Pvfawkget~e 109 (434)
T KOG1370|consen 30 MPGLMALRKRYGPSKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAEAGVPVFAWKGETEE 109 (434)
T ss_pred cchHHHHHHHhccCCCCCCCeeeeeeeeehhHHHHHHHHHHhCceeeeeecceecchhHHHHHHHhcCCceeeeccccch
Confidence 999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------hcccccceeecCchhhhHH
Q psy4626 34 -------------------------------------------------------------AGKLTVPAMNVNDSVTKTK 52 (542)
Q Consensus 34 -------------------------------------------------------------~~~L~~PV~~vn~s~~K~~ 52 (542)
.|.|.+|.++||||++|++
T Consensus 110 e~~wcie~~~~~~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGVH~Lykm~k~G~L~VPAiNVNDSVTKsK 189 (434)
T KOG1370|consen 110 EYWWCIERCLNKDGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGVHNLYKMSKNGKLKVPAINVNDSVTKSK 189 (434)
T ss_pred hhhhhhhhhhccCCCCcceeecCCCchhhhhhhhhHHHHhhhcccchhhhhhHHHHHHHHhCCceecceeeccchhhhhh
Confidence 7899999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcC
Q psy4626 53 FDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRT 132 (542)
Q Consensus 53 fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~ 132 (542)
|||.|||++|+.++++|+++.+++||.++|.|||.+|+++|++||++|++|+|+++||+.+++|.++||++++++|++++
T Consensus 190 FDnLygcreSl~DgikraTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e 269 (434)
T KOG1370|consen 190 FDNLYGCRESLLDGIKRATDVMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIRE 269 (434)
T ss_pred ccccccchhhhhhhhhhhhhheecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCccccc
Q psy4626 133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS 212 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~ 212 (542)
+||++++||++.+|..++|++||++++++|+||++.|||+.+|...++++..+++++++|.+|+|+.|.||++|||+||+
T Consensus 270 ~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~iIlLAeGRLvNL~ 349 (434)
T KOG1370|consen 270 VDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHIILLAEGRLVNLG 349 (434)
T ss_pred CCEEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEEEEEecCceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCCC
Q psy4626 213 CSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKP 291 (542)
Q Consensus 213 ~~t-hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~a 291 (542)
|++ ||+++|+.||++|+|+|++||+++.++|+.+||.||+.+||.||++||.+||.++++||++||+|||+...+|||+
T Consensus 350 CatghpSFvmS~sftnQvlAqIeLwt~p~~kY~~~V~~LPKklDE~VA~lHL~kl~~kLTkLt~~Qa~YlG~~~~gPfKp 429 (434)
T KOG1370|consen 350 CATGHPSFVMSNSFTNQVLAQIELWTAPEGKYKVGVYVLPKKLDEYVASLHLGKLGAKLTKLTDKQAKYLGLSKDGPFKP 429 (434)
T ss_pred cccCCCceEEecchHHHHHHHHHHhcCCCCccccceEecchhhHHHHHHhhhhhhchhhhhhhHHHHHhcCCCcCCCCCC
Confidence 996 9999999999999999999999987799999999999999999999999999999999999999999999999999
Q ss_pred Ccccc
Q psy4626 292 SYYSM 296 (542)
Q Consensus 292 ~ea~m 296 (542)
..+++
T Consensus 430 dhYRY 434 (434)
T KOG1370|consen 430 DHYRY 434 (434)
T ss_pred CCCCC
Confidence 87653
No 3
>PLN02494 adenosylhomocysteinase
Probab=100.00 E-value=4.8e-64 Score=535.71 Aligned_cols=259 Identities=51% Similarity=0.909 Sum_probs=247.2
Q ss_pred ccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626 36 KLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ 115 (542)
Q Consensus 36 ~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~ 115 (542)
.|.+||++||||.+|++|||+|||+||+|++++|.++..+.|++|+|+|||+||+++|++++++|++|+++|++|.++.+
T Consensus 213 ~L~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e 292 (477)
T PLN02494 213 TLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ 292 (477)
T ss_pred CCCCCEEEEcChhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence 48999999999999999999999999999999999999899999999999999999999999999999999999998888
Q ss_pred hhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCC-cceeeeccceeeEec
Q psy4626 116 ACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LTWEKVRSQVDHVIW 194 (542)
Q Consensus 116 A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~-l~v~~~~~~v~~y~~ 194 (542)
+.+.|+.+++++++++.+|+||+|+|++++++.++|+.||+|++++|+||++.+||..+|.... +...+++++++.|.+
T Consensus 293 A~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~ 372 (477)
T PLN02494 293 ALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVF 372 (477)
T ss_pred HHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEc
Confidence 8899999889999999999999999999999889999999999999999999999999998653 777888899999999
Q ss_pred CC-CCEEEEecCCCcccccCC-CChhHHHhhHHHHHHHHHHHHhcC--CCCCCCCccccCChhhHHHHHHhcCCcccccc
Q psy4626 195 PD-GKRIVLLAEGRLVNLSCS-SLPSFVVSITACTQALALIELFNA--PSGRYKSDVYLLPKKMDEYVASLHLPTFDAHL 270 (542)
Q Consensus 195 ~d-g~~I~LLa~GrLvnl~~~-thp~~vmd~sfa~q~la~~~L~~~--~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i 270 (542)
+| |+.|+||++||++||+|+ +||++|||+||++|+|++++||++ . ++|+++||.||+++|++||++||++||++|
T Consensus 373 ~d~g~~i~ll~eGrlvNl~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~-~~~~~~v~~lP~~~D~~vA~~~L~~~g~~~ 451 (477)
T PLN02494 373 PDTGSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKS-GKYEKKVYVLPKHLDEKVAALHLGKLGAKL 451 (477)
T ss_pred CCCCCEEEEEeCCccccccCCCCCCcceeeHHHHHHHHHHHHHHhcccc-cccCCCcEECCHHHHHHHHHHHHHHcCCcc
Confidence 99 999999999999999999 599999999999999999999998 4 689999999999999999999999999999
Q ss_pred ccccHHHHhhcCCCCCCCCCCCccc
Q psy4626 271 TELSDEQAKYMGLNKAGPFKPSYYS 295 (542)
Q Consensus 271 ~~lt~~~a~~lg~~e~~p~~a~ea~ 295 (542)
|+||++|++||++...+|||.-.++
T Consensus 452 ~~lt~~Q~~yl~~~~~gp~k~~~y~ 476 (477)
T PLN02494 452 TKLSKDQADYINVPVEGPYKPAHYR 476 (477)
T ss_pred ccCCHHHHHhcCCCcCCCCCccccC
Confidence 9999999999999999999987654
No 4
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=100.00 E-value=2.4e-62 Score=518.96 Aligned_cols=287 Identities=45% Similarity=0.742 Sum_probs=274.6
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA----------------------------------------------- 33 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA----------------------------------------------- 33 (542)
||+|++++++|..+|||+|.||++|+|+|+|||
T Consensus 14 mp~l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~ 93 (406)
T TIGR00936 14 MPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNE 93 (406)
T ss_pred CHHHHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCHH
Confidence 999999999999999999999999999999998
Q ss_pred ----------------------------------------------------------hcccccceeecCchhhhHHHHh
Q psy4626 34 ----------------------------------------------------------AGKLTVPAMNVNDSVTKTKFDN 55 (542)
Q Consensus 34 ----------------------------------------------------------~~~L~~PV~~vn~s~~K~~fd~ 55 (542)
++.|.+||++||||.+|++|||
T Consensus 94 ey~~~~~~~l~~~p~~iiDdGgdl~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn 173 (406)
T TIGR00936 94 EYYWAIEQVLDHEPNIIIDDGADLIFLLHTERPELLEKIIGGSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTKSLFDN 173 (406)
T ss_pred HHHHHHHHHhcCCCCEEEecccHHHHHHHHhhhhhhhccEEEeecchHHHHHHHHHHHcCCCCCcEEEecchhhchhhhc
Confidence 4679999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcE
Q psy4626 56 LYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135 (542)
Q Consensus 56 ~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDv 135 (542)
+|||++|.|+++.|+++..+.|++|+|+|||+||+.+|+.|+++|++|+++|+||.|+.++.+.|+.+.+++++++.+|+
T Consensus 174 ~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDV 253 (406)
T TIGR00936 174 RYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDI 253 (406)
T ss_pred ccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCE
Confidence 99999999999999988889999999999999999999999999999999999999988899999998889999999999
Q ss_pred EEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCC
Q psy4626 136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS 215 (542)
Q Consensus 136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~t 215 (542)
||+++|++++++.++|..||+|++++|+||++.|+|.++|.....+..+++++++.|.+|||+.|++|++||++||++++
T Consensus 254 VItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g~~i~ll~~GrlvNl~~~~ 333 (406)
T TIGR00936 254 FITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDGRRIYLLAEGRLVNLAAAE 333 (406)
T ss_pred EEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCCCEEEEEeCCceecccCCC
Confidence 99999999999888999999999999999999999999997655566678889999999999999999999999999994
Q ss_pred -ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCC
Q psy4626 216 -LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP 288 (542)
Q Consensus 216 -hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p 288 (542)
||+++||+||++|+|++++|++++ ++++++||.||+++|++||++||++||++||+||++|++||++|+.+|
T Consensus 334 ghp~~vmd~sfa~q~la~~~l~~~~-~~~~~~v~~lp~~~d~~va~~~l~~~g~~~~~lt~~q~~y~~~~~~g~ 406 (406)
T TIGR00936 334 GHPSEVMDMSFANQALAAEYLWKNH-DKLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQKEYLGSWEEGT 406 (406)
T ss_pred CCcceeeCHHHHHHHHHHHHHHhcc-cccCCCeEECCHHHHHHHHHHHHHHcCceeccCCHHHHHHhcCCcCCC
Confidence 999999999999999999999987 799999999999999999999999999999999999999999998765
No 5
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=100.00 E-value=4.6e-61 Score=514.07 Aligned_cols=261 Identities=54% Similarity=0.928 Sum_probs=248.8
Q ss_pred cccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626 35 GKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 114 (542)
Q Consensus 35 ~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~ 114 (542)
+.|.+||++||++.+|+.||+.||+++|+++++.|.++..+.|++|+|+|+|+||+.+|++|+++|++|+++|++|.+..
T Consensus 212 g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~ 291 (476)
T PTZ00075 212 GELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICAL 291 (476)
T ss_pred CCCCceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCC-cceeeeccceeeEe
Q psy4626 115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LTWEKVRSQVDHVI 193 (542)
Q Consensus 115 ~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~-l~v~~~~~~v~~y~ 193 (542)
++.++|+.+.+++++++.+|+||+++|++++|+.++|++||+|++++|+||++.|+++.+|.... +++.++++.+..|+
T Consensus 292 ~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 292 QAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred HHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCCceeecccCCCCeEE
Confidence 78888999999999999999999999999999999999999999999999999999999988644 88899999999999
Q ss_pred cCCCCEEEEecCCCcccccCCC-ChhHHHhhHHHHHHHHHHHHhcCCCC--CCCCccccCChhhHHHHHHhcCCcccccc
Q psy4626 194 WPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSG--RYKSDVYLLPKKMDEYVASLHLPTFDAHL 270 (542)
Q Consensus 194 ~~dg~~I~LLa~GrLvnl~~~t-hp~~vmd~sfa~q~la~~~L~~~~~~--~~~~gv~~lp~~~d~~VA~l~L~~lg~~i 270 (542)
+|||+.|+||++||++||+|++ ||++|||+||++|+|++++|++++ + +|+++||.||+++|++||++||++||++|
T Consensus 372 ~~~g~~i~llaeGrlvNl~~~~GhP~~vMd~sfa~Q~la~~~l~~~~-~~~~~~~~v~~lp~~~d~~vA~~~L~~~g~~~ 450 (476)
T PTZ00075 372 FPDGKGIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENR-DTGKYPNGVYKLPKELDEKVARLHLKKLGAKL 450 (476)
T ss_pred eCCCCEEEEEeCCCccccCCCCCCCeeEeeHHHHHHHHHHHHHHhcc-CccccCCceEECCHHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999994 999999999999999999999987 5 89999999999999999999999999999
Q ss_pred ccccHHHHhhcCCCCCCCCCCCcccc
Q psy4626 271 TELSDEQAKYMGLNKAGPFKPSYYSM 296 (542)
Q Consensus 271 ~~lt~~~a~~lg~~e~~p~~a~ea~m 296 (542)
|+||++|++|||+...+|||.-.+++
T Consensus 451 ~~lt~~q~~yl~~~~~gp~k~~~y~y 476 (476)
T PTZ00075 451 TKLTDKQAEYIGVPVDGPYKSDHYRY 476 (476)
T ss_pred ccCCHHHHHhcCCCCCCCCCccccCC
Confidence 99999999999999999999876643
No 6
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=100.00 E-value=4.1e-61 Score=512.19 Aligned_cols=289 Identities=54% Similarity=0.912 Sum_probs=278.4
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA----------------------------------------------- 33 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA----------------------------------------------- 33 (542)
||+|++++++|..+|||+|.||++|+|++++||
T Consensus 30 mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~vaaaL~~~gi~v~a~~~~~~~ 109 (425)
T PRK05476 30 MPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLE 109 (425)
T ss_pred CHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHHHHHHHHCCceEEecCCCCHH
Confidence 999999999999999999999999999999998
Q ss_pred -----------------------------------------------------------hcccccceeecCchhhhHHHH
Q psy4626 34 -----------------------------------------------------------AGKLTVPAMNVNDSVTKTKFD 54 (542)
Q Consensus 34 -----------------------------------------------------------~~~L~~PV~~vn~s~~K~~fd 54 (542)
++.|.+||++||+|.+|++||
T Consensus 110 ey~~~~~~~l~~~~p~iiiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~d 189 (425)
T PRK05476 110 EYWECIERALDGHGPNMILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFD 189 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCcccCcccc
Confidence 468999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626 55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134 (542)
Q Consensus 55 ~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD 134 (542)
|+|||++|+|++++++++..+.|++|+|+|||+||+.+|+.|+++|++|+++|++|.++.++.+.|+++.+++++++++|
T Consensus 190 n~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aD 269 (425)
T PRK05476 190 NRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGD 269 (425)
T ss_pred ccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCC
Confidence 99999999999999998888899999999999999999999999999999999999998888888999888999999999
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~ 214 (542)
+||+++|++++++.++|+.||+|++++|+|+++.|+++++|........++++++++|.+|||+.++||++||++||+++
T Consensus 270 VVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~GrlvNl~~~ 349 (425)
T PRK05476 270 IFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEGRLVNLGAA 349 (425)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCCcccccCCC
Confidence 99999999999988899999999999999999999999999876677888999999999999999999999999999999
Q ss_pred -CChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCC
Q psy4626 215 -SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFK 290 (542)
Q Consensus 215 -thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~ 290 (542)
+||+++||+||++|+|++++|+++. ++++++||.||+++|++||++||++||++||+||++|++||+.|+.+|+|
T Consensus 350 ~ghp~~vmd~sfa~q~l~~~~l~~~~-~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~~ 425 (425)
T PRK05476 350 TGHPSEVMDMSFANQALAQIELFTNR-GKLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQAEYIGVWVEGPFK 425 (425)
T ss_pred CCCcceeeCHHHHHHHHHHHHHHhcc-CcCCCCeEECCHHHHHHHHHHHHHHcCCccccCCHHHHHHcCCCcCCCCC
Confidence 5999999999999999999999987 79999999999999999999999999999999999999999999999986
No 7
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=100.00 E-value=2.4e-57 Score=482.22 Aligned_cols=287 Identities=55% Similarity=0.960 Sum_probs=275.1
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhh-----------------------------------------------
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA----------------------------------------------- 33 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA----------------------------------------------- 33 (542)
||+|++++++|..+|||+|.||++|+|+|+|||
T Consensus 18 mp~l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~ 97 (413)
T cd00401 18 MPGLMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLE 97 (413)
T ss_pred CHHHHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHH
Confidence 999999999999999999999999999999998
Q ss_pred -------------------------------------------------------------hcccccceeecCchhhhHH
Q psy4626 34 -------------------------------------------------------------AGKLTVPAMNVNDSVTKTK 52 (542)
Q Consensus 34 -------------------------------------------------------------~~~L~~PV~~vn~s~~K~~ 52 (542)
++.|++||++||||.+|++
T Consensus 98 ~y~~~~~~~l~~~~~~p~~i~DdGg~~~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vnds~~K~~ 177 (413)
T cd00401 98 EYWWCIEQALKFPDGEPNMILDDGGDLTLLIHKKHPELLPGIRGISEETTTGVHRLYKMEKEGKLKFPAINVNDSVTKSK 177 (413)
T ss_pred HHHHHHHHHHhccCCCCcEEEecchHHHHHHHhhhhhhhhccEEEeecchHHHHHHHHHHHCCCCCCCEEEecchhhccc
Confidence 4679999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcC
Q psy4626 53 FDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRT 132 (542)
Q Consensus 53 fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~ 132 (542)
|||+|||+||+|+++.|.++..+.|++|+|+|+|+||+.+++.++++|++|+++|++|.|+.+|.+.|++++++++++++
T Consensus 178 ~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~ 257 (413)
T cd00401 178 FDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKE 257 (413)
T ss_pred ccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcC
Confidence 99999999999999999999889999999999999999999999999999999999999999999999988888888899
Q ss_pred CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCccccc
Q psy4626 133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLS 212 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~ 212 (542)
+|+||+|+|++++++.++++.||+|++++|+|+++.++|+..+..+++++.++++++..|.+++|+.|.+|++|+++|+.
T Consensus 258 aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~ 337 (413)
T cd00401 258 GDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLG 337 (413)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCc
Confidence 99999999999999877799999999999999999999999999889999999988888888989999999999999999
Q ss_pred CC-CChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCC
Q psy4626 213 CS-SLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP 288 (542)
Q Consensus 213 ~~-thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p 288 (542)
+. |||+++||++|++|+++..+++.++ +++.++|+.+|+++|++||++||++||++||+||++|.+||++|+.+|
T Consensus 338 ~~~gH~~~vmd~sf~~q~l~a~~l~~~~-~~~~~kV~~~p~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~ 413 (413)
T cd00401 338 CATGHPSFVMSNSFTNQVLAQIELWTNR-DKYEVGVYFLPKKLDEEVARLHLGKLGVKLTKLTDKQAEYLGVPVEGP 413 (413)
T ss_pred ccCCCccceechhHHHHHHHHHHHHhcC-CcCCCcEEECCHHHHHHHHHHHHHhcCceeccCCHHHHHHhcCCcCCC
Confidence 87 7999999999999999999999987 678899999999999999999999999999999999999999998775
No 8
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=100.00 E-value=3.8e-56 Score=452.50 Aligned_cols=299 Identities=30% Similarity=0.460 Sum_probs=226.9
Q ss_pred cCcEEEEEcCChhH--HHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCceeeCHHHHh-cCCcEEEEcCCCccc-C---C
Q psy4626 76 GGKQVVLCGYGEVG--KGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVVKLNEVI-RTVDIVVTATGNKNV-V---T 147 (542)
Q Consensus 76 ~GktVvViG~G~IG--~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-~~aDvVi~atG~~~l-I---~ 147 (542)
.|..|...++.|.. ..+|.+++.. |..|+++.- . ....+...++.++ ..+|++++..|..-. + .
T Consensus 68 ~GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kG--e------~~eeY~~~~~~vl~~~p~iiiDDG~D~~~~vh~~~ 139 (420)
T COG0499 68 GGAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKG--E------TLEEYYEAIDQVLDWEPNIIIDDGGDLTKLVHLER 139 (420)
T ss_pred cCceEEEecCCCCcccHHHHHHHhhccCceEEEEcC--C------CHHHHHHHHHHHhCcCCCEEEecCcceeeeeeccc
Confidence 35666666666665 4555555433 666666521 0 0000112233344 468999997663211 1 2
Q ss_pred HHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHH
Q psy4626 148 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACT 227 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~ 227 (542)
.+.++.++.+.....+| +.+|+ .+..+|.|.. |...++.|..+
T Consensus 140 ~~l~~~i~G~tEETTTG-------V~RL~------------------------am~~~G~L~f------Pai~VNDs~tK 182 (420)
T COG0499 140 PELLDAIKGGTEETTTG-------VHRLR------------------------AMEKDGVLKF------PAINVNDSVTK 182 (420)
T ss_pred HHHHHHhcCCCcccchH-------HHHHH------------------------HHHhcCCccc------ceEeecchhhh
Confidence 45566777777777777 45554 2444555555 66666777777
Q ss_pred HHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcC----Cc---ccc-ccccccHHHHhhcCC----CCCCCCCCCccc
Q psy4626 228 QALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHL----PT---FDA-HLTELSDEQAKYMGL----NKAGPFKPSYYS 295 (542)
Q Consensus 228 q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L----~~---lg~-~i~~lt~~~a~~lg~----~e~~p~~a~ea~ 295 (542)
++|+ ++|..+-.. +|--.....+ +. .|- -.++=.+.+++++|+ +|+||+||+||+
T Consensus 183 ------~~FD---NrYGtgqS~----~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~ 249 (420)
T COG0499 183 ------SLFD---NRYGTGQSL----LDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA 249 (420)
T ss_pred ------cccc---cccccchhH----HHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh
Confidence 7777 467775322 2211111111 11 111 445556999999999 699999999999
Q ss_pred cCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCCcceecccCCeeEEEcCCC
Q psy4626 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDG 375 (542)
Q Consensus 296 mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g 375 (542)
||||+||+|+||++.+|||||+|||++||+.|||..|||||||||+||||+|||+++|+++++++.++||+|++|++|||
T Consensus 250 MdGf~V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~G 329 (420)
T COG0499 250 MDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPDG 329 (420)
T ss_pred hcCcEEEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccCCCcchhhHH---HHHHHHHHHhhcc
Q psy4626 376 KRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKSSLIPCYHLR---FASNLAKYLLNSL 432 (542)
Q Consensus 376 ~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~~l~~~~~~~---~~~~va~~~l~~~ 432 (542)
|++|||+|||||||+||+ ||+||||+||++| ++++.++|+||.+ +|++|||++|.+|
T Consensus 330 kri~llaeGRLvNLa~a~GHPs~VMd~SFanQaLa~~~L~~n~~~~~~~Vy~lP~~lD~~VArl~L~~~ 398 (420)
T COG0499 330 KRIILLAEGRLVNLAAATGHPSEVMDMSFANQALAQIYLVKNHGKLEPGVYRLPKELDEEVARLKLEAM 398 (420)
T ss_pred CEEEEEecceeeeeccCCCCcHHHhhhhHHHHHHHHHHHHhcccccCCceeeCcHHHHHHHHHHHHHHh
Confidence 999999999999999998 9999999999994 7788999999999 9999999999987
No 9
>KOG1370|consensus
Probab=100.00 E-value=1.5e-47 Score=381.37 Aligned_cols=105 Identities=70% Similarity=1.359 Sum_probs=103.3
Q ss_pred CCCcEEeecCCCHHHHHHHHHHHh--hcCCCceeecCCCchhhhhhhhccccccccceeccchhhHHHHHHHHHHcCCcc
Q psy4626 437 TGLPVFAWRGETEEDFWWCIDKCV--NSWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLT 514 (542)
Q Consensus 437 ~g~~v~a~~g~~~~ey~~~~~~~~--~~~~p~~i~ddg~d~~~~~h~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~l~ 514 (542)
.|+|||||||||+|||||||++++ ++|+||||+|||||+|+++|+|||+++++|+|+||||||||||||+|.++|+|+
T Consensus 96 ~g~Pvfawkget~ee~~wcie~~~~~~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGVH~Lykm~k~G~L~ 175 (434)
T KOG1370|consen 96 AGVPVFAWKGETEEEYWWCIERCLNKDGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGVHNLYKMSKNGKLK 175 (434)
T ss_pred cCCceeeeccccchhhhhhhhhhhccCCCCcceeecCCCchhhhhhhhhHHHHhhhcccchhhhhhHHHHHHHHhCCcee
Confidence 899999999999999999999998 478999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccccccccccccCCCCcccCC
Q psy4626 515 VPAMNVNDSVTKTKFDNLYMCRESIID 541 (542)
Q Consensus 515 ~p~i~vnd~~~k~~fdn~yg~~~s~~d 541 (542)
+|+||||||+|||||||+||||||++|
T Consensus 176 VPAiNVNDSVTKsKFDnLygcreSl~D 202 (434)
T KOG1370|consen 176 VPAINVNDSVTKSKFDNLYGCRESLLD 202 (434)
T ss_pred cceeeccchhhhhhccccccchhhhhh
Confidence 999999999999999999999999998
No 10
>PLN02494 adenosylhomocysteinase
Probab=100.00 E-value=2.7e-40 Score=353.52 Aligned_cols=365 Identities=25% Similarity=0.402 Sum_probs=264.4
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV 80 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV 80 (542)
||+|++|+++|..+|||+|.||++|+|+|+|||. ..+ .+ .-.|..|
T Consensus 28 mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~------------------------L~~----tL------~~~GA~v 73 (477)
T PLN02494 28 MPGLMACRTEFGPSQPFKGARITGSLHMTIQTAV------------------------LIE----TL------TALGAEV 73 (477)
T ss_pred CHHHHHHHHHhhccCCCCCCEEEEEEechHHHHH------------------------HHH----HH------HHcCCEE
Confidence 9999999999999999999999999999999998 111 11 2359999
Q ss_pred EEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-----cCCcEEEEcCCCcc-cCCHH-HH
Q psy4626 81 VLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-----RTVDIVVTATGNKN-VVTRE-HM 151 (542)
Q Consensus 81 vViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-----~~aDvVi~atG~~~-lI~~e-~l 151 (542)
.+.|++|.. ..+|.+|+..|+.|++|.--. ..+ +...++.++ .++|++++..|.-- ++... .+
T Consensus 74 ~~~~~Np~sTqd~vaaal~~~gi~vfa~~g~~--~~e------y~~~~~~~l~~~~~~~p~~i~DDG~dl~~~~h~~~~~ 145 (477)
T PLN02494 74 RWCSCNIFSTQDHAAAAIARDSAAVFAWKGET--LQE------YWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKA 145 (477)
T ss_pred EEEcCCCccchHHHHHHHHhCCceEEEecCCC--HHH------HHHHHHHHHcCCCCCCCCEEEeCCchHHHHHHhchhh
Confidence 999999987 789999999999999984211 110 112233343 24899999766411 11100 01
Q ss_pred hc-cCCCeEEEeccCCCc-c--cChHhhcC----CC-----c--ceee----eccceeeEecCCCCEEEEecCCCccccc
Q psy4626 152 DK-MKNGCVVCNMGHSNT-E--IDVNSLRT----PD-----L--TWEK----VRSQVDHVIWPDGKRIVLLAEGRLVNLS 212 (542)
Q Consensus 152 ~~-mk~GailvnvG~g~~-e--id~~aL~~----~~-----l--~v~~----~~~~v~~y~~~dg~~I~LLa~GrLvnl~ 212 (542)
+. -+..+.+-+....+. + ..+..|.. .. + .+.+ .+.++.++. .+-.+|.|..
T Consensus 146 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~EeTttGv~Rl~-------~m~~~g~L~~-- 216 (477)
T PLN02494 146 EEEFEKDGTLPDPTSTDNAEFKIVLTIIKDGLKVDPKKYHKMKERLVGVSEETTTGVKRLY-------QMQKNGTLLF-- 216 (477)
T ss_pred hhcccccccCCCCCCcccHHHHHHHHHHHHHHhhCcchhhHHHHhhcCCcccccHHHHHHH-------HHHHCCCCCC--
Confidence 11 001122212111110 0 00111110 00 0 0000 111112211 2334566655
Q ss_pred CCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHH----hcCCcccc----ccccccHHHHhhcCC-
Q psy4626 213 CSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVAS----LHLPTFDA----HLTELSDEQAKYMGL- 283 (542)
Q Consensus 213 ~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~----l~L~~lg~----~i~~lt~~~a~~lg~- 283 (542)
|+..++.+..+ ++|+ +.|..+-.. +|--... +..++.++ .|++..+.+++++|+
T Consensus 217 ----Pvi~vnds~~K------~~fD---n~yGtgqS~----~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~ 279 (477)
T PLN02494 217 ----PAINVNDSVTK------SKFD---NLYGCRHSL----PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGAR 279 (477)
T ss_pred ----CEEEEcChhhh------hhhh---ccccccccH----HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCE
Confidence 77777888877 4555 345544222 2222222 23355554 899999999999999
Q ss_pred ---CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCC-cc
Q psy4626 284 ---NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LT 359 (542)
Q Consensus 284 ---~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~-~~ 359 (542)
++.||.++.+|.|+||.+++++++++.+||||++||++++|+.++|+.||+|++|+|+|||+.|||.++|.+.+ .+
T Consensus 280 VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~ 359 (477)
T PLN02494 280 VIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVK 359 (477)
T ss_pred EEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccc
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999975 88
Q ss_pred eecccCCeeEEEcCC-CCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cc--cCCCcchhhHH---HHHHH
Q psy4626 360 WEKVRSQVDHVIWPD-GKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RD--KSSLIPCYHLR---FASNL 424 (542)
Q Consensus 360 ~~~~~~~v~~~~~~~-g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~--~~~l~~~~~~~---~~~~v 424 (542)
+.+++|+|+.|.++| ||+||||+|||||||+||+ ||+||||++|++| ++ ++.|+|+||+| +|++|
T Consensus 360 ~~~i~~~vd~y~~~d~g~~i~ll~eGrlvNl~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~~~~~~~v~~lP~~~D~~v 439 (477)
T PLN02494 360 RITIKPQTDRWVFPDTGSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKV 439 (477)
T ss_pred eeccCCCceEEEcCCCCCEEEEEeCCccccccCCCCCCcceeeHHHHHHHHHHHHHHhcccccccCCCcEECCHHHHHHH
Confidence 999999999999999 9999999999999999998 9999999999995 33 57899999999 99999
Q ss_pred HHHHhhccC
Q psy4626 425 AKYLLNSLT 433 (542)
Q Consensus 425 a~~~l~~~~ 433 (542)
|++||++|-
T Consensus 440 A~~~L~~~g 448 (477)
T PLN02494 440 AALHLGKLG 448 (477)
T ss_pred HHHHHHHcC
Confidence 999999984
No 11
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=100.00 E-value=3e-40 Score=352.29 Aligned_cols=165 Identities=38% Similarity=0.625 Sum_probs=158.5
Q ss_pred ccccccHHHHhhcCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCC
Q psy4626 269 HLTELSDEQAKYMGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 344 (542)
Q Consensus 269 ~i~~lt~~~a~~lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~ 344 (542)
.+++....+++++|+ ++.||.|+.+|.++||++++++++++.+|+||++||++++|+.++|..||+|++++|+|||
T Consensus 222 ~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 222 DVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHF 301 (425)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCC
Confidence 889999999999999 4788999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCcceecccCCeeEEEcCCCCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccCCCcch
Q psy4626 345 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKSSLIPC 415 (542)
Q Consensus 345 ~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~~l~~~ 415 (542)
+.|||+++|++.+.+++++||+|++|++||||++|||+|||+|||+||+ ||+|+||++|++| ++++.|+||
T Consensus 302 d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lLa~GrlvNl~~~~ghp~~vmd~sfa~q~l~~~~l~~~~~~~~~~ 381 (425)
T PRK05476 302 DNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILLAEGRLVNLGAATGHPSEVMDMSFANQALAQIELFTNRGKLEPG 381 (425)
T ss_pred CCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEEeCCcccccCCCCCCcceeeCHHHHHHHHHHHHHHhccCcCCCC
Confidence 9999999999999999999999999999999999999999999999998 9999999999994 567899999
Q ss_pred hhHH---HHHHHHHHHhhccC
Q psy4626 416 YHLR---FASNLAKYLLNSLT 433 (542)
Q Consensus 416 ~~~~---~~~~va~~~l~~~~ 433 (542)
||++ +|++||++||++|-
T Consensus 382 v~~lp~~~d~~vA~~~l~~~g 402 (425)
T PRK05476 382 VYVLPKELDEEVARLKLKALG 402 (425)
T ss_pred eEECCHHHHHHHHHHHHHHcC
Confidence 9999 99999999999984
No 12
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=100.00 E-value=2.6e-40 Score=350.97 Aligned_cols=299 Identities=29% Similarity=0.432 Sum_probs=221.7
Q ss_pred cCcEEEEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-cCCcEEEEcCCCcc-cC---CH
Q psy4626 76 GGKQVVLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-RTVDIVVTATGNKN-VV---TR 148 (542)
Q Consensus 76 ~GktVvViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-~~aDvVi~atG~~~-lI---~~ 148 (542)
.|..|.+.|++|.. ..+|.+|+..|.+|+.+.- ... .+ +...++.++ .++|+++++.|.-. ++ .+
T Consensus 55 ~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~-~~~-~e------y~~~~~~~l~~~p~~iiDdGgdl~~~~~~~~~ 126 (406)
T TIGR00936 55 GGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRG-ETN-EE------YYWAIEQVLDHEPNIIIDDGADLIFLLHTERP 126 (406)
T ss_pred cCCEEEEEccCCccccHHHHHHHHhCCceEEEecC-CCH-HH------HHHHHHHHhcCCCCEEEecccHHHHHHHHhhh
Confidence 35666666666544 4566666666666666521 000 00 011233444 57899999877411 11 12
Q ss_pred HHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHH
Q psy4626 149 EHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQ 228 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q 228 (542)
+.+..+..++....+| +.+++ .+..+|.|.. |+..++.+.++
T Consensus 127 ~~~~~~~G~~EeTttG-------v~rl~------------------------~~~~~~~L~~------Pvi~vnds~~K- 168 (406)
T TIGR00936 127 ELLEKIIGGSEETTTG-------VIRLR------------------------AMEAEGVLKF------PAINVNDAYTK- 168 (406)
T ss_pred hhhhccEEEeecchHH-------HHHHH------------------------HHHHcCCCCC------cEEEecchhhc-
Confidence 3344455555555555 33332 1333344444 66666777766
Q ss_pred HHHHHHHhcCCCCCCCCccccCChhhHHHHHH-----hcCCcccc----ccccccHHHHhhcCC----CCCCCCCCCccc
Q psy4626 229 ALALIELFNAPSGRYKSDVYLLPKKMDEYVAS-----LHLPTFDA----HLTELSDEQAKYMGL----NKAGPFKPSYYS 295 (542)
Q Consensus 229 ~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~-----l~L~~lg~----~i~~lt~~~a~~lg~----~e~~p~~a~ea~ 295 (542)
++|+ ++|..+...+ |. +.+ +..++.++ .++.....+++++|+ ++.||.|+.+|.
T Consensus 169 -----~~fD---n~yg~g~s~~----~~-i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~ 235 (406)
T TIGR00936 169 -----SLFD---NRYGTGQSTI----DG-ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA 235 (406)
T ss_pred -----hhhh---cccccchhHH----HH-HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH
Confidence 4555 3465553321 21 221 22344444 889999999999999 477999999999
Q ss_pred cCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCCcceecccCCeeEEEcCCC
Q psy4626 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDG 375 (542)
Q Consensus 296 mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g 375 (542)
|+||++++++|+++.+||||++||++++|+.++|..||+|++++|+|||++|||.++|.+.+.+++++|++|++|.+|||
T Consensus 236 ~~G~~v~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g 315 (406)
T TIGR00936 236 MDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDG 315 (406)
T ss_pred hcCCEeCCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccCCCcchhhHH---HHHHHHHHHhhccC
Q psy4626 376 KRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKSSLIPCYHLR---FASNLAKYLLNSLT 433 (542)
Q Consensus 376 ~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~~l~~~~~~~---~~~~va~~~l~~~~ 433 (542)
|+||||+|||+|||+||+ ||+|+||++|++| +++++|+||||++ +|++||++||++|-
T Consensus 316 ~~i~ll~~GrlvNl~~~~ghp~~vmd~sfa~q~la~~~l~~~~~~~~~~v~~lp~~~d~~va~~~l~~~g 385 (406)
T TIGR00936 316 RRIYLLAEGRLVNLAAAEGHPSEVMDMSFANQALAAEYLWKNHDKLEPGVYRLPKELDEMVARLKLEAMG 385 (406)
T ss_pred CEEEEEeCCceecccCCCCCcceeeCHHHHHHHHHHHHHHhcccccCCCeEECCHHHHHHHHHHHHHHcC
Confidence 999999999999999998 9999999999994 5667899999999 99999999999984
No 13
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=100.00 E-value=4.4e-39 Score=344.98 Aligned_cols=364 Identities=29% Similarity=0.428 Sum_probs=254.4
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV 80 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV 80 (542)
||+|++++++|..+|||+|.||++|+|+|+|||. .-+ .+ .-.|..|
T Consensus 27 mP~L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~------------------------l~~----tL------~~~GA~v 72 (476)
T PTZ00075 27 MPGLMALREEYGPSKPLKGARITGCLHMTVQTAV------------------------LIE----TL------KALGAEV 72 (476)
T ss_pred CHHHHHHHHHHhccCCCCCCEEEEEEcchHHHHH------------------------HHH----HH------HHcCCEE
Confidence 9999999999999999999999999999999997 011 21 1248999
Q ss_pred EEEcCChhH--HHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCceeeCHHHHhc-----CCcEEEEcCCCccc-CC-HHH
Q psy4626 81 VLCGYGEVG--KGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVVKLNEVIR-----TVDIVVTATGNKNV-VT-REH 150 (542)
Q Consensus 81 vViG~G~IG--~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~-----~aDvVi~atG~~~l-I~-~e~ 150 (542)
.+.|+++.. ..+|.+++..| +.|+++.--. ..+ +...++.++. ++|+++++.|.--. +. ...
T Consensus 73 ~~~~~n~~stqD~~aaal~~~g~i~vfa~~g~t--~ee------y~~~~~~~l~~~~~~~p~~i~DdG~dl~~~~~~g~~ 144 (476)
T PTZ00075 73 RWCSCNIFSTQDHAAAAIAKAGSVPVFAWKGET--LEE------YWWCTEQALKWPNGDGPNLIVDDGGDATLLVHEGVK 144 (476)
T ss_pred EEEcCCCCccccHHHHHHHhcCCeEEEEecCCC--HHH------HHHHHHHHHhccCCCCCCEEEECCcHHHHHHHhhhH
Confidence 999999976 67888888888 9999984211 010 1122344442 69999998774211 11 011
Q ss_pred Hhcc--CCCeEEEeccCCCc-c--cChHhhcCCCc------------ceee----eccceeeEecCCCCEEEEecCCCcc
Q psy4626 151 MDKM--KNGCVVCNMGHSNT-E--IDVNSLRTPDL------------TWEK----VRSQVDHVIWPDGKRIVLLAEGRLV 209 (542)
Q Consensus 151 l~~m--k~GailvnvG~g~~-e--id~~aL~~~~l------------~v~~----~~~~v~~y~~~dg~~I~LLa~GrLv 209 (542)
++.. +.|.+ -.....+. + .-+..|+. .+ .+.+ .+.++.++. .+..+|.|.
T Consensus 145 ~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~G~~EeTttGv~rl~-------~m~~~g~L~ 215 (476)
T PTZ00075 145 AEKLYEEKGIL-PDPLDPSNEDEKCLLTVLKK-LLTKNPDKWTNLVKKIVGVSEETTTGVHRLY-------KMLKKGELL 215 (476)
T ss_pred hhhcccccccc-CCCcccccHHHHHHHHHHhh-hhhcCchhhhhhhhccEeeeecchHHHHHHH-------HHHHCCCCC
Confidence 2222 11211 12222111 1 11111110 00 0011 111112211 122334432
Q ss_pred cccCC--C-ChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcC
Q psy4626 210 NLSCS--S-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMG 282 (542)
Q Consensus 210 nl~~~--t-hp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg 282 (542)
.-... . ..-.+.|..++.-.-....+++.. ++ .+..+++++ .|++..+++++++|
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~------~~------------~LaGKtVgVIG~G~IGr~vA~rL~a~G 277 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRAT------DV------------MIAGKTVVVCGYGDVGKGCAQALRGFG 277 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhc------CC------------CcCCCEEEEECCCHHHHHHHHHHHHCC
Confidence 21111 1 222233333332111112233321 00 234455555 89999999999999
Q ss_pred C----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccCCC-
Q psy4626 283 L----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD- 357 (542)
Q Consensus 283 ~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~~~- 357 (542)
+ ++.||.++++|.|+||++++++++++.+||||++||++++|+.++|++||+|++|+|+|||+.||++++|+..+
T Consensus 278 a~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~ 357 (476)
T PTZ00075 278 ARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPG 357 (476)
T ss_pred CEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCC
Confidence 9 46689999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cceecccCCeeEEEcCCCCEEEEeecCceecccCCC-CChhhhhhhhhhh--------cccC--CCcchhhHH---HHHH
Q psy4626 358 LTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ--------RDKS--SLIPCYHLR---FASN 423 (542)
Q Consensus 358 ~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~-~p~~~~~~~~~~~--------~~~~--~l~~~~~~~---~~~~ 423 (542)
.++.+++|++++|++||||+||||+|||||||+||+ ||+||||++|++| +++. +|+|+||.| +|++
T Consensus 358 vdv~evep~v~~~~~~~g~~i~llaeGrlvNl~~~~GhP~~vMd~sfa~Q~la~~~l~~~~~~~~~~~~v~~lp~~~d~~ 437 (476)
T PTZ00075 358 IEIVEIKPQVDRYTFPDGKGIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENRDTGKYPNGVYKLPKELDEK 437 (476)
T ss_pred ceeecccCCCCeEEeCCCCEEEEEeCCCccccCCCCCCCeeEeeHHHHHHHHHHHHHHhccCccccCCceEECCHHHHHH
Confidence 888999999999999999999999999999999998 9999999999994 5555 799999999 9999
Q ss_pred HHHHHhhccC
Q psy4626 424 LAKYLLNSLT 433 (542)
Q Consensus 424 va~~~l~~~~ 433 (542)
||++||++|-
T Consensus 438 vA~~~L~~~g 447 (476)
T PTZ00075 438 VARLHLKKLG 447 (476)
T ss_pred HHHHHHHHcC
Confidence 9999999984
No 14
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=100.00 E-value=8.8e-37 Score=285.38 Aligned_cols=160 Identities=53% Similarity=0.884 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626 55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134 (542)
Q Consensus 55 ~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD 134 (542)
|+|||+||++++++|+++..+.||+++|+|||+||+++|+.|+++|++|+|+|+||.++.+|.++||++.+++++++.+|
T Consensus 1 N~yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~ad 80 (162)
T PF00670_consen 1 NRYGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDAD 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-S
T ss_pred CccccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~ 214 (542)
+||++||++++++.++|++||+|++++|+||++.|||+++|....++..++++++++|.+|||+.|+||++||++||+|+
T Consensus 81 i~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v~~y~l~~G~~i~lLa~GrlvNL~~a 160 (162)
T PF00670_consen 81 IFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRPQVDRYTLPDGRRIILLAEGRLVNLAAA 160 (162)
T ss_dssp EEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTEEEEEETTSEEEEEEGGGSBHHHHHS
T ss_pred EEEECCCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCCCeeEEEeCCCCEEEEEECCCEEeecCc
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999986
No 15
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=100.00 E-value=6.6e-38 Score=311.64 Aligned_cols=95 Identities=51% Similarity=0.990 Sum_probs=82.9
Q ss_pred CCCCcEEeecCCCHHHHHHHHHHHhh---cCCCceeecCCCchhhhhhhhccccccccceeccchhhHHHHHHHHHHcCC
Q psy4626 436 YTGLPVFAWRGETEEDFWWCIDKCVN---SWQPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGK 512 (542)
Q Consensus 436 ~~g~~v~a~~g~~~~ey~~~~~~~~~---~~~p~~i~ddg~d~~~~~h~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~ 512 (542)
+.|||||||||||+|||||||+++|+ +++||+||||||||++++|++||+++++|+|+||||||||+||++|+++|.
T Consensus 90 ~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~~~~~l~~~i~G~sEETTTGv~rL~am~~~g~ 169 (268)
T PF05221_consen 90 EEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHTKRPELLSGIIGGSEETTTGVHRLRAMEKEGK 169 (268)
T ss_dssp HTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHHHHHHHHHT-SEEEE-SHHHHHHHHHHHHTT-
T ss_pred cCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHHHHHHHhhhhheEEecccccccchhhhhhhhhcc
Confidence 47999999999999999999999993 356999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecccccccccc
Q psy4626 513 LTVPAMNVNDSVTKTKFD 530 (542)
Q Consensus 513 l~~p~i~vnd~~~k~~fd 530 (542)
|+||+|+||||+||++||
T Consensus 170 L~~PviavNDa~tK~~FD 187 (268)
T PF05221_consen 170 LKFPVIAVNDAVTKHLFD 187 (268)
T ss_dssp --SEEEESTTSHHHHTTH
T ss_pred cCCCeeEecchhhHhhcC
Confidence 999999999999999999
No 16
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=100.00 E-value=9.2e-38 Score=291.97 Aligned_cols=125 Identities=44% Similarity=0.720 Sum_probs=112.3
Q ss_pred ccccccHHHHhhcCC----CCCCCCCCCccccCCeeeeehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCC
Q psy4626 269 HLTELSDEQAKYMGL----NKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 344 (542)
Q Consensus 269 ~i~~lt~~~a~~lg~----~e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~ 344 (542)
.+++=.+.+++++|+ +|+||+|++||+||||+|++++||++++|||||+||+++||+.+||++|||||||||+|||
T Consensus 33 ~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~ 112 (162)
T PF00670_consen 33 KVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATGNKDVITGEHFRQMKDGAILANAGHF 112 (162)
T ss_dssp HHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred cccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCCCccccCHHHHHHhcCCeEEeccCcC
Confidence 666667899999999 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCcceecccCCeeEEEcCCCCEEEEeecCceecccCCC
Q psy4626 345 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS 393 (542)
Q Consensus 345 ~~Ei~~~~l~~~~~~~~~~~~~v~~~~~~~g~~~~ll~~GrlvNl~~~~ 393 (542)
|+|||+++|++.+++++++||+|++|++||||+||||+|||||||+||.
T Consensus 113 d~Eid~~~L~~~~~~~~~v~~~v~~y~l~~G~~i~lLa~GrlvNL~~a~ 161 (162)
T PF00670_consen 113 DVEIDVDALEANAVEREEVRPQVDRYTLPDGRRIILLAEGRLVNLAAAT 161 (162)
T ss_dssp TTSBTHHHHHTCTSEEEEEETTEEEEEETTSEEEEEEGGGSBHHHHHS-
T ss_pred ceeEeeccccccCcEEEEcCCCeeEEEeCCCCEEEEEECCCEEeecCcC
Confidence 9999999999999999999999999999999999999999999999974
No 17
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=100.00 E-value=7.7e-37 Score=325.33 Aligned_cols=104 Identities=63% Similarity=1.194 Sum_probs=102.1
Q ss_pred CCCcEEeecCCCHHHHHHHHHHHhhcC---CCceeecCCCchhhhhhhhccccccccceeccchhhHHHHHHHHHHcCCc
Q psy4626 437 TGLPVFAWRGETEEDFWWCIDKCVNSW---QPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESLTGVHRLYQLSKAGKL 513 (542)
Q Consensus 437 ~g~~v~a~~g~~~~ey~~~~~~~~~~~---~p~~i~ddg~d~~~~~h~~~~~~~~~~~g~~eetttgv~~l~~~~~~g~l 513 (542)
.|||||||||||+||||||++++| +| +|++|+||||||+.++|++||+++++++|++|||||||+|||+|.++|.|
T Consensus 84 ~gi~v~a~~~~~~~~y~~~~~~~l-~~~~~~p~~i~DdGg~~~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~~~~~~l 162 (413)
T cd00401 84 AGIPVFAWKGETLEEYWWCIEQAL-KFPDGEPNMILDDGGDLTLLIHKKHPELLPGIRGISEETTTGVHRLYKMEKEGKL 162 (413)
T ss_pred cCceEEEEcCCCHHHHHHHHHHHH-hccCCCCcEEEecchHHHHHHHhhhhhhhhccEEEeecchHHHHHHHHHHHCCCC
Confidence 599999999999999999999999 58 89999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccccccccccccCCCCcccCC
Q psy4626 514 TVPAMNVNDSVTKTKFDNLYMCRESIID 541 (542)
Q Consensus 514 ~~p~i~vnd~~~k~~fdn~yg~~~s~~d 541 (542)
+||+|+||||.||++|||+||||||+||
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~ 190 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLID 190 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHH
Confidence 9999999999999999999999999987
No 18
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=99.97 E-value=6.8e-33 Score=275.84 Aligned_cols=227 Identities=31% Similarity=0.514 Sum_probs=150.5
Q ss_pred CccHHHHHHHhCCCCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEE
Q psy4626 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQV 80 (542)
Q Consensus 1 MP~l~~l~~~~~~~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktV 80 (542)
||+|++++++|..+|||+|.||++|+|+|+|||. ... .+ ...|..|
T Consensus 25 MPvL~~lr~~~~~~kPl~G~rIa~cLHle~kTA~-----------------------L~~-----tL------~a~GAeV 70 (268)
T PF05221_consen 25 MPVLMALRERFEAEKPLKGARIAGCLHLEAKTAV-----------------------LAE-----TL------KALGAEV 70 (268)
T ss_dssp -HHHHHHHHHHTTT-TTTTEEEEEES--SHHHHH-----------------------HHH-----HH------HHTTEEE
T ss_pred CHHHHHHHHHhhccCCCCCCEEEEEEechHHHHH-----------------------HHH-----HH------HHcCCeE
Confidence 9999999999999999999999999999999998 111 21 2359999
Q ss_pred EEEcCChhH--HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHh-----cCCcEEEEcCCCc-ccCC---HH
Q psy4626 81 VLCGYGEVG--KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-----RTVDIVVTATGNK-NVVT---RE 149 (542)
Q Consensus 81 vViG~G~IG--~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l-----~~aDvVi~atG~~-~lI~---~e 149 (542)
.+.|++|.. ..+|.+|+..|..|+++.-.. .. .+.-.++.++ .++|+|++..|.- .++. .+
T Consensus 71 ~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get--~e------ey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~~~~~ 142 (268)
T PF05221_consen 71 RWTGSNPLSTQDDVAAALAEEGIPVFAWKGET--DE------EYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHTKRPE 142 (268)
T ss_dssp EEEESSTTT--HHHHHHHHHTTEEEEE-TT----HH------HHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHHHHHH
T ss_pred EEecCCCcccchHHHHHhccCCceEEEeCCCC--HH------HHHHHHHHHhcCCCCCCcceeecchHHHHHHHHHHHHh
Confidence 999999987 789999999999999984111 00 0122334444 3689999987642 1121 35
Q ss_pred HHhccCCCeEEEeccCCCcccChHhhcC----CCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHH
Q psy4626 150 HMDKMKNGCVVCNMGHSNTEIDVNSLRT----PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITA 225 (542)
Q Consensus 150 ~l~~mk~GailvnvG~g~~eid~~aL~~----~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sf 225 (542)
.+..++.++....+| +.+|+. +.+.. ++..+++-...++- .||+||||+||
T Consensus 143 l~~~i~G~sEETTTG-------v~rL~am~~~g~L~~----------------PviavNDa~tK~~F--DHP~eVMd~SF 197 (268)
T PF05221_consen 143 LLSGIIGGSEETTTG-------VHRLRAMEKEGKLKF----------------PVIAVNDAVTKHLF--DHPSEVMDMSF 197 (268)
T ss_dssp HHHT-SEEEE-SHHH-------HHHHHHHHHTT---S----------------EEEESTTSHHHHTT--HS-HHHHHHHH
T ss_pred hhhheEEeccccccc-------chhhhhhhhhcccCC----------------CeeEecchhhHhhc--CCchhhhhhHh
Confidence 677888888888888 444441 11110 11112111111111 29999999999
Q ss_pred HHHHHHHHHHhcCC-CCCCCCccccCChhhHHHHHHhcCCccccccccccHHHHhhcCCCCCCCCCCCcc
Q psy4626 226 CTQALALIELFNAP-SGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294 (542)
Q Consensus 226 a~q~la~~~L~~~~-~~~~~~gv~~lp~~~d~~VA~l~L~~lg~~i~~lt~~~a~~lg~~e~~p~~a~ea 294 (542)
++|+|++++||+++ .++++++||.||+++|++||+++|++||++||+||++|++|||+|..+|||.-.+
T Consensus 198 a~QaLa~~~L~~~~~~~~~~~~V~~lP~~lDe~VA~~kL~~lGi~id~Lt~eQ~~YL~~~~~GP~k~~~y 267 (268)
T PF05221_consen 198 ANQALAQIYLWKNPNSGKLEPGVYPLPKELDEEVARLKLKSLGIKIDKLTEEQAEYLGSWQEGPFKPDHY 267 (268)
T ss_dssp HHHHHHHHHHHHTGTTGGSTSSEEE--HHHHHHHHHHHHGGGT-------HHHHHHHTS-TTS-SS-TT-
T ss_pred HHHHHHHHHHHhCcCccccCCCEEECCccchHHHHHHHHHHcCCccccCCHHHHHHcCCCCCCCCCcccc
Confidence 99999999999986 2579999999999999999999999999999999999999999999999997543
No 19
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.71 E-value=2.1e-16 Score=164.57 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=131.4
Q ss_pred ceecccHHhhhcccccceeecCchhhhHHHHhHHH---------------HHHHHHHHHHhhcCccccCcEEEEEcCChh
Q psy4626 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYM---------------CRESIIDSLKRSTDVMFGGKQVVLCGYGEV 88 (542)
Q Consensus 24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g---------------~~~s~~~ai~r~~~~~l~GktVvViG~G~I 88 (542)
|+.|++.+.+... ..+|+++..+.+....+...+ ..++.|+. ....+..+.||||+|+|+|.|
T Consensus 76 Gvd~id~~~~~~~-gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-~~~~g~el~gkTvGIiG~G~I 153 (324)
T COG0111 76 GVDNIDLEAATKR-GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR-KAFRGTELAGKTVGIIGLGRI 153 (324)
T ss_pred cccccCHHHHhhc-CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc-cccccccccCCEEEEECCCHH
Confidence 4556666555433 678888877643332222211 12223332 112345788999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEecc
Q psy4626 89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~GailvnvG 164 (542)
|+.+|++|++||++|++||+-..+.......++...++++++++||+|+.++ .|+++|+++.|++||+|+++||+|
T Consensus 154 G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a 233 (324)
T COG0111 154 GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA 233 (324)
T ss_pred HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence 9999999999999999999633333222233445677999999999999953 589999999999999999999999
Q ss_pred CCC---cccChHhhcCCC-----cceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHh
Q psy4626 165 HSN---TEIDVNSLRTPD-----LTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELF 236 (542)
Q Consensus 165 ~g~---~eid~~aL~~~~-----l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~ 236 (542)
||. .+..+++|..+. +++++.+|......+-+-..+.+. ||.+.+|..+ ....+.++..++..|
T Consensus 234 RG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~T-----PHia~~T~ea---~~~~~~~~~~~i~~~ 305 (324)
T COG0111 234 RGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILT-----PHIGGSTDEA---QERVAEIVAENIVRY 305 (324)
T ss_pred CcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEEC-----CcccccCHHH---HHHHHHHHHHHHHHH
Confidence 995 455567777654 345554443221111000112222 4555544221 234555666666666
Q ss_pred cCC
Q psy4626 237 NAP 239 (542)
Q Consensus 237 ~~~ 239 (542)
..+
T Consensus 306 l~g 308 (324)
T COG0111 306 LAG 308 (324)
T ss_pred HcC
Confidence 654
No 20
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=159.22 Aligned_cols=161 Identities=17% Similarity=0.304 Sum_probs=119.0
Q ss_pred CCceee-----ceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHH-----------HHH-------hhcCcc
Q psy4626 18 KNARIV-----GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID-----------SLK-------RSTDVM 74 (542)
Q Consensus 18 ~G~~i~-----~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~-----------ai~-------r~~~~~ 74 (542)
.+.+++ |+.|++++.|. ...+-|.++.+..+....|...+.--++.. +-+ ...+..
T Consensus 65 p~LKlIa~~~~G~D~vDl~aa~-~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~ 143 (324)
T COG1052 65 PGLKLIATRSAGYDNVDLEAAK-ERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFD 143 (324)
T ss_pred CCcEEEEEeccccCcccHHHHH-HCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccC
Confidence 455655 77799999886 566778888876554444333333222211 100 012346
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHH
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREH 150 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~ 150 (542)
+.|||++|+|+|.||+.+|+++++|||+|+++++.|. .......++...+++++++++|+|+.+. .|+|+|+++.
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~ 222 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEE 222 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHH
Confidence 8899999999999999999999999999999998876 3333445577777999999999999943 3889999999
Q ss_pred HhccCCCeEEEeccCCC---cccChHhhcCCCc
Q psy4626 151 MDKMKNGCVVCNMGHSN---TEIDVNSLRTPDL 180 (542)
Q Consensus 151 l~~mk~GailvnvG~g~---~eid~~aL~~~~l 180 (542)
|++||+|+++||+|||. ....+++|+++.+
T Consensus 223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i 255 (324)
T COG1052 223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKI 255 (324)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHhCCc
Confidence 99999999999999995 3445677776643
No 21
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.65 E-value=7.9e-16 Score=147.18 Aligned_cols=110 Identities=25% Similarity=0.382 Sum_probs=90.2
Q ss_pred hcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCccc
Q psy4626 70 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNV 145 (542)
Q Consensus 70 ~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~l 145 (542)
..+..+.|++|+|+|+|.||+.+|++|++||++|+++|+++.....+...++...+++++++.+|+|+.+. .|.++
T Consensus 29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~l 108 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGL 108 (178)
T ss_dssp TTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTS
T ss_pred CCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhcccccccee
Confidence 34567899999999999999999999999999999999887655445567788889999999999999953 47899
Q ss_pred CCHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
|+++.|++||+|+++||+|||+ .+..+++|+.+.
T Consensus 109 i~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 109 INAEFLAKMKPGAVLVNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp BSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTS
T ss_pred eeeeeeeccccceEEEeccchhhhhhhHHHHHHhhcc
Confidence 9999999999999999999995 344456776653
No 22
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.62 E-value=8.7e-15 Score=151.92 Aligned_cols=104 Identities=20% Similarity=0.358 Sum_probs=87.9
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR 148 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~ 148 (542)
..+.|+||+|+|+|.||+.+|+++++|||+|+++|+.+.. ...++...+++++++.||+|+.+. .|+++|++
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~----~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~ 216 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN----KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAY 216 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc----cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCH
Confidence 4689999999999999999999999999999999864321 234666779999999999999953 58899999
Q ss_pred HHHhccCCCeEEEeccCCC---cccChHhhcCCCc
Q psy4626 149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDL 180 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l 180 (542)
+.|++||+|+++||+|||. .+..+++|+.+.+
T Consensus 217 ~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i 251 (311)
T PRK08410 217 KELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI 251 (311)
T ss_pred HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 9999999999999999995 4555677776643
No 23
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.62 E-value=1.1e-14 Score=151.81 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=88.2
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHH-hCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccC
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVV 146 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI 146 (542)
+..+.|+|++|+|+|.||+.+|++|+ +|||+|+++|+.+.. ......|....++++++++||+|+.+. .|+++|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF 218 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence 34689999999999999999999998 999999999865322 112344666779999999999999953 578999
Q ss_pred CHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
+++.|++||+|+++||+|||. .+..+++|..+.
T Consensus 219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~ 254 (323)
T PRK15409 219 GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGE 254 (323)
T ss_pred CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence 999999999999999999995 455567777654
No 24
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.57 E-value=5.1e-14 Score=146.58 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=84.5
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR 148 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~ 148 (542)
..+.|++|+|+|+|.||+.+|++|++|||+|+++++.+. ...+..++++++++.||+|+.+. .|+++|++
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~------~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~ 217 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGR------PARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGA 217 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCC------cccccccCHHHHHHhCCEEEECCCCChHHhcCcCH
Confidence 368999999999999999999999999999999986421 11234568999999999999953 58899999
Q ss_pred HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
+.|++||+|+++||+|||. .+..+++|+.+.
T Consensus 218 ~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~ 251 (317)
T PRK06487 218 RELALMKPGALLINTARGGLVDEQALADALRSGH 251 (317)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence 9999999999999999995 344466777654
No 25
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.55 E-value=7.6e-14 Score=145.10 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=83.8
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR 148 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~ 148 (542)
..+.|+||+|+|+|.||+.+|+++++|||+|+++++.+.. .......+++++++.||+|+.+. .|+++|++
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-----~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~ 217 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-----VCREGYTPFEEVLKQADIVTLHCPLTETTQNLINA 217 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-----ccccccCCHHHHHHhCCEEEEcCCCChHHhcccCH
Confidence 3689999999999999999999999999999999854321 11122468999999999999954 48899999
Q ss_pred HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
+.|++||+|+++||+|||. .+..+++|..+.
T Consensus 218 ~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~ 251 (314)
T PRK06932 218 ETLALMKPTAFLINTGRGPLVDEQALLDALENGK 251 (314)
T ss_pred HHHHhCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence 9999999999999999995 344456777654
No 26
>PLN02928 oxidoreductase family protein
Probab=99.55 E-value=1.5e-13 Score=144.75 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=85.8
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh------------hcCCceeeCHHHHhcCCcEEEEcC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLNEVIRTVDIVVTAT 140 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A------------~~~G~~v~~l~e~l~~aDvVi~at 140 (542)
..+.|++++|+|+|.||+.+|+.|++||++|+++|++..+.... ...+....++++++++||+|+.+.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 46899999999999999999999999999999998763221111 011124568899999999999964
Q ss_pred ----CCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 141 ----GNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 141 ----G~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
.|+++|+++.|++||+|+++||+|||. .+..+++|..+.
T Consensus 235 Plt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~ 280 (347)
T PLN02928 235 TLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGH 280 (347)
T ss_pred CCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC
Confidence 588999999999999999999999995 444566777654
No 27
>PLN03139 formate dehydrogenase; Provisional
Probab=99.54 E-value=1.1e-13 Score=147.21 Aligned_cols=156 Identities=20% Similarity=0.263 Sum_probs=108.5
Q ss_pred ceecccHHhhhcccccceeecCchhhhHHHHhHHH---------------HHHHHHHHHH-hhcCccccCcEEEEEcCCh
Q psy4626 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYM---------------CRESIIDSLK-RSTDVMFGGKQVVLCGYGE 87 (542)
Q Consensus 24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g---------------~~~s~~~ai~-r~~~~~l~GktVvViG~G~ 87 (542)
|+.|++.+.+. .-.++|+++.++......+...+ ..+..|..-. ...+..+.|++|+|+|+|.
T Consensus 131 G~D~iDl~aa~-~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~ 209 (386)
T PLN03139 131 GSDHIDLPAAA-AAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGR 209 (386)
T ss_pred cccccCHHHHH-HCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecH
Confidence 56677776654 35677887766432222111111 1112232100 0123468999999999999
Q ss_pred hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEe
Q psy4626 88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 162 (542)
Q Consensus 88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvn 162 (542)
||+.+|++|++||++|+++|+++.........|+.. .+++++++.+|+|+.+. .+.++++++.|+.||+|+++||
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN 289 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVN 289 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEE
Confidence 999999999999999999997754333333456554 48999999999999964 4789999999999999999999
Q ss_pred ccCCC---cccChHhhcCCCc
Q psy4626 163 MGHSN---TEIDVNSLRTPDL 180 (542)
Q Consensus 163 vG~g~---~eid~~aL~~~~l 180 (542)
+|||. .+..+++|..+.+
T Consensus 290 ~aRG~iVDe~AL~~AL~sG~l 310 (386)
T PLN03139 290 NARGAIMDTQAVADACSSGHI 310 (386)
T ss_pred CCCCchhhHHHHHHHHHcCCc
Confidence 99995 3444567776543
No 28
>PRK07574 formate dehydrogenase; Provisional
Probab=99.53 E-value=1.5e-13 Score=146.24 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=87.4
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVT 147 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~at----G~~~lI~ 147 (542)
..+.|++|+|+|+|.||+.+|++|++||++|+++|+.+.........|.. ..+++++++.||+|+.+. .+.++++
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~ 267 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD 267 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC
Confidence 46899999999999999999999999999999999775332223344554 468999999999999965 3778999
Q ss_pred HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
++.|+.||+|+++||+|||. .+...++|..+.
T Consensus 268 ~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~ 302 (385)
T PRK07574 268 ADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGH 302 (385)
T ss_pred HHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCC
Confidence 99999999999999999995 344456777654
No 29
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.52 E-value=3.7e-13 Score=141.05 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=88.4
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR 148 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~ 148 (542)
..+.|++|+|+|+|.||+.+|++|+++|++|+++|+++... .+...|+...+++++++.||+|+.+. .+.+++++
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~ 224 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINE 224 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence 46899999999999999999999999999999999876433 23344666678999999999999965 36789999
Q ss_pred HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
+.|+.||+|++++|+|||. .+....+|..+.
T Consensus 225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~ 258 (333)
T PRK13243 225 ERLKLMKPTAILVNTARGKVVDTKALVKALKEGW 258 (333)
T ss_pred HHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCC
Confidence 9999999999999999995 344456777654
No 30
>PLN02306 hydroxypyruvate reductase
Probab=99.52 E-value=3e-13 Score=144.19 Aligned_cols=155 Identities=16% Similarity=0.270 Sum_probs=104.8
Q ss_pred ceecccHHhhhcccccceeecCchhhhHHHHhHHHHH---------------HHHHHHHHh--hcCccccCcEEEEEcCC
Q psy4626 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCR---------------ESIIDSLKR--STDVMFGGKQVVLCGYG 86 (542)
Q Consensus 24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~---------------~s~~~ai~r--~~~~~l~GktVvViG~G 86 (542)
|..|++.+.+. ...++|.++.+.......+...+.- +..|..... ..+..+.|++|+|+|+|
T Consensus 96 G~D~iD~~aa~-~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 174 (386)
T PLN02306 96 GYNNVDVEAAN-KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAG 174 (386)
T ss_pred ccccccHHHHH-HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCC
Confidence 55688887765 4577888887643222222111111 111111100 12346899999999999
Q ss_pred hhHHHHHHHHH-hCCCEEEEEeCCchhhhhh--hcCC------------ce-eeCHHHHhcCCcEEEEc----CCCcccC
Q psy4626 87 EVGKGCCQSLK-GLGCVIYITEIDPICALQA--CMDG------------FS-VVKLNEVIRTVDIVVTA----TGNKNVV 146 (542)
Q Consensus 87 ~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A--~~~G------------~~-v~~l~e~l~~aDvVi~a----tG~~~lI 146 (542)
.||+.+|++++ +|||+|+++|+.+...... ...| .. ..+++++++.||+|+.+ ..|+++|
T Consensus 175 ~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li 254 (386)
T PLN02306 175 RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI 254 (386)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence 99999999985 9999999999765321110 0111 12 34789999999999994 3588999
Q ss_pred CHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
+++.|++||+|+++||+|||. .+..+++|..+.
T Consensus 255 n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~ 290 (386)
T PLN02306 255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANP 290 (386)
T ss_pred CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence 999999999999999999995 344456776553
No 31
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.51 E-value=3.8e-13 Score=144.61 Aligned_cols=151 Identities=21% Similarity=0.321 Sum_probs=105.6
Q ss_pred ceecccHHhhhcccccceeecCchhhhHHHHhHHHH---------------HHHHHHHHHhhcCccccCcEEEEEcCChh
Q psy4626 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMC---------------RESIIDSLKRSTDVMFGGKQVVLCGYGEV 88 (542)
Q Consensus 24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~---------------~~s~~~ai~r~~~~~l~GktVvViG~G~I 88 (542)
|..|++.+.+. ...++|+++.+.......+...+. .+..|+.- ...+..+.||||+|+|+|.|
T Consensus 85 G~d~id~~~~~-~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~-~~~~~~L~gktvGIiG~G~I 162 (409)
T PRK11790 85 GTNQVDLDAAA-KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS-AAGSFEVRGKTLGIVGYGHI 162 (409)
T ss_pred ecccccHHHHH-hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc-ccCcccCCCCEEEEECCCHH
Confidence 55677776554 457788887764322221111111 11112210 01235789999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626 89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM 163 (542)
Q Consensus 89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv 163 (542)
|+.+|+++++||++|++||+.+.. ...++. +.+++++++.||+|+.+. .|+++++++.|++||+|++++|+
T Consensus 163 G~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~ 238 (409)
T PRK11790 163 GTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINA 238 (409)
T ss_pred HHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEEC
Confidence 999999999999999999965421 112333 458999999999999954 48899999999999999999999
Q ss_pred cCCC---cccChHhhcCCCc
Q psy4626 164 GHSN---TEIDVNSLRTPDL 180 (542)
Q Consensus 164 G~g~---~eid~~aL~~~~l 180 (542)
|||. .+..+++|.++.+
T Consensus 239 aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 239 SRGTVVDIDALADALKSGHL 258 (409)
T ss_pred CCCcccCHHHHHHHHHcCCc
Confidence 9995 3444567776643
No 32
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.51 E-value=2.5e-13 Score=150.40 Aligned_cols=153 Identities=19% Similarity=0.252 Sum_probs=107.6
Q ss_pred ceecccHHhhhcccccceeecCchhhhHHHHhHHHHH---------------HHHHHHHHhhcCccccCcEEEEEcCChh
Q psy4626 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCR---------------ESIIDSLKRSTDVMFGGKQVVLCGYGEV 88 (542)
Q Consensus 24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~---------------~s~~~ai~r~~~~~l~GktVvViG~G~I 88 (542)
|..|++.+.+. ...++|+++.+.......+...+.- +.-|.. ....+..+.||+|+|+|+|.|
T Consensus 72 G~d~id~~~~~-~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~-~~~~g~~l~gktvgIiG~G~I 149 (525)
T TIGR01327 72 GVDNIDIEAAT-ARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR-KAFMGTELYGKTLGVIGLGRI 149 (525)
T ss_pred ccchhcHHHHH-HCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc-cccCccccCCCEEEEECCCHH
Confidence 55577776654 4577888877643322222221111 111211 001235689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626 89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM 163 (542)
Q Consensus 89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv 163 (542)
|+.+|++|++||++|++||+.... ..+...|+... +++++++.+|+|+.+. .+.++++++.|+.||+|++++|+
T Consensus 150 G~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 228 (525)
T TIGR01327 150 GSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNC 228 (525)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEc
Confidence 999999999999999999864222 22445576654 7999999999999954 47899999999999999999999
Q ss_pred cCCC---cccChHhhcCCC
Q psy4626 164 GHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 164 G~g~---~eid~~aL~~~~ 179 (542)
|||. .+..+++|..+.
T Consensus 229 aRG~~vde~aL~~aL~~g~ 247 (525)
T TIGR01327 229 ARGGIIDEAALYEALEEGH 247 (525)
T ss_pred CCCceeCHHHHHHHHHcCC
Confidence 9995 344456777654
No 33
>KOG0068|consensus
Probab=99.49 E-value=4.5e-13 Score=137.08 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=114.0
Q ss_pred CCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHH--------------hhcCccccCcEEE
Q psy4626 16 PLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLK--------------RSTDVMFGGKQVV 81 (542)
Q Consensus 16 pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~--------------r~~~~~l~GktVv 81 (542)
-+-|+.-+|...++.+.|. .-.+-|+++..+-+....+.-.|.--|+..-+- ...+..+.|||++
T Consensus 72 kvVgrag~G~dNVDL~AAt-e~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLg 150 (406)
T KOG0068|consen 72 KVVGRAGIGVDNVDLKAAT-ENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLG 150 (406)
T ss_pred EEEEecccCccccChhhHH-hCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEE
Confidence 3456666677777776652 223346666555443333322222222211111 1135678999999
Q ss_pred EEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEc----CCCcccCCHHHHhccCCC
Q psy4626 82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNG 157 (542)
Q Consensus 82 ViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~a----tG~~~lI~~e~l~~mk~G 157 (542)
|+|+|.||+.+|.+++++|++|+.+|.-.. ..++...|.+.++++|++..||+|..+ ..|.++++.+.|.+||+|
T Consensus 151 vlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkG 229 (406)
T KOG0068|consen 151 VLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKG 229 (406)
T ss_pred EeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCC
Confidence 999999999999999999999999984332 234667899999999999999999984 358899999999999999
Q ss_pred eEEEeccCCC---cccChHhhcCC
Q psy4626 158 CVVCNMGHSN---TEIDVNSLRTP 178 (542)
Q Consensus 158 ailvnvG~g~---~eid~~aL~~~ 178 (542)
.++||++||. ....++++..+
T Consensus 230 VriIN~aRGGvVDe~ALv~Al~sG 253 (406)
T KOG0068|consen 230 VRIINVARGGVVDEPALVRALDSG 253 (406)
T ss_pred cEEEEecCCceechHHHHHHHhcC
Confidence 9999999995 34445566544
No 34
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.49 E-value=1.9e-13 Score=145.11 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=85.5
Q ss_pred hhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC-------
Q psy4626 69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG------- 141 (542)
Q Consensus 69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG------- 141 (542)
|..+..+.|+||+|+|+|.||+.+|++|+++|++|+++|+ .+... .......++++++++||+|+.++.
T Consensus 108 r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp--~~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~ 183 (378)
T PRK15438 108 ERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP--PRADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPY 183 (378)
T ss_pred ccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC--ccccc--ccccccCCHHHHHhhCCEEEEeCCCCCCccc
Confidence 3345678999999999999999999999999999999984 33221 122345689999999999998432
Q ss_pred -CcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626 142 -NKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP 178 (542)
Q Consensus 142 -~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~ 178 (542)
|.++++++.|+.||+|+++||+|||. .+..+++|+++
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 184 KTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred ccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence 78999999999999999999999995 34445666654
No 35
>KOG0069|consensus
Probab=99.49 E-value=4.8e-13 Score=138.90 Aligned_cols=165 Identities=24% Similarity=0.350 Sum_probs=121.6
Q ss_pred ceecccHHhhhcccccceeecCchhhhHHHH-----------hHHHHHHHHHHHHH-----hhcCccccCcEEEEEcCCh
Q psy4626 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFD-----------NLYMCRESIIDSLK-----RSTDVMFGGKQVVLCGYGE 87 (542)
Q Consensus 24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd-----------~~~g~~~s~~~ai~-----r~~~~~l~GktVvViG~G~ 87 (542)
|+.|++.+.++ .-.+.|.++.++.+....| +.++..+-+..+-+ ...+..+.||||+|+|+|.
T Consensus 94 G~D~vDl~a~~-krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~ 172 (336)
T KOG0069|consen 94 GYDHVDLEAAR-KRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGR 172 (336)
T ss_pred ccchhhHHHHH-hcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcH
Confidence 78899999886 5567788888765443322 22222221111100 1123467899999999999
Q ss_pred hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCHHHHhccCCCeEEEec
Q psy4626 88 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNM 163 (542)
Q Consensus 88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~e~l~~mk~Gailvnv 163 (542)
||+.+|++|++||+.+.++.+.+.+...+...+....++++.+..+|+|+.|. -|.+++|++.|+.||+|++++|+
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~ 252 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNT 252 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEec
Confidence 99999999999997777777777777666666667889999999999999954 37899999999999999999999
Q ss_pred cCCC---cccChHhhcCCC-----cceeeeccce
Q psy4626 164 GHSN---TEIDVNSLRTPD-----LTWEKVRSQV 189 (542)
Q Consensus 164 G~g~---~eid~~aL~~~~-----l~v~~~~~~v 189 (542)
|||. .+...++|..+. +++.+..|.+
T Consensus 253 aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~ 286 (336)
T KOG0069|consen 253 ARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPV 286 (336)
T ss_pred cccccccHHHHHHHHhcCCcccccccccCCCCCC
Confidence 9995 456677887653 5666665543
No 36
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.48 E-value=1.2e-13 Score=146.72 Aligned_cols=106 Identities=15% Similarity=0.265 Sum_probs=84.8
Q ss_pred hhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC--------
Q psy4626 69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT-------- 140 (542)
Q Consensus 69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at-------- 140 (542)
|..+..+.|+||+|+|+|.||+.+|++|+++|++|+++|+. +.. ...+....++++++++||+|+.++
T Consensus 108 r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~--~~~--~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~ 183 (381)
T PRK00257 108 EREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPP--RQE--AEGDGDFVSLERILEECDVISLHTPLTKEGEH 183 (381)
T ss_pred cccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCc--ccc--cccCccccCHHHHHhhCCEEEEeCcCCCCccc
Confidence 33456789999999999999999999999999999999853 221 122345678999999999999853
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP 178 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~ 178 (542)
.|.++++.+.|+.||+|+++||+|||. .+..+.+|..+
T Consensus 184 ~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g 224 (381)
T PRK00257 184 PTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224 (381)
T ss_pred cccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence 267999999999999999999999996 33344566554
No 37
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.48 E-value=4.8e-13 Score=148.11 Aligned_cols=107 Identities=21% Similarity=0.318 Sum_probs=88.7
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT 147 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~ 147 (542)
+..+.|++++|+|+|.||+.+|++|++||++|+++|+.+.. ..+...|+...+++++++.+|+|+.+. .+.++++
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~ 213 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIG 213 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcC
Confidence 35689999999999999999999999999999999975432 223456777779999999999999964 3779999
Q ss_pred HHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 148 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
++.|++||+|++++|+|||. .+..+++|..+.
T Consensus 214 ~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 248 (526)
T PRK13581 214 AEELAKMKPGVRIINCARGGIIDEAALAEALKSGK 248 (526)
T ss_pred HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCC
Confidence 99999999999999999995 344456777654
No 38
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.40 E-value=1.7e-12 Score=134.99 Aligned_cols=106 Identities=10% Similarity=0.119 Sum_probs=84.0
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC----CCcccCCH
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTR 148 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at----G~~~lI~~ 148 (542)
..+.|+||+|+|+|.||+.+|+.|++||++|+++++.+........ -....+++++++++|+|+.+. .+.++++.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~-~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~ 210 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS-FAGREELSAFLSQTRVLINLLPNTPETVGIINQ 210 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee-ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence 4678999999999999999999999999999999976533211111 112357889999999999964 37789999
Q ss_pred HHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 149 EHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
+.|++||+|+++||+|||. .+..+.+|..+.
T Consensus 211 ~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~ 244 (312)
T PRK15469 211 QLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGK 244 (312)
T ss_pred HHHhcCCCCcEEEECCCccccCHHHHHHHHhcCC
Confidence 9999999999999999995 344456777654
No 39
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.29 E-value=8e-12 Score=129.39 Aligned_cols=100 Identities=19% Similarity=0.386 Sum_probs=82.4
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcC----CCcccC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTAT----GNKNVV 146 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~at----G~~~lI 146 (542)
..+.|++|+|+|+|.||+.+|+.+++||++|+++|+++.. .|.. ..+++++++++|+|+.+. .+.+++
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li 191 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMI 191 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCc
Confidence 5789999999999999999999999999999999976432 2221 457899999999999954 478899
Q ss_pred CHHHHhccCCCeEEEeccCCC---cccChHhhcCC
Q psy4626 147 TREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTP 178 (542)
Q Consensus 147 ~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~ 178 (542)
+++.|+.||+|+++||+|||. .+....+|.++
T Consensus 192 ~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g 226 (303)
T PRK06436 192 NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 (303)
T ss_pred CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence 999999999999999999996 23334566654
No 40
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.29 E-value=2.9e-11 Score=126.68 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=103.8
Q ss_pred ceecccHHhhhcccccceeecCchhhhHHHHhHHHH-----------HHHHHHHH--H-h-hcCccccCcEEEEEcCChh
Q psy4626 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMC-----------RESIIDSL--K-R-STDVMFGGKQVVLCGYGEV 88 (542)
Q Consensus 24 ~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~-----------~~s~~~ai--~-r-~~~~~l~GktVvViG~G~I 88 (542)
|..|++.+.+. ...++|.++.+.......+...+. .+.+..+- + + ..+..+.|++|+|+|+|.|
T Consensus 79 G~d~id~~~~~-~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~I 157 (330)
T PRK12480 79 GFDMYDLDLAK-KHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRI 157 (330)
T ss_pred ccchhhHHHHH-HCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHH
Confidence 56677777664 457778887663322221111111 11111110 0 1 1234689999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC----CcccCCHHHHhccCCCeEEEecc
Q psy4626 89 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG----NKNVVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 89 G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG----~~~lI~~e~l~~mk~GailvnvG 164 (542)
|+.+|+.|+++|++|+++|+++....... ....+++++++++|+|+.+.. +.++++++.|+.||+|+++||+|
T Consensus 158 G~~vA~~L~~~G~~V~~~d~~~~~~~~~~---~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 158 GAATAKIYAGFGATITAYDAYPNKDLDFL---TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred HHHHHHHHHhCCCEEEEEeCChhHhhhhh---hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 99999999999999999998875432111 123478899999999999653 45788889999999999999999
Q ss_pred CCC---cccChHhhcCCC
Q psy4626 165 HSN---TEIDVNSLRTPD 179 (542)
Q Consensus 165 ~g~---~eid~~aL~~~~ 179 (542)
||. .+..+.+|..+.
T Consensus 235 RG~~vd~~aL~~aL~~g~ 252 (330)
T PRK12480 235 RGAVINTPDLIAAVNDGT 252 (330)
T ss_pred CccccCHHHHHHHHHcCC
Confidence 995 344456777654
No 41
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.25 E-value=5.2e-11 Score=122.51 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=115.8
Q ss_pred CCCCCCceeeceecccHHhhhcccccceeecCchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHH
Q psy4626 14 DKPLKNARIVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCC 93 (542)
Q Consensus 14 ~~pl~G~~i~~~lh~~~~tA~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA 93 (542)
.-|....-.+|+.+.+.+.+.....++|+..-+.- .....|...+.+..+....+..+..+.|++++|+|+|.||+.+|
T Consensus 89 ~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~-~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA 167 (287)
T TIGR02853 89 STKGHCTIYVGISNPYLEQLAADAGVKLIELFERD-DVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIA 167 (287)
T ss_pred hcCCCCEEEEecCCHHHHHHHHHCCCeEEEEEecc-ceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHH
Confidence 33455666778888888755545667777322210 00001222344444433333345678999999999999999999
Q ss_pred HHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCccc
Q psy4626 94 QSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI 170 (542)
Q Consensus 94 ~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~ei 170 (542)
+.|+++|++|+++++++.+...+...|+...+ +.+.++++|+||.|+.. .+++++.++.|+++++++|++..+...
T Consensus 168 ~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-~ii~~~~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 168 RTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-LVLTADVLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-HHhCHHHHhcCCCCeEEEEeCcCCCCC
Confidence 99999999999999998776666566766543 45678899999998754 467888999999999999999988777
Q ss_pred ChHhhcC
Q psy4626 171 DVNSLRT 177 (542)
Q Consensus 171 d~~aL~~ 177 (542)
|+...++
T Consensus 247 df~~Ak~ 253 (287)
T TIGR02853 247 DFEYAKK 253 (287)
T ss_pred CHHHHHH
Confidence 7766654
No 42
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.19 E-value=1.7e-10 Score=120.90 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=83.1
Q ss_pred CccccCcEEEEEcCChhHHHHHHHH-HhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCC----Cccc
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSL-KGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATG----NKNV 145 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l-~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG----~~~l 145 (542)
+..+.|++|+|+|+|.||+.+|+.| +++|++|+++|+++..... .++. ..+++++++++|+|+.++. +.++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~l 217 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---TYVDYKDTIEEAVEGADIVTLHMPATKYNHYL 217 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---hhccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence 3468999999999999999999999 7899999999987654321 1233 3478999999999999643 6778
Q ss_pred CCHHHHhccCCCeEEEeccCCC---cccChHhhcCCC
Q psy4626 146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPD 179 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~ 179 (542)
++.+.++.||+|++++|++||. .+....+|..+.
T Consensus 218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~ 254 (332)
T PRK08605 218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGL 254 (332)
T ss_pred cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence 8888899999999999999995 233345666553
No 43
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.18 E-value=2.3e-10 Score=119.50 Aligned_cols=189 Identities=17% Similarity=0.257 Sum_probs=125.8
Q ss_pred HHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626 127 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG 206 (542)
Q Consensus 127 ~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G 206 (542)
.+.++++|+++. ..+ -++++.++.+++-..+...|.|-+.+|+++...+++-+..... +
T Consensus 40 ~~~~~~~d~~~~-~~~--~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~---------~--------- 98 (324)
T COG0111 40 LEALADADALIV-SVT--PVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPG---------G--------- 98 (324)
T ss_pred HhhcccCcEEEE-ecC--CCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCC---------c---------
Confidence 456789998887 333 4677899999999999999999888998877754433332210 0
Q ss_pred CcccccCCCChh--HHHh--hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHH
Q psy4626 207 RLVNLSCSSLPS--FVVS--ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQA 278 (542)
Q Consensus 207 rLvnl~~~thp~--~vmd--~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a 278 (542)
| +.++ .++. ++++.++.....-.+ . ++|... ..+. .++..+++|+ .|++..++++
T Consensus 99 ---n----a~~vAE~~~~~~L~~~R~~~~~~~~~~-~-g~W~~~--~~~g------~el~gkTvGIiG~G~IG~~va~~l 161 (324)
T COG0111 99 ---N----AISVAELVLALLLALARRIPDADASQR-R-GEWDRK--AFRG------TELAGKTVGIIGLGRIGRAVAKRL 161 (324)
T ss_pred ---c----hHHHHHHHHHHHHHHhcCchhhHHHHH-c-CCcccc--cccc------ccccCCEEEEECCCHHHHHHHHHH
Confidence 0 0011 1111 111111111111111 1 466651 0000 1556788888 9999999999
Q ss_pred hhcCCCC--CCCCCC--CccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626 279 KYMGLNK--AGPFKP--SYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350 (542)
Q Consensus 279 ~~lg~~e--~~p~~a--~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~ 350 (542)
+++|+.. .||+.. .+....++.+.++++.+++||||++ +.-|+++|+.+.|++||+||||+|++|+.+ ||-
T Consensus 162 ~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~v-Vde 240 (324)
T COG0111 162 KAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGV-VDE 240 (324)
T ss_pred HhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcce-ecH
Confidence 9999953 357433 3444556667779999999999999 888999999999999999999999999987 343
Q ss_pred cccc
Q psy4626 351 NSLR 354 (542)
Q Consensus 351 ~~l~ 354 (542)
++|-
T Consensus 241 ~aL~ 244 (324)
T COG0111 241 DALL 244 (324)
T ss_pred HHHH
Confidence 3343
No 44
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.17 E-value=4.1e-10 Score=117.14 Aligned_cols=197 Identities=14% Similarity=0.298 Sum_probs=129.8
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++.. . .-++++.++.+++-..+...|.|-+.+|++++.++++.+..+..... . -+
T Consensus 38 ~~~~~~d~ii~~--~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~-------~---~V---- 100 (311)
T PRK08410 38 ERIKDANIIITN--K-VVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYST-------E---SV---- 100 (311)
T ss_pred HHhCCCCEEEEC--C-CCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCC-------h---HH----
Confidence 446789988753 2 24677889999888888899999888999988866555543321000 0 00
Q ss_pred cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626 208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL 283 (542)
Q Consensus 208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~ 283 (542)
..-...|-++++.++.......++ ++|...-.. .......-++..+++|+ +|++..+++++++|+
T Consensus 101 -------AE~a~~l~L~~~R~~~~~~~~~~~--g~w~~~~~~--~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm 169 (311)
T PRK08410 101 -------AQHTFAMLLSLLGRINYYDRYVKS--GEYSESPIF--THISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGA 169 (311)
T ss_pred -------HHHHHHHHHHHHhCHHHHHHHHHc--CCCCcCCCc--cccCccccccCCCEEEEECCCHHHHHHHHHHhhcCC
Confidence 000111123333333333333333 466532110 00000112567788888 999999999999999
Q ss_pred CCC--CCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 284 NKA--GPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 284 ~e~--~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
... ||....+ ..||+..+++|++++||+|+. +..|+++|+.+.|++||+||+|+|+||+.+ ||-++|-+
T Consensus 170 ~V~~~d~~~~~~--~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v-VDe~AL~~ 244 (311)
T PRK08410 170 KVVYYSTSGKNK--NEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI-VNEKDLAK 244 (311)
T ss_pred EEEEECCCcccc--ccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc-cCHHHHHH
Confidence 533 5653322 357888899999999999999 778999999999999999999999999987 36555543
No 45
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=121.95 Aligned_cols=224 Identities=16% Similarity=0.168 Sum_probs=144.1
Q ss_pred EEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEE
Q psy4626 82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVC 161 (542)
Q Consensus 82 ViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~Gailv 161 (542)
|+-..++-..+.+.+... .++..++.+.. ... .+.+.++++|.++... ..-++++.++.+++-..++
T Consensus 5 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~---------~~~-~~~~~~~~~~~i~~~~--~~~i~~~~l~~~p~LKlIa 71 (324)
T COG1052 5 VLSTRKLPPEVLERLKEK-FEVERYEDDLT---------PDT-ELAERLKDADAVITFV--NDRIDAEVLEKLPGLKLIA 71 (324)
T ss_pred EEecCcCCHHHHHHhhcc-EEEEEeccCCc---------cch-HHHHHhcCCcEEEEcC--CCCcCHHHHHhCCCcEEEE
Confidence 444555555555555544 44555442210 001 3345678999998875 2357788999997777888
Q ss_pred eccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHH------HHHHHHHH
Q psy4626 162 NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACT------QALALIEL 235 (542)
Q Consensus 162 nvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~------q~la~~~L 235 (542)
+.|.|-+.+|+++...+++.+..+.... |.-+-+..+++ .+....+.
T Consensus 72 ~~~~G~D~vDl~aa~~~gI~Vtnvp~~~---------------------------t~sVAe~~~aLiLa~~R~~~~~~~~ 124 (324)
T COG1052 72 TRSAGYDNVDLEAAKERGITVTNVPGYS---------------------------TEAVAEHAVALILALARRIHEGDRR 124 (324)
T ss_pred EeccccCcccHHHHHHCCcEEEeCCCCC---------------------------chHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999999999998777666543110 11111222222 22222222
Q ss_pred hcCCCCCCCCcc--ccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCCCC--CCCC--CCccccCCeeeeehh
Q psy4626 236 FNAPSGRYKSDV--YLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLNKA--GPFK--PSYYSMDGFSVVKLN 305 (542)
Q Consensus 236 ~~~~~~~~~~gv--~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e~--~p~~--a~ea~mdG~~v~~~~ 305 (542)
.+. ++|...- ..++.. .++.+++|+ +|++..+++++++||... ||.+ ..|+ --+++-.+++
T Consensus 125 ~r~--g~w~~~~~~~~~~~~------~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~-~~~~~y~~l~ 195 (324)
T COG1052 125 VRE--GNWSLSGGPDPLLGF------DLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEK-ELGARYVDLD 195 (324)
T ss_pred Hhc--CcccccCCccccccc------CCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHh-hcCceeccHH
Confidence 222 4554421 111111 467788888 999999999999999533 3333 2334 2335555699
Q ss_pred hhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 306 EVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 306 ~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
|++++|||++. +-.|+++|+.+.|++||+|++|+|+||+.+ ||-++|-+
T Consensus 196 ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~-VDe~ALi~ 248 (324)
T COG1052 196 ELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL-VDEQALID 248 (324)
T ss_pred HHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc-cCHHHHHH
Confidence 99999999999 677999999999999999999999999987 45444443
No 46
>KOG0024|consensus
Probab=99.06 E-value=2.8e-10 Score=116.67 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=111.8
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeC-------HHH---Hh-
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK-------LNE---VI- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~-------l~e---~l- 130 (542)
.|||.+|+. .-.|.+|+|+|+||||......++++|| +|+++|.++.|+..|++.|++++. +++ .+
T Consensus 158 ~~HAcr~~~--vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 158 GVHACRRAG--VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVE 235 (354)
T ss_pred hhhhhhhcC--cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHH
Confidence 488888773 4679999999999999999999999999 999999999999999999998643 222 11
Q ss_pred -----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChH--hhcCCCcceeeeccceeeEecCC-CCEEEE
Q psy4626 131 -----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN--SLRTPDLTWEKVRSQVDHVIWPD-GKRIVL 202 (542)
Q Consensus 131 -----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~--aL~~~~l~v~~~~~~v~~y~~~d-g~~I~L 202 (542)
..+|+.|+|+|....++ ..+..+|.|+.++.+|-+...+.++ ....++++.+++. +|...+ +.+|.+
T Consensus 236 ~~~g~~~~d~~~dCsG~~~~~~-aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~f----ry~~~~y~~ai~l 310 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAEVTIR-AAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSF----RYCNGDYPTAIEL 310 (354)
T ss_pred hhccccCCCeEEEccCchHHHH-HHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeee----eeccccHHHHHHH
Confidence 35999999999887786 6788999999999999886554444 3345566666554 343211 467889
Q ss_pred ecCCCcccccCCC
Q psy4626 203 LAEGRLVNLSCSS 215 (542)
Q Consensus 203 La~GrLvnl~~~t 215 (542)
+++|++.--...|
T Consensus 311 i~sGki~~k~lIT 323 (354)
T KOG0024|consen 311 VSSGKIDVKPLIT 323 (354)
T ss_pred HHcCCcCchhhee
Confidence 9999886544444
No 47
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.01 E-value=5.6e-09 Score=107.96 Aligned_cols=100 Identities=21% Similarity=0.360 Sum_probs=84.2
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCCH
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVTR 148 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~~ 148 (542)
+..+.|++|+|+|+|.+|+.+++.|+.+|++|+++++++.+..++...|+.... +.+.+.++|+||+|+.. .++++
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-~~i~~ 225 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-LVLTK 225 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-hhhhH
Confidence 356789999999999999999999999999999999998877777777877654 45667899999999754 46778
Q ss_pred HHHhccCCCeEEEeccCCCcccCh
Q psy4626 149 EHMDKMKNGCVVCNMGHSNTEIDV 172 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~~eid~ 172 (542)
+.++.|++++++++++..+...++
T Consensus 226 ~~l~~~~~g~vIIDla~~pggtd~ 249 (296)
T PRK08306 226 EVLSKMPPEALIIDLASKPGGTDF 249 (296)
T ss_pred HHHHcCCCCcEEEEEccCCCCcCe
Confidence 899999999999999976544443
No 48
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.01 E-value=5.5e-10 Score=117.82 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=104.0
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhc-CCceee-CH-H--------HHh--cCCcEEEEcC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFSVV-KL-N--------EVI--RTVDIVVTAT 140 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~-~G~~v~-~l-~--------e~l--~~aDvVi~at 140 (542)
..+.+|+|+|+||||+..++.++.+|+ +|+++|+++.|+..|+. .|.+.+ +. + +.. .++|++|+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 345599999999999999999999998 89999999999998877 666643 22 1 111 3699999999
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCCCc---ccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS 215 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g~~---eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~t 215 (542)
|+...+. +.++.+++|+.++.+|.+.. .++...+..+++++.++......+.+ .+.+.++++|++..-...+
T Consensus 247 G~~~~~~-~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~--~~~~~ll~~g~i~~~~lit 321 (350)
T COG1063 247 GSPPALD-QALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDF--ERALDLLASGKIDPEKLIT 321 (350)
T ss_pred CCHHHHH-HHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccH--HHHHHHHHcCCCChhHceE
Confidence 9887774 79999999999999998843 45666777778888776321221111 3467889999887754443
No 49
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.98 E-value=3.9e-09 Score=110.43 Aligned_cols=195 Identities=13% Similarity=0.169 Sum_probs=127.6
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.+.++|+++.-. . -++++.++.+++-..+...|.|-+.+|++++.++++.+........ .-++
T Consensus 41 ~~~~~ad~li~~~-~--~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~----------~~VA--- 104 (323)
T PRK15409 41 AAFAEAEGLLGSG-E--KVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLT----------ETVA--- 104 (323)
T ss_pred HHhcCCeEEEEcC-C--CCCHHHHhhCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCc----------hHHH---
Confidence 4568899988532 2 4778889999888888899998888999988766655543321000 0000
Q ss_pred cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccc-cCChhhHHHHHHhcCCcccc----ccccccHHHHh-hc
Q psy4626 208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVY-LLPKKMDEYVASLHLPTFDA----HLTELSDEQAK-YM 281 (542)
Q Consensus 208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~-~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~-~l 281 (542)
.-...+-++.+.++.......++ ++|..... .... -++..+++|+ +|++..+++++ ++
T Consensus 105 --------E~~~~l~L~~~R~i~~~~~~~~~--g~w~~~~~~~~~g------~~L~gktvGIiG~G~IG~~va~~l~~~f 168 (323)
T PRK15409 105 --------DTLMALVLSTARRVVEVAERVKA--GEWTASIGPDWFG------TDVHHKTLGIVGMGRIGMALAQRAHFGF 168 (323)
T ss_pred --------HHHHHHHHHHHcCHHHHHHHHHc--CCCcccCcccccc------CCCCCCEEEEEcccHHHHHHHHHHHhcC
Confidence 00011112333333333333333 46753210 0000 1467788888 99999999998 99
Q ss_pred CCCCC--CCCCCCcc-ccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccccccc
Q psy4626 282 GLNKA--GPFKPSYY-SMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354 (542)
Q Consensus 282 g~~e~--~p~~a~ea-~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~ 354 (542)
|+... ||...-++ .-.|.+..+++|++++||+|+. +..|+++|+.+.|++||+||+|+|+||+.+ ||-++|-
T Consensus 169 gm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~v-Vde~AL~ 247 (323)
T PRK15409 169 NMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPV-VDENALI 247 (323)
T ss_pred CCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccc-cCHHHHH
Confidence 99533 45432221 1235566799999999999999 788999999999999999999999999987 3655554
Q ss_pred C
Q psy4626 355 T 355 (542)
Q Consensus 355 ~ 355 (542)
+
T Consensus 248 ~ 248 (323)
T PRK15409 248 A 248 (323)
T ss_pred H
Confidence 3
No 50
>KOG0068|consensus
Probab=98.92 E-value=4e-09 Score=108.53 Aligned_cols=225 Identities=18% Similarity=0.278 Sum_probs=142.8
Q ss_pred CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEE-ec
Q psy4626 85 YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVC-NM 163 (542)
Q Consensus 85 ~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~Gailv-nv 163 (542)
+=++++.+...++..|-+|......+.. ++-+.++.+|.++.-+++ -++++.|+.-+.+-.++ -.
T Consensus 12 ~e~~~~~~~~~l~~~g~~v~~~~~~~~e------------el~~~i~~~~aviVrs~t--kvtadvl~aa~~~lkvVgra 77 (406)
T KOG0068|consen 12 AESLDQACIEILKDNGYQVEFKKNLSLE------------ELIEKIKDCDALIVRSKT--KVTADVLEAAAGGLKVVGRA 77 (406)
T ss_pred ecccchHHHHHHHhcCceEEEeccCCHH------------HHHHHhccCCEEEEEeCC--eecHHHHHhhcCCeEEEEec
Confidence 4456666777777777766665321110 112335889999988777 47788888755554444 34
Q ss_pred cCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCC
Q psy4626 164 GHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRY 243 (542)
Q Consensus 164 G~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~ 243 (542)
|.|-+.+|+++...+++.+..+. ....+ +.+.+ ...+=+|++.|+-..-.-.+. ++|
T Consensus 78 g~G~dNVDL~AAte~gi~Vvn~P---------~~Ns~-----------saAEl-tigli~SLaR~i~~A~~s~k~--g~w 134 (406)
T KOG0068|consen 78 GIGVDNVDLKAATENGILVVNTP---------TANSR-----------SAAEL-TIGLILSLARQIGQASASMKE--GKW 134 (406)
T ss_pred ccCccccChhhHHhCCeEEEeCC---------CCChH-----------HHHHH-HHHHHHHHhhhcchhheeeec--Cce
Confidence 44457888887776555444321 10000 00000 001112333333221111111 567
Q ss_pred CCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCCCC--CCCCCC-ccccCCeeeeehhhhcccCcEEEE
Q psy4626 244 KSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLNKA--GPFKPS-YYSMDGFSVVKLNEVIRTVDIVVT 316 (542)
Q Consensus 244 ~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e~--~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t 316 (542)
...-+. .. ++..+++|+ +|+...+.+++.+|+.++ ||+... ++..-|.+.++++|+++.||++..
T Consensus 135 nr~~~~--G~------el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitl 206 (406)
T KOG0068|consen 135 NRVKYL--GW------ELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITL 206 (406)
T ss_pred eeccee--ee------EEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEE
Confidence 664332 11 456788887 999999999999999765 344332 233378899999999999999998
Q ss_pred ----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 317 ----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 317 ----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
+.-++++|+.+.|++||+|+.++|+.|+.+ ||.++|-+
T Consensus 207 H~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGv-VDe~ALv~ 248 (406)
T KOG0068|consen 207 HVPLTPSTEKLLNDETFAKMKKGVRIINVARGGV-VDEPALVR 248 (406)
T ss_pred ccCCCcchhhccCHHHHHHhhCCcEEEEecCCce-echHHHHH
Confidence 788999999999999999999999999987 67666654
No 51
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.92 E-value=4.4e-09 Score=109.74 Aligned_cols=193 Identities=13% Similarity=0.169 Sum_probs=122.8
Q ss_pred HHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626 127 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG 206 (542)
Q Consensus 127 ~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G 206 (542)
.+.++++|+++... . -++++.++.+++-..+...|.|-+.+|++++.++++.+......
T Consensus 40 ~~~~~~~d~~i~~~-~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~------------------ 98 (317)
T PRK06487 40 AERLRGAQVAISNK-V--ALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGY------------------ 98 (317)
T ss_pred HHHhCCCeEEEEeC-C--CCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCC------------------
Confidence 34568899887532 2 36778899998888888999888889998887655544432110
Q ss_pred CcccccCCCChhH--HHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhh
Q psy4626 207 RLVNLSCSSLPSF--VVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKY 280 (542)
Q Consensus 207 rLvnl~~~thp~~--vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~ 280 (542)
| +. ..... .+-++++.++.......++ ++|......-+. .....++..+++|+ +|++..++++++
T Consensus 99 ---~-~~-~vAE~~~~~~L~~~R~~~~~~~~~~~--g~W~~~~~~~~~--~~~~~~l~gktvgIiG~G~IG~~vA~~l~~ 169 (317)
T PRK06487 99 ---G-TP-SVAQHTLALLLALATRLPDYQQAVAA--GRWQQSSQFCLL--DFPIVELEGKTLGLLGHGELGGAVARLAEA 169 (317)
T ss_pred ---C-cc-hHHHHHHHHHHHHHcCHHHHHHHHHc--CCCccCcccccc--cCcccccCCCEEEEECCCHHHHHHHHHHhh
Confidence 0 00 00001 1112233332222222232 466532111000 00011466678887 999999999999
Q ss_pred cCCCCC--CCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccccccc
Q psy4626 281 MGLNKA--GPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354 (542)
Q Consensus 281 lg~~e~--~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~ 354 (542)
+|+... ||...- ++++.++++|++++||+|+. +..|+++|+.+.|++||+||+|+|+||+.+= |-++|-
T Consensus 170 fgm~V~~~~~~~~~----~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vV-de~AL~ 244 (317)
T PRK06487 170 FGMRVLIGQLPGRP----ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLV-DEQALA 244 (317)
T ss_pred CCCEEEEECCCCCc----ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcccc-CHHHHH
Confidence 999543 443211 22334589999999999998 7889999999999999999999999999873 544443
No 52
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.91 E-value=5.6e-09 Score=108.81 Aligned_cols=194 Identities=17% Similarity=0.237 Sum_probs=122.4
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++.. .. -++++.++.+++-..+...|.|-+.+|++++.++++.+..+...
T Consensus 40 ~~~~~~d~ii~~-~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~------------------- 97 (314)
T PRK06932 40 ERAKDADIVITS-KV--LFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY------------------- 97 (314)
T ss_pred HHhCCCcEEEEe-CC--CCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC-------------------
Confidence 346889988753 12 36778899998888888999888889998887655544432110
Q ss_pred cccccCCCChhHHHh--hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhc
Q psy4626 208 LVNLSCSSLPSFVVS--ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYM 281 (542)
Q Consensus 208 Lvnl~~~thp~~vmd--~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~l 281 (542)
| .......++. ++++.++-......++ ++|...-...+. .....++..+++|+ +|++..+++++++
T Consensus 98 --~--~~~vAE~~i~l~l~~~R~~~~~~~~~~~--~~W~~~~~~~~~--~~~~~~l~gktvgIiG~G~IG~~va~~l~~f 169 (314)
T PRK06932 98 --S--STTVPEHVLGMIFALKHSLMGWYRDQLS--DRWATCKQFCYF--DYPITDVRGSTLGVFGKGCLGTEVGRLAQAL 169 (314)
T ss_pred --C--hhHHHHHHHHHHHHHHhChHHHHHHHHc--CCCCcCcccccc--CCcccccCCCEEEEECCCHHHHHHHHHHhcC
Confidence 0 0000111111 2222222221222222 466542111000 00112567778887 9999999999999
Q ss_pred CCCCC--CCCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 282 GLNKA--GPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 282 g~~e~--~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
|+... +|....+ ...+| .+++|++++||||+. +..|+++|+.+.|++||+||+|+|+||+.+= |-++|-+
T Consensus 170 g~~V~~~~~~~~~~-~~~~~--~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~V-de~AL~~ 245 (314)
T PRK06932 170 GMKVLYAEHKGASV-CREGY--TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLV-DEQALLD 245 (314)
T ss_pred CCEEEEECCCcccc-ccccc--CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCcccc-CHHHHHH
Confidence 99533 3432211 12344 389999999999998 7789999999999999999999999999873 6555543
No 53
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.91 E-value=3.7e-09 Score=109.65 Aligned_cols=94 Identities=24% Similarity=0.352 Sum_probs=78.6
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcC---CCcccCCHHH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH 150 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~at---G~~~lI~~e~ 150 (542)
.+.|++|+|||+|.||+.+|+.|+++|++|+++++.+.....+...|+.+.+++++++.||+|+.+. .++++++.+.
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~ei 92 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEV 92 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHH
Confidence 5789999999999999999999999999999998543333446667888889999999999999965 3567887778
Q ss_pred HhccCCCeEEEeccCCC
Q psy4626 151 MDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 151 l~~mk~GailvnvG~g~ 167 (542)
++.||+|++++..-.++
T Consensus 93 l~~MK~GaiL~f~hgfn 109 (335)
T PRK13403 93 EENLREGQMLLFSHGFN 109 (335)
T ss_pred HhcCCCCCEEEECCCcc
Confidence 99999999888755444
No 54
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.88 E-value=1.3e-08 Score=109.69 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=122.9
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++....+ .++++.++.+++-..+...|.|-+.+|++++.++++.+......
T Consensus 49 ~~~~~~d~l~~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~------------------- 107 (409)
T PRK11790 49 EAIKDAHFIGIRSRT--QLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFS------------------- 107 (409)
T ss_pred HHcCCCCEEEEeCCC--CCCHHHHhhCCCCeEEEECceecccccHHHHHhCCCEEEeCCCC-------------------
Confidence 456789987654322 46778899998888888999888889999888665555433110
Q ss_pred cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626 208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ 277 (542)
Q Consensus 208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~ 277 (542)
++..+-. ++++.++.......++ ++|..... +. -++..+++|+ +|++..+++
T Consensus 108 --------~~~aVAE~~i~l~L~~~R~~~~~~~~~~~--g~w~~~~~--~~------~~L~gktvGIiG~G~IG~~vA~~ 169 (409)
T PRK11790 108 --------NTRSVAELVIGEIILLLRGIPEKNAKAHR--GGWNKSAA--GS------FEVRGKTLGIVGYGHIGTQLSVL 169 (409)
T ss_pred --------ChHHHHHHHHHHHHHHHcChHHHHHHHHc--Cccccccc--Cc------ccCCCCEEEEECCCHHHHHHHHH
Confidence 0111111 2222222222222222 46654321 00 1466788888 999999999
Q ss_pred HhhcCCCC--CCCCCCCccccCCe-eeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626 278 AKYMGLNK--AGPFKPSYYSMDGF-SVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350 (542)
Q Consensus 278 a~~lg~~e--~~p~~a~ea~mdG~-~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~ 350 (542)
++++|+.. .||..... ..++ .+.+++|++++||+|+. +..|+++|+.+.|++||+||+|+|+||+.+- |-
T Consensus 170 ~~~fGm~V~~~d~~~~~~--~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v-de 246 (409)
T PRK11790 170 AESLGMRVYFYDIEDKLP--LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV-DI 246 (409)
T ss_pred HHHCCCEEEEECCCcccc--cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc-CH
Confidence 99999953 34543221 2233 34589999999999999 6679999999999999999999999999874 55
Q ss_pred cccc
Q psy4626 351 NSLR 354 (542)
Q Consensus 351 ~~l~ 354 (542)
++|-
T Consensus 247 ~aL~ 250 (409)
T PRK11790 247 DALA 250 (409)
T ss_pred HHHH
Confidence 5454
No 55
>PLN03139 formate dehydrogenase; Provisional
Probab=98.85 E-value=1.1e-08 Score=109.20 Aligned_cols=224 Identities=19% Similarity=0.215 Sum_probs=139.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcc
Q psy4626 90 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 169 (542)
Q Consensus 90 ~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~e 169 (542)
.++-..+...|.++++++..+ + ....+.+.++++|++|.....+.-++++.++.+++-..+...|.|-+.
T Consensus 65 ~~~~~~l~~~g~~~v~~~~~~---------~-~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~ 134 (386)
T PLN03139 65 LGIRDWLESQGHQYIVTDDKE---------G-PDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDH 134 (386)
T ss_pred ccHHHHHHhcCCeEEEeCCCC---------C-CHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccc
Confidence 355677888888887774111 0 011234567899999875433334778899999999999999999888
Q ss_pred cChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHH--HhhHHHHHHHHHHHHhcCCCCCCCCcc
Q psy4626 170 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFV--VSITACTQALALIELFNAPSGRYKSDV 247 (542)
Q Consensus 170 id~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~v--md~sfa~q~la~~~L~~~~~~~~~~gv 247 (542)
+|++++.++++.+.++... |-. .....+ +-+++..++........+ +.|...-
T Consensus 135 iDl~aa~~~gI~V~n~~g~---------------------na~--sVAE~al~liL~l~R~~~~~~~~~~~--g~W~~~~ 189 (386)
T PLN03139 135 IDLPAAAAAGLTVAEVTGS---------------------NVV--SVAEDELMRILILLRNFLPGYHQVVS--GEWNVAG 189 (386)
T ss_pred cCHHHHHHCCeEEEECCCc---------------------CcH--HHHHHHHHHHHHHHcCcHHHHHHHHh--CCCcccc
Confidence 9999887665555443210 000 000000 011222221111111222 4564310
Q ss_pred ccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC--CCCCCCCC--ccccCCeee-eehhhhcccCcEEEE--
Q psy4626 248 YLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPS--YYSMDGFSV-VKLNEVIRTVDIVVT-- 316 (542)
Q Consensus 248 ~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~--ea~mdG~~v-~~~~~a~~~~d~~~t-- 316 (542)
... .-.++..+++|+ .|++..+++++.+|+. -.||.+.- ...-.|++. .+++|+++++|+|++
T Consensus 190 ~~~------~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~l 263 (386)
T PLN03139 190 IAY------RAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINT 263 (386)
T ss_pred ccC------CCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeC
Confidence 000 001355667776 8999999999999994 23444211 111235443 489999999999998
Q ss_pred --ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 317 --ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 317 --~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
+..++++|+.+.|+.||+|++++|+||+.+- |-++|.+
T Consensus 264 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~ 303 (386)
T PLN03139 264 PLTEKTRGMFNKERIAKMKKGVLIVNNARGAIM-DTQAVAD 303 (386)
T ss_pred CCCHHHHHHhCHHHHhhCCCCeEEEECCCCchh-hHHHHHH
Confidence 6678999999999999999999999999874 5555543
No 56
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.85 E-value=7e-09 Score=114.15 Aligned_cols=92 Identities=22% Similarity=0.334 Sum_probs=77.6
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--CH----------------H------HH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KL----------------N------EV 129 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~l----------------~------e~ 129 (542)
..+|++|+|+|+|++|+..++.++.+|++|+++|+++.|+.++...|.+.. +. + +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 357999999999999999999999999999999999999999988898732 11 1 11
Q ss_pred ----hcCCcEEEEcCCCc-----ccCCHHHHhccCCCeEEEeccC
Q psy4626 130 ----IRTVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 130 ----l~~aDvVi~atG~~-----~lI~~e~l~~mk~GailvnvG~ 165 (542)
++++|++|+|+|.+ .++.++.++.||+|++++.+|.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 25799999999863 3666799999999999999986
No 57
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.84 E-value=5.3e-08 Score=103.79 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=115.9
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++..+.+ -++++.++ .++=..+..++.|-+.+|.+++.++++.+.....
T Consensus 33 ~~l~daD~liv~s~t--~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg-------------------- 89 (378)
T PRK15438 33 AQLADADALMVRSVT--KVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPG-------------------- 89 (378)
T ss_pred HHhCCCcEEEEcCCC--CCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEEEECCC--------------------
Confidence 346889998875443 36666664 4555667788888788999988765544432210
Q ss_pred cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626 208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL 283 (542)
Q Consensus 208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~ 283 (542)
.| ..+.|..+++.+-.+.. +... ++..+++|+ .|++..+++++++|+
T Consensus 90 -~n-----------a~aVAE~~~~~lL~l~r---~~g~--------------~L~gktvGIIG~G~IG~~vA~~l~a~G~ 140 (378)
T PRK15438 90 -CN-----------AIAVVEYVFSSLLMLAE---RDGF--------------SLHDRTVGIVGVGNVGRRLQARLEALGI 140 (378)
T ss_pred -cC-----------chHHHHHHHHHHHHHhc---cCCC--------------CcCCCEEEEECcCHHHHHHHHHHHHCCC
Confidence 01 22344444444322221 1111 345677777 999999999999999
Q ss_pred CC--CCCCCCCccccCCeeeeehhhhcccCcEEEE----ccC----CCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626 284 NK--AGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATG----NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 353 (542)
Q Consensus 284 ~e--~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg----~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l 353 (542)
.. .||.++-+ .++....++++++++||||+. +.. +.++|+.+.|++||+|++|+|+||+.+ ||-++|
T Consensus 141 ~V~~~dp~~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~v-VDe~AL 217 (378)
T PRK15438 141 KTLLCDPPRADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAV-VDNTAL 217 (378)
T ss_pred EEEEECCccccc--ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchh-cCHHHH
Confidence 53 36776532 233345689999999999996 232 889999999999999999999999987 354444
Q ss_pred c
Q psy4626 354 R 354 (542)
Q Consensus 354 ~ 354 (542)
-
T Consensus 218 ~ 218 (378)
T PRK15438 218 L 218 (378)
T ss_pred H
Confidence 3
No 58
>PRK07574 formate dehydrogenase; Provisional
Probab=98.76 E-value=4.8e-08 Score=104.41 Aligned_cols=228 Identities=13% Similarity=0.132 Sum_probs=139.2
Q ss_pred ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626 86 GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 86 G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
|..|. -+.++..|.++++++..+. .-..+.+.++++|++|.....+.-++++.++.+++-..+...|.
T Consensus 56 ~~~~~--~~~l~~~g~e~~~~~~~~~----------~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~ 123 (385)
T PRK07574 56 GELGL--RKFLEERGHELVVTSDKDG----------PDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGI 123 (385)
T ss_pred ChhhH--HHHHHhcCcEEEEeCCCCC----------CHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCc
Confidence 55554 3678888988887631110 00122445688999987532223467888999988888989999
Q ss_pred CCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCC
Q psy4626 166 SNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKS 245 (542)
Q Consensus 166 g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~ 245 (542)
|-+.+|++++.++++.+..+.. .|-.....-...+-+++..++......... ++|..
T Consensus 124 G~D~id~~aa~~~gI~V~n~~g---------------------~~a~~VAE~al~l~L~l~R~~~~~~~~~~~--g~W~~ 180 (385)
T PRK07574 124 GSDHVDLQAASEHGITVAEVTG---------------------SNSISVAEHVVMMILALVRNYEPSHRQAVE--GGWNI 180 (385)
T ss_pred ccccccHHHHHHCCcEEEcCCC---------------------CchHHHHHHHHHHHHHHHcCHHHHHHHHHh--CCCCc
Confidence 9888999988766555543321 000000000001112222222222222222 46653
Q ss_pred ccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCc--cccCCee-eeehhhhcccCcEEEE
Q psy4626 246 DVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSY--YSMDGFS-VVKLNEVIRTVDIVVT 316 (542)
Q Consensus 246 gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~e--a~mdG~~-v~~~~~a~~~~d~~~t 316 (542)
.-... .--++..+++|+ .|++..+++++++|+. -.||.+.-+ ..-.|.+ ..+++|+++.+|+|++
T Consensus 181 ~~~~~------~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l 254 (385)
T PRK07574 181 ADCVS------RSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTI 254 (385)
T ss_pred ccccc------cceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEE
Confidence 21000 001345566666 8999999999999994 335544111 1123443 3589999999999999
Q ss_pred ----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 317 ----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 317 ----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
+..++++|+.+.|++||+|++++|+||+.+- |-++|.+
T Consensus 255 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV-De~AL~~ 296 (385)
T PRK07574 255 HCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIV-DRDAVVR 296 (385)
T ss_pred cCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchh-hHHHHHH
Confidence 5668899999999999999999999999874 6555554
No 59
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.73 E-value=2.1e-07 Score=99.47 Aligned_cols=172 Identities=14% Similarity=0.241 Sum_probs=114.8
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++..+.+ -++++.++ .++-..+..++.|-+.+|.+++.++++.+....+
T Consensus 33 ~~l~daD~liv~~~t--~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg-------------------- 89 (381)
T PRK00257 33 AAVRDADVLLVRSVT--RVDRALLE-GSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPG-------------------- 89 (381)
T ss_pred HHhCCceEEEEeCCC--CCCHHHhc-CCCCeEEEECCccccccCHHHHHHCCCEEEECCC--------------------
Confidence 457899998765433 36767776 3566667788888788999988765544432210
Q ss_pred cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626 208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL 283 (542)
Q Consensus 208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~ 283 (542)
+ + ..+.|..+++.+-.+.. +... ++..+++|+ .|++..+++++++|+
T Consensus 90 -----~--n-----a~aVAE~v~~~lL~l~r---~~g~--------------~l~gktvGIIG~G~IG~~va~~l~a~G~ 140 (381)
T PRK00257 90 -----C--N-----ARGVVDYVLGSLLTLAE---REGV--------------DLAERTYGVVGAGHVGGRLVRVLRGLGW 140 (381)
T ss_pred -----c--C-----hHHHHHHHHHHHHHHhc---ccCC--------------CcCcCEEEEECCCHHHHHHHHHHHHCCC
Confidence 0 1 12334444443322211 1111 244567776 889999999999999
Q ss_pred C--CCCCCCCCccccCCeeeeehhhhcccCcEEEE----cc----CCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626 284 N--KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVT----AT----GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 353 (542)
Q Consensus 284 ~--e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~t----g~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l 353 (542)
. -.||.+.-. ..+....+++|+++++|+|++ +. -++++|+.+.|+.||+|++|+|+||+.+- |-++|
T Consensus 141 ~V~~~Dp~~~~~--~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV-de~AL 217 (381)
T PRK00257 141 KVLVCDPPRQEA--EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVV-DNQAL 217 (381)
T ss_pred EEEEECCccccc--ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCccc-CHHHH
Confidence 4 346765432 233455689999999999998 22 37899999999999999999999999884 54444
Q ss_pred c
Q psy4626 354 R 354 (542)
Q Consensus 354 ~ 354 (542)
.
T Consensus 218 ~ 218 (381)
T PRK00257 218 R 218 (381)
T ss_pred H
Confidence 3
No 60
>PLN02928 oxidoreductase family protein
Probab=98.73 E-value=5.4e-08 Score=102.80 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=117.7
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++... . -++++.++.+++-..+...|.|-+.+|++++..+++.+.......
T Consensus 57 ~~~~~~d~~i~~~-~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~------------------ 115 (347)
T PLN02928 57 DVIANYDICVPKM-M--RLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEG------------------ 115 (347)
T ss_pred HHhcCCcEEEECC-C--CCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCC------------------
Confidence 4567899877542 1 366788888887778888888878899888876555443321000
Q ss_pred cccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHH
Q psy4626 208 LVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQ 277 (542)
Q Consensus 208 Lvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~ 277 (542)
..++..+-+ ++++.++.......++ +.|... .+ .++..+++|+ .|++..+++
T Consensus 116 ------~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~--~~w~~~---~~-------~~l~gktvGIiG~G~IG~~vA~~ 177 (347)
T PLN02928 116 ------TGNAASCAEMAIYLMLGLLRKQNEMQISLKA--RRLGEP---IG-------DTLFGKTVFILGYGAIGIELAKR 177 (347)
T ss_pred ------CcChHHHHHHHHHHHHHHHhCHHHHHHHHHc--CCcccc---cc-------cCCCCCEEEEECCCHHHHHHHHH
Confidence 001111111 1222222111122222 345321 00 1355677777 899999999
Q ss_pred HhhcCCCC--CCCCCC--Ccc------------ccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcE
Q psy4626 278 AKYMGLNK--AGPFKP--SYY------------SMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCV 337 (542)
Q Consensus 278 a~~lg~~e--~~p~~a--~ea------------~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gai 337 (542)
++++|+.. .||... .+. ...++...+++|++++||||++ +..|+++|+.+.|++||+||+
T Consensus 178 l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~ 257 (347)
T PLN02928 178 LRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGAL 257 (347)
T ss_pred HhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeE
Confidence 99999943 234311 110 1122355689999999999999 678999999999999999999
Q ss_pred EEccCCCCcccccccccC
Q psy4626 338 VCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 338 l~n~gh~~~Ei~~~~l~~ 355 (542)
++|+||+.+ ||-++|-+
T Consensus 258 lINvaRG~l-Vde~AL~~ 274 (347)
T PLN02928 258 LVNIARGGL-LDYDAVLA 274 (347)
T ss_pred EEECCCccc-cCHHHHHH
Confidence 999999976 46555543
No 61
>PLN02306 hydroxypyruvate reductase
Probab=98.70 E-value=1.5e-07 Score=100.73 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=115.1
Q ss_pred HHh-cCCcEEEEcCCCcccCCHHHHhccCC--CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEec
Q psy4626 128 EVI-RTVDIVVTATGNKNVVTREHMDKMKN--GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLA 204 (542)
Q Consensus 128 e~l-~~aDvVi~atG~~~lI~~e~l~~mk~--GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa 204 (542)
+.+ .++|+++..... -++++.++.+++ -..+...|.|-+.+|++++.++++.+......
T Consensus 57 ~~~~~~~d~vi~~~~~--~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---------------- 118 (386)
T PLN02306 57 ALIGDKCDGVIGQLTE--DWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGV---------------- 118 (386)
T ss_pred HHhhcCCcEEEEcCCC--CcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCc----------------
Confidence 344 569988765322 367888998875 35666777777789999887655544332110
Q ss_pred CCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccc-cCChhhHHHHHHhcCCcccc----ccccccHHHHh
Q psy4626 205 EGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVY-LLPKKMDEYVASLHLPTFDA----HLTELSDEQAK 279 (542)
Q Consensus 205 ~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~-~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~ 279 (542)
+-.....-...+-++++.++......... ++|..-.. .... -++..+++|+ +|++..+++++
T Consensus 119 -----~~~~VAE~al~liLal~R~i~~~~~~~~~--g~w~~~~~~~~~g------~~L~gktvGIiG~G~IG~~vA~~l~ 185 (386)
T PLN02306 119 -----LTETTAELAASLSLAAARRIVEADEFMRA--GLYEGWLPHLFVG------NLLKGQTVGVIGAGRIGSAYARMMV 185 (386)
T ss_pred -----CHHHHHHHHHHHHHHHHhChHHHHHHHHc--CCCccccccccCC------cCCCCCEEEEECCCHHHHHHHHHHH
Confidence 00000000001112222222222222222 33421000 0000 1456678887 99999999974
Q ss_pred -hcCCCC--CCCCCC--Cc----ccc------C----Cee-eeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCC
Q psy4626 280 -YMGLNK--AGPFKP--SY----YSM------D----GFS-VVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNG 335 (542)
Q Consensus 280 -~lg~~e--~~p~~a--~e----a~m------d----G~~-v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~g 335 (542)
++|+.. .||+.. .+ ..- . +++ +.+++|++++||||+. +..|+++|+.+.|++||+|
T Consensus 186 ~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~g 265 (386)
T PLN02306 186 EGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKE 265 (386)
T ss_pred hcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCC
Confidence 999953 355432 11 100 0 122 3589999999999999 7789999999999999999
Q ss_pred cEEEccCCCCcccccccc
Q psy4626 336 CVVCNMGHSNTEIDVNSL 353 (542)
Q Consensus 336 ail~n~gh~~~Ei~~~~l 353 (542)
|+|+|+||+.+= |-++|
T Consensus 266 a~lIN~aRG~lV-De~AL 282 (386)
T PLN02306 266 AVLVNASRGPVI-DEVAL 282 (386)
T ss_pred eEEEECCCcccc-CHHHH
Confidence 999999999873 44444
No 62
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.66 E-value=8.2e-08 Score=105.64 Aligned_cols=91 Identities=23% Similarity=0.406 Sum_probs=76.9
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----------------------------H
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----------------------------L 126 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----------------------------l 126 (542)
.++.+|+|+|+|++|+..++.++.+|++|+++|.++.++.++...|...+. +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 467899999999999999999999999999999999988888777766421 1
Q ss_pred HHHhcCCcEEEEcC---CC--cccCCHHHHhccCCCeEEEeccC
Q psy4626 127 NEVIRTVDIVVTAT---GN--KNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 127 ~e~l~~aDvVi~at---G~--~~lI~~e~l~~mk~GailvnvG~ 165 (542)
.+.++++|++|+|. |. +.+++++.++.||+|+++++++.
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence 23357899999987 54 44789999999999999999885
No 63
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=98.65 E-value=9e-08 Score=99.93 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=89.8
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh---cC
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI---RT 132 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l---~~ 132 (542)
.++++.+.. ..+|++|+|.|.|++|..+++.++.+|+ +|++++.++.+...+...|++ +++ ..+.. ..
T Consensus 158 a~~al~~~~--~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~ 235 (343)
T PRK09880 158 AIHAAHQAG--DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGY 235 (343)
T ss_pred HHHHHHhcC--CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCC
Confidence 366665542 3479999999999999999999999999 699999999998888888875 332 22322 23
Q ss_pred CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceee
Q psy4626 133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK 184 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~ 184 (542)
.|++|+++|....+. ..++.+++|+.++.+|... .++++..+..+++++.+
T Consensus 236 ~D~vid~~G~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g 288 (343)
T PRK09880 236 FDVSFEVSGHPSSIN-TCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKG 288 (343)
T ss_pred CCEEEECCCCHHHHH-HHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEE
Confidence 899999999866664 7899999999999999753 35555555445555444
No 64
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.65 E-value=2.6e-07 Score=93.87 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=88.7
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCH---HHH----h--
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKL---NEV----I-- 130 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l---~e~----l-- 130 (542)
..++++.+.. ..+|++|+|+|.|++|..+++.++.+|++ |++++.++.|...+...|++ +++. .+. .
T Consensus 108 ta~~al~~~~--~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~ 185 (280)
T TIGR03366 108 TVMAALEAAG--DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNG 185 (280)
T ss_pred HHHHHHHhcc--CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCC
Confidence 3456665542 24899999999999999999999999996 99999999888888888875 3332 111 1
Q ss_pred cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC----CcccChHhhcCCCccee
Q psy4626 131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS----NTEIDVNSLRTPDLTWE 183 (542)
Q Consensus 131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g----~~eid~~aL~~~~l~v~ 183 (542)
.++|++++++|....+. +.++.+++++.++.+|.. ..+++...+..+++++.
T Consensus 186 ~g~d~vid~~G~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~ 241 (280)
T TIGR03366 186 RGVDVALEFSGATAAVR-ACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIR 241 (280)
T ss_pred CCCCEEEECCCChHHHH-HHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEE
Confidence 36899999999877674 789999999999999953 13556665554444443
No 65
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.65 E-value=1.5e-07 Score=98.99 Aligned_cols=197 Identities=16% Similarity=0.187 Sum_probs=123.6
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++..... -++++.++.+++-..+...|.|-+.+|++++.++++.+......
T Consensus 41 ~~~~~~d~~i~~~~~--~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~------------------- 99 (333)
T PRK13243 41 EKVRDVDALVTMLSE--RIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGV------------------- 99 (333)
T ss_pred HHhCCCcEEEEeCCC--CCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCC-------------------
Confidence 456889998764222 36778899998888899999998889999887665544432210
Q ss_pred cccccCCCChhHH--HhhHHHHHHHHHHHHhcCCCCCCCCccc-cCChhhHHHHHHhcCCcccc----ccccccHHHHhh
Q psy4626 208 LVNLSCSSLPSFV--VSITACTQALALIELFNAPSGRYKSDVY-LLPKKMDEYVASLHLPTFDA----HLTELSDEQAKY 280 (542)
Q Consensus 208 Lvnl~~~thp~~v--md~sfa~q~la~~~L~~~~~~~~~~gv~-~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~ 280 (542)
| +. .....+ +-++++.++.......++ +.|...-+ .-+... .-.++..+++|+ .|++..+++++.
T Consensus 100 --~-~~-~vAE~~~~l~L~~~R~~~~~~~~~~~--g~W~~~~~~~~~~~~--~g~~L~gktvgIiG~G~IG~~vA~~l~~ 171 (333)
T PRK13243 100 --L-TE-ATADFAWALLLATARRLVEADHFVRS--GEWKRRGVAWHPLMF--LGYDVYGKTIGIIGFGRIGQAVARRAKG 171 (333)
T ss_pred --C-hH-HHHHHHHHHHHHHHhCHHHHHHHHHc--CCCCccccccccccc--cccCCCCCEEEEECcCHHHHHHHHHHHH
Confidence 0 00 000011 112233333222222332 46653200 000000 001456677776 899999999999
Q ss_pred cCCC--CCCCCCC-CccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626 281 MGLN--KAGPFKP-SYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 353 (542)
Q Consensus 281 lg~~--e~~p~~a-~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l 353 (542)
+|+. -.||... ..+.-.|+...+++|++++||+|+. +..++++|+.+.|+.||+|++|+|+|++..- |-++|
T Consensus 172 ~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~v-d~~aL 250 (333)
T PRK13243 172 FGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVV-DTKAL 250 (333)
T ss_pred CCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhc-CHHHH
Confidence 9983 2244322 1222346666789999999999999 4567899999999999999999999999875 54444
Q ss_pred c
Q psy4626 354 R 354 (542)
Q Consensus 354 ~ 354 (542)
.
T Consensus 251 ~ 251 (333)
T PRK13243 251 V 251 (333)
T ss_pred H
Confidence 4
No 66
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.63 E-value=1.1e-07 Score=101.27 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=73.9
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCcee-------eCHHHHhcCCcEEEEcC---C--
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-------VKLNEVIRTVDIVVTAT---G-- 141 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v-------~~l~e~l~~aDvVi~at---G-- 141 (542)
+.+++|+|+|+|.+|+.+++.|+.+|++|+++|+++.+...+. ..+..+ ..+.+.+.++|+||+|+ |
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 4678899999999999999999999999999999988765443 233321 12456678999999987 4
Q ss_pred CcccCCHHHHhccCCCeEEEeccCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++.+++++.++.||+++++++++..
T Consensus 245 ~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 245 APKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred CCcCcCHHHHhcCCCCCEEEEEecC
Confidence 2566889999999999999999853
No 67
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.62 E-value=1.6e-07 Score=104.49 Aligned_cols=192 Identities=17% Similarity=0.280 Sum_probs=122.9
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++....+ -++++.++.+++-..+...|.|-+.+|++++.++++.+.....
T Consensus 36 ~~~~~~d~li~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg-------------------- 93 (525)
T TIGR01327 36 EIIPDYDALIVRSAT--KVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPT-------------------- 93 (525)
T ss_pred HHhcCCCEEEEcCCC--CcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCC--------------------
Confidence 456889998875433 3677888988888888899999888999988765554443211
Q ss_pred cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626 208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL 283 (542)
Q Consensus 208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~ 283 (542)
.|-.....-...|-++++.++-......+. ++|...-+ .. .++..+++|+ .|++..+++++++|+
T Consensus 94 -~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~--g~W~~~~~-~g-------~~l~gktvgIiG~G~IG~~vA~~l~~fG~ 162 (525)
T TIGR01327 94 -GNTISAAEHALAMLLAAARNIPQADASLKE--GEWDRKAF-MG-------TELYGKTLGVIGLGRIGSIVAKRAKAFGM 162 (525)
T ss_pred -cChHHHHHHHHHHHHHHhcCHHHHHHHHHc--CCcccccc-Cc-------cccCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence 000000000111112233322222222222 46754211 01 1355677776 889999999999998
Q ss_pred C--CCCCCCCC-ccccCCeeee-ehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626 284 N--KAGPFKPS-YYSMDGFSVV-KLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 353 (542)
Q Consensus 284 ~--e~~p~~a~-ea~mdG~~v~-~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l 353 (542)
. -.||+..- .+.-.|++.+ +++|+++++|+|++ +..++++|+.+.|++||+|++++|+||+.+- |-++|
T Consensus 163 ~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v-de~aL 239 (525)
T TIGR01327 163 KVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGII-DEAAL 239 (525)
T ss_pred EEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCcee-CHHHH
Confidence 4 33564221 2223466654 79999999999998 5578999999999999999999999999874 43333
No 68
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.55 E-value=6.9e-07 Score=87.37 Aligned_cols=93 Identities=19% Similarity=0.311 Sum_probs=72.7
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-CceeeCHHHHh-cCCcEEEEcCCCcccCCHH
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVVKLNEVI-RTVDIVVTATGNKNVVTRE 149 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e 149 (542)
+..+.|++++|+|+|.+|+.+|+.|..+|++|+++|+++.+..+.... |...++.++++ ..+|+++.|+. .++++.+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-~~~I~~~ 101 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-GGVINDD 101 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-ccccCHH
Confidence 467899999999999999999999999999999999998776554333 66666666666 47999997653 3588988
Q ss_pred HHhccCCCeEEEeccCC
Q psy4626 150 HMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 150 ~l~~mk~GailvnvG~g 166 (542)
.++.|+.. +++--+-+
T Consensus 102 ~~~~l~~~-~v~~~AN~ 117 (200)
T cd01075 102 TIPQLKAK-AIAGAANN 117 (200)
T ss_pred HHHHcCCC-EEEECCcC
Confidence 99999754 44444433
No 69
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.53 E-value=4.5e-07 Score=100.85 Aligned_cols=192 Identities=18% Similarity=0.271 Sum_probs=123.5
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGR 207 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~Gr 207 (542)
+.++++|+++....+ -++++.++.+++-..+...|.|-+.+|++++.++++.+......
T Consensus 38 ~~~~~~d~~i~~~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~------------------- 96 (526)
T PRK13581 38 EIIGDYDALIVRSAT--KVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTG------------------- 96 (526)
T ss_pred HHhcCCCEEEEcCCC--CCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCC-------------------
Confidence 446889998875433 46778899998888899999998889999887655544332100
Q ss_pred cccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCC
Q psy4626 208 LVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGL 283 (542)
Q Consensus 208 Lvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~ 283 (542)
|-.....-...+-++++.++-......++ ++|...-+ .. -++..+++|+ .|++..+++++++|+
T Consensus 97 --~~~~vAE~~l~l~L~~~R~~~~~~~~~~~--g~W~~~~~-~g-------~~l~gktvgIiG~G~IG~~vA~~l~~fG~ 164 (526)
T PRK13581 97 --NTISAAEHTIALMLALARNIPQAHASLKA--GKWERKKF-MG-------VELYGKTLGIIGLGRIGSEVAKRAKAFGM 164 (526)
T ss_pred --ChHHHHHHHHHHHHHHHcCHHHHHHHHHc--CCCCccCc-cc-------cccCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence 00000000001112222222222222222 46754211 01 1355667776 899999999999999
Q ss_pred C--CCCCCCCC-ccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccc
Q psy4626 284 N--KAGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 353 (542)
Q Consensus 284 ~--e~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l 353 (542)
. -.||+..- .+.-.|++..+++|+++++|+|+. +..++++|+.+.|++||+|++|+|+||+.+- |-++|
T Consensus 165 ~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~v-de~aL 240 (526)
T PRK13581 165 KVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGII-DEAAL 240 (526)
T ss_pred EEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCcee-CHHHH
Confidence 4 33564322 223457777799999999999999 4568899999999999999999999999884 43333
No 70
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.50 E-value=2.8e-07 Score=86.87 Aligned_cols=90 Identities=22% Similarity=0.368 Sum_probs=67.4
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch-hhhhhhcCCceeeCHHHHhcCCcEEEEcCCC---cccCCHHH
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI-CALQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTREH 150 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~-r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~~lI~~e~ 150 (542)
+.||+|.|+|||.-|...|+.||..|.+|++..+... ....|..+||++.+..|+++.+|+|+..+.. +.+...+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I 81 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEEI 81 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHHH
Confidence 5799999999999999999999999999999887665 4557889999999999999999999997532 23443455
Q ss_pred HhccCCCeEEEecc
Q psy4626 151 MDKMKNGCVVCNMG 164 (542)
Q Consensus 151 l~~mk~GailvnvG 164 (542)
...||+|..++..-
T Consensus 82 ~p~l~~G~~L~fah 95 (165)
T PF07991_consen 82 APNLKPGATLVFAH 95 (165)
T ss_dssp HHHS-TT-EEEESS
T ss_pred HhhCCCCCEEEeCC
Confidence 56899999887644
No 71
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.46 E-value=1.3e-06 Score=89.79 Aligned_cols=92 Identities=24% Similarity=0.444 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.+++.-+.+ .+..+.|++|+|+|.|. +|+.+|..|...|++|++++... .++.+.+++||+||
T Consensus 141 Tp~ai~~ll~~-~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVI 206 (286)
T PRK14175 141 TPLGIMEILKH-ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIV 206 (286)
T ss_pred cHHHHHHHHHH-cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEE
Confidence 34555554444 35679999999999998 99999999999999999998432 35677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.++|.+++++++ .+|+|++++++|...
T Consensus 207 sAvg~p~~i~~~---~vk~gavVIDvGi~~ 233 (286)
T PRK14175 207 SAVGKPGLVTKD---VVKEGAVIIDVGNTP 233 (286)
T ss_pred ECCCCCcccCHH---HcCCCcEEEEcCCCc
Confidence 999999999865 479999999999753
No 72
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.44 E-value=6.7e-07 Score=91.81 Aligned_cols=91 Identities=29% Similarity=0.424 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCChh-HHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGEV-GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~I-G~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-++++.-+ +..+..+.|++|+|+|.|.+ |+.++..|...|++|++++.. .-++.+.++.||+||
T Consensus 141 Tp~aii~lL-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV 206 (285)
T PRK14189 141 TPYGVMKML-ESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVV 206 (285)
T ss_pred CHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEE
Confidence 344555433 34567899999999999998 999999999999999998731 235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++. +.+|+|++++++|..
T Consensus 207 ~avG~~~~i~~---~~ik~gavVIDVGin 232 (285)
T PRK14189 207 AAVGKRNVLTA---DMVKPGATVIDVGMN 232 (285)
T ss_pred EcCCCcCccCH---HHcCCCCEEEEcccc
Confidence 99999999985 568999999999964
No 73
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.44 E-value=4.7e-07 Score=92.79 Aligned_cols=89 Identities=29% Similarity=0.415 Sum_probs=72.7
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCcee-------eCHHHHhcCCcEEEEcC---C--C
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-------VKLNEVIRTVDIVVTAT---G--N 142 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~v-------~~l~e~l~~aDvVi~at---G--~ 142 (542)
...+|+|+|+|-+|...|+.+.++|++|++.|+|+.|+.+-. ..+.++ .++++.+..+|++|.+. | .
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 346899999999999999999999999999999998865432 223332 13577889999999853 3 6
Q ss_pred cccCCHHHHhccCCCeEEEecc
Q psy4626 143 KNVVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 143 ~~lI~~e~l~~mk~GailvnvG 164 (542)
+.++.++++..||||++++.++
T Consensus 247 PkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 247 PKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ceehhHHHHHhcCCCcEEEEEE
Confidence 6788889999999999999988
No 74
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.43 E-value=3.4e-06 Score=87.39 Aligned_cols=225 Identities=17% Similarity=0.256 Sum_probs=136.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEc-CCC-----cc-----
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTA-TGN-----KN----- 144 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~a-tG~-----~~----- 144 (542)
|++++|+|.=.--..+++.|...|++|.++..+.. .-...|+... +.++++.++|+++.- .++ -.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~---~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQL---DHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccc---ccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 78999999888889999999999999999754321 1123477665 457788999999973 111 01
Q ss_pred ---cCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHH
Q psy4626 145 ---VVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVV 221 (542)
Q Consensus 145 ---lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vm 221 (542)
-++.+.++.||+|..++ +|.....++ +.+..+++++.+.. + .+.+.++ |
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~--------~-~~~~~~~------n----------- 130 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELF--------E-RDDVAIL------N----------- 130 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEe--------c-cchhhhh------c-----------
Confidence 12567899999997544 577765554 44444444443211 0 0011111 1
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCcccc
Q psy4626 222 SITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYYSM 296 (542)
Q Consensus 222 d~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea~m 296 (542)
+.+.+.-. ..+.+++ ++..++. .+.-.+|. .+++.....++.+|+. ..+|.+..++..
T Consensus 131 s~~~aega--v~~a~~~----~~~~l~g-----------~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~ 193 (296)
T PRK08306 131 SIPTAEGA--IMMAIEH----TPITIHG-----------SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE 193 (296)
T ss_pred cHhHHHHH--HHHHHHh----CCCCCCC-----------CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 11111111 1111221 1111100 01222333 5677777788888872 234544444555
Q ss_pred CCeeeee---hhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626 297 DGFSVVK---LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350 (542)
Q Consensus 297 dG~~v~~---~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~ 350 (542)
.|++... +.+.++.+|+||+++.. .+|+.+.++.||+|+++++.+.-....|.
T Consensus 194 ~G~~~~~~~~l~~~l~~aDiVI~t~p~-~~i~~~~l~~~~~g~vIIDla~~pggtd~ 249 (296)
T PRK08306 194 MGLSPFHLSELAEEVGKIDIIFNTIPA-LVLTKEVLSKMPPEALIIDLASKPGGTDF 249 (296)
T ss_pred cCCeeecHHHHHHHhCCCCEEEECCCh-hhhhHHHHHcCCCCcEEEEEccCCCCcCe
Confidence 6766553 46788999999999875 46899999999999999999887655553
No 75
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.43 E-value=7.7e-07 Score=93.25 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=92.3
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCH--H---HHh-cCC
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKL--N---EVI-RTV 133 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l--~---e~l-~~a 133 (542)
-.++++++++ ..-+|++|+|+|.|-+|....|.++++|++|+++|+++.++..|.+.|.+. ++. . +.+ +.+
T Consensus 153 iT~y~alk~~--~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 153 ITTYRALKKA--NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIA 230 (339)
T ss_pred eeEeeehhhc--CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhC
Confidence 4456677764 345899999999999999999999999999999999999999999999863 221 1 222 349
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC-cc---cChHhhcCCCcceeee
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN-TE---IDVNSLRTPDLTWEKV 185 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~-~e---id~~aL~~~~l~v~~~ 185 (542)
|+++++.+ ...++ +.++.|++++.++.+|-.. .+ ++...+..+++++.++
T Consensus 231 d~ii~tv~-~~~~~-~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS 284 (339)
T COG1064 231 DAIIDTVG-PATLE-PSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGS 284 (339)
T ss_pred cEEEECCC-hhhHH-HHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEE
Confidence 99999998 77785 7899999999999999873 22 3334444444444443
No 76
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.42 E-value=9.7e-08 Score=91.42 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=71.2
Q ss_pred HhcCCcccc----ccccccHHHHhhcCCCC--CCCCCCCc--cccCCeeeeehhhhcccCcEEEE----ccCCCCccCHh
Q psy4626 260 SLHLPTFDA----HLTELSDEQAKYMGLNK--AGPFKPSY--YSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTRE 327 (542)
Q Consensus 260 ~l~L~~lg~----~i~~lt~~~a~~lg~~e--~~p~~a~e--a~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~ 327 (542)
++..+++|+ +|++..+++++++|+.. .||...-+ +.-.|++..+++|+++++|+|+. +..|+++|+.+
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~ 112 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAE 112 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeee
Confidence 445567776 99999999999999953 34555543 35678888999999999999999 66789999999
Q ss_pred HHhcCCCCcEEEccCCCCc
Q psy4626 328 HMDKMKNGCVVCNMGHSNT 346 (542)
Q Consensus 328 ~~~~mk~gail~n~gh~~~ 346 (542)
.|++||+|++++|+||+++
T Consensus 113 ~l~~mk~ga~lvN~aRG~~ 131 (178)
T PF02826_consen 113 FLAKMKPGAVLVNVARGEL 131 (178)
T ss_dssp HHHTSTTTEEEEESSSGGG
T ss_pred eeeccccceEEEeccchhh
Confidence 9999999999999999876
No 77
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.41 E-value=1.7e-06 Score=89.09 Aligned_cols=92 Identities=25% Similarity=0.433 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.+++..+.+ .+..+.|++|+|+|.|. +|+.++..|...|++|+++++. ..++.+.++++|+||
T Consensus 142 T~~gii~~L~~-~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~-------------t~~L~~~~~~aDIvI 207 (283)
T PRK14192 142 TPAGIMRLLKA-YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR-------------TQNLPELVKQADIIV 207 (283)
T ss_pred cHHHHHHHHHH-cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC-------------chhHHHHhccCCEEE
Confidence 34555555444 46789999999999998 9999999999999999999841 124556678999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.|+|.++.++.+ .+++|++++++|...
T Consensus 208 ~AtG~~~~v~~~---~lk~gavViDvg~n~ 234 (283)
T PRK14192 208 GAVGKPELIKKD---WIKQGAVVVDAGFHP 234 (283)
T ss_pred EccCCCCcCCHH---HcCCCCEEEEEEEee
Confidence 999988888754 479999999999664
No 78
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.39 E-value=4.3e-06 Score=86.29 Aligned_cols=227 Identities=17% Similarity=0.238 Sum_probs=136.5
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHH-HHhcCCcEEEEc-CC-------------
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN-EVIRTVDIVVTA-TG------------- 141 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~-e~l~~aDvVi~a-tG------------- 141 (542)
|++++|+|.=.--..+++.|...|++|.++-.+.. ... -.|+...++. +.+.++|++|.= +|
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~--~~~-~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~ 77 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQL--EDG-FTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN 77 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccc--ccc-cccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence 67899999888889999999999999999864321 011 1244444444 458999999981 11
Q ss_pred CcccCCHHHHhccCCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHH
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVV 221 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vm 221 (542)
.+-.++++.++.++++++ +.+|..+..++. ....+++.+... .+...+... |
T Consensus 78 ~~~~l~~~~l~~~~~~~~-~~~G~~~~~l~~-~a~~~gi~v~~~---------~~~~~va~~------n----------- 129 (287)
T TIGR02853 78 EKVVLTPELLESTKGHCT-IYVGISNPYLEQ-LAADAGVKLIEL---------FERDDVAIY------N----------- 129 (287)
T ss_pred CCccccHHHHHhcCCCCE-EEEecCCHHHHH-HHHHCCCeEEEE---------EeccceEEE------c-----------
Confidence 111245788999998665 566766655443 444444443321 111111111 1
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccHHHHhhcCCC----CCCCCCCCc
Q psy4626 222 SITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQAKYMGLN----KAGPFKPSY 293 (542)
Q Consensus 222 d~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a~~lg~~----e~~p~~a~e 293 (542)
+.+.+..+++.. .+.. +. .++.++.++ .+++...+.++.+|+. ..+|.+..+
T Consensus 130 ~~~~Ae~ai~~a--l~~~----~~--------------~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 130 SIPTAEGAIMMA--IEHT----DF--------------TIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLAR 189 (287)
T ss_pred cHhHHHHHHHHH--HHhc----CC--------------CCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 112222222211 1110 00 112233332 6777777888888862 223333333
Q ss_pred cccCCeeee---ehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 294 YSMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 294 a~mdG~~v~---~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
+...|+... .++++++++|+||.++... +++.+.++.||++++++|.+....+.|....++
T Consensus 190 ~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-ii~~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~ 253 (287)
T TIGR02853 190 ITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-VLTADVLSKLPKHAVIIDLASKPGGTDFEYAKK 253 (287)
T ss_pred HHHCCCeeecHHHHHHHhccCCEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCCCCCCHHHHHH
Confidence 333455544 4577899999999988654 789999999999999999999999988754443
No 79
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=98.37 E-value=1.3e-06 Score=90.12 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=75.8
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceeeCHHH-HhcCCcEEEEc
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVVKLNE-VIRTVDIVVTA 139 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~~l~e-~l~~aDvVi~a 139 (542)
..|+++.+. ...|++|+|+|.|+||..+++.++.+|++ |+++|.++.|+..+... .+++..+ .-.++|++|+|
T Consensus 133 ~a~~~~~~~---~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--~~i~~~~~~~~g~Dvvid~ 207 (308)
T TIGR01202 133 TARHAVAGA---EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--EVLDPEKDPRRDYRAIYDA 207 (308)
T ss_pred HHHHHHHhc---ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--cccChhhccCCCCCEEEEC
Confidence 346666553 23688999999999999999999999996 66678888777655433 2333322 22468999999
Q ss_pred CCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 140 TGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
+|....++ +.++.+++++.++.+|...
T Consensus 208 ~G~~~~~~-~~~~~l~~~G~iv~~G~~~ 234 (308)
T TIGR01202 208 SGDPSLID-TLVRRLAKGGEIVLAGFYT 234 (308)
T ss_pred CCCHHHHH-HHHHhhhcCcEEEEEeecC
Confidence 99876664 7899999999999998653
No 80
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.36 E-value=3e-06 Score=80.23 Aligned_cols=92 Identities=32% Similarity=0.461 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEE
Q psy4626 58 MCRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136 (542)
Q Consensus 58 g~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvV 136 (542)
.+-+++++-+.+ .+..+.||+|+|+|-+. +|+.++..|...|+.|++++.. ..++++.++.||+|
T Consensus 18 cTp~aii~lL~~-~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~-------------T~~l~~~~~~ADIV 83 (160)
T PF02882_consen 18 CTPLAIIELLEY-YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK-------------TKNLQEITRRADIV 83 (160)
T ss_dssp HHHHHHHHHHHH-TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT-------------SSSHHHHHTTSSEE
T ss_pred CCHHHHHHHHHh-cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC-------------CCcccceeeeccEE
Confidence 455667765544 56789999999999985 8999999999999999999732 24567778999999
Q ss_pred EEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 137 VTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 137 i~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.+.|.+++|..+ .+|+|++++++|..
T Consensus 84 Vsa~G~~~~i~~~---~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 84 VSAVGKPNLIKAD---WIKPGAVVIDVGIN 110 (160)
T ss_dssp EE-SSSTT-B-GG---GS-TTEEEEE--CE
T ss_pred eeeeccccccccc---cccCCcEEEecCCc
Confidence 9999999999754 57999999999964
No 81
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=98.36 E-value=3.4e-06 Score=89.82 Aligned_cols=144 Identities=12% Similarity=0.127 Sum_probs=96.3
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCce-eeCH------HHHhcCC
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFS-VVKL------NEVIRTV 133 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~-v~~l------~e~l~~a 133 (542)
..|+++.+.......|++|+|.|.|++|..+++.++.+|++|++++.++.+ ...+...|++ +++. .+...++
T Consensus 164 ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~ 243 (375)
T PLN02178 164 TVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTM 243 (375)
T ss_pred HHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCC
Confidence 345555443222247999999999999999999999999999999876554 4445567765 3221 1223468
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceeeeccce-eeEecCCCCEEEEecCCCccc
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQV-DHVIWPDGKRIVLLAEGRLVN 210 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~~~~~v-~~y~~~dg~~I~LLa~GrLvn 210 (542)
|++++++|....+. +.++.+++++.++.+|... .+++...+..+++++.++.... ..+ .+.+.++++|++..
T Consensus 244 D~vid~~G~~~~~~-~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~----~~~~~l~~~g~i~~ 318 (375)
T PLN02178 244 DFIIDTVSAEHALL-PLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKET----QEMLEFCAKHKIVS 318 (375)
T ss_pred cEEEECCCcHHHHH-HHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHH----HHHHHHHHhCCCcc
Confidence 99999999765564 6899999999999998643 3556665555555555433211 111 23556777777653
No 82
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.34 E-value=1.4e-06 Score=82.05 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=68.5
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC---HH--HH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---RE--HM 151 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~---~e--~l 151 (542)
++|++||.|.+|..+|+.|...|.+|++||+++.+.......|... .++.++++.+|+|+.+..+...+. .. .+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 4899999999999999999999999999999998887777778764 578899999999999875533332 12 46
Q ss_pred hccCCCeEEEeccCCC
Q psy4626 152 DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 152 ~~mk~GailvnvG~g~ 167 (542)
+.+++|.++++++..+
T Consensus 82 ~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTIS 97 (163)
T ss_dssp GGS-TTEEEEE-SS--
T ss_pred hccccceEEEecCCcc
Confidence 6789999999998764
No 83
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=98.33 E-value=1.8e-06 Score=90.50 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=75.1
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeC---CchhhhhhhcCCceeeCHH-----H--HhcCCcEEEEcCCCcc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI---DPICALQACMDGFSVVKLN-----E--VIRTVDIVVTATGNKN 144 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~---dp~r~~~A~~~G~~v~~l~-----e--~l~~aDvVi~atG~~~ 144 (542)
..|++|+|+|.|.+|..+++.++..|++|+++++ ++.|...+...|+..++.. + ...++|+||+++|...
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~ 250 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP 250 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH
Confidence 4799999999999999999999999999999987 5777777777887654321 1 1246899999999766
Q ss_pred cCCHHHHhccCCCeEEEeccCCC
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.+. +.++.+++++.++.+|...
T Consensus 251 ~~~-~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 251 LAF-EALPALAPNGVVILFGVPG 272 (355)
T ss_pred HHH-HHHHHccCCcEEEEEecCC
Confidence 664 7899999999999988653
No 84
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=98.33 E-value=2.1e-06 Score=90.71 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=83.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHHh-----cCCcEEEEcCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEVI-----RTVDIVVTATG 141 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l-----~~aDvVi~atG 141 (542)
...|++|+|.|.|++|..+++.++.+|+ +|++++.++.|+..+...|++ +++. .+.+ .++|++|+|+|
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence 4579999999999999999999999999 699999999998888778874 3321 1111 25899999998
Q ss_pred CcccCCHHHHhccCCCeEEEeccCCC----cccChHhhcCCCcceeee
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKV 185 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g~----~eid~~aL~~~~l~v~~~ 185 (542)
....+. ..++.+++++.++.+|... ..++...+..+++++.++
T Consensus 269 ~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~ 315 (371)
T cd08281 269 SVPALE-TAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGS 315 (371)
T ss_pred ChHHHH-HHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEE
Confidence 766664 6889999999999988642 234444454455555443
No 85
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.33 E-value=3.9e-06 Score=80.02 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=67.3
Q ss_pred ccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626 73 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 73 ~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l 151 (542)
..+.|++|+|+|+|. +|..+|+.|...|++|++++++. .++.+.+.++|+||.++|.+++++++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~~ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKPGLVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCCceecHHH-
Confidence 468999999999998 59999999999999999998642 245567899999999999988998764
Q ss_pred hccCCCeEEEeccCCC
Q psy4626 152 DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 152 ~~mk~GailvnvG~g~ 167 (542)
++++.+++++|...
T Consensus 106 --~~~~~viIDla~pr 119 (168)
T cd01080 106 --VKPGAVVIDVGINR 119 (168)
T ss_pred --ccCCeEEEEccCCC
Confidence 57899999999753
No 86
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.31 E-value=2.5e-06 Score=88.18 Aligned_cols=90 Identities=24% Similarity=0.350 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.- .+..+..+.||+|+|+|.| .+|+.+|..|...|++|++|+... .++.++++.||+||.
T Consensus 143 p~aii~l-L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 143 PSGCLRL-LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------TDAKALCRQADIVVA 208 (301)
T ss_pred HHHHHHH-HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhcCCEEEE
Confidence 3444443 3445678999999999996 999999999999999999997532 157788899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|.++.+.... +|+|++++++|..
T Consensus 209 avg~~~~v~~~~---ik~GaiVIDvgin 233 (301)
T PRK14194 209 AVGRPRLIDADW---LKPGAVVIDVGIN 233 (301)
T ss_pred ecCChhcccHhh---ccCCcEEEEeccc
Confidence 999999997543 8999999999953
No 87
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.31 E-value=1.8e-06 Score=90.61 Aligned_cols=92 Identities=23% Similarity=0.408 Sum_probs=72.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhhcCCceeeCHHHHhcCCcEEEEcCCC---cccCCHH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTRE 149 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~~lI~~e 149 (542)
.+.|++|+|||+|.+|..+|+.|+.+|.+|+++++++.+. ..+...|+.+.+.+++++.+|+|+.+... ..+++.+
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~ 93 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE 93 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999987664443 34556788888889999999999998642 3344345
Q ss_pred HHhccCCCeEEEeccCC
Q psy4626 150 HMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 150 ~l~~mk~GailvnvG~g 166 (542)
.+..|++|.++ ..++|
T Consensus 94 I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 94 IEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHhcCCCCCEE-EECCC
Confidence 66788999888 44444
No 88
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=98.30 E-value=1.4e-06 Score=90.53 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=99.3
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCHH----------HHhc-CCcEEEEc
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKLN----------EVIR-TVDIVVTA 139 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l~----------e~l~-~aDvVi~a 139 (542)
...+|.+|+|+|+|-+|+.+.+.++..|+ +++++|++|.|+..|.+.|+. +++.. ++.. ++|..|+|
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~ 261 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFEC 261 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEc
Confidence 45689999999999999999999999999 899999999999999999985 44432 1223 89999999
Q ss_pred CCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhc--CCCcceeeeccc--eeeEecCCCCEEEEecCCCcccccC
Q psy4626 140 TGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLR--TPDLTWEKVRSQ--VDHVIWPDGKRIVLLAEGRLVNLSC 213 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~--~~~l~v~~~~~~--v~~y~~~dg~~I~LLa~GrLvnl~~ 213 (542)
+|+...+. +.|+...+++..+.+|..+ .++++..+. .+ -.++++... ..++.+ ++-+.+--+|+++.-..
T Consensus 262 ~G~~~~~~-~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~di--P~lv~~y~~Gkl~~d~l 337 (366)
T COG1062 262 VGNVEVMR-QALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDI--PRLVDLYMAGKLPLDRL 337 (366)
T ss_pred cCCHHHHH-HHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccch--hHHHHHHHcCCCchhHH
Confidence 99998884 8899998899999888874 566655333 22 233333211 112222 23444555677665443
Q ss_pred CC
Q psy4626 214 SS 215 (542)
Q Consensus 214 ~t 215 (542)
.|
T Consensus 338 vt 339 (366)
T COG1062 338 VT 339 (366)
T ss_pred hh
Confidence 33
No 89
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=4.7e-06 Score=85.63 Aligned_cols=90 Identities=22% Similarity=0.351 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.- .+..+..+.|++|+|+|-| .+|+.+|..|...||+|++++... -++.+.++.||+||.
T Consensus 141 p~avi~l-L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 141 PMGVMRL-LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCV 206 (285)
T ss_pred HHHHHHH-HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEE
Confidence 4445543 3444678999999999999 789999999999999999997321 235677899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|.+++++.+. +|+|++++++|..
T Consensus 207 AvG~p~~i~~~~---vk~GavVIDvGi~ 231 (285)
T PRK14191 207 GVGKPDLIKASM---VKKGAVVVDIGIN 231 (285)
T ss_pred ecCCCCcCCHHH---cCCCcEEEEeecc
Confidence 999999998665 5999999999963
No 90
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=98.28 E-value=6.6e-06 Score=86.89 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=80.7
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCce-eeCH------HHHhcCC
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFS-VVKL------NEVIRTV 133 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~-v~~l------~e~l~~a 133 (542)
..|+++.+.. ....|++|+|.|.|+||..+++.++.+|++|++++.++.+.. .+...|++ +++. .+...++
T Consensus 170 ta~~al~~~~-~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~ 248 (360)
T PLN02586 170 TVYSPMKYYG-MTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTM 248 (360)
T ss_pred HHHHHHHHhc-ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCC
Confidence 3455554432 234799999999999999999999999999998887766543 33456764 2221 1223468
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhc
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLR 176 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~ 176 (542)
|++++++|....+. +.++.+++++.++.+|... .++++..+.
T Consensus 249 D~vid~~g~~~~~~-~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~ 292 (360)
T PLN02586 249 DYIIDTVSAVHALG-PLLGLLKVNGKLITLGLPEKPLELPIFPLV 292 (360)
T ss_pred CEEEECCCCHHHHH-HHHHHhcCCcEEEEeCCCCCCCccCHHHHH
Confidence 99999999766664 6899999999999998642 345554443
No 91
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.28 E-value=5.2e-06 Score=85.29 Aligned_cols=91 Identities=23% Similarity=0.379 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.++++-+.+ .+..+.|++++|+|.|. +|+.++..|...||+|++++.. .-++.+.++.||++|
T Consensus 142 Tp~av~~ll~~-~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvi 207 (285)
T PRK10792 142 TPRGIMTLLER-YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF-------------TKNLRHHVRNADLLV 207 (285)
T ss_pred CHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC-------------CCCHHHHHhhCCEEE
Confidence 34555554443 45788999999999998 8999999999999999999732 235777889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.++++.. +.+|+|++++++|..
T Consensus 208 ~avG~p~~v~~---~~vk~gavVIDvGin 233 (285)
T PRK10792 208 VAVGKPGFIPG---EWIKPGAIVIDVGIN 233 (285)
T ss_pred EcCCCcccccH---HHcCCCcEEEEcccc
Confidence 99999999985 557999999999943
No 92
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.28 E-value=4.2e-06 Score=86.02 Aligned_cols=91 Identities=25% Similarity=0.400 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.+++.-+.+ .+..+.|++|+|+|.+. +|+.++..|...||+|++++.. .-++.+.+++||+||
T Consensus 147 Tp~av~~ll~~-~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvv 212 (287)
T PRK14176 147 TPHGVIRALEE-YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF-------------TDDLKKYTLDADILV 212 (287)
T ss_pred cHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEecc-------------CCCHHHHHhhCCEEE
Confidence 34555554443 46788999999999998 8999999999999999999831 235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+ .+|+|++++++|..
T Consensus 213 ~AvG~p~~i~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 213 VATGVKHLIKAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred EccCCccccCHH---HcCCCcEEEEeccc
Confidence 999999999855 57999999999963
No 93
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.27 E-value=4.4e-06 Score=79.22 Aligned_cols=91 Identities=30% Similarity=0.417 Sum_probs=67.6
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--e-------------------------CH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--V-------------------------KL 126 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--~-------------------------~l 126 (542)
.++..+|+|+|.|.+|++.++.|+++|++|++.|..+.+..+....+... + .+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 45678999999999999999999999999999999887765554444331 1 12
Q ss_pred HHHhcCCcEEEEc-----CCCcccCCHHHHhccCCCeEEEecc
Q psy4626 127 NEVIRTVDIVVTA-----TGNKNVVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 127 ~e~l~~aDvVi~a-----tG~~~lI~~e~l~~mk~GailvnvG 164 (542)
.+.++.+|+||.+ ...+.+++.+.++.||+|.+++.++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 3456789999974 2467899999999999999999987
No 94
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=98.26 E-value=7e-06 Score=85.92 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=77.5
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHh-CC-CEEEEEeCCchhhhhhhcCCceeeCHHHHh--cCCcEEEEcCC---CcccCC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKG-LG-CVIYITEIDPICALQACMDGFSVVKLNEVI--RTVDIVVTATG---NKNVVT 147 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~-~G-a~Viv~d~dp~r~~~A~~~G~~v~~l~e~l--~~aDvVi~atG---~~~lI~ 147 (542)
.+|++|+|+|.|+||+.+++.++. +| ++|+++++++.|+..+...+.... .++.. .++|++|+++| +...+.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~-~~~~~~~~g~d~viD~~G~~~~~~~~~ 240 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL-IDDIPEDLAVDHAFECVGGRGSQSAIN 240 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee-hhhhhhccCCcEEEECCCCCccHHHHH
Confidence 469999999999999999998885 55 589999999988877665554321 22222 25899999998 344554
Q ss_pred HHHHhccCCCeEEEeccCCC--cccChHhhcCCCcceee
Q psy4626 148 REHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK 184 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~~ 184 (542)
+.++.+++++.++.+|... .+++...+..+++++.+
T Consensus 241 -~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g 278 (341)
T cd08237 241 -QIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVG 278 (341)
T ss_pred -HHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEE
Confidence 7899999999999988643 34454444444444443
No 95
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=98.23 E-value=8.7e-06 Score=84.87 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=87.5
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHH-HhcCCcEEEEc
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNE-VIRTVDIVVTA 139 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e-~l~~aDvVi~a 139 (542)
..|+++.++ ...+|++|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|++ +++..+ .-...|+++++
T Consensus 153 ta~~~~~~~--~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~ 230 (329)
T TIGR02822 153 IGYRALLRA--SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILF 230 (329)
T ss_pred HHHHHHHhc--CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEEC
Confidence 346666543 34579999999999999999999999999999999999998888888986 333221 12457988888
Q ss_pred CCCcccCCHHHHhccCCCeEEEeccCC-C--cccChHhhcCCCccee
Q psy4626 140 TGNKNVVTREHMDKMKNGCVVCNMGHS-N--TEIDVNSLRTPDLTWE 183 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~GailvnvG~g-~--~eid~~aL~~~~l~v~ 183 (542)
+|....+. ..++.+++++.++.+|.. . ..++...+..+++++.
T Consensus 231 ~~~~~~~~-~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~ 276 (329)
T TIGR02822 231 APAGGLVP-PALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIR 276 (329)
T ss_pred CCcHHHHH-HHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEE
Confidence 87766664 789999999999999964 2 2345444433334333
No 96
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.20 E-value=9.9e-06 Score=75.08 Aligned_cols=91 Identities=23% Similarity=0.368 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-++++.-++ ..+..+.|++|+|+|-+. +|+.++..|...|++|++++.+. .++++.++.||+||.
T Consensus 12 ~~a~~~ll~-~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvs 77 (140)
T cd05212 12 AKAVKELLN-KEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVV 77 (140)
T ss_pred HHHHHHHHH-HcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEE
Confidence 344444433 346789999999999976 69999999999999999998432 256778899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
++|.+++++.+ .+|+|++++++|...
T Consensus 78 Atg~~~~i~~~---~ikpGa~Vidvg~~~ 103 (140)
T cd05212 78 GSPKPEKVPTE---WIKPGATVINCSPTK 103 (140)
T ss_pred ecCCCCccCHH---HcCCCCEEEEcCCCc
Confidence 99999999754 489999999988643
No 97
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=6.7e-06 Score=85.09 Aligned_cols=89 Identities=27% Similarity=0.330 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEe-CCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITE-IDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d-~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
-.+++.-+ +..+..+.||+|+|+| .|.+|+.+|..|...|+.|++|+ +++ +++++++.||+||
T Consensus 142 p~ai~~ll-~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~~~~ADIVI 206 (296)
T PRK14188 142 PLGCMMLL-RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAVCRRADILV 206 (296)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHHHhcCCEEE
Confidence 45555433 3345678999999999 89999999999999999999996 332 3577888999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.++.+... .+++|++++++|..
T Consensus 207 savg~~~~v~~~---~lk~GavVIDvGin 232 (296)
T PRK14188 207 AAVGRPEMVKGD---WIKPGATVIDVGIN 232 (296)
T ss_pred EecCChhhcchh---eecCCCEEEEcCCc
Confidence 999999988743 38999999999964
No 98
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.18 E-value=1e-05 Score=85.02 Aligned_cols=186 Identities=13% Similarity=0.180 Sum_probs=110.2
Q ss_pred HHhcCCcEEEEcCCCcccCCHHHHhccC--CCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecC
Q psy4626 128 EVIRTVDIVVTATGNKNVVTREHMDKMK--NGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAE 205 (542)
Q Consensus 128 e~l~~aDvVi~atG~~~lI~~e~l~~mk--~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~ 205 (542)
+.++++|+++.-..+ -++++.++.++ +-..+...|.|-+.+|++++.++++.+..+.. |
T Consensus 41 ~~~~~~d~ii~~~~~--~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~----~------------- 101 (330)
T PRK12480 41 DQLKDYDGVTTMQFG--KLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPS----Y------------- 101 (330)
T ss_pred HHhCCCCEEEEecCC--CCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCC----C-------------
Confidence 346899988764222 37888899997 45567788888778898888765554443211 0
Q ss_pred CCcccccCCCChhHHHh------hHHHHHHHHHHHHhcCCCCCCCCccccCChhhHHHHHHhcCCcccc----ccccccH
Q psy4626 206 GRLVNLSCSSLPSFVVS------ITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDA----HLTELSD 275 (542)
Q Consensus 206 GrLvnl~~~thp~~vmd------~sfa~q~la~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~ 275 (542)
++..+-+ +++..++.......+.+.-.|.... .+. ++...++|+ .|++-.+
T Consensus 102 ----------~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~--~~~-------~l~g~~VgIIG~G~IG~~vA 162 (330)
T PRK12480 102 ----------SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEI--MSK-------PVKNMTVAIIGTGRIGAATA 162 (330)
T ss_pred ----------ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCccccccc--Ccc-------ccCCCEEEEECCCHHHHHHH
Confidence 0111111 2222222211111222100232210 111 234445555 8888889
Q ss_pred HHHhhcCCC----CCCCCCCCccccCCeeeeehhhhcccCcEEEEcc----CCCCccCHhHHhcCCCCcEEEccCCCCcc
Q psy4626 276 EQAKYMGLN----KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHSNTE 347 (542)
Q Consensus 276 ~~a~~lg~~----e~~p~~a~ea~mdG~~v~~~~~a~~~~d~~~t~t----g~~~vi~~~~~~~mk~gail~n~gh~~~E 347 (542)
+.++.+|+. ...|....+. .. .+.+++++++.+|+|+++. .++++|+.+.|+.||+|++++|+||+.+
T Consensus 163 ~~L~~~G~~V~~~d~~~~~~~~~-~~--~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~- 238 (330)
T PRK12480 163 KIYAGFGATITAYDAYPNKDLDF-LT--YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV- 238 (330)
T ss_pred HHHHhCCCEEEEEeCChhHhhhh-hh--ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc-
Confidence 999999983 2223221111 01 1347899999999999933 3568999999999999999999999975
Q ss_pred cccccccC
Q psy4626 348 IDVNSLRT 355 (542)
Q Consensus 348 i~~~~l~~ 355 (542)
||-++|.+
T Consensus 239 vd~~aL~~ 246 (330)
T PRK12480 239 INTPDLIA 246 (330)
T ss_pred cCHHHHHH
Confidence 46665654
No 99
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.16 E-value=9.8e-06 Score=78.75 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=70.0
Q ss_pred ccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCcee---eC----HHHHhcCCcEEEEcCCCc
Q psy4626 73 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSV---VK----LNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 73 ~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v---~~----l~e~l~~aDvVi~atG~~ 143 (542)
..+.||+|+|+|-+. +|+-+|..|...||+|+++|++...... ........ .+ +.+.+++|||||.+.|.+
T Consensus 58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~ 137 (197)
T cd01079 58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP 137 (197)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence 368999999999986 6999999999999999999866543211 00011111 12 567789999999999999
Q ss_pred cc-CCHHHHhccCCCeEEEeccCC
Q psy4626 144 NV-VTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 144 ~l-I~~e~l~~mk~GailvnvG~g 166 (542)
++ ++.+ .+|+|++++++|..
T Consensus 138 ~~~i~~d---~ik~GavVIDVGi~ 158 (197)
T cd01079 138 NYKVPTE---LLKDGAICINFASI 158 (197)
T ss_pred CCccCHH---HcCCCcEEEEcCCC
Confidence 98 8854 47899999999965
No 100
>PLN02827 Alcohol dehydrogenase-like
Probab=98.14 E-value=5.8e-06 Score=87.94 Aligned_cols=92 Identities=25% Similarity=0.364 Sum_probs=74.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a 139 (542)
...|++|+|.|.|.+|..+++.++.+|+ .|++++.++.+...+...|++ +++. .+.+ .+.|+|+++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 4579999999999999999999999999 588889888888878778874 3321 1211 268999999
Q ss_pred CCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626 140 TGNKNVVTREHMDKMKNG-CVVCNMGHS 166 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~G-ailvnvG~g 166 (542)
+|....+. +.++.+++| +.++.+|..
T Consensus 271 ~G~~~~~~-~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 271 VGDTGIAT-TALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred CCChHHHH-HHHHhhccCCCEEEEECCc
Confidence 99866664 689999998 999988865
No 101
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.14 E-value=2.1e-06 Score=92.63 Aligned_cols=90 Identities=24% Similarity=0.314 Sum_probs=72.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEE------EeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC--Cccc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI------TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG--NKNV 145 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv------~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG--~~~l 145 (542)
.+.|++|+|+|||.+|+.-|.-++..|.+|++ +|.++.....|..+|+.+.+++++++.||+|+..+. ..+.
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~~ 112 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSD 112 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHHH
Confidence 57899999999999999989999999998883 343333334466789999899999999999999643 2445
Q ss_pred CCHHHHhccCCCeEEEec
Q psy4626 146 VTREHMDKMKNGCVVCNM 163 (542)
Q Consensus 146 I~~e~l~~mk~Gailvnv 163 (542)
+..+.+..||+|+.+.-.
T Consensus 113 v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 113 VVRAVQPLMKQGAALGYS 130 (487)
T ss_pred HHHHHHhhCCCCCEEEec
Confidence 557889999999999763
No 102
>KOG0022|consensus
Probab=98.13 E-value=3.6e-06 Score=86.51 Aligned_cols=93 Identities=24% Similarity=0.283 Sum_probs=77.8
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCHH-------HHh-----cCCcEEEE
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKLN-------EVI-----RTVDIVVT 138 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l-----~~aDvVi~ 138 (542)
..-+|++++|+|.|.+|+.+++-+|+.|| +++.+|++|.+...|...|+. .+++. |.+ .+.|+-++
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfE 268 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFE 268 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEE
Confidence 35689999999999999999999999999 999999999999999999985 45443 333 48999999
Q ss_pred cCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNG-CVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~G-ailvnvG~g 166 (542)
|+|+.+++. ++|...++| +.-+-+|..
T Consensus 269 c~G~~~~m~-~al~s~h~GwG~sv~iGv~ 296 (375)
T KOG0022|consen 269 CIGNVSTMR-AALESCHKGWGKSVVIGVA 296 (375)
T ss_pred ecCCHHHHH-HHHHHhhcCCCeEEEEEec
Confidence 999999885 789988887 665555643
No 103
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.13 E-value=1.2e-05 Score=82.58 Aligned_cols=90 Identities=27% Similarity=0.451 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-++++.-+ +..+..+.||+|+|+|-+. +|+.+|..|...|++|++++.. ..++.+.++.||+||.
T Consensus 142 p~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~-------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 142 PHGILELL-KEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK-------------TKNLAELTKQADILIV 207 (284)
T ss_pred HHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC-------------chhHHHHHHhCCEEEE
Confidence 44555433 3446789999999999975 6999999999999999999731 2356778899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|.+++++.+. +|+|++++++|..
T Consensus 208 AvG~p~~i~~~~---ik~gavVIDvGi~ 232 (284)
T PRK14190 208 AVGKPKLITADM---VKEGAVVIDVGVN 232 (284)
T ss_pred ecCCCCcCCHHH---cCCCCEEEEeecc
Confidence 999999998766 5899999999965
No 104
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=98.12 E-value=1.2e-05 Score=83.31 Aligned_cols=104 Identities=19% Similarity=0.272 Sum_probs=80.4
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCH-----H---HHh
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKL-----N---EVI 130 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l-----~---e~l 130 (542)
...|+++.+.. ..+|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|+. +++. + +..
T Consensus 150 ~ta~~~l~~~~--~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~ 227 (339)
T cd08239 150 GTAYHALRRVG--VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELT 227 (339)
T ss_pred HHHHHHHHhcC--CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHh
Confidence 34566665542 35699999999999999999999999998 99999988888777777764 2221 1 122
Q ss_pred --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.+.|++++++|....+. +.++.+++++.++.+|...
T Consensus 228 ~~~~~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~ 265 (339)
T cd08239 228 SGAGADVAIECSGNTAARR-LALEAVRPWGRLVLVGEGG 265 (339)
T ss_pred CCCCCCEEEECCCCHHHHH-HHHHHhhcCCEEEEEcCCC
Confidence 26899999999876553 6789999999999988643
No 105
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.11 E-value=1.8e-05 Score=82.30 Aligned_cols=91 Identities=15% Similarity=0.268 Sum_probs=70.9
Q ss_pred HhcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCccccCCee--eeehhhhcccCcEEEE----ccCCCCccCHh
Q psy4626 260 SLHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFS--VVKLNEVIRTVDIVVT----ATGNKNVVTRE 327 (542)
Q Consensus 260 ~l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~--v~~~~~a~~~~d~~~t----~tg~~~vi~~~ 327 (542)
++..+++|+ .|++-.+++++++|+. -.||...- +|.. ..+++|+++++|+|++ +..++++|+.+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~ 194 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSK 194 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHH
Confidence 466677777 8888889999999994 23443211 2332 3479999999999999 66789999999
Q ss_pred HHhcCCCCcEEEccCCCCcccccccccC
Q psy4626 328 HMDKMKNGCVVCNMGHSNTEIDVNSLRT 355 (542)
Q Consensus 328 ~~~~mk~gail~n~gh~~~Ei~~~~l~~ 355 (542)
.|++||+|++++|+|++... |-++|.+
T Consensus 195 ~l~~mk~ga~lIN~sRG~~v-d~~aL~~ 221 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVV-DKNDMLN 221 (303)
T ss_pred HHhcCCCCeEEEECCCcccc-CHHHHHH
Confidence 99999999999999999986 6555543
No 106
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.11 E-value=1.4e-05 Score=73.32 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=69.8
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcC---CceeeCHH---HHhcCCcEEEEcCCCc-c
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMD---GFSVVKLN---EVIRTVDIVVTATGNK-N 144 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~---G~~v~~l~---e~l~~aDvVi~atG~~-~ 144 (542)
.+.|++++|+|+|.+|+.++..|...|+ +|+++.+++.|+.. +... .+...+++ +.+..+|+||.||+.. .
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 5789999999999999999999999999 59999999887653 2222 23455544 4578999999998654 4
Q ss_pred cCCHHHHhccCCC-eEEEeccCC
Q psy4626 145 VVTREHMDKMKNG-CVVCNMGHS 166 (542)
Q Consensus 145 lI~~e~l~~mk~G-ailvnvG~g 166 (542)
.++.+.+...++. .+++..+..
T Consensus 89 ~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 89 IITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp SSTHHHHTTTCHHCSEEEES-SS
T ss_pred ccCHHHHHHHHhhhhceeccccC
Confidence 6777777766554 488888853
No 107
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=2.1e-05 Score=81.36 Aligned_cols=90 Identities=28% Similarity=0.416 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.- .+..+..+.||+|+|+|-+. +|+.++..|...||+|++++.. .-++.+.++.|||||.
T Consensus 142 p~aii~l-L~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 142 PAGVMRL-LRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASITREADILVA 207 (297)
T ss_pred HHHHHHH-HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence 3444443 34456789999999999976 6999999999999999999721 2356778899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|.+++++.+. +|+|++++++|..
T Consensus 208 AvGkp~~i~~~~---ik~gavVIDvGin 232 (297)
T PRK14186 208 AAGRPNLIGAEM---VKPGAVVVDVGIH 232 (297)
T ss_pred ccCCcCccCHHH---cCCCCEEEEeccc
Confidence 999999998644 7899999999965
No 108
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.11 E-value=1.8e-05 Score=82.92 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=80.8
Q ss_pred HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH--------HHHh----
Q psy4626 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL--------NEVI---- 130 (542)
Q Consensus 64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l--------~e~l---- 130 (542)
++++.+. ....|++|+|.|.|++|..+++.++.+|++|++++.++.+...+...|++ +++. .+.+
T Consensus 156 ~~a~~~~--~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 156 YQAAVQA--GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred HHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhc
Confidence 4454442 24579999999999999999999999999999999999888878777864 2221 1111
Q ss_pred --cCCc----EEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhh
Q psy4626 131 --RTVD----IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSL 175 (542)
Q Consensus 131 --~~aD----vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL 175 (542)
.+.| ++++|+|....++ ..++.+++|+.++.+|... ..++...+
T Consensus 234 ~~~g~d~~~d~v~d~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~ 285 (349)
T TIGR03201 234 KARGLRSTGWKIFECSGSKPGQE-SALSLLSHGGTLVVVGYTMAKTEYRLSNL 285 (349)
T ss_pred ccCCCCCCcCEEEECCCChHHHH-HHHHHHhcCCeEEEECcCCCCcccCHHHH
Confidence 2444 8999999876663 6789999999999999764 23444433
No 109
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=1.5e-05 Score=81.71 Aligned_cols=90 Identities=23% Similarity=0.377 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.- .+..+..+.||+|+|+|-+ -+|+.+|..|...||.|++++.. .-++.+.++.||+||.
T Consensus 141 p~avi~l-L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~-------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 141 PLGVMEL-LEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF-------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred HHHHHHH-HHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CcCHHHHHhhCCEEEE
Confidence 3444443 3444678999999999998 68999999999999999999621 1346677899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|.+++++.+. +|+|++++++|..
T Consensus 207 AvGkp~~i~~~~---vk~gavvIDvGin 231 (281)
T PRK14183 207 GVGKPNLITEDM---VKEGAIVIDIGIN 231 (281)
T ss_pred ecCcccccCHHH---cCCCcEEEEeecc
Confidence 999999998654 6899999999954
No 110
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=1.6e-05 Score=81.62 Aligned_cols=91 Identities=25% Similarity=0.401 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-++++.-+ +..+..+.||+|+|+|-+. +|+.+|..|...|++|++++.. ..++.+.++.|||||
T Consensus 139 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~~~~ADIvI 204 (282)
T PRK14169 139 TPYGIMALL-DAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK-------------TRNLKQLTKEADILV 204 (282)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEE
Confidence 345555433 4446789999999999976 6999999999999999999731 235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+ .+|+|++++++|..
T Consensus 205 ~AvG~p~~i~~~---~vk~GavVIDvGin 230 (282)
T PRK14169 205 VAVGVPHFIGAD---AVKPGAVVIDVGIS 230 (282)
T ss_pred EccCCcCccCHH---HcCCCcEEEEeecc
Confidence 999999999865 47899999999954
No 111
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.10 E-value=1.2e-05 Score=82.43 Aligned_cols=90 Identities=30% Similarity=0.434 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.- .+..+..+.||+|+|+|-+. +|+-++..|...|++|++++.. ..++.+.++.|||||.
T Consensus 141 p~avi~l-L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 141 PAGIIEL-IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------TKDLPQVAKEADILVV 206 (284)
T ss_pred HHHHHHH-HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence 3444443 34456789999999999986 6999999999999999999731 2356788899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|.+++++.+. +|+|++++++|..
T Consensus 207 AvG~~~~i~~~~---vk~GavVIDvGin 231 (284)
T PRK14170 207 ATGLAKFVKKDY---IKPGAIVIDVGMD 231 (284)
T ss_pred ecCCcCccCHHH---cCCCCEEEEccCc
Confidence 999999998654 6899999999965
No 112
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=98.09 E-value=6.4e-06 Score=73.53 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eC-----HH----HHh--cCCcEEEEcCCCcccCCHHHHhcc
Q psy4626 87 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-----LN----EVI--RTVDIVVTATGNKNVVTREHMDKM 154 (542)
Q Consensus 87 ~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~-----l~----e~l--~~aDvVi~atG~~~lI~~e~l~~m 154 (542)
+||..+++.++.+|++|++++.++.|...+...|+.. .+ +. +.. .++|+||+|+|+...++ ..++.+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~-~~~~~l 79 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQ-EAIKLL 79 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHH-HHHHHE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHH-HHHHHh
Confidence 5899999999999999999999999998888888753 22 22 222 36999999999887775 789999
Q ss_pred CCCeEEEeccCCC---cccChHhhcCCCcceeee
Q psy4626 155 KNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKV 185 (542)
Q Consensus 155 k~GailvnvG~g~---~eid~~aL~~~~l~v~~~ 185 (542)
++++.++.+|... ..++...+..+++++.++
T Consensus 80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~ 113 (130)
T PF00107_consen 80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGS 113 (130)
T ss_dssp EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEE
T ss_pred ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEE
Confidence 9999999999875 344555555555555443
No 113
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=1.7e-05 Score=81.46 Aligned_cols=91 Identities=22% Similarity=0.433 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-++++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||.|++++.. +-++.+.++.|||+|
T Consensus 140 Tp~avi~lL-~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~-------------T~nl~~~~~~ADIvI 205 (282)
T PRK14166 140 TPLGVMKLL-KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK-------------TKDLSLYTRQADLII 205 (282)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence 345555533 3446789999999999976 6999999999999999999731 235777889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+ .+|+|++++++|..
T Consensus 206 sAvGkp~~i~~~---~vk~GavVIDvGin 231 (282)
T PRK14166 206 VAAGCVNLLRSD---MVKEGVIVVDVGIN 231 (282)
T ss_pred EcCCCcCccCHH---HcCCCCEEEEeccc
Confidence 999999999865 47899999999953
No 114
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.09 E-value=3.4e-05 Score=80.41 Aligned_cols=92 Identities=26% Similarity=0.330 Sum_probs=69.1
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhcCCceeeCH---HHHhcCCcEEEEcCCCccc--CC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKL---NEVIRTVDIVVTATGNKNV--VT 147 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~~G~~v~~l---~e~l~~aDvVi~atG~~~l--I~ 147 (542)
+.|++|+|+|+|.+|+.+++.++..|+ +|+++++++.++. .+...|..+.+. .+.+..+|+||+||+.++. +-
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~ 255 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV 255 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence 679999999999999999999998875 8999999988753 455556655543 4567889999999987665 11
Q ss_pred HHHHhcc-CCCeEEEeccCC
Q psy4626 148 REHMDKM-KNGCVVCNMGHS 166 (542)
Q Consensus 148 ~e~l~~m-k~GailvnvG~g 166 (542)
.+.++.. +++.++++.+..
T Consensus 256 ~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 256 ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred HHHHhhCCCCCeEEEEeCCC
Confidence 2333333 356788888854
No 115
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.09 E-value=1.4e-05 Score=83.59 Aligned_cols=91 Identities=24% Similarity=0.367 Sum_probs=67.7
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC-chhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCc---ccCCHHH
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID-PICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREH 150 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d-p~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~---~lI~~e~ 150 (542)
+.|++|+|||+|.+|..+|+.|+..|.+|++++.. +.+...+...|+.+.+..++++.+|+|+.+.... ..+..+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei 80 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEI 80 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHH
Confidence 46899999999999999999999999998876543 3344445567888778888889999999987533 1222334
Q ss_pred HhccCCCeEEEeccCC
Q psy4626 151 MDKMKNGCVVCNMGHS 166 (542)
Q Consensus 151 l~~mk~GailvnvG~g 166 (542)
...++++. ++.+++|
T Consensus 81 ~~~l~~g~-iVs~aaG 95 (314)
T TIGR00465 81 QPLLKEGK-TLGFSHG 95 (314)
T ss_pred HhhCCCCc-EEEEeCC
Confidence 56677776 5666655
No 116
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.08 E-value=1.3e-05 Score=86.80 Aligned_cols=92 Identities=27% Similarity=0.341 Sum_probs=71.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhh-hhhcCCceeeC---HHHHhcCCcEEEEcCCCc-ccCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICAL-QACMDGFSVVK---LNEVIRTVDIVVTATGNK-NVVT 147 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~-~A~~~G~~v~~---l~e~l~~aDvVi~atG~~-~lI~ 147 (542)
.+.|++|+|+|+|.+|+.+++.|+..| .+|+++++++.++. .+...|....+ +.+.+.++|+||+|||.+ ++++
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~ 256 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVS 256 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEc
Confidence 367899999999999999999999999 59999999988754 34444544443 446678999999999754 5678
Q ss_pred HHHHhccC----CCeEEEeccC
Q psy4626 148 REHMDKMK----NGCVVCNMGH 165 (542)
Q Consensus 148 ~e~l~~mk----~GailvnvG~ 165 (542)
++.+..+. ...++++.+.
T Consensus 257 ~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 257 KEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred HHHHHHHHhcCCCCeEEEEeCC
Confidence 77777652 2357888874
No 117
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=1.4e-05 Score=82.19 Aligned_cols=90 Identities=33% Similarity=0.448 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.- .+..+..+.||+++|+|. |.+|+.+|..|...|++|++|+.. ..++.+.++.||+||.
T Consensus 142 p~avi~l-L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 142 PAGIMEM-FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVV 207 (284)
T ss_pred HHHHHHH-HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEE
Confidence 3444443 344467899999999999 999999999999999999999411 1257788899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|.++.++.+ .+|+|++++++|..
T Consensus 208 avg~~~~v~~~---~ik~GavVIDvgin 232 (284)
T PRK14179 208 AIGRGHFVTKE---FVKEGAVVIDVGMN 232 (284)
T ss_pred ecCccccCCHH---HccCCcEEEEecce
Confidence 99999999854 38999999999954
No 118
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.08 E-value=1.7e-05 Score=81.66 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.+++.- .+..+..+.||+|+|+|-+. +|+.++..|...||+|++++. ...++.+.++.|||||
T Consensus 142 Tp~av~~l-L~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs-------------~T~~L~~~~~~ADIvV 207 (288)
T PRK14171 142 TALGCLAV-IKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHS-------------KTHNLSSITSKADIVV 207 (288)
T ss_pred CHHHHHHH-HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC-------------CCCCHHHHHhhCCEEE
Confidence 34445443 34456789999999999976 699999999999999999973 1235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.+.|.+++++.+. +|+|++++++|..
T Consensus 208 ~AvGkp~~i~~~~---vk~GavVIDvGin 233 (288)
T PRK14171 208 AAIGSPLKLTAEY---FNPESIVIDVGIN 233 (288)
T ss_pred EccCCCCccCHHH---cCCCCEEEEeecc
Confidence 9999999998654 7899999999943
No 119
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=98.07 E-value=1.8e-05 Score=83.24 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=74.8
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e----~l--~~aDvVi~at 140 (542)
..+|++|+|.|.|++|..+++.++.+|+ +|++++.++.+...+...|.+ +++. .+ .. .++|++++++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 3579999999999999999999999999 599999999888888777864 3321 11 12 3689999999
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|....++ +.++.++++++++.+|..
T Consensus 254 g~~~~~~-~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 254 GRPETYK-QAFYARDLAGTVVLVGVP 278 (358)
T ss_pred CCHHHHH-HHHHHhccCCEEEEECCC
Confidence 9766664 688999999999999865
No 120
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=1.9e-05 Score=81.06 Aligned_cols=90 Identities=20% Similarity=0.374 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++. +.+..+..+.||+|+|+|-+. +|+.++..|...||.|++++.. .-++.+.++.||+||.
T Consensus 143 p~avi~-ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~-------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 143 PYGMVL-LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK-------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred HHHHHH-HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence 344544 334456789999999999975 7999999999999999999731 2356778899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|.+++++.+. +|+|++++++|..
T Consensus 209 AvGk~~~i~~~~---ik~gavVIDvGin 233 (284)
T PRK14177 209 AVGKPEFIKADW---ISEGAVLLDAGYN 233 (284)
T ss_pred eCCCcCccCHHH---cCCCCEEEEecCc
Confidence 999999998644 7899999999964
No 121
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=2e-05 Score=80.76 Aligned_cols=90 Identities=31% Similarity=0.479 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++.. .-++.+.+++||+||.
T Consensus 142 p~av~~lL-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 142 PNSVITLI-KSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------TKNLKEVCKKADILVV 207 (278)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEE
Confidence 34444433 3456789999999999975 7999999999999999999731 2356778899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|.+++++.+. +|+|++++++|..
T Consensus 208 AvGkp~~i~~~~---ik~gavVIDvGin 232 (278)
T PRK14172 208 AIGRPKFIDEEY---VKEGAIVIDVGTS 232 (278)
T ss_pred cCCCcCccCHHH---cCCCcEEEEeecc
Confidence 999999998654 7899999999954
No 122
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.07 E-value=1.8e-05 Score=85.83 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=71.3
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhcCCceeeCH---HHHhcCCcEEEEcCCCc-ccCCH
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKL---NEVIRTVDIVVTATGNK-NVVTR 148 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~~G~~v~~l---~e~l~~aDvVi~atG~~-~lI~~ 148 (542)
+.|++|+|+|+|.+|+.+++.|+..|+ +|+++++++.++. .+...|..+.+. .+.+.++|+||+|||.+ .+++.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~~ 259 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIGK 259 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEcH
Confidence 689999999999999999999999998 8999999988764 444555444443 45678999999999865 56777
Q ss_pred HHHhcc-----CCCeEEEeccC
Q psy4626 149 EHMDKM-----KNGCVVCNMGH 165 (542)
Q Consensus 149 e~l~~m-----k~GailvnvG~ 165 (542)
+.++.+ .++.++++.+.
T Consensus 260 ~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 260 GMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred HHHHHHHhhccCCCeEEEEeCC
Confidence 777654 24578888874
No 123
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=1.4e-05 Score=81.83 Aligned_cols=90 Identities=24% Similarity=0.422 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.-+ +..+..+.|++|+|+|.+ .+|+.+|..+..+|++|++++.+. -++.+.++.||+||.
T Consensus 136 p~av~~ll-~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 136 PNGIMTLL-HEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVS 201 (279)
T ss_pred HHHHHHHH-HHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEE
Confidence 34455433 345678999999999999 789999999999999999998432 346778899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|.+++++++. +|+|++++++|..
T Consensus 202 Avgk~~lv~~~~---vk~GavVIDVgi~ 226 (279)
T PRK14178 202 AAGKAGFITPDM---VKPGATVIDVGIN 226 (279)
T ss_pred CCCcccccCHHH---cCCCcEEEEeecc
Confidence 999889998766 5999999999954
No 124
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.06 E-value=3.4e-05 Score=65.09 Aligned_cols=67 Identities=37% Similarity=0.506 Sum_probs=58.6
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH 150 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~ 150 (542)
+..+.+++++|+|+|.+|+.++..+... +.+|.++|+ |++|.|++..+.+..++
T Consensus 18 ~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~~~~~~~~~ 72 (86)
T cd05191 18 NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPAGVPVLEEA 72 (86)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCCCCCchHHH
Confidence 4568899999999999999999999998 568999974 99999999888887667
Q ss_pred HhccCCCeEEEec
Q psy4626 151 MDKMKNGCVVCNM 163 (542)
Q Consensus 151 l~~mk~Gailvnv 163 (542)
++.++++..+++.
T Consensus 73 ~~~~~~~~~v~~~ 85 (86)
T cd05191 73 TAKINEGAVVIDL 85 (86)
T ss_pred HHhcCCCCEEEec
Confidence 8899999888765
No 125
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=2e-05 Score=81.36 Aligned_cols=91 Identities=23% Similarity=0.363 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.++++-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++.. ..++.+.+++|||||
T Consensus 143 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~-------------T~~l~~~~~~ADIvV 208 (294)
T PRK14187 143 TPKGCLYLI-KTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSA-------------TRDLADYCSKADILV 208 (294)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence 445555533 3346789999999999986 6999999999999999999731 235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+. +|+|++++++|..
T Consensus 209 sAvGkp~~i~~~~---ik~gaiVIDVGin 234 (294)
T PRK14187 209 AAVGIPNFVKYSW---IKKGAIVIDVGIN 234 (294)
T ss_pred EccCCcCccCHHH---cCCCCEEEEeccc
Confidence 9999999998654 6899999999954
No 126
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=98.06 E-value=2.1e-05 Score=81.37 Aligned_cols=91 Identities=20% Similarity=0.365 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.++++-+ +..+..+.||+|+|+|-+. +|+-++..|...||+|++++.. +-++++.++.|||||
T Consensus 150 Tp~avi~lL-~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv 215 (299)
T PLN02516 150 TPKGCLELL-SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVI 215 (299)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence 345555533 3446789999999999976 6999999999999999999731 235778889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+. +|+|++++++|..
T Consensus 216 ~AvGk~~~i~~~~---vk~gavVIDvGin 241 (299)
T PLN02516 216 AAAGQAMMIKGDW---IKPGAAVIDVGTN 241 (299)
T ss_pred EcCCCcCccCHHH---cCCCCEEEEeecc
Confidence 9999999998644 7899999999954
No 127
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.05 E-value=1.2e-05 Score=82.58 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=70.4
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccC-----C-HHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVV-----T-REHM 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI-----~-~e~l 151 (542)
+|+|||+|.+|..+|..+...|.+|++||+++.+...+...|.. ..+..++++++|+||.|..+...+ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999999877666666654 446778889999999987543222 1 1235
Q ss_pred hccCCCeEEEeccCCC
Q psy4626 152 DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 152 ~~mk~GailvnvG~g~ 167 (542)
..+++|.+++|++...
T Consensus 81 ~~~~~g~iivd~st~~ 96 (291)
T TIGR01505 81 EGAKPGKTLVDMSSIS 96 (291)
T ss_pred hcCCCCCEEEECCCCC
Confidence 6779999999988764
No 128
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=2.3e-05 Score=80.43 Aligned_cols=91 Identities=24% Similarity=0.347 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++.. .-++.+.++.||++|
T Consensus 140 Tp~avi~ll-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~-------------T~nl~~~~~~ADIvI 205 (282)
T PRK14182 140 TPAGVMRML-DEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR-------------TADLAGEVGRADILV 205 (282)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence 345555533 4446789999999999986 6999999999999999999731 235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+. +|+|++++++|..
T Consensus 206 ~AvGk~~~i~~~~---ik~gaiVIDvGin 231 (282)
T PRK14182 206 AAIGKAELVKGAW---VKEGAVVIDVGMN 231 (282)
T ss_pred EecCCcCccCHHH---cCCCCEEEEeece
Confidence 9999999998654 6899999999954
No 129
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=98.04 E-value=2.1e-05 Score=83.16 Aligned_cols=102 Identities=24% Similarity=0.256 Sum_probs=77.6
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh---
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI--- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l--- 130 (542)
.|+++.+.. ....|++|+|.|.|+||..+++.++.+|+ +|++++.++.+...+...|++ +++. .+.+
T Consensus 173 a~~a~~~~~-~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 173 GIGAVLNTA-KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEI 251 (368)
T ss_pred HHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHH
Confidence 455543322 24579999999999999999999999999 899999999988888777864 2321 1211
Q ss_pred --cCCcEEEEcCCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626 131 --RTVDIVVTATGNKNVVTREHMDKMKNG-CVVCNMGHS 166 (542)
Q Consensus 131 --~~aDvVi~atG~~~lI~~e~l~~mk~G-ailvnvG~g 166 (542)
.++|++++++|....+. +.++.++++ +.++.+|..
T Consensus 252 ~~~g~d~vid~~G~~~~~~-~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 252 TDGGVDYSFECIGNVNVMR-AALECCHKGWGESIIIGVA 289 (368)
T ss_pred hCCCCCEEEECCCCHHHHH-HHHHHhhcCCCeEEEEecc
Confidence 26899999999766664 688999876 898888864
No 130
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=2.4e-05 Score=80.27 Aligned_cols=91 Identities=25% Similarity=0.355 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|...||+|++++.. .-++.+.++.||+||
T Consensus 141 Tp~aii~lL-~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~-------------T~dl~~~~k~ADIvI 206 (282)
T PRK14180 141 TPKGIMTML-REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF-------------TTDLKSHTTKADILI 206 (282)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC-------------CCCHHHHhhhcCEEE
Confidence 345555533 3346789999999999975 7999999999999999999731 235667789999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+ .+|+|++++++|..
T Consensus 207 sAvGkp~~i~~~---~vk~gavVIDvGin 232 (282)
T PRK14180 207 VAVGKPNFITAD---MVKEGAVVIDVGIN 232 (282)
T ss_pred EccCCcCcCCHH---HcCCCcEEEEeccc
Confidence 999999999864 47899999999963
No 131
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=98.04 E-value=2e-05 Score=84.57 Aligned_cols=101 Identities=24% Similarity=0.291 Sum_probs=78.1
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceeeC------HHH----Hh-
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVVK------LNE----VI- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~~------l~e----~l- 130 (542)
.++++.+. ....|++|+|.|.|+||+.+++.++.+|++ |++.|.++.|...+...|+..+. ..+ ..
T Consensus 174 a~~a~~~~--~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~ 251 (393)
T TIGR02819 174 GYHGAVTA--GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILG 251 (393)
T ss_pred HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcC
Confidence 45555543 345799999999999999999999999997 45568888888888888875331 212 12
Q ss_pred -cCCcEEEEcCCCc--------------ccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 -RTVDIVVTATGNK--------------NVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 -~~aDvVi~atG~~--------------~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|++++++|.+ ..+ .+.++.+++|+.++.+|.+
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHH-HHHHHHhhCCCEEEEeeec
Confidence 3689999999976 256 4789999999999999986
No 132
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=2.5e-05 Score=80.41 Aligned_cols=91 Identities=25% Similarity=0.423 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-++++.-+ +..+..+.||+|+|+|-+. +|+.++..|...|++|++++.. +-++.+.++.|||||
T Consensus 138 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~-------------T~~l~~~~~~ADIvI 203 (287)
T PRK14173 138 TPAGVVRLL-KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK-------------TQDLPAVTRRADVLV 203 (287)
T ss_pred CHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence 344455433 3456789999999999975 7999999999999999999731 235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+. +|+|++++++|..
T Consensus 204 sAvGkp~~i~~~~---vk~GavVIDVGin 229 (287)
T PRK14173 204 VAVGRPHLITPEM---VRPGAVVVDVGIN 229 (287)
T ss_pred EecCCcCccCHHH---cCCCCEEEEccCc
Confidence 9999999998655 6899999999954
No 133
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=98.03 E-value=6.6e-05 Score=79.10 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=81.6
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCce-eeC------HHHHhcCCc
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFS-VVK------LNEVIRTVD 134 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~-v~~------l~e~l~~aD 134 (542)
.++++.+. +....|++|+|.|.|++|..+++.++.+|++|++++.++.+...+ ...|++ ++. +.+...+.|
T Consensus 168 a~~al~~~-~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D 246 (357)
T PLN02514 168 VYSPLSHF-GLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLD 246 (357)
T ss_pred HHHHHHHc-ccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCc
Confidence 35555433 233579999999999999999999999999999988777665444 346664 221 112234689
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCcce
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTW 182 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v 182 (542)
++++++|....+. +.++.+++++.++.+|... .+++...+..+++++
T Consensus 247 ~vid~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i 295 (357)
T PLN02514 247 YIIDTVPVFHPLE-PYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVI 295 (357)
T ss_pred EEEECCCchHHHH-HHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEE
Confidence 9999998765554 6899999999999998653 244444443333333
No 134
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.03 E-value=3.2e-05 Score=71.31 Aligned_cols=102 Identities=22% Similarity=0.243 Sum_probs=72.0
Q ss_pred HHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhh-hhcCCc-----eeeCHHHHhcCCcEEE
Q psy4626 65 DSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQ-ACMDGF-----SVVKLNEVIRTVDIVV 137 (542)
Q Consensus 65 ~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~-A~~~G~-----~v~~l~e~l~~aDvVi 137 (542)
.++++. +....+++++|+|+|.+|..+++.++..| .+|+++++++.+... +...+. ...+.++++.++|+||
T Consensus 8 ~a~~~~-~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi 86 (155)
T cd01065 8 RALEEA-GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLII 86 (155)
T ss_pred HHHHhh-CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEE
Confidence 344443 34467899999999999999999999986 689999998876543 222232 3445667788999999
Q ss_pred EcCCCccc-CCHH--HHhccCCCeEEEeccCCC
Q psy4626 138 TATGNKNV-VTRE--HMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 138 ~atG~~~l-I~~e--~l~~mk~GailvnvG~g~ 167 (542)
.|++.... +... ....++++..+++++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~ 119 (155)
T cd01065 87 NTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNP 119 (155)
T ss_pred eCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCC
Confidence 99865332 1111 123468999999988654
No 135
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=2.8e-05 Score=79.97 Aligned_cols=91 Identities=23% Similarity=0.407 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTV 133 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a 133 (542)
|-++++.-+ +..+..+.||+|+|+|-+. +|+.++..|... ++.|++++.. ..++.+.++.|
T Consensus 136 Tp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~-------------T~~l~~~~~~A 201 (287)
T PRK14181 136 TPAGIIELL-KYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ-------------SENLTEILKTA 201 (287)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC-------------CCCHHHHHhhC
Confidence 345555533 3456789999999999976 699999999988 8999999731 23577788999
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
||||.++|.+++++.+. +|+|++++++|..
T Consensus 202 DIvV~AvG~p~~i~~~~---ik~GavVIDvGin 231 (287)
T PRK14181 202 DIIIAAIGVPLFIKEEM---IAEKAVIVDVGTS 231 (287)
T ss_pred CEEEEccCCcCccCHHH---cCCCCEEEEeccc
Confidence 99999999999998654 7899999999954
No 136
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.00 E-value=2.2e-05 Score=82.34 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEE
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVT 138 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~ 138 (542)
-.+++.-+ +..+..+.||+|+|+|-+. +|+-+|..|...||+|++++.. .-++.+.++.|||||.
T Consensus 198 p~avi~LL-~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~-------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 198 PKGCVELL-IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAF-------------TKDPEQITRKADIVIA 263 (345)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCC-------------CCCHHHHHhhCCEEEE
Confidence 34455433 3346789999999999976 6999999999999999999731 2356778899999999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|.+++++.+. +|+|+++|++|..
T Consensus 264 AvGkp~~v~~d~---vk~GavVIDVGin 288 (345)
T PLN02897 264 AAGIPNLVRGSW---LKPGAVVIDVGTT 288 (345)
T ss_pred ccCCcCccCHHH---cCCCCEEEEcccc
Confidence 999999998654 7899999999954
No 137
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=98.00 E-value=2.2e-05 Score=82.70 Aligned_cols=91 Identities=26% Similarity=0.401 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVV 137 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi 137 (542)
|-.++++-+ +..+..+.||+|+|+|-+. +|+-++..|...||.|++++.. .-++.+.+++|||||
T Consensus 214 Tp~avielL-~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------T~nl~~~~r~ADIVI 279 (364)
T PLN02616 214 TPKGCIELL-HRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITREADIII 279 (364)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------CCCHHHHHhhCCEEE
Confidence 345555533 3346789999999999976 6999999999999999999731 235677889999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.++|.+++++.+. +|+|+++|++|..
T Consensus 280 sAvGkp~~i~~d~---vK~GAvVIDVGIn 305 (364)
T PLN02616 280 SAVGQPNMVRGSW---IKPGAVVIDVGIN 305 (364)
T ss_pred EcCCCcCcCCHHH---cCCCCEEEecccc
Confidence 9999999998654 7899999999953
No 138
>PLN02740 Alcohol dehydrogenase-like
Probab=98.00 E-value=1.7e-05 Score=84.23 Aligned_cols=93 Identities=23% Similarity=0.339 Sum_probs=75.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-------HHHHh-----cCCcEEEEc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-------LNEVI-----RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-------l~e~l-----~~aDvVi~a 139 (542)
...|++|+|+|.|+||..+++.++.+|+ +|++++.++.|...+...|++ +++ ..+.+ .++|+++++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 4579999999999999999999999999 699999999998888888875 332 21222 259999999
Q ss_pred CCCcccCCHHHHhccCCC-eEEEeccCCC
Q psy4626 140 TGNKNVVTREHMDKMKNG-CVVCNMGHSN 167 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~G-ailvnvG~g~ 167 (542)
+|....+. +.+..+++| +.++.+|...
T Consensus 276 ~G~~~~~~-~a~~~~~~g~G~~v~~G~~~ 303 (381)
T PLN02740 276 AGNVEVLR-EAFLSTHDGWGLTVLLGIHP 303 (381)
T ss_pred CCChHHHH-HHHHhhhcCCCEEEEEccCC
Confidence 99876774 788889886 8888888653
No 139
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.98 E-value=1.8e-05 Score=81.42 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=72.7
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC------HH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------RE 149 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~------~e 149 (542)
.+|++||.|.+|..+|+.|...|..|.+||++|.+ ...+...|.. ..++.++...+|+||++..+...+. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 37999999999999999999999999999999998 4445565776 4567788999999999876443332 23
Q ss_pred HHhccCCCeEEEeccCCC
Q psy4626 150 HMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 150 ~l~~mk~GailvnvG~g~ 167 (542)
.++.+|+|+++|+.+.-+
T Consensus 81 ~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 81 LLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred hhhcCCCCCEEEECCCCC
Confidence 567789999999998764
No 140
>KOG0069|consensus
Probab=97.98 E-value=1.1e-05 Score=84.44 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=108.5
Q ss_pred CcEEEEcCCCcccCCHHHHhcc-CCCeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccc
Q psy4626 133 VDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNL 211 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl 211 (542)
+-+++.+....... .+.+..+ ++...++++|.|-+.+|+++++.+++++.++......
T Consensus 61 ~~~~~~~~~~~~~~-~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~-------------------- 119 (336)
T KOG0069|consen 61 SRIAISVPFTGAFT-KELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTD-------------------- 119 (336)
T ss_pred eeeeeecccchHHh-HhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchH--------------------
Confidence 33444444444443 4566666 6667788999999999999999888877655321100
Q ss_pred cCCCChhHHHhhHHHHHHHHHHHHhcCC-----CCCCCCccccCChhhHHHHH-HhcCCcccc----ccccccHHHHhhc
Q psy4626 212 SCSSLPSFVVSITACTQALALIELFNAP-----SGRYKSDVYLLPKKMDEYVA-SLHLPTFDA----HLTELSDEQAKYM 281 (542)
Q Consensus 212 ~~~thp~~vmd~sfa~q~la~~~L~~~~-----~~~~~~gv~~lp~~~d~~VA-~l~L~~lg~----~i~~lt~~~a~~l 281 (542)
.. -|...+. .|+....+.++ +++|...+. .... .+..++.|+ +|++..++|.+++
T Consensus 120 ~v-------Ad~~~~l-il~~~R~~~~g~~~~~~g~w~~~~~-------~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 120 DV-------ADLAVSL-LLALLRRFSEGNEMVRNGGWGWAGG-------WPLGYDLEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred HH-------HHHHHHH-HHHHHhhhhhhhhhhhcCCccccCC-------ccccccccCCEEEEecCcHHHHHHHHhhhhc
Confidence 00 0111111 11112211111 034411111 1111 345567777 9999999999999
Q ss_pred CCCCCC----CCCCCccccCCeeeeehhhhcccCcEEEE----ccCCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626 282 GLNKAG----PFKPSYYSMDGFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHMDKMKNGCVVCNMGHSNT 346 (542)
Q Consensus 282 g~~e~~----p~~a~ea~mdG~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~~~mk~gail~n~gh~~~ 346 (542)
|..-.. +.+.-++.--+-+..++++.++++|++|. +.-+.++|+++-|++||+|++|+|+|++.+
T Consensus 185 g~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~i 257 (336)
T KOG0069|consen 185 GCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAI 257 (336)
T ss_pred cceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccccc
Confidence 952111 22222221122225689999999999998 778899999999999999999999999976
No 141
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.98 E-value=2.7e-05 Score=80.03 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=71.1
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcc----cCC--HHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVT--REH 150 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~----lI~--~e~ 150 (542)
.+|+|+|+|.+|..+|..+...|.+|++||+++.+.......|... .+.+++++++|+||.|..... ++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 4799999999999999999999999999999998766555666654 467788899999999875322 221 123
Q ss_pred HhccCCCeEEEeccCCC
Q psy4626 151 MDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 151 l~~mk~GailvnvG~g~ 167 (542)
+..+++|.++++++...
T Consensus 83 ~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIA 99 (296)
T ss_pred hhcCCCCcEEEECCCCC
Confidence 56789999999998875
No 142
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.96 E-value=3.9e-05 Score=78.85 Aligned_cols=91 Identities=30% Similarity=0.417 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHh--CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcE
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKG--LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~--~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDv 135 (542)
|-++++.-+ +..+..+.||+++|+|-+. +|+.++..|.. .|++|++++.. ..++.+.++.||+
T Consensus 141 Tp~av~~ll-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~~k~ADI 206 (284)
T PRK14193 141 TPRGIVHLL-RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAHTRRADI 206 (284)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHHHHhCCE
Confidence 345555533 3446789999999999975 79999999987 79999999732 2357788899999
Q ss_pred EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
||.++|.+++++.+. +|+|++++++|..
T Consensus 207 vV~AvGkp~~i~~~~---ik~GavVIDvGin 234 (284)
T PRK14193 207 IVAAAGVAHLVTADM---VKPGAAVLDVGVS 234 (284)
T ss_pred EEEecCCcCccCHHH---cCCCCEEEEcccc
Confidence 999999999998654 7899999999954
No 143
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=4.1e-05 Score=78.96 Aligned_cols=91 Identities=24% Similarity=0.419 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTV 133 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a 133 (542)
|-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|... +|.|++++.. .-++.+.+++|
T Consensus 140 Tp~av~~lL-~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------T~nl~~~~~~A 205 (293)
T PRK14185 140 TPNGILELL-KRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR-------------SKNLKKECLEA 205 (293)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC-------------CCCHHHHHhhC
Confidence 345555533 3446789999999999976 699999999877 7999999732 23567788999
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
||||.++|.+++++.+ .+|+|++++++|..
T Consensus 206 DIvIsAvGkp~~i~~~---~vk~gavVIDvGin 235 (293)
T PRK14185 206 DIIIAALGQPEFVKAD---MVKEGAVVIDVGTT 235 (293)
T ss_pred CEEEEccCCcCccCHH---HcCCCCEEEEecCc
Confidence 9999999999999854 47999999999953
No 144
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.94 E-value=2.6e-05 Score=79.58 Aligned_cols=89 Identities=27% Similarity=0.417 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEc
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 139 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~a 139 (542)
.+++.-+ +..+..+.|++++|+|-++ +|+.+++.|...++.|++++.. .-++.+.++.||++|.+
T Consensus 141 ~gi~~ll-~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~-------------T~~l~~~~k~ADIvv~A 206 (283)
T COG0190 141 AGIMTLL-EEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSR-------------TKDLASITKNADIVVVA 206 (283)
T ss_pred HHHHHHH-HHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCC-------------CCCHHHHhhhCCEEEEe
Confidence 4444433 4446789999999999987 5899999999999999999832 23566778999999999
Q ss_pred CCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 140 TGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.|.++++++ +++|+|++++.+|..
T Consensus 207 vG~p~~i~~---d~vk~gavVIDVGin 230 (283)
T COG0190 207 VGKPHFIKA---DMVKPGAVVIDVGIN 230 (283)
T ss_pred cCCcccccc---ccccCCCEEEecCCc
Confidence 999999984 457999999999954
No 145
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=97.94 E-value=3.4e-05 Score=80.43 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=73.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCH-----HH---Hh--cCCc-EEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKL-----NE---VI--RTVD-IVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l-----~e---~l--~~aD-vVi~at 140 (542)
...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++. ++ .. .+.| ++++|+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 35799999999999999999999999996 78888888887777667764 2221 11 12 2467 999999
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|....+. +.++.+++|+.++.+|..
T Consensus 238 G~~~~~~-~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 238 GVPQTVE-LAIEIAGPRAQLALVGTL 262 (347)
T ss_pred CCHHHHH-HHHHHhhcCCEEEEEccC
Confidence 9876774 789999999999999864
No 146
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.92 E-value=3.5e-05 Score=79.58 Aligned_cols=89 Identities=15% Similarity=0.270 Sum_probs=71.2
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC------HHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------REHM 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~------~e~l 151 (542)
+|+|+|.|.+|..+|..+...|.+|++||+++.+.......|.. ..+..++++.+|+||.|..+...+. ...+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~ 82 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC 82 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHh
Confidence 79999999999999999999999999999999887666566654 4467788899999999876543221 1234
Q ss_pred hccCCCeEEEeccCCC
Q psy4626 152 DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 152 ~~mk~GailvnvG~g~ 167 (542)
..+++|.++++++...
T Consensus 83 ~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 83 EGLSRDALVIDMSTIH 98 (296)
T ss_pred hcCCCCCEEEECCCCC
Confidence 5678999999999885
No 147
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=5e-05 Score=78.56 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD 134 (542)
-.+++.- .+..+..+.||+|+|+|-+. +|+.+|..|... ++.|++++.. .-++.+.++.||
T Consensus 141 p~avi~l-L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~-------------T~~l~~~~~~AD 206 (297)
T PRK14167 141 PHGIQKL-LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR-------------TDDLAAKTRRAD 206 (297)
T ss_pred HHHHHHH-HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC-------------CCCHHHHHhhCC
Confidence 4445543 33446789999999999976 699999999876 8999999731 235677889999
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|||.+.|.+++++.+ .+|+|++++++|..
T Consensus 207 IvIsAvGkp~~i~~~---~ik~gaiVIDvGin 235 (297)
T PRK14167 207 IVVAAAGVPELIDGS---MLSEGATVIDVGIN 235 (297)
T ss_pred EEEEccCCcCccCHH---HcCCCCEEEEcccc
Confidence 999999999999864 47999999999953
No 148
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=3.7e-05 Score=79.10 Aligned_cols=90 Identities=24% Similarity=0.355 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHh----CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCc
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~----~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aD 134 (542)
-.+++.-+ +..+..+.||+|+|+|-+. +|+.++..|.. .||+|++++... .++.+.++.||
T Consensus 141 p~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~AD 206 (286)
T PRK14184 141 PAGVMTLL-ERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREAD 206 (286)
T ss_pred HHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCC
Confidence 34455433 3446789999999999986 69999999988 899999997322 35677889999
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+||.++|.+++++.+.+ |+|++++++|..
T Consensus 207 IVI~AvG~p~li~~~~v---k~GavVIDVGi~ 235 (286)
T PRK14184 207 FLFVAIGRPRFVTADMV---KPGAVVVDVGIN 235 (286)
T ss_pred EEEEecCCCCcCCHHHc---CCCCEEEEeeee
Confidence 99999999999987654 999999999954
No 149
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.88 E-value=0.00013 Score=72.78 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred cCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCC----chhh--------hhhhcCCc-ee-eCHHHHhcCC
Q psy4626 71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID----PICA--------LQACMDGF-SV-VKLNEVIRTV 133 (542)
Q Consensus 71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~d----p~r~--------~~A~~~G~-~v-~~l~e~l~~a 133 (542)
.+..+.+++++|+|+|..|+++|..|...|+ +|+++|++ +.|. ..+...+. .. .++.+.++++
T Consensus 19 ~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~ 98 (226)
T cd05311 19 VGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGA 98 (226)
T ss_pred hCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcC
Confidence 3456889999999999999999999999998 59999998 3332 11222211 11 3566778889
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 176 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~ 176 (542)
|++|.+|+ .++++.+.++.|.++.++........|...+...
T Consensus 99 dvlIgaT~-~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~ 140 (226)
T cd05311 99 DVFIGVSR-PGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAK 140 (226)
T ss_pred CEEEeCCC-CCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHH
Confidence 99999997 7889888999998888877766443454444444
No 150
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.86 E-value=5.7e-05 Score=78.13 Aligned_cols=91 Identities=24% Similarity=0.342 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhC----CCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTV 133 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~----Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a 133 (542)
|-.+++.- .+..+..+.|++|+|+|-+. +|+.+|..|... +++|++++.. .-++.+.++.|
T Consensus 144 Tp~avi~l-L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~-------------T~~l~~~~~~A 209 (297)
T PRK14168 144 TPAGIQEM-LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR-------------SKNLARHCQRA 209 (297)
T ss_pred CHHHHHHH-HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC-------------CcCHHHHHhhC
Confidence 34445543 33446789999999999975 699999999887 7999999732 23567788999
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
||||.++|.+++++.+. +|+|++++++|..
T Consensus 210 DIvVsAvGkp~~i~~~~---ik~gavVIDvGin 239 (297)
T PRK14168 210 DILIVAAGVPNLVKPEW---IKPGATVIDVGVN 239 (297)
T ss_pred CEEEEecCCcCccCHHH---cCCCCEEEecCCC
Confidence 99999999999998654 7899999999953
No 151
>PRK08605 D-lactate dehydrogenase; Validated
Probab=97.86 E-value=5.6e-05 Score=79.52 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=108.0
Q ss_pred HhcCCcEEEEcCCCcccCCHHHHhccCC--CeEEEeccCCCcccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCC
Q psy4626 129 VIRTVDIVVTATGNKNVVTREHMDKMKN--GCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEG 206 (542)
Q Consensus 129 ~l~~aDvVi~atG~~~lI~~e~l~~mk~--GailvnvG~g~~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~G 206 (542)
.+.++|.++....+ -++++.++.++. -..+...|.|-+.+|+++..++++.+..+...
T Consensus 42 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~------------------ 101 (332)
T PRK08605 42 EVEGFDGLSLSQQI--PLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSY------------------ 101 (332)
T ss_pred HhcCCCEEEEecCC--CCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCC------------------
Confidence 45789987765333 478888988876 35677778887788888887655544432110
Q ss_pred CcccccCCCChhHHHh--hHHHHHHHHHHHHhcCCCCCC--CCccccCChhhHHHHHHhcCCcccc----ccccccHHHH
Q psy4626 207 RLVNLSCSSLPSFVVS--ITACTQALALIELFNAPSGRY--KSDVYLLPKKMDEYVASLHLPTFDA----HLTELSDEQA 278 (542)
Q Consensus 207 rLvnl~~~thp~~vmd--~sfa~q~la~~~L~~~~~~~~--~~gv~~lp~~~d~~VA~l~L~~lg~----~i~~lt~~~a 278 (542)
| +. .....++. ++++.++.......++ +.| .+... + .++...++|+ .|++-.++++
T Consensus 102 ---~-~~-~vAE~~~~~~l~~~R~~~~~~~~~~~--~~~~~~~~~~--~-------~~l~g~~VgIIG~G~IG~~vA~~L 165 (332)
T PRK08605 102 ---S-PE-SIAEFTVTQAINLVRHFNQIQTKVRE--HDFRWEPPIL--S-------RSIKDLKVAVIGTGRIGLAVAKIF 165 (332)
T ss_pred ---C-hH-HHHHHHHHHHHHHhcChHHHHHHHHh--CCcccccccc--c-------ceeCCCEEEEECCCHHHHHHHHHH
Confidence 0 00 00001111 1112221111111121 222 22110 1 1334455555 7777777776
Q ss_pred -hhcCCC--CCCCCCCCccccCCee-eeehhhhcccCcEEEEc----cCCCCccCHhHHhcCCCCcEEEccCCCCccccc
Q psy4626 279 -KYMGLN--KAGPFKPSYYSMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350 (542)
Q Consensus 279 -~~lg~~--e~~p~~a~ea~mdG~~-v~~~~~a~~~~d~~~t~----tg~~~vi~~~~~~~mk~gail~n~gh~~~Ei~~ 350 (542)
+++|+. -.||...-+ .-.+.+ +.+++++++++|+|+++ ..++.+++.+.|+.||+|++++|++++.. +|-
T Consensus 166 ~~~~g~~V~~~d~~~~~~-~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~-vd~ 243 (332)
T PRK08605 166 AKGYGSDVVAYDPFPNAK-AATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSL-VDT 243 (332)
T ss_pred HhcCCCEEEEECCCccHh-HHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcc-cCH
Confidence 677772 334432111 112233 23789999999999983 44678999999999999999999999865 365
Q ss_pred ccccC
Q psy4626 351 NSLRT 355 (542)
Q Consensus 351 ~~l~~ 355 (542)
.+|.+
T Consensus 244 ~aL~~ 248 (332)
T PRK08605 244 KALLD 248 (332)
T ss_pred HHHHH
Confidence 55543
No 152
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.86 E-value=9.5e-05 Score=79.61 Aligned_cols=93 Identities=25% Similarity=0.345 Sum_probs=74.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhcCCceeeCHHH---HhcCCcEEEEcCCCc-ccCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKLNE---VIRTVDIVVTATGNK-NVVT 147 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~~G~~v~~l~e---~l~~aDvVi~atG~~-~lI~ 147 (542)
.+.+++|+|+|+|-+|..+|+.|...|. +|+++.+...|+. .|...|..++++++ .+..+|+||.+||.+ ++++
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence 4789999999999999999999999996 9999999998876 47778888887765 468999999999865 5567
Q ss_pred HHHHhcc-C--CCeEEEeccCC
Q psy4626 148 REHMDKM-K--NGCVVCNMGHS 166 (542)
Q Consensus 148 ~e~l~~m-k--~GailvnvG~g 166 (542)
.+.+... + +.-+++..+..
T Consensus 255 ~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 255 REMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred HHHHHHHHhcccCeEEEEecCC
Confidence 6665543 2 22467787754
No 153
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=7.9e-05 Score=77.11 Aligned_cols=91 Identities=24% Similarity=0.400 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHh----CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCC
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTV 133 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~----~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~a 133 (542)
|-.++++-+ +..+..+.||+|+|+|-+. +|+.++..|.. .|++|++++... .++.+.++.|
T Consensus 142 Tp~ail~ll-~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~A 207 (295)
T PRK14174 142 TPYGILELL-GRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQA 207 (295)
T ss_pred CHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhC
Confidence 344555433 3446789999999999976 69999999876 689999997422 3467788999
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|++|.++|.+++++.+.+ |+|++++++|..
T Consensus 208 DIvI~Avg~~~li~~~~v---k~GavVIDVgi~ 237 (295)
T PRK14174 208 DILIAAIGKARFITADMV---KPGAVVIDVGIN 237 (295)
T ss_pred CEEEEecCccCccCHHHc---CCCCEEEEeecc
Confidence 999999999999987665 999999999953
No 154
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.83 E-value=4.2e-05 Score=78.27 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=67.8
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCcccCC--HHHHhcc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVT--REHMDKM 154 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~~lI~--~e~l~~m 154 (542)
+|+|+|+|.+|..+|..|+..|.+|+++|+++.....+...|.. ..+..+.++++|+||.|+....+.. ++....+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~l 81 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPAL 81 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHhC
Confidence 69999999999999999999999999999998877666666642 2222346789999999975332221 3445567
Q ss_pred CCCeEEEeccCCC
Q psy4626 155 KNGCVVCNMGHSN 167 (542)
Q Consensus 155 k~GailvnvG~g~ 167 (542)
+++++++++|.-.
T Consensus 82 ~~~~ii~d~~Svk 94 (279)
T PRK07417 82 PPEAIVTDVGSVK 94 (279)
T ss_pred CCCcEEEeCcchH
Confidence 8899999988754
No 155
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.82 E-value=5.9e-05 Score=78.12 Aligned_cols=91 Identities=21% Similarity=0.304 Sum_probs=69.6
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCce---eeCHHHHhcCCcEEEEcCCCccc--CCHH
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKNV--VTRE 149 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~~~l--I~~e 149 (542)
-++|+|+|+|.+|..++..++..|. +|+++|+++.+...+...|.. ..+.++.+.++|+||.|+..... +-.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~ 85 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE 85 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence 4689999999999999999998885 899999998877666666642 23566778899999999864322 1123
Q ss_pred HHhccCCCeEEEeccCCC
Q psy4626 150 HMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 150 ~l~~mk~GailvnvG~g~ 167 (542)
....++++++++++|...
T Consensus 86 l~~~l~~~~iv~dvgs~k 103 (307)
T PRK07502 86 IAPHLKPGAIVTDVGSVK 103 (307)
T ss_pred HHhhCCCCCEEEeCccch
Confidence 445678999999988654
No 156
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.81 E-value=8.1e-05 Score=78.04 Aligned_cols=88 Identities=13% Similarity=0.171 Sum_probs=62.6
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----------CC----c-----e-eeCHHHHhcCCcEE
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG----F-----S-VVKLNEVIRTVDIV 136 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----------~G----~-----~-v~~l~e~l~~aDvV 136 (542)
++|+|+|+|.+|.++|..+...|.+|+++|++|.....+.. .| . . +.++++++.+||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999865332111 11 0 1 23567888999999
Q ss_pred EEcCCCc----ccCCHHHHhccCCCeEEEeccC
Q psy4626 137 VTATGNK----NVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 137 i~atG~~----~lI~~e~l~~mk~GailvnvG~ 165 (542)
+++.-.. ..+-++.-+.+++++++.+..+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS 120 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAIIASSTS 120 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence 9986421 1121344567799997774333
No 157
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=97.80 E-value=0.00012 Score=77.36 Aligned_cols=92 Identities=27% Similarity=0.296 Sum_probs=73.0
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a 139 (542)
...|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|++ +++. .+.+ .+.|+|+++
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 4579999999999999999999999999 799999988888777777764 2221 1211 368999999
Q ss_pred CCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626 140 TGNKNVVTREHMDKMKNG-CVVCNMGHS 166 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~G-ailvnvG~g 166 (542)
+|....+. +.++.++++ +.++.+|..
T Consensus 262 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~ 288 (365)
T cd08277 262 TGNADLMN-EALESTKLGWGVSVVVGVP 288 (365)
T ss_pred CCChHHHH-HHHHhcccCCCEEEEEcCC
Confidence 99766664 688999875 899988865
No 158
>KOG0023|consensus
Probab=97.79 E-value=4.9e-05 Score=78.61 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCcee--eCH------HHHh
Q psy4626 60 RESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV--VKL------NEVI 130 (542)
Q Consensus 60 ~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v--~~l------~e~l 130 (542)
|-.++.++++. +.. +|+.++|+|+|-+|....+.++++|++|++.+.+..+.+++.. +|++. ... +++.
T Consensus 167 GITvYspLk~~-g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~ 244 (360)
T KOG0023|consen 167 GITVYSPLKRS-GLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIM 244 (360)
T ss_pred ceEEeehhHHc-CCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHH
Confidence 34455566665 333 9999999999999999999999999999999988866666655 78762 222 2334
Q ss_pred cCCcEEEEcCC--CcccCCHHHHhccCCCeEEEeccCCCc--ccChHhhcCCCccee
Q psy4626 131 RTVDIVVTATG--NKNVVTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWE 183 (542)
Q Consensus 131 ~~aDvVi~atG--~~~lI~~e~l~~mk~GailvnvG~g~~--eid~~aL~~~~l~v~ 183 (542)
..-|.+++++- ..+.+. ..+..||.++.++.+|.... .+++..|.-+.+.+.
T Consensus 245 ~~~dg~~~~v~~~a~~~~~-~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~ 300 (360)
T KOG0023|consen 245 KTTDGGIDTVSNLAEHALE-PLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIK 300 (360)
T ss_pred HhhcCcceeeeeccccchH-HHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEE
Confidence 55566666654 555664 68999999999999998753 333444443333333
No 159
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.79 E-value=7.2e-05 Score=77.35 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=69.6
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcC---CcEEEEcCCCc----ccCCHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRT---VDIVVTATGNK----NVVTREH 150 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~---aDvVi~atG~~----~lI~~e~ 150 (542)
+|+|||+|.+|..+|+.+...|.+|++||+++.+.......|... .+++++++. +|+|+.|+.+. .++ .+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 699999999999999999999999999999998876666667654 366777655 69999987654 223 245
Q ss_pred HhccCCCeEEEeccCCC
Q psy4626 151 MDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 151 l~~mk~GailvnvG~g~ 167 (542)
+..+++|.++++++...
T Consensus 81 ~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSR 97 (299)
T ss_pred hccCCCCCEEEECCCCC
Confidence 56688999999998764
No 160
>PLN00203 glutamyl-tRNA reductase
Probab=97.79 E-value=8.9e-05 Score=82.43 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=70.1
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh-cC-Cc--eee---CHHHHhcCCcEEEEcCCC-ccc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MD-GF--SVV---KLNEVIRTVDIVVTATGN-KNV 145 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~-~~-G~--~v~---~l~e~l~~aDvVi~atG~-~~l 145 (542)
+.+++|+|+|+|.+|+.+++.|...|+ +|+++++++.+..... .. +. .+. ++.+++.++|+||+||+. .++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv 343 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPL 343 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCe
Confidence 678999999999999999999999998 7999999988765322 22 32 222 344567899999999874 457
Q ss_pred CCHHHHhccCCC-------eEEEeccCC
Q psy4626 146 VTREHMDKMKNG-------CVVCNMGHS 166 (542)
Q Consensus 146 I~~e~l~~mk~G-------ailvnvG~g 166 (542)
+.++.++.++++ -++++.+..
T Consensus 344 I~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 344 FLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred eCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 888888877432 367788864
No 161
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=97.77 E-value=0.00018 Score=75.71 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=77.0
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-cCCce-eeC------HHHHh-
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFS-VVK------LNEVI- 130 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-~~G~~-v~~------l~e~l- 130 (542)
...|+++.... ...+|++|+|.|. |.+|..+++.++.+|++|++++.++.+...+. ..|++ +++ ..+.+
T Consensus 144 ~TA~~al~~~~-~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~ 222 (348)
T PLN03154 144 FTAYAGFYEVC-SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALK 222 (348)
T ss_pred HHHHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHH
Confidence 34456654332 2457999999999 99999999999999999999988887766554 56764 222 22222
Q ss_pred ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.+.|++++++|.. .+ .+.++.+++++.++.+|..
T Consensus 223 ~~~~~gvD~v~d~vG~~-~~-~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 223 RYFPEGIDIYFDNVGGD-ML-DAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred HHCCCCcEEEEECCCHH-HH-HHHHHHhccCCEEEEECcc
Confidence 3689999999864 44 4789999999999999864
No 162
>PLN02712 arogenate dehydrogenase
Probab=97.77 E-value=8.4e-05 Score=85.07 Aligned_cols=95 Identities=11% Similarity=0.158 Sum_probs=71.0
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhc-CCcEEEEcCCC---cccC
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIR-TVDIVVTATGN---KNVV 146 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~-~aDvVi~atG~---~~lI 146 (542)
+....+++|+|||+|.||..+|+.++..|.+|+++|+++.. ..+...|+.. .++++++. .+|+||.|+-. ..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHH
Confidence 34567899999999999999999999999999999988643 3455567643 35677664 58999999642 3333
Q ss_pred CHHHHhccCCCeEEEeccCCC
Q psy4626 147 TREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 147 ~~e~l~~mk~GailvnvG~g~ 167 (542)
..-....+|+|+++++++...
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK 463 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVK 463 (667)
T ss_pred HHHHHhcCCCCcEEEECCCcc
Confidence 211223588999999999875
No 163
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=97.75 E-value=7.4e-05 Score=78.90 Aligned_cols=92 Identities=25% Similarity=0.299 Sum_probs=73.4
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a 139 (542)
...|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|++ +++. .+.+ .++|+|+++
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 3579999999999999999999999999 799999999888877777764 2321 1211 268999999
Q ss_pred CCCcccCCHHHHhccCCC-eEEEeccCC
Q psy4626 140 TGNKNVVTREHMDKMKNG-CVVCNMGHS 166 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~G-ailvnvG~g 166 (542)
+|....+. +.++.++++ +.++.+|..
T Consensus 264 ~g~~~~~~-~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 264 IGNVKVMR-AALEACHKGWGTSVIIGVA 290 (368)
T ss_pred CCChHHHH-HHHHhhccCCCeEEEEccC
Confidence 99765664 688999876 888888854
No 164
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.75 E-value=2.4e-05 Score=81.67 Aligned_cols=93 Identities=9% Similarity=0.112 Sum_probs=68.3
Q ss_pred hcCCcccc----ccccccHHHHhhcCCC--CCCCCCCCccccC-CeeeeehhhhcccCcEEEE----ccCCCCccCHhHH
Q psy4626 261 LHLPTFDA----HLTELSDEQAKYMGLN--KAGPFKPSYYSMD-GFSVVKLNEVIRTVDIVVT----ATGNKNVVTREHM 329 (542)
Q Consensus 261 l~L~~lg~----~i~~lt~~~a~~lg~~--e~~p~~a~ea~md-G~~v~~~~~a~~~~d~~~t----~tg~~~vi~~~~~ 329 (542)
+..+++|+ .|++-.+++++++|+. -.||.+.-..-.+ -+...+++++++++|+|++ +..++++|+.+.|
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l 213 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL 213 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence 34566666 8898899999999994 2344332111011 1223478999999999999 6678999999999
Q ss_pred hcCCCCcEEEccCCCCccccccccc
Q psy4626 330 DKMKNGCVVCNMGHSNTEIDVNSLR 354 (542)
Q Consensus 330 ~~mk~gail~n~gh~~~Ei~~~~l~ 354 (542)
++||+||+|+|+||+.+= |-++|-
T Consensus 214 ~~mk~ga~lIN~aRG~vV-de~aL~ 237 (312)
T PRK15469 214 EQLPDGAYLLNLARGVHV-VEDDLL 237 (312)
T ss_pred hcCCCCcEEEECCCcccc-CHHHHH
Confidence 999999999999999873 544443
No 165
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.74 E-value=0.00011 Score=75.96 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=69.6
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcC---CcEEEEcCCCc----ccCCHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRT---VDIVVTATGNK----NVVTREH 150 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~---aDvVi~atG~~----~lI~~e~ 150 (542)
+|+|+|+|.+|..+|+.|...|.+|++||+++.+.......|..+. +++++++. +|+|+.+..+. .++ ...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence 6999999999999999999999999999999988766666777654 56777654 69999976443 223 245
Q ss_pred HhccCCCeEEEeccCCC
Q psy4626 151 MDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 151 l~~mk~GailvnvG~g~ 167 (542)
+..+++|.++++++...
T Consensus 81 ~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 81 APLLSPGDIVIDGGNSY 97 (301)
T ss_pred HhhCCCCCEEEeCCCCC
Confidence 56788999999988764
No 166
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.71 E-value=8.8e-05 Score=76.16 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=64.8
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------CC-----------------ce-eeCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------DG-----------------FS-VVKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------~G-----------------~~-v~~l~e~l~~ 132 (542)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .+ .. ..++++++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 47999999999999999999999999999999877554321 11 11 2356678899
Q ss_pred CcEEEEcCCCcccCC----HHHHhccCCCeEE-EeccCCC
Q psy4626 133 VDIVVTATGNKNVVT----REHMDKMKNGCVV-CNMGHSN 167 (542)
Q Consensus 133 aDvVi~atG~~~lI~----~e~l~~mk~Gail-vnvG~g~ 167 (542)
+|+||+|.....-+. .+..+.+++++++ +|++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~ 121 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMS 121 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 999999876543222 1234556888877 5777543
No 167
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=97.71 E-value=0.00034 Score=72.51 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=77.2
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH---hcCC
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV---IRTV 133 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~---l~~a 133 (542)
.++++... ....|++|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|.. +++ ..+. +.+.
T Consensus 152 a~~~~~~~--~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~ 229 (333)
T cd08296 152 TFNALRNS--GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGA 229 (333)
T ss_pred HHHHHHhc--CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCC
Confidence 35555443 24578999999999999999999999999999999888777767666753 222 1111 2468
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
|++++++|....+. +.++.+++++.++.+|...
T Consensus 230 d~vi~~~g~~~~~~-~~~~~l~~~G~~v~~g~~~ 262 (333)
T cd08296 230 KLILATAPNAKAIS-ALVGGLAPRGKLLILGAAG 262 (333)
T ss_pred CEEEECCCchHHHH-HHHHHcccCCEEEEEecCC
Confidence 99999987555553 6899999999999998653
No 168
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=97.70 E-value=0.00025 Score=73.24 Aligned_cols=103 Identities=19% Similarity=0.136 Sum_probs=77.2
Q ss_pred HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHHHh--
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNEVI-- 130 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e~l-- 130 (542)
...|+++.+.. ...+|++|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|++ +++ ..+.+
T Consensus 124 ~TA~~~l~~~~-~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~ 202 (325)
T TIGR02825 124 LTAYFGLLEIC-GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKK 202 (325)
T ss_pred HHHHHHHHHHh-CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHH
Confidence 34455543332 245799999999 49999999999999999999998888887777777764 222 22221
Q ss_pred ---cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 ---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 ---~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.+.|++++++|... + .+.++.+++++.++..|..
T Consensus 203 ~~~~gvdvv~d~~G~~~-~-~~~~~~l~~~G~iv~~G~~ 239 (325)
T TIGR02825 203 ASPDGYDCYFDNVGGEF-S-NTVIGQMKKFGRIAICGAI 239 (325)
T ss_pred hCCCCeEEEEECCCHHH-H-HHHHHHhCcCcEEEEecch
Confidence 36899999998754 4 4789999999999998854
No 169
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.70 E-value=0.00022 Score=71.22 Aligned_cols=87 Identities=22% Similarity=0.397 Sum_probs=63.8
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhhhhhhc-CC-------ceeeCHHHHh-c
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DG-------FSVVKLNEVI-R 131 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~~~A~~-~G-------~~v~~l~e~l-~ 131 (542)
+..+.|++|+|.|+|.||+.+|+.|..+|++|+ +.|. |+........ .| ...++.++.+ .
T Consensus 26 ~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~ 105 (227)
T cd01076 26 GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL 105 (227)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee
Confidence 356899999999999999999999999999999 7787 5554443222 12 1223444444 5
Q ss_pred CCcEEEEcCCCcccCCHHHHhccCCCeEEE
Q psy4626 132 TVDIVVTATGNKNVVTREHMDKMKNGCVVC 161 (542)
Q Consensus 132 ~aDvVi~atG~~~lI~~e~l~~mk~Gailv 161 (542)
.+||++.|+ ..+.++.+....++ +.+|
T Consensus 106 ~~Dvlip~a-~~~~i~~~~~~~l~--a~~I 132 (227)
T cd01076 106 DCDILIPAA-LENQITADNADRIK--AKII 132 (227)
T ss_pred cccEEEecC-ccCccCHHHHhhce--eeEE
Confidence 899999998 55688988888887 4444
No 170
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=97.69 E-value=0.00018 Score=75.83 Aligned_cols=93 Identities=26% Similarity=0.340 Sum_probs=74.0
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-------HHHh-----cCCcEEEEc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-------NEVI-----RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-------~e~l-----~~aDvVi~a 139 (542)
..+|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|+. +++. .+.+ .++|+++++
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~ 264 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFEC 264 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 4579999999999999999999999999 899999999888878777764 2221 1212 258999999
Q ss_pred CCCcccCCHHHHhccCCC-eEEEeccCCC
Q psy4626 140 TGNKNVVTREHMDKMKNG-CVVCNMGHSN 167 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~G-ailvnvG~g~ 167 (542)
+|....+. +.+..++++ +.++.+|...
T Consensus 265 ~G~~~~~~-~~~~~~~~~~g~~v~~g~~~ 292 (369)
T cd08301 265 TGNIDAMI-SAFECVHDGWGVTVLLGVPH 292 (369)
T ss_pred CCChHHHH-HHHHHhhcCCCEEEEECcCC
Confidence 98765554 678889996 8999888653
No 171
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=97.68 E-value=0.00036 Score=72.82 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=83.3
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh-
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VI- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l- 130 (542)
.|+++... ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +++ ..+ ..
T Consensus 161 a~~~l~~~--~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~ 238 (351)
T cd08233 161 AWHAVRRS--GFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTG 238 (351)
T ss_pred HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhC
Confidence 45555333 24579999999999999999999999999 899998888877666566664 222 111 22
Q ss_pred -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC--cccChHhhcCCCccee
Q psy4626 131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWE 183 (542)
Q Consensus 131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~--~eid~~aL~~~~l~v~ 183 (542)
.+.|++++++|....+ .+.++.+++++.++.+|... ..++...+..+++++.
T Consensus 239 ~~~~d~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~ 293 (351)
T cd08233 239 GGGVDVSFDCAGVQATL-DTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLT 293 (351)
T ss_pred CCCCCEEEECCCCHHHH-HHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEE
Confidence 2599999999865555 36889999999999998753 3344433333344433
No 172
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.65 E-value=0.00013 Score=74.97 Aligned_cols=91 Identities=25% Similarity=0.372 Sum_probs=71.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh-hhhhhcCCceeeCHHHHhcCCcEEEEcCCC---cccCCHH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTRE 149 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r-~~~A~~~G~~v~~l~e~l~~aDvVi~atG~---~~lI~~e 149 (542)
.+.||+|+|||||.-|..-|..||..|.+|++-=+.... -..|..+|+.+.+.+++++.||+|..-+.. +.+...+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~ 94 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKE 94 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHH
Confidence 578999999999999999999999999998885433322 456889999999999999999999986532 2233334
Q ss_pred HHhccCCCeEEEecc
Q psy4626 150 HMDKMKNGCVVCNMG 164 (542)
Q Consensus 150 ~l~~mk~GailvnvG 164 (542)
.-..|+.|..+...-
T Consensus 95 I~p~Lk~G~aL~FaH 109 (338)
T COG0059 95 IAPNLKEGAALGFAH 109 (338)
T ss_pred hhhhhcCCceEEecc
Confidence 456789999776533
No 173
>PLN02256 arogenate dehydrogenase
Probab=97.64 E-value=0.00017 Score=75.02 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=67.5
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHh-cCCcEEEEcCCCc---ccCCHH
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI-RTVDIVVTATGNK---NVVTRE 149 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l-~~aDvVi~atG~~---~lI~~e 149 (542)
-.+.+++|+|+|.+|..++..++..|.+|+++++++.. ..+...|+.. .+.++++ ..+|+||.|+... .++. +
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~-~ 111 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLR-S 111 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHH-h
Confidence 35789999999999999999999999999999988743 3455566643 3566665 4799999997533 2232 2
Q ss_pred H-HhccCCCeEEEeccCC
Q psy4626 150 H-MDKMKNGCVVCNMGHS 166 (542)
Q Consensus 150 ~-l~~mk~GailvnvG~g 166 (542)
. ...+++++++++++..
T Consensus 112 l~~~~l~~~~iviDv~Sv 129 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSV 129 (304)
T ss_pred hhhhccCCCCEEEecCCc
Confidence 2 3457899999999985
No 174
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.63 E-value=0.00024 Score=73.86 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=74.4
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhh-hc---CCce--eeCHHHHhcCCcEEEEcCC-Cccc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQA-CM---DGFS--VVKLNEVIRTVDIVVTATG-NKNV 145 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A-~~---~G~~--v~~l~e~l~~aDvVi~atG-~~~l 145 (542)
...++++|+|+|..|+..+..+.. ++. +|.++++++.++... .. .++. +.+.++++.++|+||+||. ..++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~Pl 202 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRTPV 202 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCCce
Confidence 357899999999999999999864 675 899999999875432 11 2333 3467888999999999876 4466
Q ss_pred CCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626 146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR 176 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~ 176 (542)
+.. .+|+|+.+..+|.. ..|+|.+-+.
T Consensus 203 ~~~----~~~~g~hi~~iGs~~p~~~El~~~~~~ 232 (304)
T PRK07340 203 YPE----AARAGRLVVAVGAFTPDMAELAPRTVR 232 (304)
T ss_pred eCc----cCCCCCEEEecCCCCCCcccCCHHHHh
Confidence 652 37999999999976 3688876555
No 175
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.62 E-value=0.00022 Score=60.59 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=61.8
Q ss_pred EEEEEcCChhHHHHHHHHHhCC---CEEEEE-eCCchhhhhh-hcCCceee--CHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLG---CVIYIT-EIDPICALQA-CMDGFSVV--KLNEVIRTVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~G---a~Viv~-d~dp~r~~~A-~~~G~~v~--~l~e~l~~aDvVi~atG~~~lI~~e~l 151 (542)
+++|+|+|.+|..+++.+...| .+|+++ +++|.+..+. ...+..+. +..++++.+|+||.|.-.. .+. +.+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~-~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLP-EVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHH-HHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHH-HHH
Confidence 6899999999999999999999 899954 9999887653 45565543 5788899999999997432 222 333
Q ss_pred ---hccCCCeEEEecc
Q psy4626 152 ---DKMKNGCVVCNMG 164 (542)
Q Consensus 152 ---~~mk~GailvnvG 164 (542)
....++..++++.
T Consensus 79 ~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 79 SEIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHHTTSEEEEES
T ss_pred HHHhhccCCCEEEEeC
Confidence 3456777887764
No 176
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=97.62 E-value=0.00015 Score=74.61 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=62.2
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCC-------------ceeeCHHHHhcCC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDG-------------FSVVKLNEVIRTV 133 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G-------------~~v~~l~e~l~~a 133 (542)
++|+|+|.|.+|..+|+.+...|.+|+++|+++.+...+ ...| ..+.+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 589999999999999999999999999999998765321 1112 1122233567999
Q ss_pred cEEEEcCCC-ccc---CCHHHHhccCCCeEEE-eccCC
Q psy4626 134 DIVVTATGN-KNV---VTREHMDKMKNGCVVC-NMGHS 166 (542)
Q Consensus 134 DvVi~atG~-~~l---I~~e~l~~mk~Gailv-nvG~g 166 (542)
|+||+|.-. +.+ +-.+..+.++++++++ |++..
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 999998642 221 1123344678998886 66654
No 177
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.60 E-value=0.00028 Score=72.37 Aligned_cols=104 Identities=20% Similarity=0.293 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhc-CC----cee-eCHHHHhcCC
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACM-DG----FSV-VKLNEVIRTV 133 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~-~G----~~v-~~l~e~l~~a 133 (542)
.+.+.++.+..+..+.+++|+|+|+|.+|+.++..|+..| .+|+++++++.++..... .+ ..+ .+..+.+..+
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 186 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADF 186 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccC
Confidence 4455555542334578999999999999999999999999 699999999877543221 11 111 1234566889
Q ss_pred cEEEEcCCCcccC-----CHHHHhccCCCeEEEeccC
Q psy4626 134 DIVVTATGNKNVV-----TREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 134 DvVi~atG~~~lI-----~~e~l~~mk~GailvnvG~ 165 (542)
|+||+||... +- ..-.++.++++..++.+-.
T Consensus 187 DivInaTp~g-~~~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 187 DLIINATSAG-MSGELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CEEEECCcCC-CCCCCCCCCCCHHHcCCCCEEEEeec
Confidence 9999987421 11 0112344566666665543
No 178
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=97.57 E-value=0.00038 Score=72.94 Aligned_cols=103 Identities=21% Similarity=0.333 Sum_probs=77.3
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----H-------
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----N------- 127 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~------- 127 (542)
..++++.+.. ....|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|.. +++. .
T Consensus 164 ta~~al~~~~-~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~ 242 (361)
T cd08231 164 TVLAALDRAG-PVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVR 242 (361)
T ss_pred HHHHHHHhcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHH
Confidence 3455655442 23379999999999999999999999999 999999888877666666753 2221 1
Q ss_pred HHh--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 128 EVI--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 128 e~l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.. .+.|++++++|....+. +.++.+++++.++.+|..
T Consensus 243 ~~~~~~~~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~ 282 (361)
T cd08231 243 DITGGRGADVVIEASGHPAAVP-EGLELLRRGGTYVLVGSV 282 (361)
T ss_pred HHhCCCCCcEEEECCCChHHHH-HHHHHhccCCEEEEEcCC
Confidence 111 36899999998655553 688999999999998854
No 179
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.57 E-value=0.0004 Score=72.85 Aligned_cols=98 Identities=22% Similarity=0.225 Sum_probs=73.3
Q ss_pred cCcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhhh-----cCCce---eeCHHHHhcCCcEEEEcCCCccc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQAC-----MDGFS---VVKLNEVIRTVDIVVTATGNKNV 145 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A~-----~~G~~---v~~l~e~l~~aDvVi~atG~~~l 145 (542)
..++++|+|+|.+|+..+..+. ..+. +|.++++++.+..... ..+.. +.+.++++.++|+||+||.+.+-
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p 205 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP 205 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence 4789999999999998887664 5676 8999999998765322 12433 34567888999999999876554
Q ss_pred CCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626 146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR 176 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~ 176 (542)
+= . +.+|+|+.++.+|... .|++...+.
T Consensus 206 ~i--~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~ 236 (325)
T PRK08618 206 VF--S-EKLKKGVHINAVGSFMPDMQELPSEAIA 236 (325)
T ss_pred ch--H-HhcCCCcEEEecCCCCcccccCCHHHHh
Confidence 42 3 7789999999999863 577765444
No 180
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.56 E-value=0.00074 Score=69.09 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=60.2
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-----------hhcCC-------------ceeeCHHHHhcCC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDG-------------FSVVKLNEVIRTV 133 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-----------A~~~G-------------~~v~~l~e~l~~a 133 (542)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+... ....| ..+.+..+.+++|
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~a 83 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLKDA 83 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhccC
Confidence 47999999999999999999999999999999987632 12233 1212222347899
Q ss_pred cEEEEcCCCc-----ccCCHHHHhccCCCeEEE-eccC
Q psy4626 134 DIVVTATGNK-----NVVTREHMDKMKNGCVVC-NMGH 165 (542)
Q Consensus 134 DvVi~atG~~-----~lI~~e~l~~mk~Gailv-nvG~ 165 (542)
|+||+|.-.. .++ .+..+.++++++++ |++.
T Consensus 84 DlVi~av~e~~~~k~~~~-~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 84 DLVIEAATENMDLKKKIF-AQLDEIAKPEAILATNTSS 120 (282)
T ss_pred CeeeecccccHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence 9999986321 222 23334578888885 4443
No 181
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=97.56 E-value=0.00068 Score=71.20 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=82.8
Q ss_pred CchhhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-
Q psy4626 45 NDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS- 122 (542)
Q Consensus 45 n~s~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~- 122 (542)
.+++.-.-....+-.+-..|.++.+.. ..-.|++|+|.| .|-+|....|.++++|++++++-.++.+...+...|++
T Consensus 112 P~~ls~~eAAal~~~~~TA~~~l~~~~-~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~ 190 (326)
T COG0604 112 PDGLSFEEAAALPLAGLTAWLALFDRA-GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH 190 (326)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE
Confidence 344433333333333455566665532 234599999999 79999999999999998777776667666677888875
Q ss_pred eeC-----HHHHh------cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 123 VVK-----LNEVI------RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 123 v~~-----l~e~l------~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+++ +.+.+ ++.|+|+++.|... + .+.+..|++++.++.+|..
T Consensus 191 vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~-~-~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 191 VINYREEDFVEQVRELTGGKGVDVVLDTVGGDT-F-AASLAALAPGGRLVSIGAL 243 (326)
T ss_pred EEcCCcccHHHHHHHHcCCCCceEEEECCCHHH-H-HHHHHHhccCCEEEEEecC
Confidence 444 33322 36999999998643 3 3589999999999998864
No 182
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=97.56 E-value=0.00052 Score=71.17 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=68.2
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhc-CCce-ee-----CHHHHh-----cCCcEEEEcCCC
Q psy4626 77 GKQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFS-VV-----KLNEVI-----RTVDIVVTATGN 142 (542)
Q Consensus 77 GktVvViG~-G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~-~G~~-v~-----~l~e~l-----~~aDvVi~atG~ 142 (542)
|++|+|.|. |.+|..+++.++.+|+ +|++++.++.+...+.. .|++ ++ ++.+.+ .+.|++++++|.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~ 234 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG 234 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence 489999998 9999999999999999 89999888877665544 6654 22 122222 468999999987
Q ss_pred cccCCHHHHhccCCCeEEEeccC
Q psy4626 143 KNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 143 ~~lI~~e~l~~mk~GailvnvG~ 165 (542)
.. + .+.++.+++++.++.+|.
T Consensus 235 ~~-~-~~~~~~l~~~G~iv~~G~ 255 (345)
T cd08293 235 EI-S-DTVISQMNENSHIILCGQ 255 (345)
T ss_pred HH-H-HHHHHHhccCCEEEEEee
Confidence 54 4 478999999999999884
No 183
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=97.55 E-value=0.001 Score=69.15 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=77.2
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH------HHhcCCc
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN------EVIRTVD 134 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~------e~l~~aD 134 (542)
+.+.++.+. + ...|.+++|.|.|.+|+.+++.++.+|++|++++.++.+...+...|++ +.+.. ..-.+.|
T Consensus 157 ta~~~~~~~-~-~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d 234 (337)
T cd05283 157 TVYSPLKRN-G-VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLD 234 (337)
T ss_pred HHHHHHHhc-C-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCce
Confidence 335555443 2 4578999999999999999999999999999999888777666666654 22211 1125789
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
++++++|....+ .+.++.+++++.++.+|..+
T Consensus 235 ~v~~~~g~~~~~-~~~~~~l~~~G~~v~~g~~~ 266 (337)
T cd05283 235 LIIDTVSASHDL-DPYLSLLKPGGTLVLVGAPE 266 (337)
T ss_pred EEEECCCCcchH-HHHHHHhcCCCEEEEEeccC
Confidence 999999876434 47899999999999998653
No 184
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=97.54 E-value=0.00054 Score=70.20 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=71.5
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHh--cCCcEEEEcCCCcccCCHHH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI--RTVDIVVTATGNKNVVTREH 150 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l--~~aDvVi~atG~~~lI~~e~ 150 (542)
...|.+|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|+.. .+..+.. ...|++++++|....+. ..
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~-~~ 231 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGLE-LA 231 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHHH-HH
Confidence 45789999999999999999999999999999998888877776677653 2222222 46899999998754553 67
Q ss_pred HhccCCCeEEEeccC
Q psy4626 151 MDKMKNGCVVCNMGH 165 (542)
Q Consensus 151 l~~mk~GailvnvG~ 165 (542)
++.+++++.++..+.
T Consensus 232 ~~~l~~~g~~v~~~~ 246 (319)
T cd08242 232 LRLVRPRGTVVLKST 246 (319)
T ss_pred HHHhhcCCEEEEEcc
Confidence 888999998887664
No 185
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.54 E-value=0.00015 Score=69.71 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=53.5
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCc-------------e-eeCHHHHhcCC
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------S-VVKLNEVIRTV 133 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------~-v~~l~e~l~~a 133 (542)
+|+|+|+|.+|+++|..+...|.+|+++|+++..+..+. ..|. . ..+++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 689999999999999999999999999999997543321 1111 0 12345555 99
Q ss_pred cEEEEcCCC-----cccCCHHHHhccCCCeEEEeccC
Q psy4626 134 DIVVTATGN-----KNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 134 DvVi~atG~-----~~lI~~e~l~~mk~GailvnvG~ 165 (542)
|+||++.-. ..++ ++.-+.+++.+++.+..+
T Consensus 80 dlViEai~E~l~~K~~~~-~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF-AELDEICPPDTILASNTS 115 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH-HHHHCCS-TTSEEEE--S
T ss_pred heehhhccccHHHHHHHH-HHHHHHhCCCceEEecCC
Confidence 999998632 1222 223335589998884443
No 186
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.53 E-value=0.00034 Score=73.09 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=68.3
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--------C------ce-eeCHHHHhcCCcEEEEcCC
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------G------FS-VVKLNEVIRTVDIVVTATG 141 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--------G------~~-v~~l~e~l~~aDvVi~atG 141 (542)
..+|+|+|+|.+|..+|..|...|.+|++|++++.+....... | +. ..+++++++.+|+|+.++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 3479999999999999999999999999999987654322221 3 22 2356777889999999986
Q ss_pred CcccCCHHHHhccCCCeEEEeccCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+..+ .+.++.++++..++++..|
T Consensus 84 ~~~~--~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 84 SKAL--RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred hHHH--HHHHHhcCcCCEEEEEeec
Confidence 6543 5678889999998887765
No 187
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.53 E-value=0.0003 Score=72.28 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=62.2
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----------CC-------------ce-eeCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG-------------FS-VVKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----------~G-------------~~-v~~l~e~l~~ 132 (542)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| .. ..++ +.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHhcC
Confidence 57999999999999999999999999999999876543221 12 11 1233 45789
Q ss_pred CcEEEEcCCCcccCC----HHHHhccCCCeEEE-eccCC
Q psy4626 133 VDIVVTATGNKNVVT----REHMDKMKNGCVVC-NMGHS 166 (542)
Q Consensus 133 aDvVi~atG~~~lI~----~e~l~~mk~Gailv-nvG~g 166 (542)
+|+||+|.....-+. .+....++++++++ |++..
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 999999975421111 23445678899887 65543
No 188
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.53 E-value=0.00029 Score=72.60 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=61.7
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-----------hhcCCce--------------eeCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDGFS--------------VVKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-----------A~~~G~~--------------v~~l~e~l~~ 132 (542)
++|+|+|+|.+|.++|..+...|.+|+++|++|..... ....|.- ..++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999999999999999987544 2222311 2234 45789
Q ss_pred CcEEEEcCCCcccCCH---HHHhcc--CCCeEEEeccCC
Q psy4626 133 VDIVVTATGNKNVVTR---EHMDKM--KNGCVVCNMGHS 166 (542)
Q Consensus 133 aDvVi~atG~~~lI~~---e~l~~m--k~GailvnvG~g 166 (542)
+|+||+|.-..--+.. ..++.+ ++++++++..+.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 9999998642211211 134555 789998855443
No 189
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.52 E-value=0.00028 Score=72.02 Aligned_cols=87 Identities=18% Similarity=0.341 Sum_probs=64.7
Q ss_pred EEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCcccCC--HHHHh
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVT--REHMD 152 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~~lI~--~e~l~ 152 (542)
+++|+|+|.+|..+|..++..|. +|+++|+++.+...+...|.. ..+.+++. .+|+||.|+....+.. .+...
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~ 80 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD 80 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc
Confidence 69999999999999999998885 899999998877666666652 33555654 4999999986433321 23334
Q ss_pred ccCCCeEEEeccCCC
Q psy4626 153 KMKNGCVVCNMGHSN 167 (542)
Q Consensus 153 ~mk~GailvnvG~g~ 167 (542)
++++++++.+|.-.
T Consensus 81 -l~~~~iv~d~gs~k 94 (275)
T PRK08507 81 -IKENTTIIDLGSTK 94 (275)
T ss_pred -cCCCCEEEECccch
Confidence 77899999987643
No 190
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=97.50 E-value=0.00051 Score=71.64 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=76.8
Q ss_pred HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH------H---HHh--
Q psy4626 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL------N---EVI-- 130 (542)
Q Consensus 64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l------~---e~l-- 130 (542)
++++.++ ....|++|+|.|.|.+|+.+++.++.+|+ .|++++.++.+...+...|.+ +++. + +..
T Consensus 156 ~~~~~~~--~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 156 FHGAELA--NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred HHHHHcc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCC
Confidence 4444333 34579999999999999999999999999 589999888887777777754 2221 1 122
Q ss_pred cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.+.|++++++|....+. +.++.+++++.++.+|..+
T Consensus 234 ~~~d~vld~~g~~~~~~-~~~~~l~~~G~~v~~g~~~ 269 (351)
T cd08285 234 KGVDAVIIAGGGQDTFE-QALKVLKPGGTISNVNYYG 269 (351)
T ss_pred CCCcEEEECCCCHHHHH-HHHHHhhcCCEEEEecccC
Confidence 36899999998765664 7899999999999988654
No 191
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=97.49 E-value=0.00071 Score=67.80 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=76.2
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCC-ce-eeCHHH-H--hcCCcEE
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDG-FS-VVKLNE-V--IRTVDIV 136 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G-~~-v~~l~e-~--l~~aDvV 136 (542)
.++++.+. ...+|.+++|.|.|.+|..+++.++.+|++ |++++.++.+...+...| .+ +....+ . -.+.|++
T Consensus 86 a~~~~~~~--~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~v 163 (277)
T cd08255 86 ALNGVRDA--EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVV 163 (277)
T ss_pred HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEE
Confidence 34444432 345799999999999999999999999998 999998888777666666 22 222221 1 1468999
Q ss_pred EEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 137 VTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 137 i~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
++++|....+ .+.++.+++++.++++|..+
T Consensus 164 l~~~~~~~~~-~~~~~~l~~~g~~~~~g~~~ 193 (277)
T cd08255 164 IEASGSPSAL-ETALRLLRDRGRVVLVGWYG 193 (277)
T ss_pred EEccCChHHH-HHHHHHhcCCcEEEEEeccC
Confidence 9998765555 46889999999999988653
No 192
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=97.49 E-value=0.00023 Score=73.11 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=68.0
Q ss_pred EEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------HHHHhcc
Q psy4626 82 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REHMDKM 154 (542)
Q Consensus 82 ViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~e~l~~m 154 (542)
|||.|.+|..+|+.|...|.+|++||+++.+.......|... .++.++++++|+||.|..+...+. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 589999999999999999999999999998876666667654 467788999999999876533221 1334577
Q ss_pred CCCeEEEeccCCC
Q psy4626 155 KNGCVVCNMGHSN 167 (542)
Q Consensus 155 k~GailvnvG~g~ 167 (542)
++|.++++++..+
T Consensus 81 ~~g~~vid~st~~ 93 (288)
T TIGR01692 81 AKGSLLIDCSTID 93 (288)
T ss_pred CCCCEEEECCCCC
Confidence 8999999988554
No 193
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=97.48 E-value=0.00045 Score=74.27 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=75.8
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCC---EEEEEeCCchhhhhhhcC--------Cce--eeC------HHHH----
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGC---VIYITEIDPICALQACMD--------GFS--VVK------LNEV---- 129 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga---~Viv~d~dp~r~~~A~~~--------G~~--v~~------l~e~---- 129 (542)
...|++|+|+| .|++|..+++.++.+|+ +|+++|.++.|...+... |.. +++ ..+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 35789999998 69999999999999864 899999999888777664 543 232 1121
Q ss_pred h--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEec-cCC----CcccChHhhcCCCcceee
Q psy4626 130 I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNM-GHS----NTEIDVNSLRTPDLTWEK 184 (542)
Q Consensus 130 l--~~aDvVi~atG~~~lI~~e~l~~mk~Gailvnv-G~g----~~eid~~aL~~~~l~v~~ 184 (542)
. .++|++|+++|....+. +.++.+++++.++.+ |.. ...+++..+..+++++.+
T Consensus 253 t~g~g~D~vid~~g~~~~~~-~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g 313 (410)
T cd08238 253 TGGQGFDDVFVFVPVPELVE-EADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVG 313 (410)
T ss_pred hCCCCCCEEEEcCCCHHHHH-HHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEE
Confidence 2 36899999998776774 688999876655544 322 134555555444555444
No 194
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.47 E-value=0.00047 Score=72.83 Aligned_cols=91 Identities=21% Similarity=0.367 Sum_probs=70.3
Q ss_pred ccccCcEEEEEcC-ChhHHHHHHHHHh-CCC-EEEEEeCCchhhhh-hhcCC-ceeeCHHHHhcCCcEEEEcCCCc-cc-
Q psy4626 73 VMFGGKQVVLCGY-GEVGKGCCQSLKG-LGC-VIYITEIDPICALQ-ACMDG-FSVVKLNEVIRTVDIVVTATGNK-NV- 145 (542)
Q Consensus 73 ~~l~GktVvViG~-G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~-A~~~G-~~v~~l~e~l~~aDvVi~atG~~-~l- 145 (542)
..+.|++|+|+|+ |.||+.+++.|.. .|+ +++++++++.++.. +.+.+ .++.++++++.++|+|+.+++.+ ..
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~~ 230 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGVE 230 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCCc
Confidence 4688999999999 8999999999974 575 89999988776643 22222 23456778889999999998863 43
Q ss_pred CCHHHHhccCCCeEEEeccCC
Q psy4626 146 VTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g 166 (542)
++++. ++++.+++.+|+.
T Consensus 231 I~~~~---l~~~~~viDiAvP 248 (340)
T PRK14982 231 IDPET---LKKPCLMIDGGYP 248 (340)
T ss_pred CCHHH---hCCCeEEEEecCC
Confidence 66554 5899999999975
No 195
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=97.47 E-value=0.00059 Score=70.89 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=76.8
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCce-eeC------HHHHh-
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-VVK------LNEVI- 130 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~-v~~------l~e~l- 130 (542)
...|+++.+.. ....|++|+|.|. |.+|..+++.++.+|++|+++..++.+...+.. .|.+ +++ ..+.+
T Consensus 137 ~tA~~~l~~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~ 215 (338)
T cd08295 137 LTAYAGFYEVC-KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALK 215 (338)
T ss_pred HHHHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHH
Confidence 34456654432 2457999999998 999999999999999999998888877766655 6653 222 22222
Q ss_pred ----cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 ----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 ----~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.+.|+++++.|.. .+ .+.++.+++++.++..|..
T Consensus 216 ~~~~~gvd~v~d~~g~~-~~-~~~~~~l~~~G~iv~~G~~ 253 (338)
T cd08295 216 RYFPNGIDIYFDNVGGK-ML-DAVLLNMNLHGRIAACGMI 253 (338)
T ss_pred HhCCCCcEEEEECCCHH-HH-HHHHHHhccCcEEEEeccc
Confidence 3689999999863 44 4789999999999998853
No 196
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.47 E-value=0.00046 Score=70.94 Aligned_cols=89 Identities=18% Similarity=0.247 Sum_probs=61.1
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------------CCc-------------eeeCHHHHh
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------------DGF-------------SVVKLNEVI 130 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------------~G~-------------~v~~l~e~l 130 (542)
++|+|+|+|.+|.++|..+...|.+|+++|+++.+...+.. .|. ...+..+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 83 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYESL 83 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHHHh
Confidence 58999999999999999999999999999999876543211 111 111112467
Q ss_pred cCCcEEEEcCCCcccCCHHH---H-hccCCCeEEEeccCC
Q psy4626 131 RTVDIVVTATGNKNVVTREH---M-DKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 ~~aDvVi~atG~~~lI~~e~---l-~~mk~GailvnvG~g 166 (542)
+++|+||+|.....-+..+. + +.+++++++++...+
T Consensus 84 ~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg 123 (291)
T PRK06035 84 SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG 123 (291)
T ss_pred CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence 89999999975432122222 2 346788888865554
No 197
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=97.47 E-value=0.0013 Score=67.96 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=75.8
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeC----H----HHHh--
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVK----L----NEVI-- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~----l----~e~l-- 130 (542)
.|+++.+.......|++|+|.|.|.+|..+++.++.+| ++|++++.++.+.......|.. +.+ . .+..
T Consensus 154 a~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~ 233 (340)
T cd05284 154 AYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGG 233 (340)
T ss_pred HHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCC
Confidence 34555443222456999999999999999999999999 7999998888776655555643 222 1 1222
Q ss_pred cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.+.|++++++|....+ .+.++.+++++.++..|..+
T Consensus 234 ~~~dvvld~~g~~~~~-~~~~~~l~~~g~~i~~g~~~ 269 (340)
T cd05284 234 RGADAVIDFVGSDETL-ALAAKLLAKGGRYVIVGYGG 269 (340)
T ss_pred CCCCEEEEcCCCHHHH-HHHHHHhhcCCEEEEEcCCC
Confidence 3589999999865555 47899999999999988654
No 198
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.44 E-value=0.0003 Score=74.72 Aligned_cols=89 Identities=26% Similarity=0.443 Sum_probs=64.6
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-----eeCHHHHhcCCcEEEEcCCCcc---cCCHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVKLNEVIRTVDIVVTATGNKN---VVTRE 149 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-----v~~l~e~l~~aDvVi~atG~~~---lI~~e 149 (542)
++|+|+|+|.||..+|..++..|.+|.++++++.....+...+.. ..+++++++++|+||.|+.... ++ .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl-~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALL-AE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHH-HH
Confidence 479999999999999999999999999998887654433333322 1345677899999999975432 22 12
Q ss_pred HHh-ccCCCeEEEeccCCC
Q psy4626 150 HMD-KMKNGCVVCNMGHSN 167 (542)
Q Consensus 150 ~l~-~mk~GailvnvG~g~ 167 (542)
... .++++++++++|.-.
T Consensus 80 l~~~~l~~~~ivtDv~SvK 98 (359)
T PRK06545 80 LADLELKPGVIVTDVGSVK 98 (359)
T ss_pred HhhcCCCCCcEEEeCcccc
Confidence 223 377899999888754
No 199
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.44 E-value=0.00066 Score=73.62 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=66.8
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcCC-ceeeCH---HHHhcCCcEEEEcCCCcc-cC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDG-FSVVKL---NEVIRTVDIVVTATGNKN-VV 146 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~G-~~v~~l---~e~l~~aDvVi~atG~~~-lI 146 (542)
.+.|++|+|+|+|.+|+.++..|...|+ +++++.+++.++.. +...+ ..+.++ .+.+..+|+||.||+.++ +|
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi 257 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIV 257 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeE
Confidence 4689999999999999999999999997 89999999877643 33333 344444 456789999999998664 45
Q ss_pred CHHHHhccCCCeEEEeccCC
Q psy4626 147 TREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 147 ~~e~l~~mk~GailvnvG~g 166 (542)
+.+.+. .+.-+++..+..
T Consensus 258 ~~~~~~--~~~~~~iDLavP 275 (414)
T PRK13940 258 TCKYVG--DKPRVFIDISIP 275 (414)
T ss_pred CHHHhC--CCCeEEEEeCCC
Confidence 655442 223466777754
No 200
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.44 E-value=0.0005 Score=71.15 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=67.4
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHH---hcCCcEEEEcCCCc---ccCCHHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEV---IRTVDIVVTATGNK---NVVTREHM 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~---l~~aDvVi~atG~~---~lI~~e~l 151 (542)
+|+|||+|.+|..+|+.+...|.+|++||+++.+.......|.. ..+++++ +..+|+|+.+.... .++ .+..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~-~~l~ 80 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVL-EELA 80 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHH-HHHH
Confidence 69999999999999999999999999999999887665555543 2344443 46789999986543 233 2455
Q ss_pred hccCCCeEEEeccCCC
Q psy4626 152 DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 152 ~~mk~GailvnvG~g~ 167 (542)
..+++|.++++++...
T Consensus 81 ~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 81 PTLEKGDIVIDGGNSY 96 (298)
T ss_pred hhCCCCCEEEECCCCC
Confidence 6778999999988764
No 201
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.43 E-value=0.0006 Score=71.60 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=71.6
Q ss_pred cCcEEEEEcCChhHHHHHHHHHh-CC-CEEEEEeCCchhhhhh-h---cCCce---eeCHHHHhcCCcEEEEcCCC-ccc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKG-LG-CVIYITEIDPICALQA-C---MDGFS---VVKLNEVIRTVDIVVTATGN-KNV 145 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~-~G-a~Viv~d~dp~r~~~A-~---~~G~~---v~~l~e~l~~aDvVi~atG~-~~l 145 (542)
.-++++|||+|.+|+..++.+.. +. -+|.++++++.++... . ..|.. +.+.+++++++|+|++||.+ .++
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~ 206 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPV 206 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcE
Confidence 35899999999999886666643 33 4899999999876432 1 23432 34678899999999998853 456
Q ss_pred CCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626 146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR 176 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~ 176 (542)
+.. +.+|+|+.+..+|.. ..|+|...+.
T Consensus 207 ~~~---~~l~~g~~v~~vGs~~p~~~Eld~~~l~ 237 (325)
T TIGR02371 207 VKA---DWVSEGTHINAIGADAPGKQELDPEILK 237 (325)
T ss_pred ecH---HHcCCCCEEEecCCCCcccccCCHHHHh
Confidence 653 457999999999976 3678866554
No 202
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=97.43 E-value=0.00086 Score=68.73 Aligned_cols=102 Identities=22% Similarity=0.161 Sum_probs=76.1
Q ss_pred HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh---
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI--- 130 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l--- 130 (542)
...|+++.+.. ...+|++|+|.| .|.+|..+++.++.+|++|+++..++.+...+...|++ +.+ ..+.+
T Consensus 129 ~ta~~al~~~~-~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~ 207 (329)
T cd08294 129 LTAYFGLLEIC-KPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEA 207 (329)
T ss_pred HHHHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH
Confidence 44456654332 235799999999 59999999999999999999998888777766667764 222 11211
Q ss_pred --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626 131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
.+.|+++++.|.. .+ .+.++.+++++.++.+|.
T Consensus 208 ~~~gvd~vld~~g~~-~~-~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 208 APDGIDCYFDNVGGE-FS-STVLSHMNDFGRVAVCGS 242 (329)
T ss_pred CCCCcEEEEECCCHH-HH-HHHHHhhccCCEEEEEcc
Confidence 3689999999873 34 478999999999999884
No 203
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.43 E-value=0.00048 Score=69.61 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=65.2
Q ss_pred EEEEEcCChhHHHHHHHHHhCCC----EEEEE-eCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH-
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGC----VIYIT-EIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM- 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga----~Viv~-d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l- 151 (542)
+|++||+|.+|..+++.+...|. +|+++ ++++.+...+...|.... +..++++.+|+||.|.- +..+. +.+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~-~vl~ 79 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVK-DVLT 79 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHH-HHHH
Confidence 69999999999999999998887 89999 988887766666777644 56677889999999983 33332 332
Q ss_pred ---hccCCCeEEEeccCC
Q psy4626 152 ---DKMKNGCVVCNMGHS 166 (542)
Q Consensus 152 ---~~mk~GailvnvG~g 166 (542)
..++++.+++++..+
T Consensus 80 ~l~~~~~~~~~iIs~~~g 97 (266)
T PLN02688 80 ELRPLLSKDKLLVSVAAG 97 (266)
T ss_pred HHHhhcCCCCEEEEecCC
Confidence 446778888866444
No 204
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=97.42 E-value=0.00045 Score=76.81 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=63.6
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCCc-------------e-eeCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G~-------------~-v~~l~e~l~~ 132 (542)
++|+|||.|.+|.++|+.+...|.+|+++|+++..+..+ ...|. . ..+++ .+.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA-DLAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhCC
Confidence 689999999999999999999999999999999876543 33341 2 23343 3579
Q ss_pred CcEEEEcCCCcccCCHH---HHh-ccCCCeEEE-eccCCC
Q psy4626 133 VDIVVTATGNKNVVTRE---HMD-KMKNGCVVC-NMGHSN 167 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e---~l~-~mk~Gailv-nvG~g~ 167 (542)
||+||++.-...-+... .++ .++++++++ |++.-+
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~ 126 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 99999986432222222 233 458899985 888654
No 205
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=97.42 E-value=0.0017 Score=68.46 Aligned_cols=92 Identities=24% Similarity=0.290 Sum_probs=72.8
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHHHh-----cCCcEEEEcCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNEVI-----RTVDIVVTATG 141 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l-----~~aDvVi~atG 141 (542)
...|++|+|.|.|.+|..+++.++.+|+ .|++++.++.+...+...|+. +++ ..+.+ .+.|++++++|
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g 263 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTG 263 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCC
Confidence 3468999999999999999999999999 699999888887766666654 222 21211 46899999998
Q ss_pred CcccCCHHHHhccCCCeEEEeccCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
....+. +.++.+++++.++.+|..
T Consensus 264 ~~~~~~-~~~~~l~~~G~~v~~g~~ 287 (365)
T cd08278 264 VPAVIE-QAVDALAPRGTLALVGAP 287 (365)
T ss_pred CcHHHH-HHHHHhccCCEEEEeCcC
Confidence 766664 789999999999998864
No 206
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.42 E-value=0.00065 Score=65.58 Aligned_cols=96 Identities=20% Similarity=0.127 Sum_probs=64.6
Q ss_pred CccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CCce--e---eCH---HHHhcCCcEEE
Q psy4626 72 DVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGFS--V---VKL---NEVIRTVDIVV 137 (542)
Q Consensus 72 ~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G~~--v---~~l---~e~l~~aDvVi 137 (542)
+..+.+++++|+|. |.+|+.+++.+...|.+|+++.+++.+...... .+.. . .+. .+.++++|+||
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 34678999999996 999999999999999999999988866543211 1221 1 122 35678999999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.+|..........-...+++.+++++...+
T Consensus 103 ~at~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 103 AAGAAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ECCCCCceechhhhcccCceeEEEEccCCC
Confidence 987543321111222345677888877653
No 207
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.39 E-value=0.0012 Score=65.56 Aligned_cols=83 Identities=25% Similarity=0.289 Sum_probs=58.6
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc----------hhhhhhhcCC-ce------eeCHHHHh-cC
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP----------ICALQACMDG-FS------VVKLNEVI-RT 132 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp----------~r~~~A~~~G-~~------v~~l~e~l-~~ 132 (542)
+..+.|++|+|.|+|.+|+.+|+.|..+|+ .|.+.|.+. .........+ .. ..+.++++ ..
T Consensus 18 ~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (217)
T cd05211 18 GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLD 97 (217)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecc
Confidence 357899999999999999999999999998 566688877 4333222221 11 11223333 48
Q ss_pred CcEEEEcCCCcccCCHHHHhccC
Q psy4626 133 VDIVVTATGNKNVVTREHMDKMK 155 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e~l~~mk 155 (542)
+||++.|+.. +.++.+....++
T Consensus 98 ~DVlipaA~~-~~i~~~~a~~l~ 119 (217)
T cd05211 98 VDIFAPCALG-NVIDLENAKKLK 119 (217)
T ss_pred ccEEeecccc-CccChhhHhhcC
Confidence 9999998753 478877777776
No 208
>PRK10083 putative oxidoreductase; Provisional
Probab=97.39 E-value=0.00047 Score=71.31 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=71.9
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHh-CCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHHHh----cCCcEEEEcCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKG-LGCV-IYITEIDPICALQACMDGFS-VVK-----LNEVI----RTVDIVVTATG 141 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~-~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l----~~aDvVi~atG 141 (542)
...|++|+|.|.|.+|..+++.++. +|++ |++++.++.+...+...|++ +++ ..+.+ .++|++++++|
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC
Confidence 4579999999999999999999996 6995 77788888887777777764 222 22323 13579999998
Q ss_pred CcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
....+. +.++.+++++.++++|..+
T Consensus 238 ~~~~~~-~~~~~l~~~G~~v~~g~~~ 262 (339)
T PRK10083 238 HPSILE-EAVTLASPAARIVLMGFSS 262 (339)
T ss_pred CHHHHH-HHHHHhhcCCEEEEEccCC
Confidence 655564 7899999999999998653
No 209
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=97.39 E-value=0.0006 Score=70.51 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=66.5
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCH------HHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTR------EHM 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~------e~l 151 (542)
+|+|||.|.+|..+++.+...|.+|+++|++|. .......|.. +.+..++++.+|+||.|..+...+.. ..+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~ 80 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT 80 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence 699999999999999999999999999999874 3333445654 34677788999999998754432211 124
Q ss_pred hccCCCeEEEeccCCC
Q psy4626 152 DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 152 ~~mk~GailvnvG~g~ 167 (542)
..+++|.++++++..+
T Consensus 81 ~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 81 KASLKGKTIVDMSSIS 96 (292)
T ss_pred ccCCCCCEEEECCCCC
Confidence 4578899999988654
No 210
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.38 E-value=0.00081 Score=70.26 Aligned_cols=99 Identities=20% Similarity=0.243 Sum_probs=70.8
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhhhc----CC--cee-eCHHHHhcCCcEEEEcCCC-cc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM----DG--FSV-VKLNEVIRTVDIVVTATGN-KN 144 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A~~----~G--~~v-~~l~e~l~~aDvVi~atG~-~~ 144 (542)
...++++|+|+|..|+.+++.+.. ++. +|.+|++++.+...... .| +.+ .+.++++.++|+|++||.. .+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~p 202 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTEP 202 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCCC
Confidence 357899999999999999876654 564 89999999887653222 14 332 3567788999999998764 34
Q ss_pred cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR 176 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~ 176 (542)
++.. +.+++|..+.-+|... .|++...+.
T Consensus 203 vl~~---~~l~~g~~i~~ig~~~~~~~El~~~~~~ 234 (314)
T PRK06141 203 LVRG---EWLKPGTHLDLVGNFTPDMRECDDEAIR 234 (314)
T ss_pred EecH---HHcCCCCEEEeeCCCCcccccCCHHHHh
Confidence 5653 4579999877777653 467755443
No 211
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.38 E-value=0.00058 Score=74.58 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=67.7
Q ss_pred EEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhhcCCceee-CHHHHhcCCcEEEEcCCCc---ccCCHHHHh
Q psy4626 79 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSVV-KLNEVIRTVDIVVTATGNK---NVVTREHMD 152 (542)
Q Consensus 79 tVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~---~lI~~e~l~ 152 (542)
+++|+| +|.+|..+|..++..|.+|+++++++.+. ..+...|.... +..+++..+|+||.|+... .++ .+...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl-~~l~~ 80 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI-KEVAP 80 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH-HHHHh
Confidence 689997 89999999999999999999999988764 33455566543 5667888999999987532 223 24455
Q ss_pred ccCCCeEEEeccCC
Q psy4626 153 KMKNGCVVCNMGHS 166 (542)
Q Consensus 153 ~mk~GailvnvG~g 166 (542)
.+++++++++++..
T Consensus 81 ~l~~~~iViDvsSv 94 (437)
T PRK08655 81 HVKEGSLLMDVTSV 94 (437)
T ss_pred hCCCCCEEEEcccc
Confidence 67899999999964
No 212
>PLN02712 arogenate dehydrogenase
Probab=97.37 E-value=0.00055 Score=78.45 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=67.2
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHh-cCCcEEEEcCCCc---ccCCHHH
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI-RTVDIVVTATGNK---NVVTREH 150 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l-~~aDvVi~atG~~---~lI~~e~ 150 (542)
..++++|||+|.+|..+|..++..|.+|+++++++.+ ..+...|... .+.++++ ..+|+||.|+... .++..-.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~ 129 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP 129 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence 3468999999999999999999999999999987554 3455667653 3566655 5799999997532 2332111
Q ss_pred HhccCCCeEEEeccCCC
Q psy4626 151 MDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 151 l~~mk~GailvnvG~g~ 167 (542)
+..+++++++++++.-.
T Consensus 130 ~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 130 LQRLKRNTLFVDVLSVK 146 (667)
T ss_pred hhcCCCCeEEEECCCCc
Confidence 24578999999998654
No 213
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.36 E-value=0.0011 Score=72.23 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEE-Ee----------CCchhhh---hh-------
Q psy4626 58 MCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TE----------IDPICAL---QA------- 116 (542)
Q Consensus 58 g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv-~d----------~dp~r~~---~A------- 116 (542)
|+-..+-+++.+. +..+.|++|+|.|+|++|...|+.|..+|++|++ .| +|+..+. +.
T Consensus 210 Gv~~~~~~~~~~~-g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~ 288 (444)
T PRK14031 210 GNIYFLMEMLKTK-GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGR 288 (444)
T ss_pred HHHHHHHHHHHhc-CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCc
Confidence 3333333333333 5679999999999999999999999999999997 67 5443221 00
Q ss_pred -----hcCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhccCC-CeEEEecc
Q psy4626 117 -----CMDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKMKN-GCVVCNMG 164 (542)
Q Consensus 117 -----~~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk~-GailvnvG 164 (542)
...+...++.++.+ ..|||++-|. ..+.|+.+....++. |+.+|.-|
T Consensus 289 v~~~~~~~ga~~i~~d~~~~~~cDIliPaA-l~n~I~~~na~~l~a~g~~~V~Eg 342 (444)
T PRK14031 289 IREYAEKYGCKYVEGARPWGEKGDIALPSA-TQNELNGDDARQLVANGVIAVSEG 342 (444)
T ss_pred hhhhHhhcCCEEcCCcccccCCCcEEeecc-cccccCHHHHHHHHhcCCeEEECC
Confidence 01133444445554 5799999876 346888888888854 55555444
No 214
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=97.36 E-value=0.00083 Score=69.48 Aligned_cols=104 Identities=23% Similarity=0.288 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeC-----HH----HHh
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK-----LN----EVI 130 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~-----l~----e~l 130 (542)
...|+++... ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|....+ .. +..
T Consensus 154 ~ta~~~~~~~--~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 231 (344)
T cd08284 154 PTGYFGAKRA--QVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREAT 231 (344)
T ss_pred HHHHhhhHhc--CCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHh
Confidence 3445555442 34579999999999999999999999997 899998777776655566643221 11 122
Q ss_pred --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
++.|++++++|....+. +.++.+++++.++.+|..+
T Consensus 232 ~~~~~dvvid~~~~~~~~~-~~~~~l~~~g~~v~~g~~~ 269 (344)
T cd08284 232 EGRGADVVLEAVGGAAALD-LAFDLVRPGGVISSVGVHT 269 (344)
T ss_pred CCCCCCEEEECCCCHHHHH-HHHHhcccCCEEEEECcCC
Confidence 46899999988655553 7889999999999998653
No 215
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.35 E-value=0.00061 Score=69.98 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=61.4
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------------------------CCce-eeCHHHHhc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------------DGFS-VVKLNEVIR 131 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------------------------~G~~-v~~l~e~l~ 131 (542)
++|+|+|.|.+|.++|..+...|.+|+++|+++.....+.. .... ..+++++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 47999999999999999999999999999999865433211 1111 345667889
Q ss_pred CCcEEEEcCCCc-----ccCCHHHHhccCCCeEEE-ecc
Q psy4626 132 TVDIVVTATGNK-----NVVTREHMDKMKNGCVVC-NMG 164 (542)
Q Consensus 132 ~aDvVi~atG~~-----~lI~~e~l~~mk~Gailv-nvG 164 (542)
++|+||+|.... .++ .+.-+.++++++++ |++
T Consensus 84 ~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~sntS 121 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFY-EELAKVAPEKTIFATNSS 121 (287)
T ss_pred CCCEEEEeccCCHHHHHHHH-HHHHhhCCCCCEEEECcc
Confidence 999999987532 122 23334568888885 444
No 216
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=97.34 E-value=0.00088 Score=71.10 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=71.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-------HHHHh-----cCCcEEEEc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-------LNEVI-----RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-------l~e~l-----~~aDvVi~a 139 (542)
...|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|++ +++ ..+.+ .+.|+++++
T Consensus 188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~ 267 (373)
T cd08299 188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEV 267 (373)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEEC
Confidence 4569999999999999999999999999 899999999888877777763 222 11211 369999999
Q ss_pred CCCcccCCHHHHhcc-CCCeEEEeccCC
Q psy4626 140 TGNKNVVTREHMDKM-KNGCVVCNMGHS 166 (542)
Q Consensus 140 tG~~~lI~~e~l~~m-k~GailvnvG~g 166 (542)
+|....+. +.+..+ ++++.++.+|..
T Consensus 268 ~g~~~~~~-~~~~~~~~~~G~~v~~g~~ 294 (373)
T cd08299 268 IGRLDTMK-AALASCHEGYGVSVIVGVP 294 (373)
T ss_pred CCCcHHHH-HHHHhhccCCCEEEEEccC
Confidence 98755554 445544 678999999865
No 217
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=97.33 E-value=0.0015 Score=69.38 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=70.8
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC--------------------------
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-------------------------- 125 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-------------------------- 125 (542)
...|.+|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|.. +++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEAR 270 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccc
Confidence 457899999997 9999999999999999999998888887777667742 121
Q ss_pred -HHH----Hh--c-CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 126 -LNE----VI--R-TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 126 -l~e----~l--~-~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.+ +. . ++|++++++|.. .+ .+.++.+++++.++.+|..
T Consensus 271 ~~~~~v~~l~~~~~g~d~vid~~g~~-~~-~~~~~~l~~~G~~v~~g~~ 317 (393)
T cd08246 271 RFGKAIWDILGGREDPDIVFEHPGRA-TF-PTSVFVCDRGGMVVICAGT 317 (393)
T ss_pred hHHHHHHHHhCCCCCCeEEEECCchH-hH-HHHHHHhccCCEEEEEccc
Confidence 111 11 2 689999999863 45 3689999999999998753
No 218
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=97.33 E-value=0.00067 Score=73.28 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=65.4
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-------------------CC-cee-eCHHHHhcCCcEEE
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FSV-VKLNEVIRTVDIVV 137 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-------------------~G-~~v-~~l~e~l~~aDvVi 137 (542)
+|+|+|.|.+|..+|..+...|.+|+++|+++.+...... .| ... .++.++++++|+||
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 6999999999999999999999999999999876543211 23 222 35667788999999
Q ss_pred EcCCCccc---------C-C--HHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNV---------V-T--REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~l---------I-~--~e~l~~mk~GailvnvG~g 166 (542)
.|.+++.- + . ....+.+++|.++++.+.-
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv 122 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV 122 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence 99876531 1 1 2234567899999987753
No 219
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=97.32 E-value=0.00071 Score=75.19 Aligned_cols=90 Identities=18% Similarity=0.257 Sum_probs=62.7
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCCc-------------e-eeCHHHHhc
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIR 131 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G~-------------~-v~~l~e~l~ 131 (542)
=++|+|||.|.+|.++|+.+...|.+|+++|+++..+..+ ...|. . ..+++ .+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLH-ALA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHH-HhC
Confidence 3579999999999999999999999999999998776432 22331 1 23343 457
Q ss_pred CCcEEEEcCCCcccCCHHH---H-hccCCCeEEE-eccCCC
Q psy4626 132 TVDIVVTATGNKNVVTREH---M-DKMKNGCVVC-NMGHSN 167 (542)
Q Consensus 132 ~aDvVi~atG~~~lI~~e~---l-~~mk~Gailv-nvG~g~ 167 (542)
+||+||+|.-...-+..+. + ..++++++++ |++..+
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~ 124 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC
Confidence 9999999864322222222 2 3468888877 766544
No 220
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.32 E-value=0.0021 Score=65.07 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=75.4
Q ss_pred HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-ee-CHHHHh-cCCcEEEE
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VV-KLNEVI-RTVDIVVT 138 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~-~l~e~l-~~aDvVi~ 138 (542)
.++++.+.. . ..|.+|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|+. .. ..++.. .+.|++++
T Consensus 121 a~~~~~~~~-~-~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~ 198 (305)
T cd08270 121 ALRALRRGG-P-LLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVD 198 (305)
T ss_pred HHHHHHHhC-C-CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEE
Confidence 345544442 2 35999999999 8999999999999999999998888777766666653 21 212222 36899999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++|... + .+.++.|+.++.++.+|..
T Consensus 199 ~~g~~~-~-~~~~~~l~~~G~~v~~g~~ 224 (305)
T cd08270 199 SVGGPQ-L-ARALELLAPGGTVVSVGSS 224 (305)
T ss_pred CCCcHH-H-HHHHHHhcCCCEEEEEecc
Confidence 998753 4 4689999999999999854
No 221
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.31 E-value=0.0014 Score=66.58 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=64.1
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeC----------Cchhh-----hhhh--------cC---Cceee
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICA-----LQAC--------MD---GFSVV 124 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~----------dp~r~-----~~A~--------~~---G~~v~ 124 (542)
+..+.|++|+|.|+|.+|+.+|+.|..+|++|+ +.|. |+..+ .... .. +.+.+
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 567899999999999999999999999999999 6661 11111 0000 01 23445
Q ss_pred CHHHHh-cCCcEEEEcCCCcccCCHHHHhccC-CCeEEE-eccCCC
Q psy4626 125 KLNEVI-RTVDIVVTATGNKNVVTREHMDKMK-NGCVVC-NMGHSN 167 (542)
Q Consensus 125 ~l~e~l-~~aDvVi~atG~~~lI~~e~l~~mk-~Gailv-nvG~g~ 167 (542)
+.++++ ..|||++-|. ..+.|+.+..+.++ +++.+| -.+-++
T Consensus 113 ~~~~~~~~~~DIliPcA-l~~~I~~~na~~i~~~~ak~I~EgAN~p 157 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-TQNEVDAEDAKLLVKNGCKYVAEGANMP 157 (254)
T ss_pred CCcchhcCCCcEEEecc-ccccCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 555655 5899999975 44689988888774 355554 433333
No 222
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=97.30 E-value=0.0016 Score=67.07 Aligned_cols=89 Identities=17% Similarity=0.096 Sum_probs=69.1
Q ss_pred cCcEEEEE--cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcCC
Q psy4626 76 GGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTATG 141 (542)
Q Consensus 76 ~GktVvVi--G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~atG 141 (542)
.|.+++|+ |.|.+|..+++.++.+|++|++++.++.+...+...|++ +++ ..+ .. .+.|++++++|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g 221 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG 221 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence 56666664 889999999999999999999999888888777777764 222 211 22 36899999998
Q ss_pred CcccCCHHHHhccCCCeEEEeccCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.... .+.++.+++++.++.+|..
T Consensus 222 ~~~~--~~~~~~l~~~G~~v~~g~~ 244 (324)
T cd08291 222 GGLT--GQILLAMPYGSTLYVYGYL 244 (324)
T ss_pred cHHH--HHHHHhhCCCCEEEEEEec
Confidence 7544 3578899999999998853
No 223
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.29 E-value=0.0013 Score=71.93 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=63.6
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEE-e----------CCchhhhhhhcC------------CceeeCHHH
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT-E----------IDPICALQACMD------------GFSVVKLNE 128 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~-d----------~dp~r~~~A~~~------------G~~v~~l~e 128 (542)
+..+.|++|+|.|+|.+|+.+|+.|..+|++|+++ | +|+..+.+.... |...++.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 56789999999999999999999999999999987 8 665533221110 222334444
Q ss_pred Hh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEe
Q psy4626 129 VI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCN 162 (542)
Q Consensus 129 ~l-~~aDvVi~atG~~~lI~~e~l~~m-k~Gailvn 162 (542)
++ ..|||+|.|+ ..+.|+.+....+ ++++.+|-
T Consensus 307 i~~~d~DVliPaA-l~n~It~~~a~~i~~~~akiIv 341 (445)
T PRK09414 307 PWSVPCDIALPCA-TQNELDEEDAKTLIANGVKAVA 341 (445)
T ss_pred ccccCCcEEEecC-CcCcCCHHHHHHHHHcCCeEEE
Confidence 44 4799999987 3468887766666 34565554
No 224
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.29 E-value=0.00022 Score=62.37 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=60.2
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~~lI~~e~l 151 (542)
.+.|++|+|+|.|++|..-++.|...|++|+++..+. .. ....+. ....++.+.++|+|+.+++.+. ++.+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-~~---~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-EF---SEGLIQLIRREFEEDLDGADLVFAATDDPE-LNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-HH---HHTSCEEEESS-GGGCTTESEEEE-SS-HH-HHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-hh---hhhHHHHHhhhHHHHHhhheEEEecCCCHH-HHHHHH
Confidence 4689999999999999999999999999999998664 11 111122 1223455788999999998765 445566
Q ss_pred hccCCCeEEEeccC
Q psy4626 152 DKMKNGCVVCNMGH 165 (542)
Q Consensus 152 ~~mk~GailvnvG~ 165 (542)
+..+.-++++|+.-
T Consensus 79 ~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 79 ADARARGILVNVVD 92 (103)
T ss_dssp HHHHHTTSEEEETT
T ss_pred HHHhhCCEEEEECC
Confidence 66677778888763
No 225
>PLN02477 glutamate dehydrogenase
Probab=97.28 E-value=0.0014 Score=70.82 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=60.3
Q ss_pred cCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeCC----------chhhhhhh--------cCCceeeCHHHHh-
Q psy4626 71 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICALQAC--------MDGFSVVKLNEVI- 130 (542)
Q Consensus 71 ~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~d----------p~r~~~A~--------~~G~~v~~l~e~l- 130 (542)
.+..+.|++|+|.|+|++|+.+|+.|...|++|+ |.|.+ +..+.+.. ..+...++.++++
T Consensus 200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~ 279 (410)
T PLN02477 200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV 279 (410)
T ss_pred cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence 4567899999999999999999999999999999 77765 33322211 1122334445544
Q ss_pred cCCcEEEEcCCCcccCCHHHHhccC
Q psy4626 131 RTVDIVVTATGNKNVVTREHMDKMK 155 (542)
Q Consensus 131 ~~aDvVi~atG~~~lI~~e~l~~mk 155 (542)
..|||++-|. ..+.|+.+....++
T Consensus 280 ~~~DvliP~A-l~~~I~~~na~~i~ 303 (410)
T PLN02477 280 EPCDVLIPAA-LGGVINKENAADVK 303 (410)
T ss_pred ccccEEeecc-ccccCCHhHHHHcC
Confidence 5899999975 33478888787774
No 226
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.28 E-value=0.0012 Score=69.35 Aligned_cols=98 Identities=23% Similarity=0.224 Sum_probs=72.6
Q ss_pred cCcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhh-hhc----CCcee---eCHHHHhcCCcEEEEcCCC-cc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQ-ACM----DGFSV---VKLNEVIRTVDIVVTATGN-KN 144 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~-A~~----~G~~v---~~l~e~l~~aDvVi~atG~-~~ 144 (542)
..++++|+|+|..|+..+..+. .++. +|.++++++.++.. +.. .|..+ .++++++.++|+||+||.. .+
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p 207 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP 207 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence 4679999999999999999987 5785 89999999987653 211 24443 3567888999999998864 45
Q ss_pred cCCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR 176 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~ 176 (542)
++..+ .+++|..+..+|.. ..|+|.+-+.
T Consensus 208 ~i~~~---~l~~g~~i~~vg~~~p~~rEld~~~l~ 239 (326)
T TIGR02992 208 ILHAE---WLEPGQHVTAMGSDAEHKNEIDPAVIA 239 (326)
T ss_pred EecHH---HcCCCcEEEeeCCCCCCceecCHHHHh
Confidence 56543 47899999988865 3566655543
No 227
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=97.28 E-value=0.0018 Score=63.58 Aligned_cols=92 Identities=23% Similarity=0.276 Sum_probs=70.9
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH-----hcCCcEEEEcCCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV-----IRTVDIVVTATGNK 143 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~-----l~~aDvVi~atG~~ 143 (542)
..|++|+|.|.|.+|+.+++.++..|.+|++++.++.+...+...|.. +.+ ..+. -...|++++++|..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 579999999999999999999999999999999888776655555543 221 1111 15689999998864
Q ss_pred ccCCHHHHhccCCCeEEEeccCCC
Q psy4626 144 NVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 144 ~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
..+ ...++.|++++.++..|..+
T Consensus 213 ~~~-~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 ETL-AQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred HHH-HHHHHhcccCCEEEEEccCC
Confidence 444 36788999999999988653
No 228
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.28 E-value=0.00092 Score=69.40 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=51.1
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-----------hcCCc-------------e-eeCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-----------~~~G~-------------~-v~~l~e~l~~ 132 (542)
++|+|+|.|.+|..+|..+...|.+|+++|+++.....+ ...|. . +.++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 479999999999999999999999999999998654432 12332 2 3456778899
Q ss_pred CcEEEEcCCC
Q psy4626 133 VDIVVTATGN 142 (542)
Q Consensus 133 aDvVi~atG~ 142 (542)
+|+|++|...
T Consensus 83 ad~Vi~avpe 92 (308)
T PRK06129 83 ADYVQESAPE 92 (308)
T ss_pred CCEEEECCcC
Confidence 9999998753
No 229
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.27 E-value=0.0014 Score=68.57 Aligned_cols=98 Identities=17% Similarity=0.287 Sum_probs=73.1
Q ss_pred cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhh----hcCCcee---eCHHHHhcCCcEEEEcCC-Cccc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQA----CMDGFSV---VKLNEVIRTVDIVVTATG-NKNV 145 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A----~~~G~~v---~~l~e~l~~aDvVi~atG-~~~l 145 (542)
.-++++|+|+|..++..++.+.. +.. +|.+|++++.++... ...++.+ .+.++++++||||++||. +.++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P~ 206 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREPL 206 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCce
Confidence 35799999999999888777653 344 899999999886531 2224443 357888999999999875 4466
Q ss_pred CCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626 146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR 176 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~ 176 (542)
+.. +.+|+|..+..+|.+ ..|+|.+-+.
T Consensus 207 ~~~---~~l~~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 207 LQA---EDIQPGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred eCH---HHcCCCcEEEecCCCCcccccCCHHHHh
Confidence 654 457899999999976 2688876655
No 230
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.00065 Score=69.95 Aligned_cols=90 Identities=26% Similarity=0.337 Sum_probs=65.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchh--hhhhhcCCcee---eCH-HHHhcCCcEEEEcCC---CcccCC
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC--ALQACMDGFSV---VKL-NEVIRTVDIVVTATG---NKNVVT 147 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r--~~~A~~~G~~v---~~l-~e~l~~aDvVi~atG---~~~lI~ 147 (542)
-.+|+|+|+|-||..+|+.++..|..|.++++|... ...+...|... .+. .+....+|+||.++. +..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l- 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL- 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH-
Confidence 468999999999999999999999988777766654 33444455421 222 456688999999874 23334
Q ss_pred HHHHhccCCCeEEEeccCCC
Q psy4626 148 REHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~g~ 167 (542)
++....+|+|++++.+|+-.
T Consensus 82 ~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 82 KELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred HHhcccCCCCCEEEeccccc
Confidence 23334688999999999875
No 231
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=97.25 E-value=0.0018 Score=66.63 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=74.4
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHH-HhcCCcEEEEcC
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNE-VIRTVDIVVTAT 140 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e-~l~~aDvVi~at 140 (542)
.|+++..+ ....|.+++|.|.|.+|..+++.++..|++|++++.++.+...+...|.. +.+.++ .-++.|++++++
T Consensus 156 a~~~~~~~--~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~ 233 (329)
T cd08298 156 GYRALKLA--GLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFA 233 (329)
T ss_pred HHHHHHhh--CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcC
Confidence 45555332 34578999999999999999999999999999998888777666666764 222222 124689999987
Q ss_pred CCcccCCHHHHhccCCCeEEEeccC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
+....+ .+.++.+++++.++..|.
T Consensus 234 ~~~~~~-~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 234 PVGALV-PAALRAVKKGGRVVLAGI 257 (329)
T ss_pred CcHHHH-HHHHHHhhcCCEEEEEcC
Confidence 655555 478999999999998773
No 232
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.25 E-value=0.001 Score=68.81 Aligned_cols=86 Identities=15% Similarity=0.203 Sum_probs=62.2
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--------------Cce-eeCHHHHhcCCcEEEEcCCCc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------------GFS-VVKLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--------------G~~-v~~l~e~l~~aDvVi~atG~~ 143 (542)
+|+|+|+|.+|..+|..|...|.+|.++++++.+....... +.. ..+.++++..+|+||.|+.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~ 82 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPSQ 82 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCHH
Confidence 69999999999999999999999999999988665433332 222 235566788999999998653
Q ss_pred ccCC--HHHHhccCCCeEEEecc
Q psy4626 144 NVVT--REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 144 ~lI~--~e~l~~mk~GailvnvG 164 (542)
.+-. .+....++++.+++++.
T Consensus 83 ~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 83 ALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEe
Confidence 2211 12334457788888775
No 233
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.24 E-value=0.0006 Score=67.10 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=65.7
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCC-ceeeC---HHHHhcCCcEEEEcCCCcccCC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDG-FSVVK---LNEVIRTVDIVVTATGNKNVVT 147 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G-~~v~~---l~e~l~~aDvVi~atG~~~lI~ 147 (542)
..+.|++|+|+|.|.+|..-++.|...|++|+|++.++....+ ....| ..... ..+.+.++|+||.+|+.+. ++
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~-ln 83 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE-LN 83 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH-HH
Confidence 3578999999999999999999999999999999866543221 11222 32221 1345689999999998854 45
Q ss_pred HHHHhccCCCeEEEecc
Q psy4626 148 REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG 164 (542)
.......+.-++++|+.
T Consensus 84 ~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 84 RRVAHAARARGVPVNVV 100 (205)
T ss_pred HHHHHHHHHcCCEEEEC
Confidence 56666667777888866
No 234
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=97.24 E-value=0.00092 Score=74.12 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=62.0
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-------------------cCC-ce-eeCHHHHhcCCcEE
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-------------------MDG-FS-VVKLNEVIRTVDIV 136 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-------------------~~G-~~-v~~l~e~l~~aDvV 136 (542)
++|+|||+|.+|.++|..+...|.+|+++|++|.+..... ..| .. ..++.+++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 4799999999999999999999999999999987643211 012 22 33567788999999
Q ss_pred EEcCCCcccCCH----HHHhccCCCeEEEeccCC
Q psy4626 137 VTATGNKNVVTR----EHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 137 i~atG~~~lI~~----e~l~~mk~GailvnvG~g 166 (542)
+++.....-+.. +.-..++++++|.+...+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg 118 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSG 118 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 998754321211 222346778776654444
No 235
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.24 E-value=0.002 Score=65.68 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hc---CC-ceeeCHHHH-hcCCc
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CM---DG-FSVVKLNEV-IRTVD 134 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~---~G-~~v~~l~e~-l~~aD 134 (542)
.+++.++.+. .....+++++|+|.|.+|+.++..+...|.+|+++++++.+.... .. .+ ....+.++. ...+|
T Consensus 102 ~G~~~~l~~~-~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~D 180 (270)
T TIGR00507 102 IGLVSDLERL-IPLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVD 180 (270)
T ss_pred HHHHHHHHhc-CCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCcc
Confidence 3444555442 234568999999999999999999999999999999988765422 11 12 123344433 35799
Q ss_pred EEEEcCCCc--ccCCH--HHHhccCCCeEEEeccCCC
Q psy4626 135 IVVTATGNK--NVVTR--EHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 135 vVi~atG~~--~lI~~--e~l~~mk~GailvnvG~g~ 167 (542)
+||+||+.. +-+.. -..+.++++.+++.+...+
T Consensus 181 ivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p 217 (270)
T TIGR00507 181 LIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP 217 (270)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC
Confidence 999998642 11110 0134577888888776554
No 236
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.24 E-value=0.00096 Score=69.72 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=59.4
Q ss_pred CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhh----hcCCcee---eCHHHHhcCCcEEEEcCCC-c--c
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQA----CMDGFSV---VKLNEVIRTVDIVVTATGN-K--N 144 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A----~~~G~~v---~~l~e~l~~aDvVi~atG~-~--~ 144 (542)
-++++|+|+|..++.-++.+. .++. +|.+|++++.++... ...|..+ .+.++++++||||++||.. . +
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P 207 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP 207 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence 469999999999988777775 4666 999999999765421 1124443 3678999999999998864 3 4
Q ss_pred cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR 176 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~ 176 (542)
++.. +.+++|..+..+|... .|+|.+.+.
T Consensus 208 ~~~~---~~l~~g~hi~~iGs~~~~~~El~~~~~~ 239 (313)
T PF02423_consen 208 VFDA---EWLKPGTHINAIGSYTPGMRELDDELLK 239 (313)
T ss_dssp SB-G---GGS-TT-EEEE-S-SSTTBESB-HHHHH
T ss_pred cccH---HHcCCCcEEEEecCCCCchhhcCHHHhc
Confidence 6753 4689999999999873 577766554
No 237
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=97.23 E-value=0.0018 Score=66.18 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=70.3
Q ss_pred cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH----HHh-----cCCcEEEEcCCCcc
Q psy4626 76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN----EVI-----RTVDIVVTATGNKN 144 (542)
Q Consensus 76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~----e~l-----~~aDvVi~atG~~~ 144 (542)
.|++|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|.. +.+.. +.+ .+.|++++++|..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~- 224 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK- 224 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-
Confidence 4789999999 9999999999999999999999888887766666753 22211 111 3589999999874
Q ss_pred cCCHHHHhccCCCeEEEeccCC
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g 166 (542)
.+ .+.++.+++++.++.+|..
T Consensus 225 ~~-~~~~~~l~~~G~~i~~g~~ 245 (326)
T cd08289 225 TL-AYLLSTLQYGGSVAVSGLT 245 (326)
T ss_pred HH-HHHHHHhhcCCEEEEEeec
Confidence 44 4789999999999999854
No 238
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.20 E-value=0.00081 Score=74.43 Aligned_cols=89 Identities=12% Similarity=0.132 Sum_probs=68.2
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCce----eeCHHHHhc---CCcEEEEcCCCcccCC
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS----VVKLNEVIR---TVDIVVTATGNKNVVT 147 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~~----v~~l~e~l~---~aDvVi~atG~~~lI~ 147 (542)
+|++||.|.+|..+|+.|...|.+|.|||+++.+...... .|.. ..++++++. .+|+||.+..+...++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999999987654322 1432 346777765 4999999764433332
Q ss_pred ---HHHHhccCCCeEEEeccCCC
Q psy4626 148 ---REHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 148 ---~e~l~~mk~GailvnvG~g~ 167 (542)
...++.+++|.++|+.|...
T Consensus 88 ~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 88 QTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred HHHHHHHhhcCCCCEEEECCCCC
Confidence 24577889999999998764
No 239
>PLN02858 fructose-bisphosphate aldolase
Probab=97.20 E-value=0.00087 Score=82.41 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=74.1
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC------H
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------R 148 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~------~ 148 (542)
.+++|++||+|.+|..+|+.|...|.+|.+||+++.+.......|... .++.++.+.+|+||.+..+...+. .
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 467899999999999999999999999999999998877666677764 467888999999999865433332 1
Q ss_pred HHHhccCCCeEEEeccCCC
Q psy4626 149 EHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g~ 167 (542)
..++.+++|.++++++..+
T Consensus 83 g~~~~l~~g~iivd~STi~ 101 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTIL 101 (1378)
T ss_pred hHHhcCCCcCEEEECCCCC
Confidence 2356688999999988764
No 240
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.20 E-value=0.0018 Score=66.44 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=64.9
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCC----EEEEEeCCchhhhhhhc-CCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM-DGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga----~Viv~d~dp~r~~~A~~-~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l 151 (542)
.++++||+|.+|..++..+...|. +|+++|+++.++..+.. .|.... +..++++.+|+||.|.-. ..+. +.+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~-~vl 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYS-SVI 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHH-HHH
Confidence 479999999999999999988774 69999998887665443 576544 566778899999998753 3332 233
Q ss_pred h----ccCCCeEEEeccCC
Q psy4626 152 D----KMKNGCVVCNMGHS 166 (542)
Q Consensus 152 ~----~mk~GailvnvG~g 166 (542)
+ .++++.+++++.-|
T Consensus 81 ~~l~~~~~~~~lvISi~AG 99 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG 99 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC
Confidence 3 35677888888766
No 241
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.19 E-value=0.0012 Score=68.65 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=59.9
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCC-HHHHh--
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT-REHMD-- 152 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~-~e~l~-- 152 (542)
.+++|+|+|+|.+|..+|+.|...|.+|.+|++++. .+++++++++|+||.+.....+-. .+.+.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHh
Confidence 357899999999999999999999999999997652 356677889999999875432211 02232
Q ss_pred ccCCCeEEEeccCC
Q psy4626 153 KMKNGCVVCNMGHS 166 (542)
Q Consensus 153 ~mk~GailvnvG~g 166 (542)
.++++.+++++..+
T Consensus 71 ~~~~~~ivi~~s~g 84 (308)
T PRK14619 71 NLPPETIIVTATKG 84 (308)
T ss_pred cCCCCcEEEEeCCc
Confidence 36778889887754
No 242
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.19 E-value=0.0012 Score=68.44 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=58.9
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-----CC--------------ce-eeCHHHHhcCCcEEE
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DG--------------FS-VVKLNEVIRTVDIVV 137 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-----~G--------------~~-v~~l~e~l~~aDvVi 137 (542)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+.. .| .. ..+.+++++++|+||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 57999999999999999999999999999998866543321 11 12 234567788999999
Q ss_pred EcCCCcccCCHHH---Hh-ccCCCeEEEec
Q psy4626 138 TATGNKNVVTREH---MD-KMKNGCVVCNM 163 (542)
Q Consensus 138 ~atG~~~lI~~e~---l~-~mk~Gailvnv 163 (542)
.|.-...-+..+. +. .+++++++++.
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~ 114 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATN 114 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 9975432111122 32 35667776533
No 243
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.19 E-value=0.0019 Score=70.39 Aligned_cols=92 Identities=24% Similarity=0.346 Sum_probs=65.3
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEE--------Ee---CCchhh---hhhh------------c-CCceee
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI--------TE---IDPICA---LQAC------------M-DGFSVV 124 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv--------~d---~dp~r~---~~A~------------~-~G~~v~ 124 (542)
+..+.|++|+|-|+|++|..+|+.|..+|++|++ +| +|+.+. .+.. . .|.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5678999999999999999999999999999999 77 555431 1110 1 133444
Q ss_pred CHHHHh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEecc
Q psy4626 125 KLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMG 164 (542)
Q Consensus 125 ~l~e~l-~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG 164 (542)
+.++++ ..|||++-|. ..+.|+.+..+.+ +.++.+|-=|
T Consensus 303 ~~~~~~~~~cDVliPcA-l~n~I~~~na~~l~~~~ak~V~Eg 343 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-TQNELNGEDADKLIKNGVLCVAEV 343 (445)
T ss_pred CCccceeccccEEeecc-ccccCCHHHHHHHHHcCCeEEEeC
Confidence 545554 5799999875 4468888777777 4456555433
No 244
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=97.18 E-value=0.0036 Score=63.81 Aligned_cols=89 Identities=21% Similarity=0.210 Sum_probs=69.4
Q ss_pred cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH-------HHh--cCCcEEEEcCCCcc
Q psy4626 76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN-------EVI--RTVDIVVTATGNKN 144 (542)
Q Consensus 76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l--~~aDvVi~atG~~~ 144 (542)
.|.+|+|.|. |.+|..+++.++.+|++|++++.++.+...+...|.+ +.+.. ... .+.|++++++|..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~- 224 (325)
T cd05280 146 EDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGD- 224 (325)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchH-
Confidence 3579999998 9999999999999999999999888877766666653 22211 111 3689999998874
Q ss_pred cCCHHHHhccCCCeEEEeccCC
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g 166 (542)
.+ .+.++.+++++.++..|..
T Consensus 225 ~~-~~~~~~l~~~g~~v~~g~~ 245 (325)
T cd05280 225 VL-ANLLKQTKYGGVVASCGNA 245 (325)
T ss_pred HH-HHHHHhhcCCCEEEEEecC
Confidence 34 4789999999999998854
No 245
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.17 E-value=0.0028 Score=64.05 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=65.4
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEE--------eCCchhhh---hh-hcC-------------CceeeCHH
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--------EIDPICAL---QA-CMD-------------GFSVVKLN 127 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~--------d~dp~r~~---~A-~~~-------------G~~v~~l~ 127 (542)
..+.|++|+|-|+|.+|..+|+.|...|++|+++ |.+..... .. ... +.+.++.+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 3489999999999999999999999999998876 54443221 10 011 12233443
Q ss_pred -HHh-cCCcEEEEcCCCcccCCHHHHh-ccCCCeEEEeccC
Q psy4626 128 -EVI-RTVDIVVTATGNKNVVTREHMD-KMKNGCVVCNMGH 165 (542)
Q Consensus 128 -e~l-~~aDvVi~atG~~~lI~~e~l~-~mk~GailvnvG~ 165 (542)
+.+ ..|||++-|. ..+.|+.+... .+++|+.+|--|-
T Consensus 108 ~~il~~~~DiliP~A-~~~~I~~~~~~~~i~~~akiIvegA 147 (244)
T PF00208_consen 108 DEILSVDCDILIPCA-LGNVINEDNAPSLIKSGAKIIVEGA 147 (244)
T ss_dssp CHGGTSSSSEEEEES-SSTSBSCHHHCHCHHTT-SEEEESS
T ss_pred cccccccccEEEEcC-CCCeeCHHHHHHHHhccCcEEEeCc
Confidence 555 6899999984 55689988888 8888888776553
No 246
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=97.17 E-value=0.0017 Score=69.14 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=71.4
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC--------HH----HHh--cCCcEEE
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK--------LN----EVI--RTVDIVV 137 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~--------l~----e~l--~~aDvVi 137 (542)
...|.+|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +++ .. +.. ++.|+|+
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvl 280 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQV 280 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEE
Confidence 4579999999999999999999999999 799998888777666666653 221 11 122 4689999
Q ss_pred EcCCCc-ccCCHHHHhccCCCeEEEeccCCC
Q psy4626 138 TATGNK-NVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 138 ~atG~~-~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
+++|.. ..+ .+.++.+++++.++++|..+
T Consensus 281 d~~g~~~~~~-~~~~~~l~~~G~~v~~g~~~ 310 (384)
T cd08265 281 EAAGAPPATI-PQMEKSIAINGKIVYIGRAA 310 (384)
T ss_pred ECCCCcHHHH-HHHHHHHHcCCEEEEECCCC
Confidence 998863 344 36788899999999998653
No 247
>PRK12862 malic enzyme; Reviewed
Probab=97.17 E-value=0.0024 Score=74.13 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=91.5
Q ss_pred HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCC------------chhhhh
Q psy4626 54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICALQ 115 (542)
Q Consensus 54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~d------------p~r~~~ 115 (542)
|..+||+-.+..++. +.++..+...+++|+|+|.-|.++|+.+...|+ +++++|.. +.+...
T Consensus 167 DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~ 246 (763)
T PRK12862 167 DDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARY 246 (763)
T ss_pred cCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHH
Confidence 555677655544433 335667888999999999999999999999999 79998832 333333
Q ss_pred hhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626 116 ACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 176 (542)
Q Consensus 116 A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~ 176 (542)
|... ...++.++++++|++|-+++ +++++++.++.|.+.-++.-.+....|+..+...
T Consensus 247 a~~~--~~~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~ 304 (763)
T PRK12862 247 AQKT--DARTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALANPTPEILPEEAR 304 (763)
T ss_pred hhhc--ccCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHH
Confidence 4432 23578999999999999987 7899999999999888888877766677766443
No 248
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.16 E-value=0.0018 Score=67.37 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=72.6
Q ss_pred cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhh-hh----cCCce---eeCHHHHhcCCcEEEEcCC-Ccc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQ-AC----MDGFS---VVKLNEVIRTVDIVVTATG-NKN 144 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~-A~----~~G~~---v~~l~e~l~~aDvVi~atG-~~~ 144 (542)
.-++++|+|+|..|+..++.+.. +.. +|.+|++++.++.. +. ..|.+ +.+.++++.+||||++||. ..+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P 195 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP 195 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc
Confidence 36899999999999877777654 455 89999999987543 11 12433 2368899999999999876 446
Q ss_pred cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR 176 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~ 176 (542)
++.. +.+|+|..+.-+|.+. .|++.+-+.
T Consensus 196 ~~~~---~~l~pg~hV~aiGs~~p~~~El~~~~l~ 227 (301)
T PRK06407 196 IFNR---KYLGDEYHVNLAGSNYPNRREAEHSVLN 227 (301)
T ss_pred EecH---HHcCCCceEEecCCCCCCcccCCHHHHH
Confidence 6654 3578999999999873 677766554
No 249
>PRK12861 malic enzyme; Reviewed
Probab=97.16 E-value=0.0024 Score=73.83 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=91.8
Q ss_pred HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeC------------Cchhhhh
Q psy4626 54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEI------------DPICALQ 115 (542)
Q Consensus 54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~------------dp~r~~~ 115 (542)
|..+||+-.+..++. +.++..+..-++++.|+|.-|.+++..+...|+ +++++|. ++.+...
T Consensus 163 DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~ 242 (764)
T PRK12861 163 DDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERF 242 (764)
T ss_pred cccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHH
Confidence 556677755544443 345667888999999999999999999999999 7999883 3444444
Q ss_pred hhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626 116 ACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 176 (542)
Q Consensus 116 A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~ 176 (542)
|... ...++.++++++|++|-+++ +++++++.++.|.+.-++.-.+....|+..+...
T Consensus 243 a~~~--~~~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~ 300 (764)
T PRK12861 243 AQET--DARTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALANPTPEIFPELAH 300 (764)
T ss_pred Hhhc--CCCCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECCCCCccCCHHHHH
Confidence 4432 23578999999999999986 7899999999998888888777766677666443
No 250
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.14 E-value=0.00091 Score=68.54 Aligned_cols=88 Identities=22% Similarity=0.225 Sum_probs=62.9
Q ss_pred CcEEEEEcCChhHHHHHHHHHh--CCCEEE-EEeCCchhhhh-hhcCCc--eeeCHHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKG--LGCVIY-ITEIDPICALQ-ACMDGF--SVVKLNEVIRTVDIVVTATGNKNVVTREH 150 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~--~Ga~Vi-v~d~dp~r~~~-A~~~G~--~v~~l~e~l~~aDvVi~atG~~~lI~~e~ 150 (542)
..+|+|+|+|.||+.+++.+.. .|+++. ++|+++.+... +...|. .+.++++++.++|+|++|+++.. ...-.
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~-h~e~~ 84 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV-LRAIV 84 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH-HHHHH
Confidence 4689999999999999999986 478776 78988877543 333342 24578888889999999987642 22223
Q ss_pred HhccCCCeEEEeccC
Q psy4626 151 MDKMKNGCVVCNMGH 165 (542)
Q Consensus 151 l~~mk~GailvnvG~ 165 (542)
...++.|.-++....
T Consensus 85 ~~aL~aGk~Vi~~s~ 99 (271)
T PRK13302 85 EPVLAAGKKAIVLSV 99 (271)
T ss_pred HHHHHcCCcEEEecc
Confidence 555677776665443
No 251
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=97.14 E-value=0.0027 Score=67.67 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcC-CceeeC------HHHHh---
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMD-GFSVVK------LNEVI--- 130 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~-G~~v~~------l~e~l--- 130 (542)
..|+++... ....|.+|+|.|.|.+|..+++.++..|+ +|++++.++.+...+... +..+++ ..+.+
T Consensus 172 ta~~~l~~~--~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 172 TGYHAAELA--EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL 249 (386)
T ss_pred hhHHHHhhc--cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH
Confidence 345555222 24578999999999999999999999998 699999888887766555 444332 11111
Q ss_pred ---cCCcEEEEcCCCc---------------------ccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 ---RTVDIVVTATGNK---------------------NVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 ---~~aDvVi~atG~~---------------------~lI~~e~l~~mk~GailvnvG~g 166 (542)
...|++++++|.. ..+ .+.++.+++++.++.+|..
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDAL-REAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHH-HHHHHHhccCCEEEEEcCC
Confidence 2689999998642 234 4678999999999999854
No 252
>PLN02858 fructose-bisphosphate aldolase
Probab=97.14 E-value=0.0013 Score=81.02 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=72.7
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCC------HH
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------RE 149 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~------~e 149 (542)
.++|++||+|.+|..+|..|...|.+|++||+++.+.......|.. ..++.++++.+|+||.|..++..+. ..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 4789999999999999999999999999999999876655555654 4567788899999999876443221 23
Q ss_pred HHhccCCCeEEEeccCCC
Q psy4626 150 HMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 150 ~l~~mk~GailvnvG~g~ 167 (542)
.++.+++|.++++++..+
T Consensus 404 ~~~~l~~g~ivVd~STvs 421 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVS 421 (1378)
T ss_pred HHhcCCCCCEEEECCCCC
Confidence 466789999999988764
No 253
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.13 E-value=0.00097 Score=71.38 Aligned_cols=78 Identities=17% Similarity=0.356 Sum_probs=61.0
Q ss_pred cCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCc---ccCCHHHH
Q psy4626 76 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHM 151 (542)
Q Consensus 76 ~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~---~lI~~e~l 151 (542)
..++|+|+| .|.+|..+|..++..|..|+++|+++. .+.++++.++|+||.|+... .++ .+ +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~~~~aDlVilavP~~~~~~~~-~~-l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDILADAGMVIVSVPIHLTEEVI-AR-L 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHHHhcCCEEEEeCcHHHHHHHH-HH-H
Confidence 347999999 999999999999999999999997642 24456778999999997532 223 22 3
Q ss_pred hccCCCeEEEeccCCC
Q psy4626 152 DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 152 ~~mk~GailvnvG~g~ 167 (542)
..+++|++++.+|+-.
T Consensus 163 ~~l~~~~iv~Dv~SvK 178 (374)
T PRK11199 163 PPLPEDCILVDLTSVK 178 (374)
T ss_pred hCCCCCcEEEECCCcc
Confidence 3378999999998754
No 254
>PRK06046 alanine dehydrogenase; Validated
Probab=97.13 E-value=0.0021 Score=67.57 Aligned_cols=96 Identities=23% Similarity=0.258 Sum_probs=70.8
Q ss_pred CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhhhc-----CCce---eeCHHHHhcCCcEEEEcCCC-ccc
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGN-KNV 145 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A~~-----~G~~---v~~l~e~l~~aDvVi~atG~-~~l 145 (542)
-++++|+|+|..|+..+..+. ..+. +|.++++++.++..... .+.. +.+.++++. +|+|++||.+ .++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P~ 207 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKPV 207 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCcE
Confidence 579999999999998888886 4566 78889999877654221 2432 235677777 9999998864 456
Q ss_pred CCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626 146 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR 176 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g~---~eid~~aL~ 176 (542)
+.. +.+|+|+.+..+|... .|+|.+.+.
T Consensus 208 ~~~---~~l~~g~hV~~iGs~~p~~~El~~~~~~ 238 (326)
T PRK06046 208 VKA---EWIKEGTHINAIGADAPGKQELDPEILL 238 (326)
T ss_pred ecH---HHcCCCCEEEecCCCCCccccCCHHHHh
Confidence 654 4579999999999763 678866554
No 255
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.13 E-value=0.0015 Score=57.24 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=58.3
Q ss_pred EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC-----H---HH-HhcCCcEEEEcCCCccc--CCH
Q psy4626 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK-----L---NE-VIRTVDIVVTATGNKNV--VTR 148 (542)
Q Consensus 80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~-----l---~e-~l~~aDvVi~atG~~~l--I~~ 148 (542)
++|+|+|.+|+.+++.|+..+.+|+++|.||.+...+...|+.++. . ++ -+.++|.++.++++... .-.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 6899999999999999999777999999999988888888877542 1 12 14789988888764321 112
Q ss_pred HHHhccCCCeEEEe
Q psy4626 149 EHMDKMKNGCVVCN 162 (542)
Q Consensus 149 e~l~~mk~Gailvn 162 (542)
..++.+-+...++-
T Consensus 81 ~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 81 LLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHTTTSEEEE
T ss_pred HHHHHHCCCCeEEE
Confidence 23444445555543
No 256
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.13 E-value=0.0011 Score=76.58 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=67.8
Q ss_pred cEEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhhhhhcCCce---eeCHHHHhcCCcEEEEcCCCcccCC--HHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKNVVT--REH 150 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~~~lI~--~e~ 150 (542)
++|+|+|+|.+|..+++.++..| .+|+++|+++.+...+...|.. ..+.++++.++|+||.|+....+.. .+.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l 83 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADL 83 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence 68999999999999999999988 4899999998887666666753 3356677889999999986432211 122
Q ss_pred HhccCCCeEEEeccCCC
Q psy4626 151 MDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 151 l~~mk~GailvnvG~g~ 167 (542)
-..++++.++++++.-.
T Consensus 84 ~~~~~~~~ii~d~~svk 100 (735)
T PRK14806 84 KPLLSEHAIVTDVGSTK 100 (735)
T ss_pred HHhcCCCcEEEEcCCCc
Confidence 23457888888888653
No 257
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.11 E-value=0.0032 Score=68.69 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEE-EEeCC----------chhh---hhhh-----
Q psy4626 57 YMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICA---LQAC----- 117 (542)
Q Consensus 57 ~g~~~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Vi-v~d~d----------p~r~---~~A~----- 117 (542)
||+-..+-+++.. .+..+.|+||+|-|+|++|..+|+.|..+|++|+ +.|.+ +.++ .+.+
T Consensus 218 ~Gv~~~~~~~l~~-~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g 296 (454)
T PTZ00079 218 YGLVYFVLEVLKK-LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRG 296 (454)
T ss_pred HHHHHHHHHHHHH-cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCC
Confidence 3443333333333 3567899999999999999999999999999999 77877 3222 0000
Q ss_pred --------cCCceeeCHHHHh-cCCcEEEEcCCCcccCCHHHHhcc-CCCeEEEeccC
Q psy4626 118 --------MDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGH 165 (542)
Q Consensus 118 --------~~G~~v~~l~e~l-~~aDvVi~atG~~~lI~~e~l~~m-k~GailvnvG~ 165 (542)
..|...++.++.+ ..|||++-|. +.+.|+.+....+ +.++.+|--|.
T Consensus 297 ~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA-~~n~I~~~~a~~l~~~~ak~V~EgA 353 (454)
T PTZ00079 297 RLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCA-TQNEINLEDAKLLIKNGCKLVAEGA 353 (454)
T ss_pred cHHhhhhccCCcEEeCCcCcccCCccEEEecc-ccccCCHHHHHHHHHcCCeEEEecC
Confidence 0133344444444 5799999875 4568887777766 77787775443
No 258
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.11 E-value=0.0016 Score=70.75 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=63.0
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc-ee--eCHHHH---------------hcCCcEEEEc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SV--VKLNEV---------------IRTVDIVVTA 139 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~-~v--~~l~e~---------------l~~aDvVi~a 139 (542)
++|+|+|.|.+|..+|..|+..|.+|+++|+++.+... ...|. +. ..++++ ++.+|+||.|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~ 82 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA 82 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence 58999999999999999999999999999999987654 23232 11 112222 2479999999
Q ss_pred CCCc---------ccCC---HHHHhccCCCeEEEeccCC
Q psy4626 140 TGNK---------NVVT---REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 140 tG~~---------~lI~---~e~l~~mk~GailvnvG~g 166 (542)
.+++ ..+. ......+++|.+++..+..
T Consensus 83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 8774 1121 2345567999999887664
No 259
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=97.10 E-value=0.0033 Score=64.62 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH------HHhcCCc
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN------EVIRTVD 134 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~------e~l~~aD 134 (542)
+.|+++.+. ....|.+|+|.|.|.+|+.+++.++.+|++|++++.++.+...+...|.. +.+.. ......|
T Consensus 150 ta~~~l~~~--~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d 227 (330)
T cd08245 150 TVYSALRDA--GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGAD 227 (330)
T ss_pred HHHHHHHhh--CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCC
Confidence 345555442 24578999999999999999999999999999999888776655555543 22211 1124689
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+++++.+....+ .+.++.|++++.++++|..
T Consensus 228 ~vi~~~~~~~~~-~~~~~~l~~~G~~i~~~~~ 258 (330)
T cd08245 228 VILVTVVSGAAA-EAALGGLRRGGRIVLVGLP 258 (330)
T ss_pred EEEECCCcHHHH-HHHHHhcccCCEEEEECCC
Confidence 999997765555 4789999999999998853
No 260
>KOG0067|consensus
Probab=97.10 E-value=0.00045 Score=72.59 Aligned_cols=92 Identities=20% Similarity=0.344 Sum_probs=73.7
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCCce-eeCHHHHhcCCcEEEEcC----CCcccCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVT 147 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~-v~~l~e~l~~aDvVi~at----G~~~lI~ 147 (542)
...|.+++++|+|++|+.++.++++||..|+-|| |+-.. .-...|.+ +-++++.+-++|.+.... -+.++++
T Consensus 175 ~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifyd--p~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin 252 (435)
T KOG0067|consen 175 RIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYD--PYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELIN 252 (435)
T ss_pred cccccceeeeccccccceehhhhhcccceeeeec--chhhhhhhhhcccceecccchhhhhccceeeecccCcccccccc
Confidence 4679999999999999999999999999999997 54322 12334554 446788888889888843 3678888
Q ss_pred HHHHhccCCCeEEEeccCCC
Q psy4626 148 REHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~g~ 167 (542)
.-.+..|+.|+.++|++++.
T Consensus 253 ~~tikqm~qGaflvnta~gg 272 (435)
T KOG0067|consen 253 DFTIKQMRQGAFLVNTARGG 272 (435)
T ss_pred cccceeecccceEeeecccc
Confidence 77789999999999999985
No 261
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=97.09 E-value=0.0055 Score=62.96 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=68.9
Q ss_pred CcEEEEEc-CChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeC----HHHHh-----cCCcEEEEcCCCcc
Q psy4626 77 GKQVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVK----LNEVI-----RTVDIVVTATGNKN 144 (542)
Q Consensus 77 GktVvViG-~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~----l~e~l-----~~aDvVi~atG~~~ 144 (542)
|.+|+|.| .|.+|+.+++.++..| ++|++++.++.+...+...|.. +++ ..+.+ ++.|++++++|...
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~ 229 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQ 229 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHH
Confidence 89999999 5999999999999999 9999998888776666556653 221 21111 46899999988644
Q ss_pred cCCHHHHhccCCCeEEEeccCC
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g 166 (542)
.+ ...++.+++++.++..|..
T Consensus 230 ~~-~~~~~~l~~~g~~v~~g~~ 250 (336)
T cd08252 230 HW-DAMAELIAPQGHICLIVDP 250 (336)
T ss_pred HH-HHHHHHhcCCCEEEEecCC
Confidence 55 3689999999999998854
No 262
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=97.07 E-value=0.0027 Score=66.12 Aligned_cols=102 Identities=24% Similarity=0.271 Sum_probs=74.8
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hhc
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VIR 131 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l~ 131 (542)
.|+++.+.. ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.. +++ ..+ ...
T Consensus 163 A~~~~~~~~-~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 241 (350)
T cd08240 163 AYSAVKKLM-PLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAG 241 (350)
T ss_pred HHHHHHhcc-cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhC
Confidence 345554432 22378999999999999999999999999 788998888777666556643 222 111 122
Q ss_pred -CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 132 -TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 132 -~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|++++++|....+. +.++.|++++.++.+|..
T Consensus 242 ~~~d~vid~~g~~~~~~-~~~~~l~~~g~~v~~g~~ 276 (350)
T cd08240 242 GGVDAVIDFVNNSATAS-LAFDILAKGGKLVLVGLF 276 (350)
T ss_pred CCCcEEEECCCCHHHHH-HHHHHhhcCCeEEEECCC
Confidence 5899999998655554 789999999999988754
No 263
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.07 E-value=0.0026 Score=65.88 Aligned_cols=89 Identities=20% Similarity=0.285 Sum_probs=67.6
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-C-----HHH--Hh--cCCcEEEEcCCC
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K-----LNE--VI--RTVDIVVTATGN 142 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~-----l~e--~l--~~aDvVi~atG~ 142 (542)
...|++|+|.|. |.+|..+++.++.+|++|+++..+. +...+...|...+ + ..+ .. ++.|+++++.|.
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 253 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG 253 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH
Confidence 457999999999 9999999999999999998887554 5555555665321 1 111 11 469999999987
Q ss_pred cccCCHHHHhccCCCeEEEeccC
Q psy4626 143 KNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 143 ~~lI~~e~l~~mk~GailvnvG~ 165 (542)
. .+ .+.++.+++++.++++|.
T Consensus 254 ~-~~-~~~~~~l~~~G~~v~~g~ 274 (350)
T cd08274 254 P-LF-PDLLRLLRPGGRYVTAGA 274 (350)
T ss_pred H-HH-HHHHHHhccCCEEEEecc
Confidence 4 34 368999999999998874
No 264
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.07 E-value=0.0016 Score=72.00 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=55.5
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKN 144 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~ 144 (542)
..|++|+|+|+|++|+.+++.|+..|++|+++|.++.+...+...|+.+.. ..+.+.++|+||.++|-+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~ 82 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRP 82 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCC
Confidence 478999999999999999999999999999999776654444455765542 2345678999999988643
No 265
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=97.06 E-value=0.0059 Score=62.28 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=67.6
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HH----HHh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LN----EVI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l--~~aDvVi~at 140 (542)
...|.+|+|.|. |.+|..+++.++.+|++|+++..++.+.......|.. +.+ .. +.. ++.|+|++++
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~ 216 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSV 216 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECC
Confidence 457999999986 9999999999999999998886555554444445653 221 11 122 3699999999
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.. .+ .+.++.+++++.++.+|..
T Consensus 217 g~~-~~-~~~~~~l~~~g~~v~~g~~ 240 (324)
T cd08292 217 GGK-LA-GELLSLLGEGGTLVSFGSM 240 (324)
T ss_pred CCh-hH-HHHHHhhcCCcEEEEEecC
Confidence 874 44 4789999999999998853
No 266
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.06 E-value=0.0011 Score=62.10 Aligned_cols=87 Identities=17% Similarity=0.260 Sum_probs=58.3
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------CCce-------eeCHHHHhcCCcEEEEcCCCc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGFS-------VVKLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------~G~~-------v~~l~e~l~~aDvVi~atG~~ 143 (542)
+|.|+|+|..|..+|..+...|-+|.+|.+++.....-.. .+.. ..+++++++++|+|+.++-+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 5899999999999999999999999999998754321111 1111 235778899999999987543
Q ss_pred c---cCCHHHHhccCCCeEEEeccCC
Q psy4626 144 N---VVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 144 ~---lI~~e~l~~mk~GailvnvG~g 166 (542)
. ++ .+....++++..++++..|
T Consensus 81 ~~~~~~-~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 AHREVL-EQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp GHHHHH-HHHTTTSHTT-EEEETS-S
T ss_pred HHHHHH-HHHhhccCCCCEEEEecCC
Confidence 2 22 2333445678888887755
No 267
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.06 E-value=0.0042 Score=63.96 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcC-ccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhh-hcCC----ceeeC----HHHH
Q psy4626 61 ESIIDSLKRSTD-VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDG----FSVVK----LNEV 129 (542)
Q Consensus 61 ~s~~~ai~r~~~-~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A-~~~G----~~v~~----l~e~ 129 (542)
.+++.++++... ..+.|++|+|+|+|-.|+.++..|...|+ +|+++++++.|+..- ...+ ..... +.+.
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~ 187 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAI 187 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhc
Confidence 445566655321 14679999999999999999999999998 899999998876432 2211 11111 1244
Q ss_pred hcCCcEEEEcCCC
Q psy4626 130 IRTVDIVVTATGN 142 (542)
Q Consensus 130 l~~aDvVi~atG~ 142 (542)
+.++|+||.||..
T Consensus 188 ~~~~DiVInaTp~ 200 (282)
T TIGR01809 188 EKAAEVLVSTVPA 200 (282)
T ss_pred ccCCCEEEECCCC
Confidence 5789999999854
No 268
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=97.05 E-value=0.0033 Score=65.54 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=70.6
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.+ +++ ..+ .. .++|++++++
T Consensus 172 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~ 251 (350)
T cd08256 172 IKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEAT 251 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 45799999999999999999999999985 67788888777666666654 222 111 22 3589999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
|....+. +.++.+++++.++++|...
T Consensus 252 g~~~~~~-~~~~~l~~~G~~v~~g~~~ 277 (350)
T cd08256 252 GHPSAVE-QGLNMIRKLGRFVEFSVFG 277 (350)
T ss_pred CChHHHH-HHHHHhhcCCEEEEEccCC
Confidence 8644554 6799999999999988543
No 269
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.04 E-value=0.0021 Score=67.69 Aligned_cols=83 Identities=24% Similarity=0.295 Sum_probs=60.6
Q ss_pred EEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCchhhh-hhhcCCcee-------------------eCHHHHhcCCcEEE
Q psy4626 80 VVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICAL-QACMDGFSV-------------------VKLNEVIRTVDIVV 137 (542)
Q Consensus 80 VvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~-~A~~~G~~v-------------------~~l~e~l~~aDvVi 137 (542)
|+|+|||.||+.+++.+... +++|+. .|.+|.+.. .|...|++. -++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999997643 576554 677776432 233334332 13667788999999
Q ss_pred EcCC-CcccCCHHHHhccCCCeEEEe
Q psy4626 138 TATG-NKNVVTREHMDKMKNGCVVCN 162 (542)
Q Consensus 138 ~atG-~~~lI~~e~l~~mk~Gailvn 162 (542)
+||+ ..+..+++.+..++.+++++.
T Consensus 81 e~Tp~~~~~~na~~~~~~GakaVl~~ 106 (333)
T TIGR01546 81 DATPGGIGAKNKPLYEKAGVKAIFQG 106 (333)
T ss_pred ECCCCCCChhhHHHHHhCCcCEEEEC
Confidence 9987 567788888999999887765
No 270
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.04 E-value=0.0017 Score=71.56 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=67.0
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----CCce---eeCHHHHhc---CCcEEEEcCC----Cc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS---VVKLNEVIR---TVDIVVTATG----NK 143 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----~G~~---v~~l~e~l~---~aDvVi~atG----~~ 143 (542)
.+|+|+|.|.+|..+|+.|...|.+|.+||+++.+...... .|+. ..++++++. .+|+|+.+.- ..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 37999999999999999999999999999999987543322 2432 346777764 5898877632 22
Q ss_pred ccCCHHHHhccCCCeEEEeccCCC
Q psy4626 144 NVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 144 ~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.++ .+.+..+++|.++++.|.+.
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCC
Confidence 344 35667789999999999774
No 271
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=97.03 E-value=0.005 Score=63.15 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=74.8
Q ss_pred HHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH---Hh--cC
Q psy4626 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE---VI--RT 132 (542)
Q Consensus 64 ~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e---~l--~~ 132 (542)
++++.+.. ....|.+|+|.|.|.+|..+++.++.+|++|++++.++.+...+...|.. +.+ ..+ .. +.
T Consensus 154 ~~~l~~~~-~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 154 YHAVVRAG-EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred HHHHHhcc-CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCC
Confidence 44443332 24578999999999999999999999999999999888776655555543 111 111 11 46
Q ss_pred CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.|+++++.|....+ .+.++.+++++.++..|..+
T Consensus 233 ~D~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~ 266 (338)
T cd08254 233 FDVIFDFVGTQPTF-EDAQKAVKPGGRIVVVGLGR 266 (338)
T ss_pred ceEEEECCCCHHHH-HHHHHHhhcCCEEEEECCCC
Confidence 89999998865555 36889999999999988643
No 272
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0033 Score=64.31 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=68.7
Q ss_pred cEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCchhhh-hhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPICAL-QACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~r~~-~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l 151 (542)
.+++++|+|++|..++.-+...| .+|+++++++.++. .+...|.. ..+.+++...+|+||.|. .|..+ .+.+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~-~~vl 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDL-EEVL 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhH-HHHH
Confidence 47999999999999999999999 48999999998775 55566665 344567788999999996 33344 4677
Q ss_pred hccC---CCeEEEeccCC
Q psy4626 152 DKMK---NGCVVCNMGHS 166 (542)
Q Consensus 152 ~~mk---~GailvnvG~g 166 (542)
+.++ ++..++++.-|
T Consensus 80 ~~l~~~~~~~lvISiaAG 97 (266)
T COG0345 80 SKLKPLTKDKLVISIAAG 97 (266)
T ss_pred HHhhcccCCCEEEEEeCC
Confidence 7776 68888888766
No 273
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=97.02 E-value=0.0029 Score=65.61 Aligned_cols=92 Identities=23% Similarity=0.256 Sum_probs=70.6
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCCce-eeCH---------HHHh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVKL---------NEVI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G~~-v~~l---------~e~l--~~aDvVi~at 140 (542)
...|.+|+|.|.|.+|..+++.++.+| .+|++++.++.+...+...|.+ +++. .+.. ...|++++++
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAV 243 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECC
Confidence 357999999999999999999999999 7999998888776655556653 2221 1122 3699999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|....+ ...++.+++++.+++.|..
T Consensus 244 g~~~~~-~~~~~~l~~~g~~v~~g~~ 268 (345)
T cd08286 244 GIPATF-ELCQELVAPGGHIANVGVH 268 (345)
T ss_pred CCHHHH-HHHHHhccCCcEEEEeccc
Confidence 865555 3667899999999998854
No 274
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=97.02 E-value=0.0015 Score=67.17 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=71.0
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCHH-------HH--hcCCcEEEEcCCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKLN-------EV--IRTVDIVVTATGN 142 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~--l~~aDvVi~atG~ 142 (542)
...|.+++|.|.|.+|+.+++.++..|++ |++++.++.+...+...|.. +++.. .. -+++|+++++.|.
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~ 236 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGV 236 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCC
Confidence 45789999999999999999999999997 88888888776655555543 22211 11 1568999999876
Q ss_pred cccCCHHHHhccCCCeEEEeccCCC
Q psy4626 143 KNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 143 ~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
...+ .+.++.|++++.++.+|..+
T Consensus 237 ~~~~-~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 237 PKTL-EQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred hHHH-HHHHHHHhcCCEEEEEecCC
Confidence 5555 46789999999999988654
No 275
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.02 E-value=0.0016 Score=65.78 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=61.3
Q ss_pred cEEEEEcCChhHHHHHHHHHhCC---CEEEEEeCCchhhhhhhc-CCcee-eCHHHHhcCCcEEEEcCCCcccCCHHHHh
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLG---CVIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD 152 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~G---a~Viv~d~dp~r~~~A~~-~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~ 152 (542)
.+++|||+|.+|..++..+...| .+|.++++++.+...... .|..+ .+.++++..+|+||.|+.... + .+.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~-~~v~~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-M-EEVLS 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-H-HHHHH
Confidence 47999999999999999999888 689999998876654443 36554 345667889999999975433 3 24444
Q ss_pred ccCC--CeEEEeccCC
Q psy4626 153 KMKN--GCVVCNMGHS 166 (542)
Q Consensus 153 ~mk~--GailvnvG~g 166 (542)
.+++ +..++++..+
T Consensus 81 ~l~~~~~~~vvs~~~g 96 (267)
T PRK11880 81 ELKGQLDKLVVSIAAG 96 (267)
T ss_pred HHHhhcCCEEEEecCC
Confidence 4443 3456655443
No 276
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=97.02 E-value=0.0032 Score=65.01 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHh-CCCEEEEEeCCchhhhhhhcCCcee-eCH------HH----
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSV-VKL------NE---- 128 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~-~Ga~Viv~d~dp~r~~~A~~~G~~v-~~l------~e---- 128 (542)
.+.|+++..+ ....|.+|+|.|.|.+|..+++.++. +|++|++++.++.+...+...|.+. ++. .+
T Consensus 149 ~ta~~~~~~~--~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~ 226 (338)
T PRK09422 149 VTTYKAIKVS--GIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQE 226 (338)
T ss_pred hHHHHHHHhc--CCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHH
Confidence 3345565333 34579999999999999999999998 5999999998888877776666532 211 11
Q ss_pred HhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 129 ~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
...+.|+++.+++....+ .+.++.+++++.++.+|..
T Consensus 227 ~~~~~d~vi~~~~~~~~~-~~~~~~l~~~G~~v~~g~~ 263 (338)
T PRK09422 227 KTGGAHAAVVTAVAKAAF-NQAVDAVRAGGRVVAVGLP 263 (338)
T ss_pred hcCCCcEEEEeCCCHHHH-HHHHHhccCCCEEEEEeeC
Confidence 223578566655555555 4789999999999998854
No 277
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.01 E-value=0.0038 Score=66.26 Aligned_cols=97 Identities=27% Similarity=0.408 Sum_probs=71.4
Q ss_pred CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhh-h---hcCCce---eeCHHHHhcCCcEEEEcCCCc---c
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQ-A---CMDGFS---VVKLNEVIRTVDIVVTATGNK---N 144 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~-A---~~~G~~---v~~l~e~l~~aDvVi~atG~~---~ 144 (542)
-++++|||+|..++..++.+. -+.. +|.+|++++.++.. + ...++. +.+.++++.+||||++||.+. +
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P 208 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT 208 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence 578999999999987766554 4555 89999999987542 1 122433 346789999999999988643 5
Q ss_pred cCCHHHHhccCCCeEEEeccCCC---cccChHhhc
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLR 176 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~ 176 (542)
++.. +.+|+|+.+..+|.+. .|+|.+-+.
T Consensus 209 vl~~---~~lkpG~hV~aIGs~~p~~~Eld~~~l~ 240 (346)
T PRK07589 209 ILTD---DMVEPGMHINAVGGDCPGKTELHPDILR 240 (346)
T ss_pred eecH---HHcCCCcEEEecCCCCCCcccCCHHHHh
Confidence 6654 4579999999999763 677766554
No 278
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.01 E-value=0.0023 Score=61.92 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=55.4
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---------------------e-eCHHHHhcCCcE
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---------------------V-VKLNEVIRTVDI 135 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---------------------v-~~l~e~l~~aDv 135 (542)
++|.|+|.|.+|...|..+...|.+|+.+|+|+.+... ...|.. . .+.+++++.+|+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence 47999999999999999999999999999999986543 222321 1 123455678999
Q ss_pred EEEcCCCcccCC------------HHHHhccCCCeEEEeccCC
Q psy4626 136 VVTATGNKNVVT------------REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 136 Vi~atG~~~lI~------------~e~l~~mk~GailvnvG~g 166 (542)
+|.|.+++.--+ .+....++++.+++.-+.-
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 999987653211 2334556889998876654
No 279
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=97.01 E-value=0.0033 Score=66.56 Aligned_cols=101 Identities=22% Similarity=0.161 Sum_probs=74.1
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeC-----HHHHh-----c
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK-----LNEVI-----R 131 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~-----l~e~l-----~ 131 (542)
.|+++..+ ....|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|...++ ..+.+ .
T Consensus 165 a~~a~~~~--~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~ 242 (375)
T cd08282 165 GWHGLELA--GVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPG 242 (375)
T ss_pred HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCC
Confidence 35555332 34579999999999999999999999998 899999888887766667753322 11111 2
Q ss_pred CCcEEEEcCCCcc-----------cCCHHHHhccCCCeEEEeccCC
Q psy4626 132 TVDIVVTATGNKN-----------VVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 132 ~aDvVi~atG~~~-----------lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|++++|+|... .++ +.++.+++++.++.+|..
T Consensus 243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~g~~ 287 (375)
T cd08282 243 GVDRAVDCVGYEARDRGGEAQPNLVLN-QLIRVTRPGGGIGIVGVY 287 (375)
T ss_pred CCCEEEECCCCcccccccccchHHHHH-HHHHHhhcCcEEEEEecc
Confidence 5899999988642 243 678899999999877753
No 280
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=97.01 E-value=0.0031 Score=66.56 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=70.7
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-------HHHHh-----cCCcEEEEc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-------LNEVI-----RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-------l~e~l-----~~aDvVi~a 139 (542)
...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++ ..+.+ ...|+++++
T Consensus 181 ~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~ 260 (365)
T cd05279 181 VTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEV 260 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEEC
Confidence 45799999999999999999999999995 77888778777666666653 222 11111 368999999
Q ss_pred CCCcccCCHHHHhccC-CCeEEEeccCC
Q psy4626 140 TGNKNVVTREHMDKMK-NGCVVCNMGHS 166 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk-~GailvnvG~g 166 (542)
+|....+. +.++.++ +++.++.+|..
T Consensus 261 ~g~~~~~~-~~~~~l~~~~G~~v~~g~~ 287 (365)
T cd05279 261 IGSADTLK-QALDATRLGGGTSVVVGVP 287 (365)
T ss_pred CCCHHHHH-HHHHHhccCCCEEEEEecC
Confidence 98655664 6789998 99999988854
No 281
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.98 E-value=0.0073 Score=61.09 Aligned_cols=100 Identities=24% Similarity=0.307 Sum_probs=73.8
Q ss_pred HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----CHHH-H--h-cCC
Q psy4626 64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNE-V--I-RTV 133 (542)
Q Consensus 64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~l~e-~--l-~~a 133 (542)
++++.+.. ....|++|+|.|. |.+|..+++.++..|++|+++..++.+...+...|+..+ ++.+ . + ++.
T Consensus 131 ~~~l~~~~-~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~ 209 (320)
T cd08243 131 WGSLFRSL-GLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGF 209 (320)
T ss_pred HHHHHHhc-CCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHhCCCc
Confidence 44443332 2457899999997 999999999999999999999888877666655665321 1111 1 1 469
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|+++++.|.. .+ .+.++.+++++.++.+|..
T Consensus 210 d~vl~~~~~~-~~-~~~~~~l~~~g~~v~~g~~ 240 (320)
T cd08243 210 DKVLELVGTA-TL-KDSLRHLRPGGIVCMTGLL 240 (320)
T ss_pred eEEEECCChH-HH-HHHHHHhccCCEEEEEccC
Confidence 9999998863 44 4688999999999998853
No 282
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.98 E-value=0.0028 Score=65.34 Aligned_cols=79 Identities=24% Similarity=0.245 Sum_probs=56.5
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhh-hcC----C-ceee---CHHHHh
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMD----G-FSVV---KLNEVI 130 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A-~~~----G-~~v~---~l~e~l 130 (542)
.+++.++++. ...+.+++|+|+|+|..|+.++..|...|+ +|+++++++.++... ... . ..+. ++.+.+
T Consensus 112 ~G~~~~l~~~-~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~ 190 (284)
T PRK12549 112 SGFAESFRRG-LPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAAL 190 (284)
T ss_pred HHHHHHHHhh-ccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhh
Confidence 4445555432 224678999999999999999999999998 899999998876532 111 1 1222 233456
Q ss_pred cCCcEEEEcC
Q psy4626 131 RTVDIVVTAT 140 (542)
Q Consensus 131 ~~aDvVi~at 140 (542)
.++|+||+||
T Consensus 191 ~~aDiVInaT 200 (284)
T PRK12549 191 AAADGLVHAT 200 (284)
T ss_pred CCCCEEEECC
Confidence 7899999986
No 283
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.97 E-value=0.0054 Score=68.17 Aligned_cols=238 Identities=18% Similarity=0.179 Sum_probs=117.4
Q ss_pred HHHHHHHhCCCEEEEEeC----CchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 91 GCCQSLKGLGCVIYITEI----DPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 91 ~vA~~l~~~Ga~Viv~d~----dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
..++.|...|.+|+|=.- .-+.-.+....|+.+.+-++++ ++|+|+-... + ..+.++.||+|..++..-+.
T Consensus 21 ~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~--P--~~~e~~~l~~g~~li~~l~p 95 (509)
T PRK09424 21 KTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNA--P--SDDEIALLREGATLVSFIWP 95 (509)
T ss_pred HHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCC--C--CHHHHHhcCCCCEEEEEeCc
Confidence 456677888999877321 1111223345677776656777 6999986421 1 24679999999999876655
Q ss_pred C-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCC-----
Q psy4626 167 N-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPS----- 240 (542)
Q Consensus 167 ~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~----- 240 (542)
. +.-.++.+.++.++...-. . .| .+-..++++-|.. +--+.-..|. +...+.+...-
T Consensus 96 ~~~~~l~~~l~~~~it~ia~e----~--vp-----r~sraq~~d~lss----ma~IAGy~Av--~~aa~~~~~~~~g~~t 158 (509)
T PRK09424 96 AQNPELLEKLAARGVTVLAMD----A--VP-----RISRAQSLDALSS----MANIAGYRAV--IEAAHEFGRFFTGQIT 158 (509)
T ss_pred ccCHHHHHHHHHcCCEEEEee----c--cc-----ccccCCCcccccc----hhhhhHHHHH--HHHHHHhcccCCCcee
Confidence 3 3333555655555443221 0 01 0001122222221 1111111122 22222222100
Q ss_pred --CC-CCCccccCChhhHHHHHHhcCCcccc-----ccccccHHHHhhcCCC--CCCCCCCCccccCCeeeee-------
Q psy4626 241 --GR-YKSDVYLLPKKMDEYVASLHLPTFDA-----HLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVK------- 303 (542)
Q Consensus 241 --~~-~~~gv~~lp~~~d~~VA~l~L~~lg~-----~i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~------- 303 (542)
+. -+..|..+-.---=..|-..++.+|. .+..-..++++.||+. .+++-.. ...-+||.-..
T Consensus 159 aaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~-~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 159 AAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE-GGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred ccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc-cccccchhhhcchhHHHH
Confidence 00 11111111111011111111223332 2222235677778885 2454221 11223332111
Q ss_pred ----hhhhcccCcEEEEccCCCC-----ccCHhHHhcCCCCcEEEccCC---CCcccccc
Q psy4626 304 ----LNEVIRTVDIVVTATGNKN-----VVTREHMDKMKNGCVVCNMGH---SNTEIDVN 351 (542)
Q Consensus 304 ----~~~a~~~~d~~~t~tg~~~-----vi~~~~~~~mk~gail~n~gh---~~~Ei~~~ 351 (542)
+.+.++.+|++|+++|.+. .|+.+.++.||+|.+++..|. .++|++++
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~ 297 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVP 297 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccC
Confidence 1233467999999999744 779999999999999999985 33466665
No 284
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=96.96 E-value=0.0042 Score=62.92 Aligned_cols=92 Identities=21% Similarity=0.202 Sum_probs=70.5
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|.+|+|.|.|.+|..+++.++..|++ |+++..++.+...+...|.. +.+ +.+ .. .+.|+++++.
T Consensus 127 ~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~ 206 (312)
T cd08269 127 IRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAV 206 (312)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECC
Confidence 45799999999999999999999999998 99988777666555555653 221 211 22 4689999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|....+. ..++.|++++.++++|..
T Consensus 207 g~~~~~~-~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 207 GHQWPLD-LAGELVAERGRLVIFGYH 231 (312)
T ss_pred CCHHHHH-HHHHHhccCCEEEEEccC
Confidence 7655554 678999999999998854
No 285
>PLN02702 L-idonate 5-dehydrogenase
Probab=96.96 E-value=0.0031 Score=66.32 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=70.5
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCceee--------CHHHH---h-----cCCcEE
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV--------KLNEV---I-----RTVDIV 136 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~v~--------~l~e~---l-----~~aDvV 136 (542)
...|++|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.... +..+. + ...|+|
T Consensus 179 ~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 258 (364)
T PLN02702 179 IGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVS 258 (364)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEE
Confidence 35799999999999999999999999995 7888888777766666665421 11111 1 358999
Q ss_pred EEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 137 VTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 137 i~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++++|....+ .+.++.+++++.++.+|..
T Consensus 259 id~~g~~~~~-~~~~~~l~~~G~~v~~g~~ 287 (364)
T PLN02702 259 FDCVGFNKTM-STALEATRAGGKVCLVGMG 287 (364)
T ss_pred EECCCCHHHH-HHHHHHHhcCCEEEEEccC
Confidence 9999865555 4789999999999998853
No 286
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=96.95 E-value=0.0038 Score=66.73 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=69.9
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH-------------------------
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL------------------------- 126 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l------------------------- 126 (542)
...|.+|+|.|. |.+|+.+++.++.+|++|++++.++.+...+...|.. +++.
T Consensus 187 ~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (398)
T TIGR01751 187 VKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFK 266 (398)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcch
Confidence 457899999998 9999999999999999998888777776666666642 2211
Q ss_pred ------HHHh--cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 127 ------NEVI--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 127 ------~e~l--~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.+.. +++|++++|+|.. .+. ..++.+++++.++.+|..
T Consensus 267 ~~~~~~~~~~~~~g~d~vld~~g~~-~~~-~~~~~l~~~G~~v~~g~~ 312 (398)
T TIGR01751 267 RFGKRIRELTGGEDPDIVFEHPGRA-TFP-TSVFVCRRGGMVVICGGT 312 (398)
T ss_pred hHHHHHHHHcCCCCceEEEECCcHH-HHH-HHHHhhccCCEEEEEccc
Confidence 1111 3599999999863 453 689999999999999854
No 287
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=96.94 E-value=0.0057 Score=63.48 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=75.0
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH------HHHh----
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL------NEVI---- 130 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l------~e~l---- 130 (542)
..++++.+.. ....|++|+|.|.|.+|..+++.++.+|++|+++..++.+...+...|.+ +++. .+.+
T Consensus 152 ta~~~l~~~~-~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 230 (345)
T cd08260 152 TAFRALVHQA-RVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLT 230 (345)
T ss_pred HHHHHHHHcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHh
Confidence 3445543322 24578999999999999999999999999999998888776655556653 2221 1111
Q ss_pred -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
...|++++++|....+. +.++.+++++.++..|..
T Consensus 231 ~~~~d~vi~~~g~~~~~~-~~~~~l~~~g~~i~~g~~ 266 (345)
T cd08260 231 GGGAHVSVDALGIPETCR-NSVASLRKRGRHVQVGLT 266 (345)
T ss_pred CCCCCEEEEcCCCHHHHH-HHHHHhhcCCEEEEeCCc
Confidence 26999999988544453 678999999999998864
No 288
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.93 E-value=0.0021 Score=63.10 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=60.6
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-hhhcCC-ceee--CH-HHHhcCCcEEEEcCCCcccCC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDG-FSVV--KL-NEVIRTVDIVVTATGNKNVVT 147 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G-~~v~--~l-~e~l~~aDvVi~atG~~~lI~ 147 (542)
..+.|++|+|+|.|.+|...++.|...|++|++++.+..... .....+ .... .+ +..+.++|+||.||+++. +|
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-lN 84 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-VN 84 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH-HH
Confidence 357899999999999999999999999999999976543322 111222 2221 12 234689999999998754 44
Q ss_pred HHHHhccCCCeEEEecc
Q psy4626 148 REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG 164 (542)
.......+.+ .++|+.
T Consensus 85 ~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 85 EQVKEDLPEN-ALFNVI 100 (202)
T ss_pred HHHHHHHHhC-CcEEEC
Confidence 3333333444 577765
No 289
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=96.93 E-value=0.0026 Score=68.45 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=61.0
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc----------------CCcee---eCHHHHhcCCcEEEEc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----------------DGFSV---VKLNEVIRTVDIVVTA 139 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~----------------~G~~v---~~l~e~l~~aDvVi~a 139 (542)
+|+|+|.|.+|..+|..+. .|.+|+++|+|+.+...... .+... .+..+++.++|+||.|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997776 59999999999988654322 11111 2245667899999999
Q ss_pred CCCc-----ccCC----H---HHHhccCCCeEEEeccCC
Q psy4626 140 TGNK-----NVVT----R---EHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 140 tG~~-----~lI~----~---e~l~~mk~GailvnvG~g 166 (542)
++++ ...+ . +.+..+++|.+++..+.-
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv 119 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTV 119 (388)
T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence 8765 1111 0 223336889999877654
No 290
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.93 E-value=0.0044 Score=64.19 Aligned_cols=92 Identities=23% Similarity=0.226 Sum_probs=70.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH-H---h--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE-V---I--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e-~---l--~~aDvVi~at 140 (542)
...|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++ ..+ + . .+.|++++++
T Consensus 166 ~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~ 245 (345)
T cd08287 166 VRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECV 245 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECC
Confidence 45799999999999999999999999995 88888777666655666653 222 111 1 2 3699999999
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|....++ ..++.+++++.++..|..
T Consensus 246 g~~~~~~-~~~~~l~~~g~~v~~g~~ 270 (345)
T cd08287 246 GTQESME-QAIAIARPGGRVGYVGVP 270 (345)
T ss_pred CCHHHHH-HHHHhhccCCEEEEeccc
Confidence 8765664 678999999999988754
No 291
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=96.92 E-value=0.0045 Score=63.34 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=68.9
Q ss_pred cccCc-EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH-------HHh-cCCcEEEEcCCC
Q psy4626 74 MFGGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN-------EVI-RTVDIVVTATGN 142 (542)
Q Consensus 74 ~l~Gk-tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l-~~aDvVi~atG~ 142 (542)
...|. +|+|.|. |.+|..+++.++.+|++|+++..++.+...+...|.. +.+.+ ... ...|++++++|.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~ 221 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGG 221 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccH
Confidence 34687 9999998 9999999999999999999887777666555555653 22211 111 247999999987
Q ss_pred cccCCHHHHhccCCCeEEEeccCC
Q psy4626 143 KNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 143 ~~lI~~e~l~~mk~GailvnvG~g 166 (542)
. .+ .+.++.+++++.++..|..
T Consensus 222 ~-~~-~~~~~~l~~~G~~v~~g~~ 243 (323)
T TIGR02823 222 H-TL-ANVLAQLKYGGAVAACGLA 243 (323)
T ss_pred H-HH-HHHHHHhCCCCEEEEEccc
Confidence 5 34 3689999999999999854
No 292
>PRK07680 late competence protein ComER; Validated
Probab=96.92 E-value=0.0026 Score=64.82 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=61.9
Q ss_pred EEEEEcCChhHHHHHHHHHhCCC----EEEEEeCCchhhhhhhc--CCceee-CHHHHhcCCcEEEEcCCCcccCCHHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM--DGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga----~Viv~d~dp~r~~~A~~--~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l 151 (542)
+++|||+|.+|..++..+...|. +|+++++++.+...... .|.... +..+++..+|+||.|+-.. .+ .+.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~-~~-~~vl 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPL-DI-YPLL 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHH-HH-HHHH
Confidence 68999999999999999988883 79999998876543322 255543 5667788999999987422 22 2333
Q ss_pred ----hccCCCeEEEeccCC
Q psy4626 152 ----DKMKNGCVVCNMGHS 166 (542)
Q Consensus 152 ----~~mk~GailvnvG~g 166 (542)
..++++..++.+..+
T Consensus 80 ~~l~~~l~~~~~iis~~ag 98 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP 98 (273)
T ss_pred HHHHhhcCCCCEEEEECCC
Confidence 345677888887754
No 293
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=96.92 E-value=0.0079 Score=62.22 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=75.1
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HH----HHh
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LN----EVI 130 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l 130 (542)
+.|+++... ....|.+++|.|.|. +|..+++.++.+|++|+++..++.+...+...|+. +++ .. +..
T Consensus 153 ta~~~~~~~--~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 230 (341)
T cd08297 153 TVYKALKKA--GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELT 230 (341)
T ss_pred HHHHHHHhc--CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHh
Confidence 345555443 245689999999976 99999999999999999999888777665556653 221 11 112
Q ss_pred --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++.|+++++.+....++ +.++.++++++++..|..
T Consensus 231 ~~~~vd~vl~~~~~~~~~~-~~~~~l~~~g~~v~~g~~ 267 (341)
T cd08297 231 GGGGAHAVVVTAVSAAAYE-QALDYLRPGGTLVCVGLP 267 (341)
T ss_pred cCCCCCEEEEcCCchHHHH-HHHHHhhcCCEEEEecCC
Confidence 46899999776555564 688999999999998853
No 294
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=96.91 E-value=0.0041 Score=67.78 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=65.2
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-----------------eeCHHHHhcCCcEEEEc
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----------------VVKLNEVIRTVDIVVTA 139 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-----------------v~~l~e~l~~aDvVi~a 139 (542)
-.+|+|+|.|.+|..+|..+.. |.+|+++|+++.+..... .|.. ..+..+.++++|++|.|
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 3689999999999999999876 799999999998765433 3322 23333467899999999
Q ss_pred CCCcc----------cCC--HHHHhccCCCeEEEeccCCC
Q psy4626 140 TGNKN----------VVT--REHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 140 tG~~~----------lI~--~e~l~~mk~GailvnvG~g~ 167 (542)
.+++. +.. ....+.+++|.++|..+.-.
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 88762 111 22346778999999877653
No 295
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.02 Score=59.44 Aligned_cols=217 Identities=19% Similarity=0.180 Sum_probs=128.2
Q ss_pred HHHHhCCCEEEEEeCC----chhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCc
Q psy4626 94 QSLKGLGCVIYITEID----PICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT 168 (542)
Q Consensus 94 ~~l~~~Ga~Viv~d~d----p~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~ 168 (542)
+.+...|-+|+|=.-- .+.-..-...|+..+ +.++++.++|.|+-+-. -+ +..-..+|.|.++..-=|-..
T Consensus 24 ~~l~~~GheVlVe~gAG~gsg~~D~~Y~~aGA~Iv~ta~~vw~~~dmvvKvKE---P~-~~EY~ylregqiLftyLHLA~ 99 (371)
T COG0686 24 RELVNHGHEVLVETGAGAGSGFDDDDYEAAGAKIVATAAEVWAEADMVVKVKE---PL-PSEYPYLREGQILFTYLHLAA 99 (371)
T ss_pred HHHHhCCcEEEEecCCcCCCCCChHHHHHcCCEEecCHHHhhcccceEEEecC---CC-hhhhhhhcCCcEEEEEeeecC
Confidence 4566778888774210 111122334577766 77888989999988742 22 357788999999987665422
Q ss_pred -ccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCC--CCCCC
Q psy4626 169 -EIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPS--GRYKS 245 (542)
Q Consensus 169 -eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~--~~~~~ 245 (542)
.-..+.|.+...+-. .|. . .-+++|.++.|+ ||-.+.-..+.|+=++ +|-+..+ +-+-.
T Consensus 100 ~~~lt~~l~~~gvtaI-------ayE-----T-V~~~~g~lPlLa----PMSeVAGrla~q~Ga~-~lek~~GG~Gvllg 161 (371)
T COG0686 100 SPELTEALLKSGVTAI-------AYE-----T-VQLPDGNLPLLA----PMSEVAGRLAAQAGAY-YLEKTNGGKGVLLG 161 (371)
T ss_pred ChHHHHHHHHcCcceE-------EEE-----E-EEcCCCCCcccc----hHHHHhhhHHHHHHHH-HHHhccCCceeEec
Confidence 222234443221111 121 1 234456666655 5555455555655433 3444332 22344
Q ss_pred ccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC------CCCCCCCCccccCCeeee-------ehhhhcccC
Q psy4626 246 DVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN------KAGPFKPSYYSMDGFSVV-------KLNEVIRTV 311 (542)
Q Consensus 246 gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~------e~~p~~a~ea~mdG~~v~-------~~~~a~~~~ 311 (542)
||+.+++. +...+|. -++.-.++-|-+||+. ..+-.|.++.. -|.+|+ .++++++.+
T Consensus 162 GvpGV~~~--------kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~-f~~rv~~~~st~~~iee~v~~a 232 (371)
T COG0686 162 GVPGVLPA--------KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL-FGGRVHTLYSTPSNIEEAVKKA 232 (371)
T ss_pred CCCCCCCc--------cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh-hCceeEEEEcCHHHHHHHhhhc
Confidence 55554443 3334444 4444457788899984 22356777774 344443 358999999
Q ss_pred cEEEE---ccC--CCCccCHhHHhcCCCCcEEEcc
Q psy4626 312 DIVVT---ATG--NKNVVTREHMDKMKNGCVVCNM 341 (542)
Q Consensus 312 d~~~t---~tg--~~~vi~~~~~~~mk~gail~n~ 341 (542)
|+||. .+| .+.++++++++.||+|++++.+
T Consensus 233 DlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 233 DLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred cEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 99998 444 5678999999999999999854
No 296
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.90 E-value=0.009 Score=61.46 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=80.8
Q ss_pred hhcCccccCcEEEEEcCChhHHHHHHHHHhC----CC-------EEEEEeCCc-----------hhhhhhhcCC-ceeeC
Q psy4626 69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEIDP-----------ICALQACMDG-FSVVK 125 (542)
Q Consensus 69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~----Ga-------~Viv~d~dp-----------~r~~~A~~~G-~~v~~ 125 (542)
+.++..+...+++|+|+|.-|.++|+.+... |+ +++++|... .+...+.... ....+
T Consensus 17 k~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~ 96 (279)
T cd05312 17 RITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKS 96 (279)
T ss_pred HHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCC
Confidence 3456778899999999999999999988876 87 788888652 2222333211 13357
Q ss_pred HHHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCc--ccChHhhc
Q psy4626 126 LNEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT--EIDVNSLR 176 (542)
Q Consensus 126 l~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~--eid~~aL~ 176 (542)
+.++++ ++|++|-+++..++++++.++.|. +.-+|.-.+.... |+..+...
T Consensus 97 L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~ 154 (279)
T cd05312 97 LLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAY 154 (279)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHH
Confidence 889988 999999999878899999999997 6777777776643 76665443
No 297
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.90 E-value=0.0055 Score=70.89 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=91.5
Q ss_pred HHhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCC------------chhhh
Q psy4626 53 FDNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICAL 114 (542)
Q Consensus 53 fd~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~d------------p~r~~ 114 (542)
.|..+||+-.+..++. +.++..+...+++|.|+|.-|.++++.+...|+ +++++|.. +.+..
T Consensus 158 ~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~ 237 (752)
T PRK07232 158 HDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAA 237 (752)
T ss_pred ccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHH
Confidence 3666777755555443 345667888999999999999999999999999 78888843 22222
Q ss_pred hhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626 115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 176 (542)
Q Consensus 115 ~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~ 176 (542)
.|.. ....++.++++++|++|-+++ +++++++.++.|.+.-++.-.+....|+..+...
T Consensus 238 ~a~~--~~~~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~ 296 (752)
T PRK07232 238 YAVD--TDARTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALANPDPEITPEEAK 296 (752)
T ss_pred Hhcc--CCCCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecCCCCccCCHHHHH
Confidence 3332 223478999999999999887 7899999999999888888877776677766443
No 298
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.88 E-value=0.0019 Score=72.69 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=33.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID 109 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d 109 (542)
...|++|+|+|.|++|..+|..|+.+|++|+++|..
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 357999999999999999999999999999999854
No 299
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.86 E-value=0.0031 Score=67.49 Aligned_cols=82 Identities=10% Similarity=0.141 Sum_probs=61.2
Q ss_pred cCcEEEEEcC-ChhHHHHHHHHHh-CCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCc---ccCCHHH
Q psy4626 76 GGKQVVLCGY-GEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREH 150 (542)
Q Consensus 76 ~GktVvViG~-G~IG~~vA~~l~~-~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~---~lI~~e~ 150 (542)
.-.+|+|||. |-||..+|+.++. .|.+|+.+|++.. ...++++.+.++|+||.|+-.. .++. +.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~v~~aDlVilavPv~~~~~~l~-~l 71 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATLLQRADVLIFSAPIRHTAALIE-EY 71 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHH-HH
Confidence 4569999999 9999999999996 4889999986311 1235667789999999997532 2232 22
Q ss_pred Hh---ccCCCeEEEeccCCCc
Q psy4626 151 MD---KMKNGCVVCNMGHSNT 168 (542)
Q Consensus 151 l~---~mk~GailvnvG~g~~ 168 (542)
.. .++++++++.+|+-..
T Consensus 72 ~~~~~~l~~~~iVtDVgSvK~ 92 (370)
T PRK08818 72 VALAGGRAAGQLWLDVTSIKQ 92 (370)
T ss_pred hhhhcCCCCCeEEEECCCCcH
Confidence 22 2789999999998753
No 300
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.86 E-value=0.0049 Score=62.22 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=61.0
Q ss_pred EEEEEcCChhHHHHHHHHHhCCC---EEEEEeCCchhhhhhhc-C-Ccee-eCHHHHhcCCcEEEEcCCCcccCCHHHHh
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPICALQACM-D-GFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD 152 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~dp~r~~~A~~-~-G~~v-~~l~e~l~~aDvVi~atG~~~lI~~e~l~ 152 (542)
+++|+|+|.+|..+++.+...|. .+.++++++.+...... . +..+ .+.+++++.+|+||.|+.. ..+ .+.++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~-~~vl~ 79 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIA-EEVLR 79 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHH-HHHHH
Confidence 69999999999999999988774 46789988877654332 2 4544 4667778899999999763 223 23332
Q ss_pred c--cCCCeEEEeccCC
Q psy4626 153 K--MKNGCVVCNMGHS 166 (542)
Q Consensus 153 ~--mk~GailvnvG~g 166 (542)
. ++++..++.+..+
T Consensus 80 ~l~~~~~~~vis~~ag 95 (258)
T PRK06476 80 ALRFRPGQTVISVIAA 95 (258)
T ss_pred HhccCCCCEEEEECCC
Confidence 2 4677788877654
No 301
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.84 E-value=0.0021 Score=63.83 Aligned_cols=96 Identities=24% Similarity=0.259 Sum_probs=66.2
Q ss_pred EEEEEcCChhHHHHHHHHHhC--CC-EEEEEeCCchhhhhhh-cCC-ceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGL--GC-VIYITEIDPICALQAC-MDG-FSVVKLNEVIRTVDIVVTATGNKNVVTREHMDK 153 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~--Ga-~Viv~d~dp~r~~~A~-~~G-~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~ 153 (542)
+|+++|||.||..+...++.- .+ .|++||+++.+...+. +.+ -.+.++++.+.++|++++|.+.. .+..-..+.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~-Av~e~~~~~ 80 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPE-AVREYVPKI 80 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHH-HHHHHhHHH
Confidence 689999999999999999843 45 6889999998876432 223 33577899999999999998643 343234555
Q ss_pred cCCCe--EEEeccCCCcccChHhh
Q psy4626 154 MKNGC--VVCNMGHSNTEIDVNSL 175 (542)
Q Consensus 154 mk~Ga--ilvnvG~g~~eid~~aL 175 (542)
|+.|. +++++|-..++-..+.+
T Consensus 81 L~~g~d~iV~SVGALad~~l~erl 104 (255)
T COG1712 81 LKAGIDVIVMSVGALADEGLRERL 104 (255)
T ss_pred HhcCCCEEEEechhccChHHHHHH
Confidence 66654 55566654444333433
No 302
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.83 E-value=0.0057 Score=64.36 Aligned_cols=98 Identities=20% Similarity=0.229 Sum_probs=70.9
Q ss_pred cCcEEEEEcCChhHHHHHHHHHh-CCC-EEEEEeCCchhhhhh-h----cCCcee---eCHHHHhcCCcEEEEcCCC-cc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQA-C----MDGFSV---VKLNEVIRTVDIVVTATGN-KN 144 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~-~Ga-~Viv~d~dp~r~~~A-~----~~G~~v---~~l~e~l~~aDvVi~atG~-~~ 144 (542)
..++++|+|+|..|+..+..+.. .+. +|.++++++.++... . ..|..+ .++++++.++|+|++||.. .+
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p 210 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP 210 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc
Confidence 45899999999999998888874 565 899999998876532 1 124442 4567888999999998764 35
Q ss_pred cCCHHHHhccCCCeEEEeccCC---CcccChHhhc
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR 176 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g---~~eid~~aL~ 176 (542)
++.. +.+++|..+..+|.. ..|++..-+.
T Consensus 211 ~i~~---~~l~~g~~v~~vg~d~~~~rEld~~~l~ 242 (330)
T PRK08291 211 ILKA---EWLHPGLHVTAMGSDAEHKNEIAPAVFA 242 (330)
T ss_pred EecH---HHcCCCceEEeeCCCCCCcccCCHHHHh
Confidence 5653 346899888877765 2567655544
No 303
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=96.82 E-value=0.0049 Score=63.69 Aligned_cols=101 Identities=21% Similarity=0.324 Sum_probs=73.0
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeCH-----HHHh---cC
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVKL-----NEVI---RT 132 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~l-----~e~l---~~ 132 (542)
.+.++.+. +.. .|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.. +++. .+.. .+
T Consensus 154 a~~~l~~~-~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~ 231 (339)
T cd08232 154 ALHAVNRA-GDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGD 231 (339)
T ss_pred HHHHHHhc-CCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCC
Confidence 34555443 233 89999999999999999999999999 899998777665555555542 2322 1222 34
Q ss_pred CcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 133 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 133 aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.|+++++.|....+ .+.++.|++++.+++.|..
T Consensus 232 vd~vld~~g~~~~~-~~~~~~L~~~G~~v~~g~~ 264 (339)
T cd08232 232 FDVVFEASGAPAAL-ASALRVVRPGGTVVQVGML 264 (339)
T ss_pred ccEEEECCCCHHHH-HHHHHHHhcCCEEEEEecC
Confidence 89999998854445 3678999999999998754
No 304
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.81 E-value=0.0054 Score=63.76 Aligned_cols=94 Identities=23% Similarity=0.356 Sum_probs=70.4
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC---------H---HHHh--cCCcEE
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK---------L---NEVI--RTVDIV 136 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~---------l---~e~l--~~aDvV 136 (542)
...+|++|+|.|.|.+|..+++.++.+|++ |+++..++.+...+...|.. +.+ . .+.. ++.|+|
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~v 238 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVV 238 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEE
Confidence 346799999999999999999999999997 88888777666555445543 221 1 1122 348999
Q ss_pred EEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 137 VTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 137 i~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
++|.|....+ .+.++.+++++.++.+|..+
T Consensus 239 ld~~g~~~~~-~~~~~~l~~~G~~v~~g~~~ 268 (343)
T cd05285 239 IECTGAESCI-QTAIYATRPGGTVVLVGMGK 268 (343)
T ss_pred EECCCCHHHH-HHHHHHhhcCCEEEEEccCC
Confidence 9998865445 36899999999999888543
No 305
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.81 E-value=0.0049 Score=63.05 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=61.6
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCch-hhhh-hhcCCceee-CHHHHhcCCcEEEEcCCCcccCC--
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPI-CALQ-ACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT-- 147 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~-r~~~-A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~-- 147 (542)
+.+++|||+|.+|..++..+...| -+|+++++++. +... +...|.... +..+++..+|+||.|.-...+..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl 82 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEAL 82 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHH
Confidence 458999999999999999999887 58999998764 3332 233466533 56677889999999875433221
Q ss_pred HHHHhccCCCeEEEecc
Q psy4626 148 REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG 164 (542)
.+....++++.+++++.
T Consensus 83 ~~l~~~~~~~~liIs~~ 99 (279)
T PRK07679 83 IPFKEYIHNNQLIISLL 99 (279)
T ss_pred HHHHhhcCCCCEEEEEC
Confidence 12233456788888863
No 306
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0031 Score=62.92 Aligned_cols=65 Identities=29% Similarity=0.381 Sum_probs=51.7
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--CCceeeC--------HHHH-hcCCcEEEEcCCC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--DGFSVVK--------LNEV-IRTVDIVVTATGN 142 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--~G~~v~~--------l~e~-l~~aDvVi~atG~ 142 (542)
++++|+|+|.+|..+|+.|...|..|+++|.|+.+..+... .+..++. +.++ +..+|+++-+||+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 47999999999999999999999999999999998776333 4444331 2333 5789999998875
No 307
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=96.79 E-value=0.012 Score=60.36 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=69.9
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|.+|+|.| .|.+|..+++.++..|++|++++.++.+...+...|.. +++ ..+ .. .+.|++++++
T Consensus 138 ~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~ 217 (327)
T PRK10754 138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSV 217 (327)
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECC
Confidence 45799999996 79999999999999999999998888777666566653 222 111 22 3689999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.. .+ .+.++.+++++.++.+|..
T Consensus 218 ~~~-~~-~~~~~~l~~~g~~v~~g~~ 241 (327)
T PRK10754 218 GKD-TW-EASLDCLQRRGLMVSFGNA 241 (327)
T ss_pred cHH-HH-HHHHHHhccCCEEEEEccC
Confidence 864 34 3688999999999998854
No 308
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=96.79 E-value=0.0065 Score=62.33 Aligned_cols=95 Identities=21% Similarity=0.259 Sum_probs=68.6
Q ss_pred HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH-------HHhcCC
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN-------EVIRTV 133 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~-------e~l~~a 133 (542)
.|+++.++ ....|.+|+|.|. |++|..+++.++.+|++|+++.++ ..+...|.. +.+.. +...+.
T Consensus 151 a~~~l~~~--~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~~~g~~~~~~~~~~~~~l~~~~~~~ 224 (325)
T cd08264 151 AYHALKTA--GLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLKEFGADEVVDYDEVEEKVKEITKMA 224 (325)
T ss_pred HHHHHHhc--CCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHHHHhCCCeeecchHHHHHHHHHhCCC
Confidence 35555442 3457999999998 999999999999999999988632 223344542 22211 112568
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
|+|++++|.. .+ .+.++.+++++.++.+|.
T Consensus 225 d~vl~~~g~~-~~-~~~~~~l~~~g~~v~~g~ 254 (325)
T cd08264 225 DVVINSLGSS-FW-DLSLSVLGRGGRLVTFGT 254 (325)
T ss_pred CEEEECCCHH-HH-HHHHHhhccCCEEEEEec
Confidence 9999999874 44 478999999999999885
No 309
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=96.79 E-value=0.014 Score=59.93 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=76.9
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeC--CchhhhhhhcCCceee-----CHHH----Hh-
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI--DPICALQACMDGFSVV-----KLNE----VI- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~--dp~r~~~A~~~G~~v~-----~l~e----~l- 130 (542)
.|+++.... ....|.+|+|.|.|.+|..+++.++.+|++|+++.. ++.+...+...|...+ +..+ ..
T Consensus 152 a~~~l~~~~-~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~ 230 (306)
T cd08258 152 AVHAVAERS-GIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEITD 230 (306)
T ss_pred HHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCcccCCCcCCHHHHHHHHcC
Confidence 455543332 234789999999999999999999999999887633 3334443444454211 1111 12
Q ss_pred -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC---cccChHhhcCCCccee
Q psy4626 131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWE 183 (542)
Q Consensus 131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~---~eid~~aL~~~~l~v~ 183 (542)
+..|+++++.|....+ ...++.|++++.++.+|... .++++..+..++++..
T Consensus 231 ~~~vd~vld~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~ 286 (306)
T cd08258 231 GDGADVVIECSGAVPAL-EQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVI 286 (306)
T ss_pred CCCCCEEEECCCChHHH-HHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEE
Confidence 3689999998754455 36788999999999888753 4445444433344333
No 310
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.77 E-value=0.01 Score=62.11 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=92.7
Q ss_pred hHHHHHHHHHhCCCEEEEEeCCchhhh-----hhhcCCceee-CHHHHhcCCcEEEEcCCCcccCC---HHHHhccCCCe
Q psy4626 88 VGKGCCQSLKGLGCVIYITEIDPICAL-----QACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT---REHMDKMKNGC 158 (542)
Q Consensus 88 IG~~vA~~l~~~Ga~Viv~d~dp~r~~-----~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~---~e~l~~mk~Ga 158 (542)
.|..+|+.|...|-.|++||+++.+.. .....|.... +..++++++|+||.+..+...+. ...++.+++|.
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~Ga 110 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENA 110 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCC
Confidence 478999999999999999998875432 2445677654 57888999999999876544331 23567889999
Q ss_pred EEEeccCCCcccChHhhcC------CCcceeeeccceeeEecCC--CCEEEEecCCCcccccCCCChhHHHhhHHHHHHH
Q psy4626 159 VVCNMGHSNTEIDVNSLRT------PDLTWEKVRSQVDHVIWPD--GKRIVLLAEGRLVNLSCSSLPSFVVSITACTQAL 230 (542)
Q Consensus 159 ilvnvG~g~~eid~~aL~~------~~l~v~~~~~~v~~y~~~d--g~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~l 230 (542)
++|+++.-+.+.-...|.. +.+.+..-+|. ..|. ++..++++.+.......++ -.|+-
T Consensus 111 IVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~----~vP~~~~~~~~~~~~~~~~~~~~A~----------ee~i~ 176 (341)
T TIGR01724 111 VICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPA----AVPGTPQHGHYVIGGKPTAGKEMAT----------EEQIS 176 (341)
T ss_pred EEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCC----CCCCCCCCceeeeccccccccccCC----------HHHHH
Confidence 9999997653333332321 11222111110 1222 4555777655533322221 12333
Q ss_pred HHHHHhcCCCCCCCCccccCChhhHHHHHHh
Q psy4626 231 ALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261 (542)
Q Consensus 231 a~~~L~~~~~~~~~~gv~~lp~~~d~~VA~l 261 (542)
...+|.+. .....|.+|.++-..|+.+
T Consensus 177 ~~~el~~~----~~~~~~~~pa~l~~~v~Dm 203 (341)
T TIGR01724 177 KCVELAKS----TGKKAYVVPADVTSAVADM 203 (341)
T ss_pred HHHHHHHH----hCCCeeecchhhcchhhhH
Confidence 34455542 3445677777766666654
No 311
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=96.77 E-value=0.0019 Score=66.67 Aligned_cols=93 Identities=24% Similarity=0.327 Sum_probs=73.4
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee---------------eCH----------H
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---------------VKL----------N 127 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v---------------~~l----------~ 127 (542)
...++.+++++|.|-+|...+...+-.|+-|...|..|.+..+-...|... ++. .
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a 239 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA 239 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999998866544444322 221 1
Q ss_pred HHhcCCcEEEEcC---C--CcccCCHHHHhccCCCeEEEeccC
Q psy4626 128 EVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 128 e~l~~aDvVi~at---G--~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
+.+++.||||++. | .+.+++++..+.||||.+++..+.
T Consensus 240 ~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa 282 (356)
T COG3288 240 EQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAA 282 (356)
T ss_pred HHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehh
Confidence 2347999999964 4 567889999999999999998764
No 312
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0062 Score=64.19 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=73.8
Q ss_pred CcEEEEEcCChhHHHHHHHHH-hCCC-EEEEEeCCchhhhhhh----cC-Cc---eeeCHHHHhcCCcEEEEcCC-Cccc
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQAC----MD-GF---SVVKLNEVIRTVDIVVTATG-NKNV 145 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~-~~Ga-~Viv~d~dp~r~~~A~----~~-G~---~v~~l~e~l~~aDvVi~atG-~~~l 145 (542)
-++++|||+|..++.-++.++ -++. +|.+|+++|....... .. +. .+.+.++++++||+|++||- +.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~Pi 209 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEPV 209 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCCe
Confidence 578999999999998888886 4565 8999999997654322 22 32 23467889999999999875 4466
Q ss_pred CCHHHHhccCCCeEEEeccCC---CcccChHhhcC
Q psy4626 146 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRT 177 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g---~~eid~~aL~~ 177 (542)
+.. +.+++|..+..+|.. ..|+|.+.+..
T Consensus 210 l~~---~~l~~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 210 LKA---EWLKPGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred ecH---hhcCCCcEEEecCCCCcccccCCHHHHHh
Confidence 654 457899999999974 36888776653
No 313
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=96.76 E-value=0.0077 Score=61.71 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCce-eeC-----HHH----
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-VVK-----LNE---- 128 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~-v~~-----l~e---- 128 (542)
...++++.+.. ....|.+|+|.| .|.+|..+++.++..|++|++++.++.+...+.. .|.. +++ ..+
T Consensus 131 ~ta~~~l~~~~-~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~ 209 (329)
T cd05288 131 LTAYFGLTEIG-KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKE 209 (329)
T ss_pred HHHHHHHHhcc-CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHH
Confidence 34455544332 235789999999 5999999999999999999999888877665544 5543 222 111
Q ss_pred Hh-cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 129 VI-RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 129 ~l-~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.. .+.|++++++|.. .+ .+.++.+++++.++++|..
T Consensus 210 ~~~~~~d~vi~~~g~~-~~-~~~~~~l~~~G~~v~~g~~ 246 (329)
T cd05288 210 AAPDGIDVYFDNVGGE-IL-DAALTLLNKGGRIALCGAI 246 (329)
T ss_pred hccCCceEEEEcchHH-HH-HHHHHhcCCCceEEEEeec
Confidence 11 4689999999874 44 3678999999999998854
No 314
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.75 E-value=0.018 Score=64.04 Aligned_cols=236 Identities=18% Similarity=0.208 Sum_probs=114.9
Q ss_pred HHHHHHHhCCCEEEEEeC----CchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 91 GCCQSLKGLGCVIYITEI----DPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 91 ~vA~~l~~~Ga~Viv~d~----dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
..++.|...|.+|+|=.- ..+.-.+....|+.+++-+++. .+|+|+-.- . + ..+.++.||+|..++..-+.
T Consensus 20 ~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~-~adiIlkV~-~-P--~~~e~~~l~~g~tli~~l~p 94 (511)
T TIGR00561 20 KTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFW-QSDIILKVN-A-P--SDAEIAELPAGKALVSFIWP 94 (511)
T ss_pred HHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchh-cCCEEEEeC-C-C--CHHHHHhcCCCCEEEEEcCc
Confidence 456778889999777321 1111222344577776554444 689987532 1 1 24679999999999877665
Q ss_pred C-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcC---CC--
Q psy4626 167 N-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNA---PS-- 240 (542)
Q Consensus 167 ~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~---~~-- 240 (542)
. +.-.++.+.++.++...-. . .| + +-..++++-|.. +--+.-. .-++...+.+.. +.
T Consensus 95 ~~n~~ll~~l~~k~it~ia~E----~--vp---r--israq~~d~lss----ma~iAGy--~Avi~Aa~~lgr~~~g~~t 157 (511)
T TIGR00561 95 AQNPELMEKLAAKNITVLAMD----A--VP---R--ISRAQKLDALSS----MANIAGY--RAIIEAAHEFGRFFTGQIT 157 (511)
T ss_pred cCCHHHHHHHHHcCCEEEEee----c--cc---c--cccCCccCcchh----hHHHHHH--HHHHHHHHHhhhhcCCcee
Confidence 3 3333455555544433211 0 01 0 001122222221 1111111 111122222221 00
Q ss_pred --CCCCC-ccccCChhhHHHHHHhcCCccccc-----cccccHHHHhhcCCC--CCCCCCCCccccCCeeeee-------
Q psy4626 241 --GRYKS-DVYLLPKKMDEYVASLHLPTFDAH-----LTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVK------- 303 (542)
Q Consensus 241 --~~~~~-gv~~lp~~~d~~VA~l~L~~lg~~-----i~~lt~~~a~~lg~~--e~~p~~a~ea~mdG~~v~~------- 303 (542)
+..++ .+..+-.-.-=..|-..+..+|.. ...-..++++-||+. ++++.. -...-+||...-
T Consensus 158 aag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e-~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 158 AAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE-EGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc-cccccccceeecCHHHHHH
Confidence 01111 111111110001111122233331 111234566777774 344322 122345665432
Q ss_pred ----hhhhcccCcEEEEcc---CCCC--ccCHhHHhcCCCCcEEEccC---CCCcccc
Q psy4626 304 ----LNEVIRTVDIVVTAT---GNKN--VVTREHMDKMKNGCVVCNMG---HSNTEID 349 (542)
Q Consensus 304 ----~~~a~~~~d~~~t~t---g~~~--vi~~~~~~~mk~gail~n~g---h~~~Ei~ 349 (542)
+.+.++.+||+|++. |.+. +|+++.++.||+|+++++.+ .++.|.-
T Consensus 237 ~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t 294 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYT 294 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEe
Confidence 345678999999988 7655 89999999999999999875 2355554
No 315
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.75 E-value=0.0081 Score=64.55 Aligned_cols=96 Identities=22% Similarity=0.321 Sum_probs=68.7
Q ss_pred CccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch------------------hhhh-hhcCCceeeCHHHHh-c
Q psy4626 72 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI------------------CALQ-ACMDGFSVVKLNEVI-R 131 (542)
Q Consensus 72 ~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~------------------r~~~-A~~~G~~v~~l~e~l-~ 131 (542)
+..+.|+||+|-|+|++|+-.|+.|...|++|++++.++. +... ....|.+.++-++.+ .
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 3348999999999999999999999999999999876654 2111 122344555556665 5
Q ss_pred CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcc
Q psy4626 132 TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 169 (542)
Q Consensus 132 ~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~e 169 (542)
.|||++-|. ..+.|+.+....++-. +++-.+.++.+
T Consensus 282 ~cDIl~PcA-~~n~I~~~na~~l~ak-~V~EgAN~P~t 317 (411)
T COG0334 282 DCDILIPCA-LENVITEDNADQLKAK-IVVEGANGPTT 317 (411)
T ss_pred cCcEEcccc-cccccchhhHHHhhhc-EEEeccCCCCC
Confidence 799998864 4458888888888776 45554444433
No 316
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.72 E-value=0.0043 Score=68.40 Aligned_cols=86 Identities=12% Similarity=0.238 Sum_probs=64.8
Q ss_pred EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC---C--ce-eeCHHHHh---cCCcEEEEcCCC----cccC
Q psy4626 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---G--FS-VVKLNEVI---RTVDIVVTATGN----KNVV 146 (542)
Q Consensus 80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~---G--~~-v~~l~e~l---~~aDvVi~atG~----~~lI 146 (542)
++|||.|.+|..+|+.+...|.+|+++|+++.+....... | +. ..++++++ +.+|+|+.+.-. ..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 7999999999999999999999999999999877654433 2 22 23555544 578988887533 2334
Q ss_pred CHHHHhccCCCeEEEeccCC
Q psy4626 147 TREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 147 ~~e~l~~mk~GailvnvG~g 166 (542)
.+.+..+++|.++++.|..
T Consensus 82 -~~l~~~L~~g~iIID~gns 100 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNS 100 (467)
T ss_pred -HHHHhhCCCCCEEEECCCc
Confidence 3456678899999999865
No 317
>KOG0409|consensus
Probab=96.72 E-value=0.0032 Score=64.94 Aligned_cols=69 Identities=19% Similarity=0.226 Sum_probs=60.4
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKN 144 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~ 144 (542)
.-++++.||.|.+|..++..|-..|-+|+|||++..+..+-...|.++. ++.|+.+.+|+||++.+++.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~ 103 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPK 103 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChH
Confidence 4679999999999999999999999999999999988777677788764 67899999999999877543
No 318
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=96.72 E-value=0.0042 Score=64.55 Aligned_cols=91 Identities=23% Similarity=0.379 Sum_probs=70.4
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HH---HHh--cCCcEEEEcCCC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LN---EVI--RTVDIVVTATGN 142 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~---e~l--~~aDvVi~atG~ 142 (542)
.+|.+|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +++ .. +.. ++.|+++++.|.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~ 241 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGN 241 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCC
Confidence 479999999999999999999999999 798887777776655566653 221 11 112 368999999987
Q ss_pred cccCCHHHHhccCCCeEEEeccCC
Q psy4626 143 KNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 143 ~~lI~~e~l~~mk~GailvnvG~g 166 (542)
...+. +.++.+++++.++.+|..
T Consensus 242 ~~~~~-~~~~~l~~~G~~v~~g~~ 264 (341)
T cd05281 242 PKAIE-QGLKALTPGGRVSILGLP 264 (341)
T ss_pred HHHHH-HHHHHhccCCEEEEEccC
Confidence 66664 678999999999988754
No 319
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.71 E-value=0.0034 Score=59.19 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=58.0
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC-ceee--CHH-HHhcCCcEEEEcCCCcccCCH
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG-FSVV--KLN-EVIRTVDIVVTATGNKNVVTR 148 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G-~~v~--~l~-e~l~~aDvVi~atG~~~lI~~ 148 (542)
..+.|++|+|+|.|.+|...++.|...|++|++++ |....+....+ ..+. .++ +-+.++|+||.+|++.. +|.
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~ 85 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA-VNM 85 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH-HHH
Confidence 46789999999999999999999999999999995 43222222222 2221 122 23688999999997754 443
Q ss_pred HHHhccCCCeEEEecc
Q psy4626 149 EHMDKMKNGCVVCNMG 164 (542)
Q Consensus 149 e~l~~mk~GailvnvG 164 (542)
......+.+ .++|+.
T Consensus 86 ~i~~~a~~~-~~vn~~ 100 (157)
T PRK06719 86 MVKQAAHDF-QWVNVV 100 (157)
T ss_pred HHHHHHHHC-CcEEEC
Confidence 333333444 356644
No 320
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.69 E-value=0.031 Score=59.84 Aligned_cols=221 Identities=14% Similarity=0.169 Sum_probs=116.2
Q ss_pred HHHHHHHhCCCEEEEEeC----CchhhhhhhcCCceee-CHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626 91 GCCQSLKGLGCVIYITEI----DPICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 91 ~vA~~l~~~Ga~Viv~d~----dp~r~~~A~~~G~~v~-~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
..++.|...|.+|++=.- .-+.-.+-...|+.++ +.+++++ +|+|+-.- . . ..+.++.+++|.+++..-+
T Consensus 21 ~~v~~l~~~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~-~dii~~Vk-~--p-~~~~~~~~~~g~~l~~~~~ 95 (370)
T TIGR00518 21 AGVAELTSRGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD-AELVLKVK-E--P-LPEEYGYLRHGQILFTYLH 95 (370)
T ss_pred HHHHHHHhCCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc-CCEEEEeC-C--C-CHHHHhhcCCCcEEEEEec
Confidence 346678888999988421 1122223445688776 5778885 99997532 1 2 2467899999999887665
Q ss_pred CC-cccChHhhcCCCcceeeeccceeeEecCCCCEEEEecCCCcccccCCCChhHHHhhHHHHHHHHHHHHhcCCCCC--
Q psy4626 166 SN-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGR-- 242 (542)
Q Consensus 166 g~-~eid~~aL~~~~l~v~~~~~~v~~y~~~dg~~I~LLa~GrLvnl~~~thp~~vmd~sfa~q~la~~~L~~~~~~~-- 242 (542)
.. .....+.+.++.++... |. .+. .++|.++-|..- +++ .-..|. .++..++.+.-.++
T Consensus 96 ~a~~~~~~~~l~~~~~t~i~-------~e-----~i~-~~~~~~~~l~~~---~~i-aG~~av-~~aa~~~~~~~~g~~~ 157 (370)
T TIGR00518 96 LAAERALTDALLDSGTTAIA-------YE-----TVQ-TADGALPLLAPM---SEV-AGRLAA-QVGAYHLEKTQGGRGV 157 (370)
T ss_pred cCCCHHHHHHHHHcCCeEEE-------ee-----eee-ccCCCCccccch---hHH-HHHHHH-HHHHHHhHhhcCCcce
Confidence 53 22223444433332221 11 111 233444333221 011 111111 22223332211000
Q ss_pred CCCccccCChhhHHHHHHhcCCcccc-ccccccHHHHhhcCCC----CCCCCCCCcc--ccCCee------eeehhhhcc
Q psy4626 243 YKSDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLN----KAGPFKPSYY--SMDGFS------VVKLNEVIR 309 (542)
Q Consensus 243 ~~~gv~~lp~~~d~~VA~l~L~~lg~-~i~~lt~~~a~~lg~~----e~~p~~a~ea--~mdG~~------v~~~~~a~~ 309 (542)
+-.+.-.++.. ..-.+|. .++....+.++.+|+. +.+|-+.-++ .+.++- ...++++++
T Consensus 158 ~~~~~~~l~~~--------~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~ 229 (370)
T TIGR00518 158 LLGGVPGVEPG--------DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVK 229 (370)
T ss_pred eecCCCCCCCc--------eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHc
Confidence 01111111111 1223333 6777788888888872 3333332211 122210 024678899
Q ss_pred cCcEEEEcc---CC--CCccCHhHHhcCCCCcEEEccC
Q psy4626 310 TVDIVVTAT---GN--KNVVTREHMDKMKNGCVVCNMG 342 (542)
Q Consensus 310 ~~d~~~t~t---g~--~~vi~~~~~~~mk~gail~n~g 342 (542)
.+|+||+++ |. +.+|+.+.++.||+|++++|.+
T Consensus 230 ~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 230 RADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 999999987 44 5679999999999999999988
No 321
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=96.69 E-value=0.011 Score=62.20 Aligned_cols=103 Identities=24% Similarity=0.333 Sum_probs=73.9
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI 130 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l 130 (542)
+.|+++.... ....|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++ ..+ ..
T Consensus 174 tA~~~l~~~~-~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~ 252 (367)
T cd08263 174 TAYGALKHAA-DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREIT 252 (367)
T ss_pred HHHHHHHhcc-cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHh
Confidence 3444543332 234689999999999999999999999997 88888777776555555543 222 111 22
Q ss_pred --cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 --RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 --~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
...|+|+++.|....+ .+.++.|++++.++.+|..
T Consensus 253 ~~~~~d~vld~vg~~~~~-~~~~~~l~~~G~~v~~g~~ 289 (367)
T cd08263 253 GGRGVDVVVEALGKPETF-KLALDVVRDGGRAVVVGLA 289 (367)
T ss_pred CCCCCCEEEEeCCCHHHH-HHHHHHHhcCCEEEEEccC
Confidence 4589999998875344 4688999999999998754
No 322
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=96.69 E-value=0.0062 Score=63.24 Aligned_cols=92 Identities=20% Similarity=0.300 Sum_probs=70.8
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|++++|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++ ..+ .. ++.|+++++.
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECC
Confidence 34799999999999999999999999996 88888778777666666653 222 111 22 4689999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|....+. +.++.|++++.++..|..
T Consensus 239 g~~~~~~-~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 239 GAPKALE-QGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred CCHHHHH-HHHHhhcCCCEEEEEccC
Confidence 7655553 678999999999998854
No 323
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=96.68 E-value=0.012 Score=59.90 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=70.0
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|.+|+|.|. |.+|..+++.++.+|++|+++..++.+...+...|.+ +.+ ..+ .. ++.|++++++
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~ 215 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAV 215 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECC
Confidence 357899999987 8999999999999999999988777766666556653 221 111 11 4699999999
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.... ...++.+++++.++.+|..
T Consensus 216 g~~~~--~~~~~~l~~~g~~v~~g~~ 239 (323)
T cd05282 216 GGESA--TRLARSLRPGGTLVNYGLL 239 (323)
T ss_pred CCHHH--HHHHHhhCCCCEEEEEccC
Confidence 87654 3678999999999988854
No 324
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=96.68 E-value=0.0064 Score=63.06 Aligned_cols=92 Identities=21% Similarity=0.339 Sum_probs=70.5
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcCC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTATG 141 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~atG 141 (542)
..|++|+|.|.|.+|..+++.++.+|+ +|++++.++.+...+...|.+ +.+ ..+ .. ++.|+|++|.|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCC
Confidence 479999999999999999999999999 688887777666555555653 221 112 12 47999999888
Q ss_pred CcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
....+. +.++.+++++.+++.|..+
T Consensus 242 ~~~~~~-~~~~~l~~~G~~v~~g~~~ 266 (341)
T PRK05396 242 APSAFR-QMLDNMNHGGRIAMLGIPP 266 (341)
T ss_pred CHHHHH-HHHHHHhcCCEEEEEecCC
Confidence 655554 6788999999999998654
No 325
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.66 E-value=0.0035 Score=63.92 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=58.2
Q ss_pred EEEEEcCChhHHHHHHHHHhC--CCE-EEEEeCCchhhhhhh-cCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGL--GCV-IYITEIDPICALQAC-MDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK 153 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~--Ga~-Viv~d~dp~r~~~A~-~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~ 153 (542)
+++|+|+|.||+.+++.+... +.+ +.++|+++.+..... ..|.. +.++++++.++|+|++|++.. ....-....
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~-~~~~~~~~a 81 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN-AVEEVVPKS 81 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH-HHHHHHHHH
Confidence 799999999999999988765 465 557899887755432 33433 356788888999999998643 332233445
Q ss_pred cCCCeEEEecc
Q psy4626 154 MKNGCVVCNMG 164 (542)
Q Consensus 154 mk~GailvnvG 164 (542)
++.|.-++..+
T Consensus 82 l~~Gk~Vvv~s 92 (265)
T PRK13304 82 LENGKDVIIMS 92 (265)
T ss_pred HHcCCCEEEEc
Confidence 56665554443
No 326
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=96.66 E-value=0.018 Score=58.82 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=72.5
Q ss_pred HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH---HH---hcCCc
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN---EV---IRTVD 134 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~---e~---l~~aD 134 (542)
.|+++..+ ....|.+++|.|. |.+|+.+++.++..|++|+++..++.+.......|.. +.+.+ +. +.+.|
T Consensus 151 a~~~l~~~--~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 228 (332)
T cd08259 151 AVHALKRA--GVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKLGGAD 228 (332)
T ss_pred HHHHHHHh--CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecHHHHHHHHhccCCC
Confidence 34554442 3457899999997 8999999999999999999988877766555444432 22221 22 13689
Q ss_pred EEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 135 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+++++.|... + .+.++.+++++.++..|..
T Consensus 229 ~v~~~~g~~~-~-~~~~~~~~~~g~~v~~g~~ 258 (332)
T cd08259 229 VVIELVGSPT-I-EESLRSLNKGGRLVLIGNV 258 (332)
T ss_pred EEEECCChHH-H-HHHHHHhhcCCEEEEEcCC
Confidence 9999988654 3 4678889999999988854
No 327
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.65 E-value=0.012 Score=63.27 Aligned_cols=121 Identities=16% Similarity=0.245 Sum_probs=88.7
Q ss_pred HHhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC---EEEEEeCCchh-------------h
Q psy4626 53 FDNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPIC-------------A 113 (542)
Q Consensus 53 fd~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga---~Viv~d~dp~r-------------~ 113 (542)
.|..+||+--+..++. +.++..+...++++.|+|.-|.+++..+++.|+ +|+++|+...- .
T Consensus 172 hDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~ 251 (432)
T COG0281 172 HDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKY 251 (432)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHH
Confidence 3777788765555544 345778889999999999999999999999999 69999864211 0
Q ss_pred hhhh-cCCceeeCHHHHhcCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCCcccChHhhc
Q psy4626 114 LQAC-MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 176 (542)
Q Consensus 114 ~~A~-~~G~~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~~eid~~aL~ 176 (542)
..+. ..+.. .. ++++.++|+++-++|. ++++++.++.|.+.-++.-.+-...|+..+.+.
T Consensus 252 ~~a~~~~~~~-~~-~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~ 312 (432)
T COG0281 252 AKAIEDTGER-TL-DLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALANPTPEITPEDAK 312 (432)
T ss_pred HHHHhhhccc-cc-cccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecCCCCccCCHHHHh
Confidence 1110 11100 10 3467899999999988 999999999998888888777766777777654
No 328
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=96.64 E-value=0.0063 Score=60.01 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=61.8
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh--hcCC--ceeeCHHHHhcCCcEEEEcCCCcccCC--HHHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA--CMDG--FSVVKLNEVIRTVDIVVTATGNKNVVT--REHM 151 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A--~~~G--~~v~~l~e~l~~aDvVi~atG~~~lI~--~e~l 151 (542)
++++|+|.|.||.++|.++...|.+|++-.++..+...+ ...+ ....+.+++.+.+|||+.+.--..... ++..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~ 81 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR 81 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence 479999999999999999999999999985554443322 2223 334567888999999999875332221 3334
Q ss_pred hccCCCeEEEeccCC
Q psy4626 152 DKMKNGCVVCNMGHS 166 (542)
Q Consensus 152 ~~mk~GailvnvG~g 166 (542)
+.+. |.++|.+...
T Consensus 82 ~~~~-~KIvID~tnp 95 (211)
T COG2085 82 DALG-GKIVIDATNP 95 (211)
T ss_pred HHhC-CeEEEecCCC
Confidence 4444 8899887753
No 329
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=96.61 E-value=0.01 Score=59.44 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=70.6
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|++|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|.. +.+ ..+ .. ++.|+++++.
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~ 213 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGV 213 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECC
Confidence 45799999999 59999999999999999999998888777666555653 221 111 12 3689999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
|.. .+ ...++.+++++.++.+|..+
T Consensus 214 ~~~-~~-~~~~~~l~~~g~~v~~g~~~ 238 (320)
T cd05286 214 GKD-TF-EGSLDSLRPRGTLVSFGNAS 238 (320)
T ss_pred CcH-hH-HHHHHhhccCcEEEEEecCC
Confidence 864 44 36899999999999988653
No 330
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=96.61 E-value=0.00072 Score=70.78 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=73.6
Q ss_pred HHHHhcCCcccc----ccccccHHHHhhcCCCC---CCCCCCC-ccccCCeeeeehhhhcccCcEEEEcc---CCCCccC
Q psy4626 257 YVASLHLPTFDA----HLTELSDEQAKYMGLNK---AGPFKPS-YYSMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVT 325 (542)
Q Consensus 257 ~VA~l~L~~lg~----~i~~lt~~~a~~lg~~e---~~p~~a~-ea~mdG~~v~~~~~a~~~~d~~~t~t---g~~~vi~ 325 (542)
....++.+++|+ .+++-.+.+++.+|+.. .+|.++. .|..+|+++.+++|+++.||+|++.. .++++++
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~ 89 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYK 89 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHH
Confidence 344566677776 88888899999999843 1343332 35568999999999999999999933 5689999
Q ss_pred HhHHhcCCCCcEEEccCCCCcccc
Q psy4626 326 REHMDKMKNGCVVCNMGHSNTEID 349 (542)
Q Consensus 326 ~~~~~~mk~gail~n~gh~~~Ei~ 349 (542)
.+.|..||+|++|+-+-.|++...
T Consensus 90 ~eil~~MK~GaiL~f~hgfni~~~ 113 (335)
T PRK13403 90 AEVEENLREGQMLLFSHGFNIHFG 113 (335)
T ss_pred HHHHhcCCCCCEEEECCCcceecC
Confidence 999999999999999999988655
No 331
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.59 E-value=0.009 Score=66.07 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCceeeCHHHH--hcCCcEEE
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVVKLNEV--IRTVDIVV 137 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~v~~l~e~--l~~aDvVi 137 (542)
.+++.++.+. +..+.|++++|+|+|.+|+.++..+...|++|+++++++.+.... ...+....+.++. +.++|+||
T Consensus 317 ~G~~~~l~~~-~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVI 395 (477)
T PRK09310 317 EGLFSLLKQK-NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIII 395 (477)
T ss_pred HHHHHHHHhc-CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEE
Confidence 3445555443 346789999999999999999999999999999999887665432 2222223333332 57899999
Q ss_pred EcCCC
Q psy4626 138 TATGN 142 (542)
Q Consensus 138 ~atG~ 142 (542)
.|+..
T Consensus 396 natP~ 400 (477)
T PRK09310 396 NCLPP 400 (477)
T ss_pred EcCCC
Confidence 99753
No 332
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=96.58 E-value=0.0096 Score=61.30 Aligned_cols=98 Identities=23% Similarity=0.328 Sum_probs=71.1
Q ss_pred HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC---HHHH---hcCCcE
Q psy4626 64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK---LNEV---IRTVDI 135 (542)
Q Consensus 64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~---l~e~---l~~aDv 135 (542)
++++.+. ....|.+|+|.|. |.+|..+++.++..|++|++++.++.+...+... +. +.+ ..+. +...|+
T Consensus 152 ~~~~~~~--~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~d~ 228 (334)
T PRK13771 152 YRGLRRA--GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKKIGGADI 228 (334)
T ss_pred HHHHHhc--CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCchhHHHHHHhcCCCcE
Confidence 4444443 2457899999999 8999999999999999999998888765544322 11 111 1111 236899
Q ss_pred EEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 136 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 136 Vi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+++++|... + .+.++.+++++.++..|..
T Consensus 229 ~ld~~g~~~-~-~~~~~~l~~~G~~v~~g~~ 257 (334)
T PRK13771 229 VIETVGTPT-L-EESLRSLNMGGKIIQIGNV 257 (334)
T ss_pred EEEcCChHH-H-HHHHHHHhcCCEEEEEecc
Confidence 999998753 4 4789999999999998864
No 333
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=96.57 E-value=0.012 Score=59.90 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=70.5
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----H-HH---Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----L-NE---VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l-~e---~l--~~aDvVi~at 140 (542)
...|.+|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|.. +++ . +. .. ++.|++++++
T Consensus 140 ~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~ 219 (324)
T cd08244 140 LTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGV 219 (324)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECC
Confidence 35689999999 59999999999999999999999888776665555543 221 1 11 12 3699999999
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.... .+.++.+++++.++.+|..
T Consensus 220 g~~~~--~~~~~~l~~~g~~v~~g~~ 243 (324)
T cd08244 220 GGAIG--RAALALLAPGGRFLTYGWA 243 (324)
T ss_pred ChHhH--HHHHHHhccCcEEEEEecC
Confidence 87643 5789999999999998864
No 334
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=96.56 E-value=0.011 Score=61.40 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=68.6
Q ss_pred ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh-----cCCcEEEEcCCC
Q psy4626 75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI-----RTVDIVVTATGN 142 (542)
Q Consensus 75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l-----~~aDvVi~atG~ 142 (542)
..|++|+|.|. |.+|..+++.++.+|++|+++. ++.+...+...|.. +.+ ..+.+ .+.|++++++|.
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~ 231 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCIST 231 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeecc
Confidence 47999999997 8999999999999999998876 66666666556653 221 11211 468999999887
Q ss_pred cccCCHHHHhccCC--CeEEEeccCC
Q psy4626 143 KNVVTREHMDKMKN--GCVVCNMGHS 166 (542)
Q Consensus 143 ~~lI~~e~l~~mk~--GailvnvG~g 166 (542)
+..+ .+.++.+++ ++.++.+|..
T Consensus 232 ~~~~-~~~~~~l~~~~~g~~v~~g~~ 256 (339)
T cd08249 232 PESA-QLCAEALGRSGGGKLVSLLPV 256 (339)
T ss_pred chHH-HHHHHHHhccCCCEEEEecCC
Confidence 5555 378999999 9999988854
No 335
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.56 E-value=0.018 Score=58.57 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=79.8
Q ss_pred hhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-----------EEEEEeCCc-----------hhhhh--hhcCCceee
Q psy4626 69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-----------VIYITEIDP-----------ICALQ--ACMDGFSVV 124 (542)
Q Consensus 69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-----------~Viv~d~dp-----------~r~~~--A~~~G~~v~ 124 (542)
|.++..+...+++|+|.|.-|.++|+.+...++ +++.+|..- .+... .....-+..
T Consensus 17 k~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~ 96 (254)
T cd00762 17 KVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESG 96 (254)
T ss_pred HHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccC
Confidence 445667889999999999999999999988776 578777542 12221 111222345
Q ss_pred CHHHHhc--CCcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCCc--ccChHhhc
Q psy4626 125 KLNEVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT--EIDVNSLR 176 (542)
Q Consensus 125 ~l~e~l~--~aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~~--eid~~aL~ 176 (542)
++.++++ ++|++|-+++.+++++++.++.|. +.-+|.-.+.... |+..+...
T Consensus 97 ~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~ 155 (254)
T cd00762 97 DLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAY 155 (254)
T ss_pred CHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHH
Confidence 7889988 999999999888999999999998 7777777676644 77666443
No 336
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=96.55 E-value=0.0092 Score=61.72 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=69.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeCHH------H------Hh--cCCcEEE
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKLN------E------VI--RTVDIVV 137 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l~------e------~l--~~aDvVi 137 (542)
...|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +++.. + .. ...|+++
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vi 238 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIF 238 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEE
Confidence 45789999999999999999999999996 67777777776655556643 22210 1 12 3589999
Q ss_pred EcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 138 TATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 138 ~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++.|....+ .+.++.+++++.++++|..
T Consensus 239 d~~g~~~~~-~~~~~~l~~~g~~v~~g~~ 266 (341)
T cd08262 239 ECVGAPGLI-QQIIEGAPPGGRIVVVGVC 266 (341)
T ss_pred ECCCCHHHH-HHHHHHhccCCEEEEECCC
Confidence 998874444 3678999999999998864
No 337
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.53 E-value=0.015 Score=60.48 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=59.0
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhcC--------Cc--eee-CHHHHhcCCcEEEEcCCCcc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMD--------GF--SVV-KLNEVIRTVDIVVTATGNKN 144 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~~--------G~--~v~-~l~e~l~~aDvVi~atG~~~ 144 (542)
++|+|+|.|.+|..+|..|...|. +|+++|+++.++....++ +. .+. ...+.+.++|+||.|+|.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 479999999999999999999994 899999988764321111 11 111 12345789999999998532
Q ss_pred cC--C---------------HHHHhccCCCeEEEecc
Q psy4626 145 VV--T---------------REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 145 lI--~---------------~e~l~~mk~GailvnvG 164 (542)
-- + .+.+....+.+++++++
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11 1 12344445777888877
No 338
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=96.52 E-value=0.014 Score=59.82 Aligned_cols=102 Identities=22% Similarity=0.216 Sum_probs=73.9
Q ss_pred HHHHHHHhhcCccccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHHh----
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEVI---- 130 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~l---- 130 (542)
..|+++.+.. ....|++++|.| .|.+|..+++.++.+|++|+++..++.+...+...|.. +.+ ..+.+
T Consensus 126 ta~~~l~~~~-~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~ 204 (329)
T cd08250 126 TASIALEEVG-EMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEY 204 (329)
T ss_pred HHHHHHHHhc-CCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhc
Confidence 3455554432 345799999999 59999999999999999999998877766655555642 221 11211
Q ss_pred -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++.|+++++.|.. .+ .+.++.+++++.++++|..
T Consensus 205 ~~~vd~v~~~~g~~-~~-~~~~~~l~~~g~~v~~g~~ 239 (329)
T cd08250 205 PKGVDVVYESVGGE-MF-DTCVDNLALKGRLIVIGFI 239 (329)
T ss_pred CCCCeEEEECCcHH-HH-HHHHHHhccCCeEEEEecc
Confidence 4689999998863 34 4689999999999998854
No 339
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=96.51 E-value=0.013 Score=60.58 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCcee-e-----CHHHH-
Q psy4626 59 CRESIIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-V-----KLNEV- 129 (542)
Q Consensus 59 ~~~s~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v-~-----~l~e~- 129 (542)
++.+.+.++.+- +..-.|+||+|-|+ |.+|.-+.|.+|-.|++|+.+--.+.+...... .||+. + ++.+.
T Consensus 134 pG~TAY~gLl~i-gqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L 212 (340)
T COG2130 134 PGLTAYFGLLDI-GQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQAL 212 (340)
T ss_pred chHHHHHHHHHh-cCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHH
Confidence 356677777655 34678999999997 999999999999999999999777777665555 67763 2 33333
Q ss_pred ---h-cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 130 ---I-RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 130 ---l-~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+ ++.|+.|++.|.. +++ ..|.+|+..++++.+|.-
T Consensus 213 ~~a~P~GIDvyfeNVGg~-v~D-Av~~~ln~~aRi~~CG~I 251 (340)
T COG2130 213 KEACPKGIDVYFENVGGE-VLD-AVLPLLNLFARIPVCGAI 251 (340)
T ss_pred HHHCCCCeEEEEEcCCch-HHH-HHHHhhccccceeeeeeh
Confidence 3 6899999999864 444 689999999999999963
No 340
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=96.51 E-value=0.023 Score=58.08 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=68.3
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHH----Hh--cCCcEEEEc
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNE----VI--RTVDIVVTA 139 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e----~l--~~aDvVi~a 139 (542)
...|.+|+|.| .|.+|+.+++.++..|++|+++..++.+...+...|.. +++ ..+ .. ++.|+++++
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 217 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDC 217 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEEC
Confidence 35789999999 59999999999999999988888888777666555653 221 111 12 468999999
Q ss_pred CCCcccCCHHHHhccCCCeEEEeccC
Q psy4626 140 TGNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 140 tG~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
.|.. .+ ...++.+++++.+++.|.
T Consensus 218 ~~~~-~~-~~~~~~l~~~g~~i~~~~ 241 (334)
T PTZ00354 218 VGGS-YL-SETAEVLAVDGKWIVYGF 241 (334)
T ss_pred CchH-HH-HHHHHHhccCCeEEEEec
Confidence 8753 34 367889999999998874
No 341
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.51 E-value=0.013 Score=63.02 Aligned_cols=94 Identities=26% Similarity=0.220 Sum_probs=67.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHh-C-CC-EEEEEeCCchhhhh-h----hcC-C---ce-eeCHHHHhcCCcEEEEcCCC-
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKG-L-GC-VIYITEIDPICALQ-A----CMD-G---FS-VVKLNEVIRTVDIVVTATGN- 142 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~-~-Ga-~Viv~d~dp~r~~~-A----~~~-G---~~-v~~l~e~l~~aDvVi~atG~- 142 (542)
-++++|+|+|..++..++.+.. + .. +|.+|++++.++.. + ... | +. +.+.++++.+||||++||.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 5799999999999988888765 4 34 99999999987542 1 111 2 22 24678899999999998742
Q ss_pred c------ccCCHHHHhccCCCeEEEeccCCCcccChHhh
Q psy4626 143 K------NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 175 (542)
Q Consensus 143 ~------~lI~~e~l~~mk~GailvnvG~g~~eid~~aL 175 (542)
. +++.. +.+|+|..++.+|. .|+|-.-+
T Consensus 235 ~~~~s~~Pv~~~---~~lkpG~hv~~ig~--~eld~~~l 268 (379)
T PRK06199 235 TGDPSTYPYVKR---EWVKPGAFLLMPAA--CRIDEGME 268 (379)
T ss_pred CCCCCcCcEecH---HHcCCCcEEecCCc--ccCCHHHH
Confidence 2 66754 45789998887775 45664433
No 342
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.49 E-value=0.011 Score=60.45 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=58.0
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee------------eCHHHHhcCCcEEEEcCCCcccC
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------------VKLNEVIRTVDIVVTATGNKNVV 146 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v------------~~l~e~l~~aDvVi~atG~~~lI 146 (542)
+++|+|+|.+|..+|..|...|.+|+++++++.+.......|... .+..++ +.+|+||.|+.+..+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~- 79 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQL- 79 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccH-
Confidence 699999999999999999999999999998776554333344421 123333 789999999865433
Q ss_pred CHHHHhc----cCCCeEEEeccCC
Q psy4626 147 TREHMDK----MKNGCVVCNMGHS 166 (542)
Q Consensus 147 ~~e~l~~----mk~GailvnvG~g 166 (542)
.+.++. +.++..++...-|
T Consensus 80 -~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 80 -PAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred -HHHHHHHhhhcCCCCEEEEecCC
Confidence 233433 4456666654433
No 343
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.48 E-value=0.0061 Score=55.66 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=52.4
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEE-eCCchhhhhhhc--CCceeeCHHHHhcCCcEEEEcCCCcccCC--HHHH
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT-EIDPICALQACM--DGFSVVKLNEVIRTVDIVVTATGNKNVVT--REHM 151 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~-d~dp~r~~~A~~--~G~~v~~l~e~l~~aDvVi~atG~~~lI~--~e~l 151 (542)
--+|+|||+|++|..+++.|+..|..|..+ .+++.....+.. .+..+.++++.+..+|+++.++... .|. .+.+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~L 88 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQL 88 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHHH
Confidence 458999999999999999999999988776 444433333322 2334567788899999999988643 332 1233
Q ss_pred hc---cCCCeEEEecc
Q psy4626 152 DK---MKNGCVVCNMG 164 (542)
Q Consensus 152 ~~---mk~GailvnvG 164 (542)
.. .++|.+++-++
T Consensus 89 a~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 89 AQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HCC--S-TT-EEEES-
T ss_pred HHhccCCCCcEEEECC
Confidence 33 46888877554
No 344
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=96.48 E-value=0.026 Score=58.32 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=69.4
Q ss_pred HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc----hhhhhhhcCCce-ee--------CHHH
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP----ICALQACMDGFS-VV--------KLNE 128 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp----~r~~~A~~~G~~-v~--------~l~e 128 (542)
.++++.+.. ...+|++|+|.|. |.+|..+++.++..|++|+++..++ .+...+...|+. ++ +..+
T Consensus 134 a~~~l~~~~-~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 212 (341)
T cd08290 134 AYRLLEDFV-KLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATE 212 (341)
T ss_pred HHHHHHhhc-ccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHH
Confidence 344443322 2357999999987 9999999999999999988875443 334444455653 22 1212
Q ss_pred Hh----c-CCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 129 VI----R-TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 129 ~l----~-~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
.+ . +.|++++++|.... .+.++.+++++.++.+|..
T Consensus 213 ~i~~~~~~~~d~vld~~g~~~~--~~~~~~l~~~G~~v~~g~~ 253 (341)
T cd08290 213 LLKSAPGGRPKLALNCVGGKSA--TELARLLSPGGTMVTYGGM 253 (341)
T ss_pred HHHHHcCCCceEEEECcCcHhH--HHHHHHhCCCCEEEEEecc
Confidence 11 1 58999999997543 3578889999999998843
No 345
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=96.45 E-value=0.011 Score=61.21 Aligned_cols=92 Identities=24% Similarity=0.347 Sum_probs=69.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|++|+|.|.|.+|..+++.++.+|. +|++++.++.+...+...|+. +++ ..+ .. .+.|+++++.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 4478999999999999999999999997 898888777666555555543 222 112 11 3689999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|....+ .+.++.|++++.++..|..
T Consensus 245 g~~~~~-~~~~~~l~~~G~~v~~g~~ 269 (347)
T cd05278 245 GFEETF-EQAVKVVRPGGTIANVGVY 269 (347)
T ss_pred CCHHHH-HHHHHHhhcCCEEEEEcCC
Confidence 764445 4678999999999998854
No 346
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.45 E-value=0.0093 Score=62.39 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=58.8
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-----------------eCHHHHhcCCcEEEEcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----------------VKLNEVIRTVDIVVTAT 140 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-----------------~~l~e~l~~aDvVi~at 140 (542)
.+|+|+|.|.+|..+|..|...|.+|+++++++.. ......|..+ .+..+.+..+|+||.|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence 37999999999999999999999999999986642 2222334321 11124567899999987
Q ss_pred CCcccCC--HHHHhccCCCeEEEeccC
Q psy4626 141 GNKNVVT--REHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 141 G~~~lI~--~e~l~~mk~GailvnvG~ 165 (542)
.+..... .+....++++.+++.+.-
T Consensus 82 k~~~~~~~~~~l~~~~~~~~iii~~~n 108 (341)
T PRK08229 82 KSAATADAAAALAGHARPGAVVVSFQN 108 (341)
T ss_pred cCcchHHHHHHHHhhCCCCCEEEEeCC
Confidence 6543321 223344577888776643
No 347
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=96.45 E-value=0.027 Score=57.99 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=66.0
Q ss_pred CcEEEEEcC-ChhHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcCCce-eeC----HHHH---h--cCCcEEEEcCCCcc
Q psy4626 77 GKQVVLCGY-GEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFS-VVK----LNEV---I--RTVDIVVTATGNKN 144 (542)
Q Consensus 77 GktVvViG~-G~IG~~vA~~l~~~-Ga~Viv~d~dp~r~~~A~~~G~~-v~~----l~e~---l--~~aDvVi~atG~~~ 144 (542)
|.+|+|.|. |.+|..+++.++.+ |++|+++..++.+...+...|.+ +.+ ..+. + .+.|++++++|...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~ 228 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQ 228 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHH
Confidence 899999995 99999999999998 99999998777766655556653 222 2221 1 36899999876544
Q ss_pred cCCHHHHhccCCCeEEEecc
Q psy4626 145 VVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG 164 (542)
.+ .+.++.+++++.+++.+
T Consensus 229 ~~-~~~~~~l~~~G~~v~~~ 247 (336)
T TIGR02817 229 HF-KEIVELLAPQGRFALID 247 (336)
T ss_pred HH-HHHHHHhccCCEEEEEc
Confidence 55 37899999999999875
No 348
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.43 E-value=0.0072 Score=59.26 Aligned_cols=36 Identities=22% Similarity=0.515 Sum_probs=33.5
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 109 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d 109 (542)
.+..++|+|+|+|.+|..+|..|...|. +++++|.|
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678899999999999999999999999 79999988
No 349
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=96.43 E-value=0.029 Score=58.07 Aligned_cols=88 Identities=22% Similarity=0.265 Sum_probs=65.0
Q ss_pred cCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHHH---hcCCcEEEEcCCCccc
Q psy4626 76 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNEV---IRTVDIVVTATGNKNV 145 (542)
Q Consensus 76 ~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e~---l~~aDvVi~atG~~~l 145 (542)
.|.+|+|.| .|.+|..+++.++.+|++|++...+ .+...+...|.. +++ ..+. ..+.|+++++.|.. .
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~-~ 239 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD-T 239 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH-H
Confidence 499999999 5999999999999999998887643 344444445542 221 1111 25699999999875 4
Q ss_pred CCHHHHhccCCCeEEEeccCC
Q psy4626 146 VTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g 166 (542)
+ ...++.+++++.++++|..
T Consensus 240 ~-~~~~~~l~~~G~~v~~g~~ 259 (350)
T cd08248 240 E-KWALKLLKKGGTYVTLVSP 259 (350)
T ss_pred H-HHHHHHhccCCEEEEecCC
Confidence 4 4689999999999998854
No 350
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.41 E-value=0.0071 Score=61.74 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=57.6
Q ss_pred cEEEEEcCChhHHHHHHHHHhCC---CE-EEEEeCCchhhhhhhcCCcee-eCHHHH-hcCCcEEEEcCCCcccCCHHHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEIDPICALQACMDGFSV-VKLNEV-IRTVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~G---a~-Viv~d~dp~r~~~A~~~G~~v-~~l~e~-l~~aDvVi~atG~~~lI~~e~l 151 (542)
.+|+|+|||.||+.+++.+..-+ .+ +.++++++.+...... ...+ .+++++ ...+|+|++|.+.. .+..-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~~ 80 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHAE 80 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCCHH-HHHHHHH
Confidence 58999999999999999987543 43 4557777655433222 2333 458886 47899999998754 3433445
Q ss_pred hccCCCeEEEeccCC
Q psy4626 152 DKMKNGCVVCNMGHS 166 (542)
Q Consensus 152 ~~mk~GailvnvG~g 166 (542)
..|+.|.-++-.+.|
T Consensus 81 ~iL~~g~dlvv~SvG 95 (267)
T PRK13301 81 GCLTAGLDMIICSAG 95 (267)
T ss_pred HHHhcCCCEEEEChh
Confidence 567767665554433
No 351
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=96.39 E-value=0.017 Score=59.82 Aligned_cols=102 Identities=24% Similarity=0.309 Sum_probs=72.4
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HH---HHh-
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LN---EVI- 130 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~---e~l- 130 (542)
..|+++.+. ....|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+.......|.. +++ .+ ...
T Consensus 147 ta~~~l~~~--~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 224 (343)
T cd08236 147 VALHAVRLA--GITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTE 224 (343)
T ss_pred HHHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhC
Confidence 334554432 245789999999999999999999999997 99998777655444444432 221 11 222
Q ss_pred -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++.|++++++|....+ ...++.|++++.++.+|..
T Consensus 225 ~~~~d~vld~~g~~~~~-~~~~~~l~~~G~~v~~g~~ 260 (343)
T cd08236 225 GRGADLVIEAAGSPATI-EQALALARPGGKVVLVGIP 260 (343)
T ss_pred CCCCCEEEECCCCHHHH-HHHHHHhhcCCEEEEEccc
Confidence 3489999998765555 3678999999999998854
No 352
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=96.37 E-value=0.017 Score=59.75 Aligned_cols=101 Identities=20% Similarity=0.317 Sum_probs=72.6
Q ss_pred HHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----H----HHHh-
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----L----NEVI- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l----~e~l- 130 (542)
.++++... ....|++|+|.|.|.+|..+++.++..|++ |+++..++.+.......|.. +++ . .+..
T Consensus 154 a~~~l~~~--~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 231 (343)
T cd08235 154 CINAQRKA--GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTD 231 (343)
T ss_pred HHHHHHhc--CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhC
Confidence 44555333 245799999999999999999999999998 88888777766554444542 221 1 1222
Q ss_pred -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++.|+++++.|....+ .+.++.+++++.++..|..
T Consensus 232 ~~~vd~vld~~~~~~~~-~~~~~~l~~~g~~v~~~~~ 267 (343)
T cd08235 232 GRGADVVIVATGSPEAQ-AQALELVRKGGRILFFGGL 267 (343)
T ss_pred CcCCCEEEECCCChHHH-HHHHHHhhcCCEEEEEecc
Confidence 3589999998865445 3678899999999988753
No 353
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=96.36 E-value=0.036 Score=54.60 Aligned_cols=91 Identities=19% Similarity=0.300 Sum_probs=69.6
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc--e-eeC-----HHH----Hh--cCCcEEEE
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF--S-VVK-----LNE----VI--RTVDIVVT 138 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~--~-v~~-----l~e----~l--~~aDvVi~ 138 (542)
...|++|+|.| .|.+|..+++.++.+|++|++++.++.+...+...|. . +++ ..+ .. +..|++++
T Consensus 102 ~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 181 (288)
T smart00829 102 LRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLN 181 (288)
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEe
Confidence 45799999999 6999999999999999999999988887766655564 1 221 111 12 36899999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|. ..+ ...++.+++++.++..|..
T Consensus 182 ~~~~-~~~-~~~~~~l~~~g~~v~~g~~ 207 (288)
T smart00829 182 SLAG-EFL-DASLRCLAPGGRFVEIGKR 207 (288)
T ss_pred CCCH-HHH-HHHHHhccCCcEEEEEcCc
Confidence 9874 344 3678999999999998864
No 354
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.36 E-value=0.012 Score=62.32 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=59.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEc---CCCc-ccCCH
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA---TGNK-NVVTR 148 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~a---tG~~-~lI~~ 148 (542)
.+.|++|+|+|+|.+|..+++.|+..|+ +|+++.++..+.. .+-......+....+||||.| |+++ +.++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~ 246 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW 246 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence 4789999999999999999999999996 7999987763211 100000111234689999986 4443 45666
Q ss_pred HHHhccCCCeEEEeccCC
Q psy4626 149 EHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 149 e~l~~mk~GailvnvG~g 166 (542)
+.++..++ -.++..+..
T Consensus 247 ~~~~~~~~-r~~iDLAvP 263 (338)
T PRK00676 247 ESLADIPD-RIVFDFNVP 263 (338)
T ss_pred HHHhhccC-cEEEEecCC
Confidence 66655433 367777743
No 355
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=96.35 E-value=0.011 Score=58.31 Aligned_cols=88 Identities=24% Similarity=0.246 Sum_probs=58.8
Q ss_pred EEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------CCc----eeeCHHHHhcCCcEEEEcCCCccc
Q psy4626 79 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGF----SVVKLNEVIRTVDIVVTATGNKNV 145 (542)
Q Consensus 79 tVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------~G~----~v~~l~e~l~~aDvVi~atG~~~l 145 (542)
+++|+| .|.+|..++..+...|.+|+++++++.+...... .|+ ...+..++++.+|+||.|+....+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~~ 81 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDHV 81 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHHH
Confidence 699997 8999999999999999999999998876532211 122 123556778899999998754332
Q ss_pred CC-HHHHhccCCCeEEEeccCC
Q psy4626 146 VT-REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 146 I~-~e~l~~mk~GailvnvG~g 166 (542)
-. .+.+....++.+++++.-+
T Consensus 82 ~~~l~~l~~~l~~~vvI~~~ng 103 (219)
T TIGR01915 82 LKTLESLRDELSGKLVISPVVP 103 (219)
T ss_pred HHHHHHHHHhccCCEEEEeccC
Confidence 11 0122211234677776544
No 356
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.33 E-value=0.011 Score=63.63 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=65.3
Q ss_pred cEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhhhhhcCC---cee--eC------HHHHhcCCcEEEEcCCCccc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDG---FSV--VK------LNEVIRTVDIVVTATGNKNV 145 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~~A~~~G---~~v--~~------l~e~l~~aDvVi~atG~~~l 145 (542)
++++|+|+|.||+.+|..|...| .+|++.|+++.++.++.... .++ ++ +.+++++.|+||.|..- -
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~--~ 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP--F 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc--h
Confidence 57999999999999999999999 79999999988776654442 222 22 34567888999998643 3
Q ss_pred CCHHHH-hccCCCeEEEeccCCC
Q psy4626 146 VTREHM-DKMKNGCVVCNMGHSN 167 (542)
Q Consensus 146 I~~e~l-~~mk~GailvnvG~g~ 167 (542)
++...+ ..++.|.-.+.++-..
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCC
Confidence 444555 3457888888877543
No 357
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=96.33 E-value=0.014 Score=60.43 Aligned_cols=93 Identities=26% Similarity=0.373 Sum_probs=69.3
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTATG 141 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~atG 141 (542)
...|++|+|.|.|.+|..+++.++.+|++|+++..++.+.......|.. +++ ..+ .. +..|+++++.|
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 4578999999999999999999999999999997777666544444442 221 212 22 35899999987
Q ss_pred CcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
....+ .+.++.|++++.++..|..+
T Consensus 237 ~~~~~-~~~~~~l~~~G~~i~~g~~~ 261 (337)
T cd08261 237 NPASM-EEAVELVAHGGRVVLVGLSK 261 (337)
T ss_pred CHHHH-HHHHHHHhcCCEEEEEcCCC
Confidence 65555 36788999999999887543
No 358
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.30 E-value=0.0069 Score=69.11 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=55.3
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----HHHH-----hcCCcEEEEcCCCc
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----LNEV-----IRTVDIVVTATGNK 143 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----l~e~-----l~~aDvVi~atG~~ 143 (542)
.+.|+|+|||++|+.+++.|+..|.++++.|.||.+...+...|+.+.. -.+. +.++|.++.++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP 475 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH
Confidence 4689999999999999999999999999999999998877778876542 1122 46899999988653
No 359
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=96.28 E-value=0.022 Score=58.17 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=67.1
Q ss_pred cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH---H----Hh-cCCcEEEEcCCCccc
Q psy4626 76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN---E----VI-RTVDIVVTATGNKNV 145 (542)
Q Consensus 76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~---e----~l-~~aDvVi~atG~~~l 145 (542)
.|++|+|.|. |.+|..+++.++.+|++|+++..++.+...+...|+. +++.. . +. .+.|.++++.|.. .
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 224 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGH-T 224 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHH-H
Confidence 5789999998 9999999999999999999988888777666666653 22211 1 11 2567889998763 2
Q ss_pred CCHHHHhccCCCeEEEeccCC
Q psy4626 146 VTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG~g 166 (542)
+ ...+..++.++.++..|+.
T Consensus 225 ~-~~~~~~~~~~g~~~~~G~~ 244 (324)
T cd08288 225 L-ANVLAQTRYGGAVAACGLA 244 (324)
T ss_pred H-HHHHHHhcCCCEEEEEEec
Confidence 3 2567788898999998875
No 360
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.27 E-value=0.0077 Score=67.67 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=52.8
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH----HHH-----hcCCcEEEEcCCC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL----NEV-----IRTVDIVVTATGN 142 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l----~e~-----l~~aDvVi~atG~ 142 (542)
..++|+|||++|+.+++.|+..|.+|+++|.|+.+..++.+.|+.++.- ++. ++++|.++.++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 5789999999999999999999999999999999888887788765421 122 4688988776654
No 361
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.25 E-value=0.013 Score=60.10 Aligned_cols=87 Identities=11% Similarity=0.027 Sum_probs=58.9
Q ss_pred cEEEEEcCChhHHHHHHHHHhCC----CEEEEEeCCchh-hhhh-hcC-Cce-eeCHHHHhcCCcEEEEcCCCcccCCHH
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPIC-ALQA-CMD-GFS-VVKLNEVIRTVDIVVTATGNKNVVTRE 149 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~G----a~Viv~d~dp~r-~~~A-~~~-G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e 149 (542)
.+++|+|+|.+|..++..+...| .+|+++++++.. .... ... +.. ..+..+++..+|+||.|+.... + .+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~-~-~~ 79 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLA-V-LP 79 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHH-H-HH
Confidence 36999999999999999999888 589999876532 2211 112 233 3456677889999999875432 2 23
Q ss_pred HHh----ccCCCeEEEeccCC
Q psy4626 150 HMD----KMKNGCVVCNMGHS 166 (542)
Q Consensus 150 ~l~----~mk~GailvnvG~g 166 (542)
.++ .++++..++++.-|
T Consensus 80 vl~~l~~~l~~~~~ivS~~aG 100 (277)
T PRK06928 80 LLKDCAPVLTPDRHVVSIAAG 100 (277)
T ss_pred HHHHHHhhcCCCCEEEEECCC
Confidence 333 35677777776655
No 362
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.25 E-value=0.016 Score=57.59 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=58.3
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCC---CE-EEEEeC-Cchhhhhhh-cCCcee-eCHHHHhcCCcEEEEcCCCcccCCH
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEI-DPICALQAC-MDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR 148 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~G---a~-Viv~d~-dp~r~~~A~-~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~~ 148 (542)
...+|+|+|+|.+|..++..+...| .+ ++++++ ++.+..... ..+... .+.+++++++|+||.|+... .+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~-~ 80 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AH-E 80 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HH-H
Confidence 3568999999999999999987766 33 777775 455544332 345543 45677889999999997543 22 2
Q ss_pred HHHhccC---CCeEEEeccCC
Q psy4626 149 EHMDKMK---NGCVVCNMGHS 166 (542)
Q Consensus 149 e~l~~mk---~GailvnvG~g 166 (542)
+.++.++ ++..++++.-|
T Consensus 81 ~v~~~l~~~~~~~~vis~~~g 101 (245)
T PRK07634 81 ELLAELSPLLSNQLVVTVAAG 101 (245)
T ss_pred HHHHHHHhhccCCEEEEECCC
Confidence 3333332 34566766544
No 363
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=96.22 E-value=0.043 Score=53.93 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=68.0
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCC--ce-eeC-----HHH----Hh--cCCcEEEE
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--FS-VVK-----LNE----VI--RTVDIVVT 138 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G--~~-v~~-----l~e----~l--~~aDvVi~ 138 (542)
...|.+|+|.| .|.+|..+++.++.+|++|+++..++.+...+...| .. +.+ ..+ .. ++.|++++
T Consensus 106 ~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 185 (293)
T cd05195 106 LQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLN 185 (293)
T ss_pred cCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEe
Confidence 45799999997 699999999999999999999987766655554444 21 221 111 22 36899999
Q ss_pred cCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 139 ATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 139 atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.|.. .+ ...++.+++++.++.+|..
T Consensus 186 ~~~~~-~~-~~~~~~l~~~g~~v~~g~~ 211 (293)
T cd05195 186 SLSGE-LL-RASWRCLAPFGRFVEIGKR 211 (293)
T ss_pred CCCch-HH-HHHHHhcccCceEEEeecc
Confidence 99876 44 3678999999999988854
No 364
>KOG4230|consensus
Probab=96.21 E-value=0.015 Score=64.33 Aligned_cols=87 Identities=29% Similarity=0.407 Sum_probs=71.2
Q ss_pred HHHHHHhhcCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCC
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG 141 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG 141 (542)
++.-+..+ +..+.|+.++|+|--. +|.-++..|+-..+.|++|.. .+-++.+.+..+|+||.+.|
T Consensus 149 cmeLlk~a-~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHS-------------KT~~lae~v~~ADIvIvAiG 214 (935)
T KOG4230|consen 149 CMELLKEA-GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHS-------------KTRNLAEKVSRADIVIVAIG 214 (935)
T ss_pred HHHHHHHc-CCccccceeEEEecccccCChHHHHHHhcCceEEEecC-------------CCccHHHHhccCCEEEEEcC
Confidence 33334444 5789999999999876 599999999999999999972 23456777889999999999
Q ss_pred CcccCCHHHHhccCCCeEEEeccCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
-++.+.. +++|+|+++|.+|..
T Consensus 215 ~PefVKg---dWiKpGavVIDvGIN 236 (935)
T KOG4230|consen 215 QPEFVKG---DWIKPGAVVIDVGIN 236 (935)
T ss_pred Ccceeec---ccccCCcEEEEcccc
Confidence 9999864 578999999999964
No 365
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.19 E-value=0.026 Score=57.35 Aligned_cols=108 Identities=17% Similarity=0.222 Sum_probs=74.9
Q ss_pred hhcCccccCcEEEEEcCChhHHHHHHHHHhC----CC-------EEEEEeCCc-----------hhhhhhhcCCc--eee
Q psy4626 69 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEIDP-----------ICALQACMDGF--SVV 124 (542)
Q Consensus 69 r~~~~~l~GktVvViG~G~IG~~vA~~l~~~----Ga-------~Viv~d~dp-----------~r~~~A~~~G~--~v~ 124 (542)
|.++..+...+++++|.|.-|.++|..+... |. +++++|... .+...++...- ...
T Consensus 17 ~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~ 96 (255)
T PF03949_consen 17 RVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWG 96 (255)
T ss_dssp HHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--S
T ss_pred HHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccccc
Confidence 4456778999999999999999999998877 88 488888653 22222322211 124
Q ss_pred CHHHHhcCC--cEEEEcCCCcccCCHHHHhccCC---CeEEEeccCCCc--ccChHhhc
Q psy4626 125 KLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSNT--EIDVNSLR 176 (542)
Q Consensus 125 ~l~e~l~~a--DvVi~atG~~~lI~~e~l~~mk~---GailvnvG~g~~--eid~~aL~ 176 (542)
++.++++++ |++|-++|.+++++++.++.|.+ .-+|.-.+.... |+..+...
T Consensus 97 ~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~ 155 (255)
T PF03949_consen 97 SLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAY 155 (255)
T ss_dssp SHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHH
T ss_pred CHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHH
Confidence 788888766 99999999999999999999976 777777776644 66665443
No 366
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.17 E-value=0.013 Score=67.88 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=59.2
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCc-------------ee-eCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------SV-VKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------~v-~~l~e~l~~ 132 (542)
++|+|+|.|.+|.++|..+...|.+|+++|+++..+..+. ..|. .. .++ +.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999999987543321 1110 01 112 34689
Q ss_pred CcEEEEcCC-C----cccCCHHHHhccCCCeEEE-eccC
Q psy4626 133 VDIVVTATG-N----KNVVTREHMDKMKNGCVVC-NMGH 165 (542)
Q Consensus 133 aDvVi~atG-~----~~lI~~e~l~~mk~Gailv-nvG~ 165 (542)
||+||++.- . ..++ ++.=+.+++++++. |++.
T Consensus 393 aDlViEav~E~l~~K~~vf-~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVL-AEVEQHVREDAILASNTST 430 (714)
T ss_pred CCEEEEcCcccHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence 999999853 1 1222 23334568999988 5553
No 367
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.16 E-value=0.014 Score=58.28 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=60.0
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh--hhhhcCCceeeC--H-HHHhcCCcEEEEcCCCcccCC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA--LQACMDGFSVVK--L-NEVIRTVDIVVTATGNKNVVT 147 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~--~~A~~~G~~v~~--l-~e~l~~aDvVi~atG~~~lI~ 147 (542)
..+.|++|+|+|.|.++..=+..|...|++|+|+-.+.... ..+....+.... . .+-+.++++||.||+.+ -+|
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~vN 99 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-KLN 99 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-HHH
Confidence 34679999999999999888888989999999985332211 112222222221 1 23468899999999765 455
Q ss_pred HHHHhccCCCeEEEecc
Q psy4626 148 REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG 164 (542)
.......+.-+.++|+.
T Consensus 100 ~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 100 NKIRKHCDRLYKLYIDC 116 (223)
T ss_pred HHHHHHHHHcCCeEEEc
Confidence 55555556656666654
No 368
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.16 E-value=0.017 Score=63.65 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=33.3
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
..|++|+|+|.|+.|..+|..|+..|.+|+++|..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 368999999999999999999999999999999765
No 369
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.15 E-value=0.018 Score=59.45 Aligned_cols=79 Identities=24% Similarity=0.220 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh-cC----Cc---eeeCH---HH
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MD----GF---SVVKL---NE 128 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~-~~----G~---~v~~l---~e 128 (542)
.++..++.+. .....|++++|+|+|-.+++++..|...|+ +|+++++++.|+..-. .. +. ...+. .+
T Consensus 112 ~Gf~~~L~~~-~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~ 190 (283)
T PRK14027 112 SGFGRGMEEG-LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED 190 (283)
T ss_pred HHHHHHHHhc-CcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHH
Confidence 4445555432 224678999999999999999999999998 8999999987764321 11 11 12222 23
Q ss_pred HhcCCcEEEEcC
Q psy4626 129 VIRTVDIVVTAT 140 (542)
Q Consensus 129 ~l~~aDvVi~at 140 (542)
.+..+|+||+||
T Consensus 191 ~~~~~divINaT 202 (283)
T PRK14027 191 VIAAADGVVNAT 202 (283)
T ss_pred HHhhcCEEEEcC
Confidence 456789999987
No 370
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=96.15 E-value=0.021 Score=57.35 Aligned_cols=91 Identities=25% Similarity=0.336 Sum_probs=68.6
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|++++|.|. |.+|..+++.++..|++|++++.++.+...+...|.. +.+ ..+ .. ...|+++++.
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~ 216 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPV 216 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECc
Confidence 457899999998 9999999999999999999998887776555545542 111 111 11 3589999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.. .+ ...++.+++++.++++|..
T Consensus 217 g~~-~~-~~~~~~~~~~g~~v~~~~~ 240 (323)
T cd08241 217 GGD-VF-EASLRSLAWGGRLLVIGFA 240 (323)
T ss_pred cHH-HH-HHHHHhhccCCEEEEEccC
Confidence 863 33 3578899999999998854
No 371
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=96.14 E-value=0.02 Score=60.26 Aligned_cols=93 Identities=22% Similarity=0.258 Sum_probs=69.8
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCchhhhhhhcCCce-eeC-----HH----HHh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVK-----LN----EVI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l--~~aDvVi~at 140 (542)
...|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+...+...|+. +++ .. +.. +..|++++++
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~ 259 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV 259 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcC
Confidence 45789999999999999999999999996 88888777776555555543 221 11 122 4589999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
|....+ .+.++.+++++.++..|..+
T Consensus 260 ~~~~~~-~~~~~~l~~~G~~v~~g~~~ 285 (363)
T cd08279 260 GRAATI-RQALAMTRKGGTAVVVGMGP 285 (363)
T ss_pred CChHHH-HHHHHHhhcCCeEEEEecCC
Confidence 855455 36789999999999887543
No 372
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=96.13 E-value=0.042 Score=55.06 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=71.4
Q ss_pred HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--
Q psy4626 64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI-- 130 (542)
Q Consensus 64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l-- 130 (542)
++++.+.. ....|++|+|.|. |.+|+.+++.++..|++|++++.++.+...+...|.. +.+ ..+ ..
T Consensus 128 ~~~~~~~~-~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (323)
T cd05276 128 WQNLFQLG-GLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGG 206 (323)
T ss_pred HHHHHHhc-CCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCC
Confidence 44444332 2357899999996 8999999999999999999998877666555545542 211 111 12
Q ss_pred cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 131 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 ~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
++.|++++++|... + ...++.+++++.++++|..
T Consensus 207 ~~~d~vi~~~g~~~-~-~~~~~~~~~~g~~i~~~~~ 240 (323)
T cd05276 207 RGVDVILDMVGGDY-L-ARNLRALAPDGRLVLIGLL 240 (323)
T ss_pred CCeEEEEECCchHH-H-HHHHHhhccCCEEEEEecC
Confidence 36899999988654 3 3578888999999988754
No 373
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.13 E-value=0.0096 Score=67.67 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=63.5
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC----HHHH-----hcCCcEEEEcCCCcccC-
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----LNEV-----IRTVDIVVTATGNKNVV- 146 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~----l~e~-----l~~aDvVi~atG~~~lI- 146 (542)
...|+|+|||++|+.+++.|...|.++++.|.||.+..++...|+.+.. -.+. +.+||.++.++++...-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 3579999999999999999999999999999999988878778876531 1122 47899999988754221
Q ss_pred -CHHHHhccCCCeEEEecc
Q psy4626 147 -TREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 147 -~~e~l~~mk~GailvnvG 164 (542)
-....+.+.|...++--.
T Consensus 480 ~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 480 KIVELCQQHFPHLHILARA 498 (601)
T ss_pred HHHHHHHHHCCCCeEEEEe
Confidence 012344454555555433
No 374
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.023 Score=58.76 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=66.2
Q ss_pred HHHHHHHHhh-cCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhhhh-cCC---c--eeeCHHHH--h
Q psy4626 61 ESIIDSLKRS-TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MDG---F--SVVKLNEV--I 130 (542)
Q Consensus 61 ~s~~~ai~r~-~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~A~-~~G---~--~v~~l~e~--l 130 (542)
.++..++.+. ......|++++|+|+|-.+++++..|+..|+ +|+|+++++.|+.+.. ..+ . ......+. .
T Consensus 109 ~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~ 188 (283)
T COG0169 109 IGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGL 188 (283)
T ss_pred HHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccc
Confidence 4445555543 2245579999999999999999999999996 8999999998865432 212 1 11222221 2
Q ss_pred cCCcEEEEcCCC--cc-----cCCHHHHhccCCCeEEEeccCC
Q psy4626 131 RTVDIVVTATGN--KN-----VVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 131 ~~aDvVi~atG~--~~-----lI~~e~l~~mk~GailvnvG~g 166 (542)
..+|++|+||.. .+ .+. .+.++++.++..+=-.
T Consensus 189 ~~~dliINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~ 228 (283)
T COG0169 189 EEADLLINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYN 228 (283)
T ss_pred cccCEEEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccC
Confidence 269999998731 11 121 4556677776655433
No 375
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.06 E-value=0.029 Score=57.94 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCCE-EEEEeCCc
Q psy4626 62 SIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDP 110 (542)
Q Consensus 62 s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga~-Viv~d~dp 110 (542)
++..++++. +..+.|++++|+|+|-+|+.++..|...|++ |+++++++
T Consensus 112 G~~~~l~~~-~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 112 GFVRNLREH-GVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHHhc-CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 344455432 2346799999999999999999999999995 99999986
No 376
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.05 E-value=0.023 Score=62.30 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=51.4
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-----hhhhcCCceeeC---HHHHhcCCcEEEEcCCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVVK---LNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~ 143 (542)
+.+++|+|+|+|..|+.+|+.|+..|++|+++|.++... ......|+.+.. ..+.+.++|+||.++|-+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~ 88 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMR 88 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCC
Confidence 458899999999999999999999999999999765311 123345665431 234457899999887743
No 377
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.03 E-value=0.016 Score=62.87 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=50.1
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc-CCceeeC--------HHHH-hcCCcEEEEcCCC
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSVVK--------LNEV-IRTVDIVVTATGN 142 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~-~G~~v~~--------l~e~-l~~aDvVi~atG~ 142 (542)
+++|+|+|.+|+.+++.|...|.+|+++|.++.+...+.. .|+.++. ++++ +..+|.++.+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 6999999999999999999999999999999987665543 4554331 2333 5789998888764
No 378
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.01 E-value=0.019 Score=66.59 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=59.2
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCC-------------cee-eCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDG-------------FSV-VKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G-------------~~v-~~l~e~l~~ 132 (542)
++|+|+|.|.+|.++|..+...|.+|+++|+++..+..+. ..| ... .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999999987543221 111 011 122 44689
Q ss_pred CcEEEEcCCC-----cccCCHHHHhccCCCeEEE-eccC
Q psy4626 133 VDIVVTATGN-----KNVVTREHMDKMKNGCVVC-NMGH 165 (542)
Q Consensus 133 aDvVi~atG~-----~~lI~~e~l~~mk~Gailv-nvG~ 165 (542)
||+||++.-- ..++ .+.-+.+++++++. |++.
T Consensus 393 aDlViEav~E~l~~K~~vf-~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVL-AEVEQKVREDTILASNTST 430 (715)
T ss_pred CCEEEecccCcHHHHHHHH-HHHHhhCCCCcEEEEcCCC
Confidence 9999998531 1222 23334568999888 5553
No 379
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=96.00 E-value=0.058 Score=55.18 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=72.7
Q ss_pred HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeC-----HHH--Hh-cCC
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK-----LNE--VI-RTV 133 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~-----l~e--~l-~~a 133 (542)
.+.++.+.. ....|++|+|.|. |.+|..+++.++..|++|+++.. +.+...+...|..... ..+ .. .+.
T Consensus 127 a~~~l~~~~-~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 204 (331)
T cd08273 127 AYQMLHRAA-KVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRELGATPIDYRTKDWLPAMLTPGGV 204 (331)
T ss_pred HHHHHHHhc-CCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhhhccCCCc
Confidence 344443322 3457999999997 99999999999999999999875 6665555556643221 111 11 368
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
|+++++.|... + ...++.+++++.++.+|...
T Consensus 205 d~vl~~~~~~~-~-~~~~~~l~~~g~~v~~g~~~ 236 (331)
T cd08273 205 DVVFDGVGGES-Y-EESYAALAPGGTLVCYGGNS 236 (331)
T ss_pred eEEEECCchHH-H-HHHHHHhcCCCEEEEEccCC
Confidence 99999988765 4 36789999999999988653
No 380
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.99 E-value=0.018 Score=60.47 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=58.0
Q ss_pred cEEEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCchhhhhhhcCCc-eeeCHHHHhcCCcEEEEcCCCcccCCHHHHhcc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKM 154 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~~A~~~G~-~v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~m 154 (542)
-+|+|+|+|.||+.++..+... +++++. +++++..... ...+. ...+.++++.++|+|+.|+++..-. ....+.+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~-~~~~v~~~~d~~e~l~~iDVViIctPs~th~-~~~~~~L 81 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD-TETPVYAVADDEKHLDDVDVLILCMGSATDI-PEQAPYF 81 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh-hcCCccccCCHHHhccCCCEEEEcCCCccCH-HHHHHHH
Confidence 4899999999999999998765 787765 6887522221 12232 2345556678899999998754323 3566778
Q ss_pred CCCeEEEec
Q psy4626 155 KNGCVVCNM 163 (542)
Q Consensus 155 k~Gailvnv 163 (542)
+.|.-+|..
T Consensus 82 ~aG~NVV~s 90 (324)
T TIGR01921 82 AQFANTVDS 90 (324)
T ss_pred HcCCCEEEC
Confidence 888777765
No 381
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.99 E-value=0.019 Score=50.42 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=55.9
Q ss_pred EEEEEcCChhHHHHHHHHHhC--CCEEE-EEeCCchhhhh-hhcCCce-eeCHHHHhc--CCcEEEEcCCCcccCCHHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGL--GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHM 151 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~--Ga~Vi-v~d~dp~r~~~-A~~~G~~-v~~l~e~l~--~aDvVi~atG~~~lI~~e~l 151 (542)
+++|+|+|.+|+.-...++.. +.++. ++|+++.+... +...|+. +.+.++++. ..|+|+.+|.+..-. .-..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~-~~~~ 80 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHA-EIAK 80 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHH-HHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchH-HHHH
Confidence 689999999999988777766 45654 68999987664 4456766 456888875 799999997653211 2234
Q ss_pred hccCCCeEE
Q psy4626 152 DKMKNGCVV 160 (542)
Q Consensus 152 ~~mk~Gail 160 (542)
..++.|.-+
T Consensus 81 ~~l~~g~~v 89 (120)
T PF01408_consen 81 KALEAGKHV 89 (120)
T ss_dssp HHHHTTSEE
T ss_pred HHHHcCCEE
Confidence 445555533
No 382
>PRK04148 hypothetical protein; Provisional
Probab=95.99 E-value=0.018 Score=53.07 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee--C---H-HHHhcCCcEEEEcCCCcccC
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--K---L-NEVIRTVDIVVTATGNKNVV 146 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~--~---l-~e~l~~aDvVi~atG~~~lI 146 (542)
.+++++++|.| -|..+|..|...|.+|+++|++|.....+...+.+++ + . .+..+++|+|...--.+.+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence 56899999999 8999999999999999999999987776766665533 1 1 24457888888764444444
No 383
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.98 E-value=0.021 Score=65.42 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=33.3
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
..|++|+|||.|+.|+.+|..|+..|.+|+++|..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 368999999999999999999999999999999764
No 384
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.97 E-value=0.02 Score=62.16 Aligned_cols=68 Identities=29% Similarity=0.404 Sum_probs=50.3
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-----hhhcCCceeeC---HHHHhcCCcEEEEcCCC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-----QACMDGFSVVK---LNEVIRTVDIVVTATGN 142 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-----~A~~~G~~v~~---l~e~l~~aDvVi~atG~ 142 (542)
+.+++|+|+|.|.+|..+|..|...|++|+++|.++.... +....|..+.. .++...++|+||.++|.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 4689999999999999999999999999999998753211 11223444321 23445679999998875
No 385
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.96 E-value=0.035 Score=57.47 Aligned_cols=79 Identities=25% Similarity=0.223 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCch---hhhh-hhcCC------ceeeCHH--
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI---CALQ-ACMDG------FSVVKLN-- 127 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~---r~~~-A~~~G------~~v~~l~-- 127 (542)
.+++.++.+. +..+.|++++|+|+|-.++.++..+...|+ +|+++++++. ++.. +...+ ..+.+++
T Consensus 109 ~Gf~~~l~~~-~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~ 187 (288)
T PRK12749 109 TGHIRAIKES-GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQ 187 (288)
T ss_pred HHHHHHHHhc-CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhh
Confidence 3444555432 345789999999999999999999999998 8999999853 3321 21111 1233332
Q ss_pred ----HHhcCCcEEEEcC
Q psy4626 128 ----EVIRTVDIVVTAT 140 (542)
Q Consensus 128 ----e~l~~aDvVi~at 140 (542)
+.+..+|+||+||
T Consensus 188 ~~l~~~~~~aDivINaT 204 (288)
T PRK12749 188 QAFAEALASADILTNGT 204 (288)
T ss_pred hhhhhhcccCCEEEECC
Confidence 2456789999987
No 386
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.96 E-value=0.021 Score=66.13 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=57.5
Q ss_pred cEEEEEcCChhHHHHHHHHH-hCCCEEEEEeCCchhhhhhh-----------cCC-------------ceeeCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQAC-----------MDG-------------FSVVKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A~-----------~~G-------------~~v~~l~e~l~~ 132 (542)
++|+|+|.|.+|.++|..+. ..|.+|+++|+++..+..+. ..| ....+--+.+++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 384 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFKD 384 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhcc
Confidence 58999999999999999887 58999999999986433221 111 111111245789
Q ss_pred CcEEEEcCCC-----cccCCHHHHhccCCCeEEE-eccC
Q psy4626 133 VDIVVTATGN-----KNVVTREHMDKMKNGCVVC-NMGH 165 (542)
Q Consensus 133 aDvVi~atG~-----~~lI~~e~l~~mk~Gailv-nvG~ 165 (542)
||+||++.-. ..++ ++.-+.+++.+++. |++.
T Consensus 385 adlViEav~E~l~~K~~v~-~~l~~~~~~~~ilasnTS~ 422 (699)
T TIGR02440 385 VDIVIEAVFEDLALKHQMV-KDIEQECAAHTIFASNTSS 422 (699)
T ss_pred CCEEEEeccccHHHHHHHH-HHHHhhCCCCcEEEeCCCC
Confidence 9999998531 1122 22334568888887 5554
No 387
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.95 E-value=0.032 Score=56.87 Aligned_cols=92 Identities=24% Similarity=0.252 Sum_probs=69.4
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC------HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK------LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~------l~e----~l--~~aDvVi~at 140 (542)
...|.+|+|.|.|.+|..+++.+++.|++|++++.++.+...+...|.. +++ ..+ .. +++|+++++.
T Consensus 158 ~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 237 (336)
T cd08276 158 LKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVG 237 (336)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECC
Confidence 4578999999999999999999999999999998887766555444543 211 112 12 3699999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
|.. .+ ...++.+++++.++.+|..+
T Consensus 238 ~~~-~~-~~~~~~l~~~G~~v~~g~~~ 262 (336)
T cd08276 238 GPG-TL-AQSIKAVAPGGVISLIGFLS 262 (336)
T ss_pred ChH-HH-HHHHHhhcCCCEEEEEccCC
Confidence 743 34 36789999999999988653
No 388
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.95 E-value=0.028 Score=52.74 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=49.2
Q ss_pred EEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCCC
Q psy4626 80 VVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATGN 142 (542)
Q Consensus 80 VvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG~ 142 (542)
|+|+|. |.+|+.+++.|...|.+|++.-+++.+... ..+.+++ + +.++++++|+||.+.|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 689996 999999999999999999999999887664 4455433 2 34567899999998763
No 389
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.95 E-value=0.028 Score=57.67 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=55.7
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--------------eCHHHHhcCCcEEEEcCCCcc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNKN 144 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--------------~~l~e~l~~aDvVi~atG~~~ 144 (542)
+++|+|+|.+|..+|..|...|.+|+++++ +.+.......|..+ .+.++....+|++|.|+-+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~ 80 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ 80 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence 699999999999999999999999999998 55443333334321 123344578999999875433
Q ss_pred cCCHHHHh----ccCCCeEEEec
Q psy4626 145 VVTREHMD----KMKNGCVVCNM 163 (542)
Q Consensus 145 lI~~e~l~----~mk~Gailvnv 163 (542)
+ .+.++ .++++..++++
T Consensus 81 ~--~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 81 L--DAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred H--HHHHHHHHhhcCCCCEEEEe
Confidence 2 22333 34567777655
No 390
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.94 E-value=0.027 Score=61.92 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=51.4
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-----hhhhcCCceeeCH--HHHhcCCcEEEEcCCCcc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVVKL--NEVIRTVDIVVTATGNKN 144 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-----~~A~~~G~~v~~l--~e~l~~aDvVi~atG~~~ 144 (542)
...+++|+|+|.|.+|+.+|..|+..|.+|+++|.++... ......|+.+..- .+....+|+||.++|.++
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 4678999999999999999999999999999999665311 1123446554311 113456999999988654
No 391
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.94 E-value=0.03 Score=58.64 Aligned_cols=67 Identities=25% Similarity=0.286 Sum_probs=49.0
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CC------ceee-CHHHHhcCCcEEEEcCCC
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DG------FSVV-KLNEVIRTVDIVVTATGN 142 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G------~~v~-~l~e~l~~aDvVi~atG~ 142 (542)
.+++|+|+|+|.||..+|..+...|. ++.++|++..++. .+.. +. ..+. +..+.+++||+||.+.|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 57899999999999999999998887 8999999876542 1111 11 1111 123568999999998774
No 392
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.93 E-value=0.03 Score=62.71 Aligned_cols=68 Identities=22% Similarity=0.189 Sum_probs=49.5
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhh-hcCCceeeCHHHH---h-cCCcEEEEcC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVVKLNEV---I-RTVDIVVTAT 140 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A-~~~G~~v~~l~e~---l-~~aDvVi~at 140 (542)
..+.+++++|+|.|.+|+.++..|...|++|+++++++.++... ...+....+.++. . ..+|+||.||
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT 447 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTT 447 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecc
Confidence 35679999999999999999999999999999999987765432 2223233333321 2 3578888776
No 393
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.91 E-value=0.017 Score=60.35 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=57.6
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCCcee----------eC-HH--HHhcC
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGFSV----------VK-LN--EVIRT 132 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G~~v----------~~-l~--e~l~~ 132 (542)
-++|+|+|+|.+|.++|..+...|..|.++|+++..+..+. ..|.-. ++ .. ..+++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~ 82 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD 82 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence 46899999999999999999887799999999965432221 111100 00 01 15689
Q ss_pred CcEEEEcCC-Cc----ccCCHHHHhccCCCeEEE-eccC
Q psy4626 133 VDIVVTATG-NK----NVVTREHMDKMKNGCVVC-NMGH 165 (542)
Q Consensus 133 aDvVi~atG-~~----~lI~~e~l~~mk~Gailv-nvG~ 165 (542)
||+||++.- +. .++ ++.=...++.+++. |+++
T Consensus 83 ~DlVIEAv~E~levK~~vf-~~l~~~~~~~aIlASNTSs 120 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF-AELEALAKPDAILASNTSS 120 (307)
T ss_pred CCEEEEeccccHHHHHHHH-HHHHhhcCCCcEEeeccCC
Confidence 999999752 21 222 22333458899988 6664
No 394
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.90 E-value=0.016 Score=54.19 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=58.7
Q ss_pred cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEEEEcCCCcccCC---HH
Q psy4626 74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT---RE 149 (542)
Q Consensus 74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvVi~atG~~~lI~---~e 149 (542)
...|++|++|||= | ++..++..+.+|.++|++|....+. ..++.....++++..||+++.+.-+ ++| .+
T Consensus 8 ~~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~~-~~~~~~~~~~~~l~~aD~viiTGsT--lvN~Ti~~ 80 (147)
T PF04016_consen 8 IGPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGEE-PGDVPDEDAEEILPWADVVIITGST--LVNGTIDD 80 (147)
T ss_dssp TTTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--SS-CT-EEGGGHHHHGGG-SEEEEECHH--CCTTTHHH
T ss_pred hcCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCCC-CCcCCHHHHHHHHccCCEEEEEeee--eecCCHHH
Confidence 3579999999964 5 6778888899999999999653321 2233334456788999999875322 343 35
Q ss_pred HHhccCCCeEEEeccCC
Q psy4626 150 HMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 150 ~l~~mk~GailvnvG~g 166 (542)
.++..+++..++-.|-.
T Consensus 81 iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 81 ILELARNAREVILYGPS 97 (147)
T ss_dssp HHHHTTTSSEEEEESCC
T ss_pred HHHhCccCCeEEEEecC
Confidence 78888889999988864
No 395
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.89 E-value=0.024 Score=64.93 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=33.1
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
.|++|+|||.|+.|+.+|..|+..|.+|+++|..+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 59999999999999999999999999999999776
No 396
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=95.86 E-value=0.025 Score=56.59 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=67.4
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc-eeeC-----HHHHh--cCCcEEEEcCCCcc
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SVVK-----LNEVI--RTVDIVVTATGNKN 144 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~-~v~~-----l~e~l--~~aDvVi~atG~~~ 144 (542)
...|++++|.|. |.+|..+++.++..|++|+++..++ +...+...|. .+.+ ..+.. ...|++++++|..
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~- 219 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE- 219 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCchH-
Confidence 457999999996 9999999999999999999987666 5544444453 1221 11111 4589999998876
Q ss_pred cCCHHHHhccCCCeEEEeccCCC
Q psy4626 145 VVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 145 lI~~e~l~~mk~GailvnvG~g~ 167 (542)
.+ ...++.+++++.++.+|..+
T Consensus 220 ~~-~~~~~~l~~~g~~v~~g~~~ 241 (309)
T cd05289 220 TL-ARSLALVKPGGRLVSIAGPP 241 (309)
T ss_pred HH-HHHHHHHhcCcEEEEEcCCC
Confidence 33 46889999999999988654
No 397
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.85 E-value=0.078 Score=53.52 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=66.7
Q ss_pred HHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHH------HHh--cCC
Q psy4626 64 IDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLN------EVI--RTV 133 (542)
Q Consensus 64 ~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~------e~l--~~a 133 (542)
++++.+.. ....|.+|+|.|. |.+|..+++.++..|++|++++.+ .+...+...|.. +.+.. ... ++.
T Consensus 132 ~~~~~~~~-~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 209 (319)
T cd08267 132 LQALRDAG-KVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKY 209 (319)
T ss_pred HHHHHHhc-CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCC
Confidence 44443332 2457999999997 999999999999999999998754 444444445542 22211 111 468
Q ss_pred cEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 134 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 134 DvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
|++++|+|....-.......+++++.++..|..+
T Consensus 210 d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~ 243 (319)
T cd08267 210 DVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGP 243 (319)
T ss_pred cEEEECCCchHHHHHHhhhccCCCCEEEEecccc
Confidence 9999998742111112233489999999988653
No 398
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.81 E-value=0.047 Score=57.36 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=48.8
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhh-------cCCc--ee---eCHHHHhcCCcEEEEcC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QAC-------MDGF--SV---VKLNEVIRTVDIVVTAT 140 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~-------~~G~--~v---~~l~e~l~~aDvVi~at 140 (542)
+..++|+|+|+|.+|..+|..+...|. +|+++|+++.++. ++. ..+. .+ .+. +.+++||+||.+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999988885 9999999997531 111 1111 11 123 5789999999987
Q ss_pred CC
Q psy4626 141 GN 142 (542)
Q Consensus 141 G~ 142 (542)
|.
T Consensus 83 g~ 84 (321)
T PTZ00082 83 GL 84 (321)
T ss_pred CC
Confidence 64
No 399
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.79 E-value=0.026 Score=57.32 Aligned_cols=82 Identities=12% Similarity=0.177 Sum_probs=54.6
Q ss_pred EEEEEcC-ChhHHHHHHHHHhC-CCEEEE-EeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhcc
Q psy4626 79 QVVLCGY-GEVGKGCCQSLKGL-GCVIYI-TEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKM 154 (542)
Q Consensus 79 tVvViG~-G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~m 154 (542)
+|+|+|+ |.+|+.+++.+... ++++.. +|+++.+.......++. +.++++++..+|+||++|. +.....-....+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~~~al 81 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENLEFAL 81 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHHHHHH
Confidence 7999998 99999999988764 677554 88877654322222332 3567777888999999873 333322334455
Q ss_pred CCCeEEE
Q psy4626 155 KNGCVVC 161 (542)
Q Consensus 155 k~Gailv 161 (542)
+.|.-++
T Consensus 82 ~~G~~vv 88 (257)
T PRK00048 82 EHGKPLV 88 (257)
T ss_pred HcCCCEE
Confidence 6666555
No 400
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=95.78 E-value=0.12 Score=51.98 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=68.4
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----H----HHHh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----L----NEVI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l----~e~l--~~aDvVi~at 140 (542)
...|++++|.|. |.+|..+++.++..|++|++++.++.+...+...|.. +.+ . .+.. ++.|+++++.
T Consensus 142 ~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 221 (325)
T cd08253 142 AKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVL 221 (325)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECC
Confidence 347999999995 9999999999999999999999888776655555542 111 1 1122 4689999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|... + ...++.+++++.++++|..
T Consensus 222 ~~~~-~-~~~~~~l~~~g~~v~~~~~ 245 (325)
T cd08253 222 ANVN-L-AKDLDVLAPGGRIVVYGSG 245 (325)
T ss_pred chHH-H-HHHHHhhCCCCEEEEEeec
Confidence 7653 2 3567888999999998864
No 401
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.76 E-value=0.071 Score=53.77 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=71.9
Q ss_pred HHHHHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HH----HHh-
Q psy4626 63 IIDSLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LN----EVI- 130 (542)
Q Consensus 63 ~~~ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~----e~l- 130 (542)
.++++.+.. ....+++++|.|. |.+|+.+++.++..|++|++++.++.+...+...|.. +.+ .. +..
T Consensus 132 a~~~~~~~~-~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 210 (328)
T cd08268 132 AYGALVELA-GLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITG 210 (328)
T ss_pred HHHHHHHhc-CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhC
Confidence 344443322 2357899999997 9999999999999999999998877665544444432 111 11 122
Q ss_pred -cCCcEEEEcCCCcccCCHHHHhccCCCeEEEeccCCC
Q psy4626 131 -RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 131 -~~aDvVi~atG~~~lI~~e~l~~mk~GailvnvG~g~ 167 (542)
+..|+++++.|.. .. .+.++.+++++.++..|..+
T Consensus 211 ~~~~d~vi~~~~~~-~~-~~~~~~l~~~g~~v~~g~~~ 246 (328)
T cd08268 211 GKGVDVVFDPVGGP-QF-AKLADALAPGGTLVVYGALS 246 (328)
T ss_pred CCCceEEEECCchH-hH-HHHHHhhccCCEEEEEEeCC
Confidence 3699999998873 33 36788999999999888643
No 402
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.76 E-value=0.015 Score=56.87 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=34.0
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+..++|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4678999999999999999999999998 999999874
No 403
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=95.73 E-value=0.018 Score=67.01 Aligned_cols=86 Identities=17% Similarity=0.289 Sum_probs=59.2
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhh-----------cCC-------------ce-eeCHHHHhcC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDG-------------FS-VVKLNEVIRT 132 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~-----------~~G-------------~~-v~~l~e~l~~ 132 (542)
++|+|+|.|.+|.++|..+...|.+|+++|+++..+..+. ..| .. ..++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 5899999999999999999999999999999986543321 111 00 1122 35689
Q ss_pred CcEEEEcCC-C----cccCCHHHHhccCCCeEEE-eccC
Q psy4626 133 VDIVVTATG-N----KNVVTREHMDKMKNGCVVC-NMGH 165 (542)
Q Consensus 133 aDvVi~atG-~----~~lI~~e~l~~mk~Gailv-nvG~ 165 (542)
||+||++.- + ..++ ++.=+.+++++++. |++.
T Consensus 415 aDlViEAv~E~l~~K~~vf-~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVI-KEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred CCeehhhccccHHHHHHHH-HHHHhhCCCCcEEEEcCCC
Confidence 999999852 1 1222 23334578999988 5554
No 404
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.73 E-value=0.019 Score=60.29 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=48.4
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCC-CEEEEEeCCchhhh-hhh-------cCCc--ee---eCHHHHhcCCcEEEEcC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICAL-QAC-------MDGF--SV---VKLNEVIRTVDIVVTAT 140 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~G-a~Viv~d~dp~r~~-~A~-------~~G~--~v---~~l~e~l~~aDvVi~at 140 (542)
...++|+|+|+|.+|..++..+...| .++.++|+++.++. ++. ..+. .+ .+. +.+++||+||.+.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEECC
Confidence 35679999999999999999998888 69999999886532 111 0111 11 123 3779999999988
Q ss_pred CC
Q psy4626 141 GN 142 (542)
Q Consensus 141 G~ 142 (542)
|.
T Consensus 82 g~ 83 (319)
T PTZ00117 82 GV 83 (319)
T ss_pred CC
Confidence 64
No 405
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.73 E-value=0.028 Score=65.15 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=58.2
Q ss_pred cEEEEEcCChhHHHHHHHHH-hCCCEEEEEeCCchhhhhhh-----------cCCc-------------e-eeCHHHHhc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQAC-----------MDGF-------------S-VVKLNEVIR 131 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~-~~Ga~Viv~d~dp~r~~~A~-----------~~G~-------------~-v~~l~e~l~ 131 (542)
++|+|+|+|.+|.++|..+. ..|.+|+++|+++.....+. ..|. . ..++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 78999999999986543321 1110 0 1122 4568
Q ss_pred CCcEEEEcCCC-----cccCCHHHHhccCCCeEEEeccC
Q psy4626 132 TVDIVVTATGN-----KNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 132 ~aDvVi~atG~-----~~lI~~e~l~~mk~GailvnvG~ 165 (542)
+||+||++.-- ..++ ++.=+.+++++++.+..+
T Consensus 389 ~aDlViEav~E~~~~K~~v~-~~le~~~~~~~ilasnTS 426 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV-AEVEQNCAPHTIFASNTS 426 (708)
T ss_pred cCCEEeecccccHHHHHHHH-HHHHhhCCCCcEEEECCC
Confidence 99999998531 1222 223345689999984433
No 406
>PRK08324 short chain dehydrogenase; Validated
Probab=95.71 E-value=0.022 Score=65.68 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=36.7
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL 114 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~ 114 (542)
.+.|++++|+|. |.||+.+++.+...|++|+++++++.+..
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~ 460 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE 460 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH
Confidence 457899999995 99999999999999999999999887654
No 407
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.68 E-value=0.03 Score=61.59 Aligned_cols=92 Identities=16% Similarity=0.269 Sum_probs=64.0
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCC--chhhhhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID--PICALQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVT 147 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~d--p~r~~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~ 147 (542)
..+.|++|+|+|.|.++..=++.|...|++|+|+-.+ +.-...+....+.... ..+-++++++||.||+++. +|
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-~n 86 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-VN 86 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH-Hh
Confidence 3578999999999999988888888999999998432 2211111111222221 1345689999999998764 56
Q ss_pred HHHHhccCCCeEEEeccC
Q psy4626 148 REHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~ 165 (542)
.+.....+..++++|+.-
T Consensus 87 ~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 87 QRVSEAAEARRIFCNVVD 104 (457)
T ss_pred HHHHHHHHHcCcEEEECC
Confidence 566666777889999873
No 408
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=95.66 E-value=0.12 Score=52.49 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=67.5
Q ss_pred cccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCH------H---HHh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKL------N---EVI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l------~---e~l--~~aDvVi~at 140 (542)
...|++++|.|.+ .+|+.+++.++..|++|++++.++.+...+...+.. ..+. + +.. .+.|+++++.
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 243 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHV 243 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECC
Confidence 4578999999996 899999999999999999998887766555444432 1211 1 111 3689999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.. .+ .+.++.+++++.++++|..
T Consensus 244 g~~-~~-~~~~~~l~~~G~~v~~~~~ 267 (342)
T cd08266 244 GAA-TW-EKSLKSLARGGRLVTCGAT 267 (342)
T ss_pred cHH-HH-HHHHHHhhcCCEEEEEecC
Confidence 764 33 3678899999999998854
No 409
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.65 E-value=0.047 Score=62.69 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=32.8
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
.|++|+|||.|+.|..+|..|+..|.+|+++|.++
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999999999999999999999999999765
No 410
>PRK13529 malate dehydrogenase; Provisional
Probab=95.64 E-value=0.094 Score=58.74 Aligned_cols=122 Identities=18% Similarity=0.290 Sum_probs=85.0
Q ss_pred HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh----CCC-------EEEEEeCCc---------
Q psy4626 54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEIDP--------- 110 (542)
Q Consensus 54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~----~Ga-------~Viv~d~dp--------- 110 (542)
|...||+-.++.++. +.++..+...+++++|+|.-|.++|..+.. .|+ +++.+|..-
T Consensus 269 DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l 348 (563)
T PRK13529 269 DDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDL 348 (563)
T ss_pred cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence 555577755544433 445677889999999999999999998876 688 788887642
Q ss_pred --hhhhhhhcCCc--------eeeCHHHHhcCC--cEEEEcCCCcccCCHHHHhccCC---CeEEEeccCCCc--ccChH
Q psy4626 111 --ICALQACMDGF--------SVVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSNT--EIDVN 173 (542)
Q Consensus 111 --~r~~~A~~~G~--------~v~~l~e~l~~a--DvVi~atG~~~lI~~e~l~~mk~---GailvnvG~g~~--eid~~ 173 (542)
.+...|..... ...++.++++.+ |++|-+++..++++++.++.|.+ .-+|.-.+.... |+..+
T Consensus 349 ~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe 428 (563)
T PRK13529 349 LDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPE 428 (563)
T ss_pred hHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHH
Confidence 22222332110 114678888765 99999998889999999999976 666666665543 66655
Q ss_pred hh
Q psy4626 174 SL 175 (542)
Q Consensus 174 aL 175 (542)
..
T Consensus 429 ~a 430 (563)
T PRK13529 429 DL 430 (563)
T ss_pred HH
Confidence 44
No 411
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.62 E-value=0.018 Score=60.89 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=34.1
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+.+++|+|+|+|.+|..+|..|...|. +++++|.|.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4678999999999999999999999998 899999875
No 412
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.62 E-value=0.063 Score=57.59 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=62.6
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCc---------------------e-eeCHHHHhcCCcE
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---------------------S-VVKLNEVIRTVDI 135 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~---------------------~-v~~l~e~l~~aDv 135 (542)
.++.|+|.|.+|+..+..+..+|-+|+.+|+|+.+-..- ..|. . +.+.+++++.+|+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~l-n~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv 79 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELL-NKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADV 79 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-hCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence 368999999999999999999999999999999774321 1121 1 2234567789999
Q ss_pred EEEcCCCcccCC------------HHHHhccCCCeEEEeccC
Q psy4626 136 VVTATGNKNVVT------------REHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 136 Vi~atG~~~lI~------------~e~l~~mk~GailvnvG~ 165 (542)
+|.|+||+.--+ ++..+.++..+++++=+.
T Consensus 80 ~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST 121 (414)
T COG1004 80 VFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST 121 (414)
T ss_pred EEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence 999998764422 233445556577776544
No 413
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.62 E-value=0.059 Score=59.63 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=61.0
Q ss_pred cEEEEEcCChhHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcCC-------------------ce-eeCHHHHhcCCcE
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDG-------------------FS-VVKLNEVIRTVDI 135 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~--Ga~Viv~d~dp~r~~~A~~~G-------------------~~-v~~l~e~l~~aDv 135 (542)
.+|+|+|.|.+|...|..+... |.+|+.+|+++.+...-...+ .. ..+..++++.+|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 4799999999999999999876 578999999998754321111 11 1224556789999
Q ss_pred EEEcCCCccc---------CC--------HHHHhccCCCeEEEeccCC
Q psy4626 136 VVTATGNKNV---------VT--------REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 136 Vi~atG~~~l---------I~--------~e~l~~mk~GailvnvG~g 166 (542)
+|.|.+|+.- .+ ++.-+.+++|.+++.-+..
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv 129 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV 129 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 9999887631 11 1233456888888855543
No 414
>KOG1197|consensus
Probab=95.58 E-value=0.18 Score=51.38 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=73.4
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC--HH----HHh-----cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK--LN----EVI-----RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~--l~----e~l-----~~aDvVi~at 140 (542)
..+|.+|+|.- +|-+|+.+.|.|+..|+.++.+-....+...|.+.|++ .++ -+ ++. ++.|++.+..
T Consensus 144 vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsv 223 (336)
T KOG1197|consen 144 VKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSV 223 (336)
T ss_pred CCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccc
Confidence 46888888765 59999999999999999999988777888889999987 222 22 222 6899999988
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCCCc
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHSNT 168 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g~~ 168 (542)
|.. .+ +..++.+|+++.+++.|-.+.
T Consensus 224 G~d-t~-~~sl~~Lk~~G~mVSfG~asg 249 (336)
T KOG1197|consen 224 GKD-TF-AKSLAALKPMGKMVSFGNASG 249 (336)
T ss_pred cch-hh-HHHHHHhccCceEEEeccccC
Confidence 753 33 367899999999999887653
No 415
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.58 E-value=0.02 Score=51.66 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=49.2
Q ss_pred EEEEEcC-ChhHHHHHHHHHh-CCCEE-EEEeCCchhhh--------hhhcCCcee-eCHHHHhcCCcEEEEcCCCcccC
Q psy4626 79 QVVLCGY-GEVGKGCCQSLKG-LGCVI-YITEIDPICAL--------QACMDGFSV-VKLNEVIRTVDIVVTATGNKNVV 146 (542)
Q Consensus 79 tVvViG~-G~IG~~vA~~l~~-~Ga~V-iv~d~dp~r~~--------~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI 146 (542)
+|+|+|+ |++|+.+++.+.. -|+++ -++++.+.... .....|+.+ .++++++..+|++|+.| ++..+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~ 80 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV 80 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence 6999999 9999999999988 67774 44676651100 011233333 35778888899999988 44444
Q ss_pred CHHHHhc-cCCCeEEE
Q psy4626 147 TREHMDK-MKNGCVVC 161 (542)
Q Consensus 147 ~~e~l~~-mk~Gailv 161 (542)
. +.++. ++.|.-++
T Consensus 81 ~-~~~~~~~~~g~~~V 95 (124)
T PF01113_consen 81 Y-DNLEYALKHGVPLV 95 (124)
T ss_dssp H-HHHHHHHHHT-EEE
T ss_pred H-HHHHHHHhCCCCEE
Confidence 3 34443 34455444
No 416
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.57 E-value=0.038 Score=60.95 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=52.9
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCCceeeC---HHHHhcCCcEEEEcCCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVVK---LNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G~~v~~---l~e~l~~aDvVi~atG~~ 143 (542)
.+.+++|+|+|+|..|+++|+.|+..|++|+++|.++..... ....|+.+.. ..+.+.++|+||-.+|-+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~ 85 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWR 85 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence 567899999999999999999999999999999976554322 2334665432 234467889999887754
No 417
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=95.57 E-value=0.13 Score=51.77 Aligned_cols=90 Identities=22% Similarity=0.258 Sum_probs=67.3
Q ss_pred cccCcEEEEEc-CChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC----HHH----Hh--cCCcEEEEcCC
Q psy4626 74 MFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK----LNE----VI--RTVDIVVTATG 141 (542)
Q Consensus 74 ~l~GktVvViG-~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~----l~e----~l--~~aDvVi~atG 141 (542)
...|.+++|.| .|.+|..+++.++.+|++|+++..+ .+...+...|.. +.+ ..+ .. ++.|++++++|
T Consensus 142 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~ 220 (326)
T cd08272 142 VQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVG 220 (326)
T ss_pred CCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCC
Confidence 45799999999 6999999999999999999998866 655555445543 111 111 12 36899999988
Q ss_pred CcccCCHHHHhccCCCeEEEeccCC
Q psy4626 142 NKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
... + .+.++.+++++.++..|..
T Consensus 221 ~~~-~-~~~~~~l~~~g~~v~~~~~ 243 (326)
T cd08272 221 GET-L-DASFEAVALYGRVVSILGG 243 (326)
T ss_pred hHH-H-HHHHHHhccCCEEEEEecC
Confidence 743 4 3678999999999988754
No 418
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.57 E-value=0.22 Score=51.98 Aligned_cols=120 Identities=19% Similarity=0.277 Sum_probs=77.4
Q ss_pred cccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCC---hhHHHHHHHHHhCCCEEEEEe
Q psy4626 35 GKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITE 107 (542)
Q Consensus 35 ~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G---~IG~~vA~~l~~~Ga~Viv~d 107 (542)
....+||||.-+. ++-.+.|-. .+.+..+ .+.|.+|+++|-| ++....+..+..+|++|.++-
T Consensus 114 ~~s~vPVINa~~g~~~HPtQ~LaDl~---------Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~ 183 (301)
T TIGR00670 114 EVSEVPVINAGDGSNQHPTQTLLDLY---------TIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLIS 183 (301)
T ss_pred hhCCCCEEeCCCCCCCCcHHHHHHHH---------HHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEEC
Confidence 3457799988542 233333321 2222222 4789999999995 889999999999999999986
Q ss_pred CCchh-----hhhhhcCCce---eeCHHHHhcCCcEEEEcCCC---------------cccCCHHHHhccCCCeEEEecc
Q psy4626 108 IDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATGN---------------KNVVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 108 ~dp~r-----~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~---------------~~lI~~e~l~~mk~GailvnvG 164 (542)
+.... ...+...|.. ..+++++++++|||....-. +--++.+.++.+++++++.-+.
T Consensus 184 P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 184 PEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred CccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 43331 1223334544 34678999999999985311 2234456677777777766555
No 419
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.57 E-value=0.065 Score=54.70 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=64.6
Q ss_pred cCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh-h-----hcCCce-eeCHHHHh-cCCcEEEEcCC
Q psy4626 71 TDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ-A-----CMDGFS-VVKLNEVI-RTVDIVVTATG 141 (542)
Q Consensus 71 ~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A-----~~~G~~-v~~l~e~l-~~aDvVi~atG 141 (542)
++..++..+|+|+|+ |.||..+|+.+.+.+.+....-++..++.+ + ...|.. +++++..+ ...++|+.++-
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 467889999999999 999999999999999988887766654321 1 123333 44555544 44455555543
Q ss_pred C-cccCCHHHHhccCCCeEEEeccCC
Q psy4626 142 N-KNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~-~~lI~~e~l~~mk~GailvnvG~g 166 (542)
. -..|..++ +|+|+.++.-|+.
T Consensus 241 ~~g~~I~pq~---lkpg~~ivD~g~P 263 (351)
T COG5322 241 PKGVEIFPQH---LKPGCLIVDGGYP 263 (351)
T ss_pred CCCceechhh---ccCCeEEEcCCcC
Confidence 3 34565544 7999999998864
No 420
>KOG2380|consensus
Probab=95.55 E-value=0.021 Score=59.91 Aligned_cols=89 Identities=15% Similarity=0.253 Sum_probs=64.7
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHh-cCCcEEEEcCCCcc---cCCHHH
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVI-RTVDIVVTATGNKN---VVTREH 150 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l-~~aDvVi~atG~~~---lI~~e~ 150 (542)
+-.+++|+|+|..|+..|..+-..|-.|++++++.+... +...|.. ...+.+++ +.+|+|+-|+..-+ ++..--
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssa-a~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatyp 129 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSA-AEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYP 129 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHH-HHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcC
Confidence 456899999999999999999999999999998775443 3444543 44555665 78999999885322 222223
Q ss_pred HhccCCCeEEEeccC
Q psy4626 151 MDKMKNGCVVCNMGH 165 (542)
Q Consensus 151 l~~mk~GailvnvG~ 165 (542)
++.+|.|.+++.+-+
T Consensus 130 fqrlrrgtlfvdvlS 144 (480)
T KOG2380|consen 130 FQRLRRGTLFVDVLS 144 (480)
T ss_pred chhhccceeEeeeee
Confidence 566888888876554
No 421
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=95.52 E-value=0.059 Score=54.26 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=68.1
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|++++|.|. |.+|..+++.++..|++|+++..++.+...+...|.. +.+ ..+ .. ++.|+++++.
T Consensus 137 ~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 216 (325)
T TIGR02824 137 LKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIV 216 (325)
T ss_pred CCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECC
Confidence 457899999996 8999999999999999999998887766555445542 111 111 11 3599999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
|.. .+ ...++.+++++.++.+|..
T Consensus 217 ~~~-~~-~~~~~~l~~~g~~v~~g~~ 240 (325)
T TIGR02824 217 GGS-YL-NRNIKALALDGRIVQIGFQ 240 (325)
T ss_pred chH-HH-HHHHHhhccCcEEEEEecC
Confidence 864 33 3678889999999998864
No 422
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.50 E-value=0.053 Score=55.76 Aligned_cols=76 Identities=22% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCccccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhcCCceeeCHHHH-hcCCcEEE
Q psy4626 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDGFSVVKLNEV-IRTVDIVV 137 (542)
Q Consensus 61 ~s~~~ai~r~~~~~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~~G~~v~~l~e~-l~~aDvVi 137 (542)
.+++.++++. +. ..+++++|+|+|-.++.++..|+..|+ +|+++++++.+... +...+.... ++. ...+|+||
T Consensus 108 ~Gf~~~L~~~-~~-~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvI 183 (272)
T PRK12550 108 IAIAKLLASY-QV-PPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILV 183 (272)
T ss_pred HHHHHHHHhc-CC-CCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEE
Confidence 3445555443 22 246799999999999999999999998 79999999977643 222232211 111 24689999
Q ss_pred EcC
Q psy4626 138 TAT 140 (542)
Q Consensus 138 ~at 140 (542)
.||
T Consensus 184 NaT 186 (272)
T PRK12550 184 NVT 186 (272)
T ss_pred ECC
Confidence 987
No 423
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.47 E-value=0.061 Score=58.44 Aligned_cols=68 Identities=21% Similarity=0.411 Sum_probs=48.6
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh----hhhhcCCceee---CHHHHhcC-CcEEEEcCCC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVV---KLNEVIRT-VDIVVTATGN 142 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~----~~A~~~G~~v~---~l~e~l~~-aDvVi~atG~ 142 (542)
+.|++++|+|.|.+|+.+|+.|+..|++|+++|.++... ......|..+. ...+.+.. +|+||..+|-
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi 78 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGI 78 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCC
Confidence 468999999999999999999999999999999765321 11123355432 12233443 8999887763
No 424
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.46 E-value=0.093 Score=54.73 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=46.1
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhhc-------CCc--ee---eCHHHHhcCCcEEEEcCCCc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACM-------DGF--SV---VKLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~~-------~G~--~v---~~l~e~l~~aDvVi~atG~~ 143 (542)
++|.|+|.|.+|..+|..+...|. +|+++|+++.... ++.. ... .+ .+.++ ++++|+||.|.|++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 479999999999999999988775 8999998765332 1110 011 11 23444 78999999998853
No 425
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.40 E-value=0.046 Score=59.93 Aligned_cols=68 Identities=25% Similarity=0.394 Sum_probs=51.1
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh----hhhhcCCceeeC---HHHHhcCCcEEEEcCCCc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVVK---LNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~----~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~ 143 (542)
.+++|+|+|+|.-|+.+++.|+..|++|+++|.+|.-. ......+..+.. ..+.+..+|+||..+|-+
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIP 80 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCC
Confidence 49999999999999999999999999999999877551 112234444332 124467899999988743
No 426
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.38 E-value=0.12 Score=58.00 Aligned_cols=121 Identities=16% Similarity=0.246 Sum_probs=84.6
Q ss_pred HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh-----CCC-------EEEEEeCCc--------
Q psy4626 54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG-----LGC-------VIYITEIDP-------- 110 (542)
Q Consensus 54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~-----~Ga-------~Viv~d~dp-------- 110 (542)
|...||+-.++.++. +.++..+...+++++|+|.-|.++|+.+.. .|. +++++|...
T Consensus 295 DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~ 374 (581)
T PLN03129 295 DDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKD 374 (581)
T ss_pred cccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCc
Confidence 555577655544433 445677888999999999999999988876 476 788777543
Q ss_pred ----hhhhhhhcCCceeeCHHHHhcC--CcEEEEcCCCcccCCHHHHhccC---CCeEEEeccCCC--cccChHhh
Q psy4626 111 ----ICALQACMDGFSVVKLNEVIRT--VDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSN--TEIDVNSL 175 (542)
Q Consensus 111 ----~r~~~A~~~G~~v~~l~e~l~~--aDvVi~atG~~~lI~~e~l~~mk---~GailvnvG~g~--~eid~~aL 175 (542)
.+...|.. .-+..++.++++. +|++|-+++..++++++.++.|. +.-+|.-.+... .|+..+..
T Consensus 375 ~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a 449 (581)
T PLN03129 375 SLQPFKKPFAHD-HEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEA 449 (581)
T ss_pred cChHHHHHHHhh-cccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHH
Confidence 12222322 2234578899877 99999999888899999999995 556666666543 46665544
No 427
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.36 E-value=0.026 Score=55.84 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=33.7
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+..++|+|+|+|.+|..+|..|...|. +++++|.|.
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4678899999999999999999999999 799999883
No 428
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.36 E-value=0.032 Score=46.00 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=30.8
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCch
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI 111 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~ 111 (542)
+|+|+|.|.+|..+|..++.+|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998774
No 429
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.36 E-value=0.024 Score=56.11 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=64.4
Q ss_pred ccccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhh--hhcCCceeeC--H-HHHhcCCcEEEEcCCCcccCC
Q psy4626 73 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ--ACMDGFSVVK--L-NEVIRTVDIVVTATGNKNVVT 147 (542)
Q Consensus 73 ~~l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~--A~~~G~~v~~--l-~e~l~~aDvVi~atG~~~lI~ 147 (542)
..+.|++|+|+|.|.+|..=++.+...|++|+|+-.+...... +...+..... . .+.+..+++||.||.+.. ++
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~-ln 86 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEE-LN 86 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHH-HH
Confidence 3578999999999999999999999999999998644411111 1111211111 1 123456999999998754 56
Q ss_pred HHHHhccCCCeEEEeccC
Q psy4626 148 REHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 148 ~e~l~~mk~GailvnvG~ 165 (542)
.+.+...++-++++|+.-
T Consensus 87 ~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 87 ERIAKAARERRILVNVVD 104 (210)
T ss_pred HHHHHHHHHhCCceeccC
Confidence 677778888889999873
No 430
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.36 E-value=0.032 Score=51.13 Aligned_cols=86 Identities=12% Similarity=0.185 Sum_probs=54.7
Q ss_pred EEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH--------------H-HHhcCCcEEEEcCCCcc
Q psy4626 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL--------------N-EVIRTVDIVVTATGNKN 144 (542)
Q Consensus 80 VvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l--------------~-e~l~~aDvVi~atG~~~ 144 (542)
++|+|.|.||...|..|+..|.+|.++.+.+ +...-...|..+... . .....+|+||.|+-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence 6899999999999999999999999999877 444333334432211 1 24578999999975433
Q ss_pred cCC--HHHHhccCCCeEEEeccCC
Q psy4626 145 VVT--REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 145 lI~--~e~l~~mk~GailvnvG~g 166 (542)
+-. ...-..+.+.+.++..--|
T Consensus 80 ~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 80 LEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp HHHHHHHHCTGEETTEEEEEESSS
T ss_pred hHHHHHHHhhccCCCcEEEEEeCC
Confidence 321 1222334566566654433
No 431
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.34 E-value=0.067 Score=58.00 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=50.8
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC--Cceee-----CHH---H-HhcCCcEEEEcCCC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GFSVV-----KLN---E-VIRTVDIVVTATGN 142 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~--G~~v~-----~l~---e-~l~~aDvVi~atG~ 142 (542)
...++++|+|+|++|+.+++.|...|.+|+++|.+|.+....... ++.++ +.+ + .+.++|.|+.+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 457899999999999999999999999999999999875544332 44332 121 1 23678888887654
No 432
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=95.32 E-value=0.15 Score=57.19 Aligned_cols=123 Identities=17% Similarity=0.255 Sum_probs=85.3
Q ss_pred HhHHHHHHHHHHHHH---hhcCccccCcEEEEEcCChhHHHHHHHHHh----CCC-------EEEEEeCC----------
Q psy4626 54 DNLYMCRESIIDSLK---RSTDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEID---------- 109 (542)
Q Consensus 54 d~~~g~~~s~~~ai~---r~~~~~l~GktVvViG~G~IG~~vA~~l~~----~Ga-------~Viv~d~d---------- 109 (542)
|...||+-.++.++. |.++..+...+++++|+|.-|.++|..+.. .|. +++.+|..
T Consensus 271 DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~ 350 (559)
T PTZ00317 271 DDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDK 350 (559)
T ss_pred ccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence 555577655544433 445677889999999999999999988873 687 78888743
Q ss_pred --chhhhhhhcC-Cce---eeCHHHHhcCC--cEEEEcCCCcccCCHHHHhccCC---CeEEEeccCCC--cccChHhhc
Q psy4626 110 --PICALQACMD-GFS---VVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSN--TEIDVNSLR 176 (542)
Q Consensus 110 --p~r~~~A~~~-G~~---v~~l~e~l~~a--DvVi~atG~~~lI~~e~l~~mk~---GailvnvG~g~--~eid~~aL~ 176 (542)
+.+...|+.. ... ..++.++++.+ |++|-+++.+++++++.++.|.+ .-+|.-.+... .|+..+...
T Consensus 351 l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~ 430 (559)
T PTZ00317 351 LAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAY 430 (559)
T ss_pred ccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHH
Confidence 2233334432 111 45788888766 99999998889999999999974 56666666553 466655443
No 433
>KOG1201|consensus
Probab=95.30 E-value=0.11 Score=53.73 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=51.9
Q ss_pred cCccccCcEEEEEcCCh-hHHHHHHHHHhCCCEEEEEeCCchhhhh----hhcCC---cee---eCHHHH----------
Q psy4626 71 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ----ACMDG---FSV---VKLNEV---------- 129 (542)
Q Consensus 71 ~~~~l~GktVvViG~G~-IG~~vA~~l~~~Ga~Viv~d~dp~r~~~----A~~~G---~~v---~~l~e~---------- 129 (542)
.....+|++|+|.|.|. +|+.+|.-+..+|+++++||+++.-..+ ....| +.+ .+.+++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHh
Confidence 33568999999999985 8999999999999999999999864432 22223 122 333432
Q ss_pred hcCCcEEEEcCC
Q psy4626 130 IRTVDIVVTATG 141 (542)
Q Consensus 130 l~~aDvVi~atG 141 (542)
....|++|+..|
T Consensus 112 ~G~V~ILVNNAG 123 (300)
T KOG1201|consen 112 VGDVDILVNNAG 123 (300)
T ss_pred cCCceEEEeccc
Confidence 357899999766
No 434
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.29 E-value=0.047 Score=58.27 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=56.3
Q ss_pred EEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc----CCceee-----C---HHHHhcCCcEEEEcCCCccc
Q psy4626 80 VVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM----DGFSVV-----K---LNEVIRTVDIVVTATGNKNV 145 (542)
Q Consensus 80 VvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~----~G~~v~-----~---l~e~l~~aDvVi~atG~~~l 145 (542)
|+|+|+|.+|+.+++.|...+- +|++.|+++.++..... ..+... + +.++++++|+||+|.|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence 6899999999999999998874 89999999988654322 233322 2 345678999999998764
Q ss_pred CCHHHHh-ccCCCeEEEecc
Q psy4626 146 VTREHMD-KMKNGCVVCNMG 164 (542)
Q Consensus 146 I~~e~l~-~mk~GailvnvG 164 (542)
.+...++ .++.|.-.++++
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS
T ss_pred hhHHHHHHHHHhCCCeeccc
Confidence 3333333 357788888855
No 435
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.28 E-value=0.049 Score=55.28 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=57.5
Q ss_pred EEEEcC-ChhHHHHHHHHHhCC----CEEEEEeCCchhhhhhhc-------C--Ccee---eCHHHHhcCCcEEEEcCCC
Q psy4626 80 VVLCGY-GEVGKGCCQSLKGLG----CVIYITEIDPICALQACM-------D--GFSV---VKLNEVIRTVDIVVTATGN 142 (542)
Q Consensus 80 VvViG~-G~IG~~vA~~l~~~G----a~Viv~d~dp~r~~~A~~-------~--G~~v---~~l~e~l~~aDvVi~atG~ 142 (542)
|+|+|+ |.+|..++..+...| .++..+|+++.++....+ . ...+ .++.+.+++||+||.+.|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 579999 999999999998888 699999998865432111 0 1111 2346788999999997753
Q ss_pred ccc---------------CC--HHHHhccCCCeEEEecc
Q psy4626 143 KNV---------------VT--REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 143 ~~l---------------I~--~e~l~~mk~GailvnvG 164 (542)
+.. +. .+.++...+.+++++++
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 211 11 22344445888888885
No 436
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.28 E-value=0.031 Score=49.43 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=50.0
Q ss_pred cCChhHHHHHHHHHhC----CCEEE-EEeCCch--hhhhh-hcCCceeeCHHHHhc--CCcEEEEcCCCcccCCHHHHhc
Q psy4626 84 GYGEVGKGCCQSLKGL----GCVIY-ITEIDPI--CALQA-CMDGFSVVKLNEVIR--TVDIVVTATGNKNVVTREHMDK 153 (542)
Q Consensus 84 G~G~IG~~vA~~l~~~----Ga~Vi-v~d~dp~--r~~~A-~~~G~~v~~l~e~l~--~aDvVi~atG~~~lI~~e~l~~ 153 (542)
|+|.||+.++..+... +.+|. ++++++. ..... ......+.++++++. ..|+||+|++...+. .-..+.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-~~~~~~ 79 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-EYYEKA 79 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-HHHHHH
Confidence 8999999999999876 56544 4566611 11111 122334567788876 899999997764433 345667
Q ss_pred cCCCeEEEeccCC
Q psy4626 154 MKNGCVVCNMGHS 166 (542)
Q Consensus 154 mk~GailvnvG~g 166 (542)
|+.|.-++...-+
T Consensus 80 L~~G~~VVt~nk~ 92 (117)
T PF03447_consen 80 LERGKHVVTANKG 92 (117)
T ss_dssp HHTTCEEEES-HH
T ss_pred HHCCCeEEEECHH
Confidence 8888888865533
No 437
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.043 Score=59.43 Aligned_cols=84 Identities=19% Similarity=0.123 Sum_probs=54.6
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhccC
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK 155 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~mk 155 (542)
.++|+|+|.|.+|..+|+.|+..|.+|+++|.++............ ....+....++|+||.++|.+.. +...-+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~-~~~l~~A~~ 81 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKE-HPWVQAAIA 81 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCC-cHHHHHHHH
Confidence 4689999999999999999999999999999776432211000000 11222334779999999886532 333334445
Q ss_pred CCeEEE
Q psy4626 156 NGCVVC 161 (542)
Q Consensus 156 ~Gailv 161 (542)
.|+.++
T Consensus 82 ~g~~vv 87 (418)
T PRK00683 82 SHIPVV 87 (418)
T ss_pred CCCcEE
Confidence 665543
No 438
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.18 E-value=0.27 Score=51.49 Aligned_cols=119 Identities=24% Similarity=0.340 Sum_probs=76.3
Q ss_pred hcccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcC---ChhHHHHHHHHHhCCCEEEEE
Q psy4626 34 AGKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYIT 106 (542)
Q Consensus 34 ~~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~---G~IG~~vA~~l~~~Ga~Viv~ 106 (542)
.....+||||.-+. ++-.+.|-. .+.+..+ .+.|.+|+++|- |++....+..+..+|++|.++
T Consensus 119 a~~~~vPVINa~~g~~~HPtQ~LaDl~---------Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~ 188 (305)
T PRK00856 119 AESSDVPVINAGDGSHQHPTQALLDLL---------TIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLI 188 (305)
T ss_pred HHHCCCCEEECCCCCCCCcHHHHHHHH---------HHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEE
Confidence 34467889888542 333333311 1222222 478999999998 488999999999999999998
Q ss_pred eCCchhhhhhhcCCce-eeCHHHHhcCCcEEEEcCCC-----------------cccCCHHHHhccCCCeEEEecc
Q psy4626 107 EIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGN-----------------KNVVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 107 d~dp~r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~-----------------~~lI~~e~l~~mk~GailvnvG 164 (542)
-+....... ...+. ..+++++++++|+|.+.... .-.++.+.++.+++++++.-+.
T Consensus 189 ~P~~~~~~~--~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcL 262 (305)
T PRK00856 189 APPTLLPEG--MPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPG 262 (305)
T ss_pred CCcccCccc--ccceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCC
Confidence 643332111 11122 34678999999999986421 2335566677777777766544
No 439
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.15 E-value=0.037 Score=51.14 Aligned_cols=65 Identities=26% Similarity=0.242 Sum_probs=46.6
Q ss_pred EEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc-------CCce---eeCHHHHhcCCcEEEEcCCCc
Q psy4626 79 QVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM-------DGFS---VVKLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 79 tVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~-------~G~~---v~~l~e~l~~aDvVi~atG~~ 143 (542)
+|+|+|+ |.+|..+|..|...|. ++..+|+++.++. ++.. .... .....+.+++||+||.+.|.+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 7999999 9999999999987665 8999999875432 1111 1111 123456788999999988864
No 440
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.15 E-value=0.042 Score=57.33 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=47.2
Q ss_pred EEEEEcCChhHHHHHHHHHhCC--CEEEEEeCCchhhh-hhhc--CCcee-------eCHHHHhcCCcEEEEcCCCc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICAL-QACM--DGFSV-------VKLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~G--a~Viv~d~dp~r~~-~A~~--~G~~v-------~~l~e~l~~aDvVi~atG~~ 143 (542)
+|+|+|.|.+|..+|..+...| -+|.++|+++.++. ++.. ..... ....+.+++||++|.|.|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 6999999999999999999989 48999999886543 2211 11111 11235578999999988753
No 441
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.06 E-value=0.097 Score=54.21 Aligned_cols=63 Identities=25% Similarity=0.212 Sum_probs=43.8
Q ss_pred EEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhh-hhh-------cCCc--eee--CHHHHhcCCcEEEEcCCC
Q psy4626 80 VVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QAC-------MDGF--SVV--KLNEVIRTVDIVVTATGN 142 (542)
Q Consensus 80 VvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~-~A~-------~~G~--~v~--~l~e~l~~aDvVi~atG~ 142 (542)
|+|+|+|.+|..+|..+...|. +|+++|+++.++. ++. ..+. .+. .-.+.+++||+||.+.|.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence 5899999999999999886665 9999999986532 110 0111 111 113458999999998764
No 442
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.05 E-value=0.4 Score=50.11 Aligned_cols=131 Identities=19% Similarity=0.175 Sum_probs=83.8
Q ss_pred hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
.....+||||.-+.. -+. -|++.+ .+.+..+ .+.|.+|+++|- +.+-+..+..+..+|++|.++-+..
T Consensus 116 a~~~~vPVINag~~~-~HP-------tQaL~Dl~Ti~e~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~ 186 (304)
T PRK00779 116 AEYSTVPVINGLTDL-SHP-------CQILADLLTIYEHRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKG 186 (304)
T ss_pred HHhCCCCEEeCCCCC-CCh-------HHHHHHHHHHHHHhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcc
Confidence 445678999886531 111 133322 2333223 478999999998 6788888999999999999985433
Q ss_pred hhhh-----h-hhcCCce---eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHhccCCCeEEEeccC
Q psy4626 111 ICAL-----Q-ACMDGFS---VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 111 ~r~~-----~-A~~~G~~---v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
.... + +...|.. ..+++++++++|+|.... + ..--++.+.++.+|+++++.-.+-
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP 266 (304)
T PRK00779 187 YEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLP 266 (304)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCC
Confidence 2211 0 3334533 346889999999999852 1 123456677888888888877665
Q ss_pred C--CcccChH
Q psy4626 166 S--NTEIDVN 173 (542)
Q Consensus 166 g--~~eid~~ 173 (542)
. ..|++-+
T Consensus 267 ~~R~~Ei~~~ 276 (304)
T PRK00779 267 AHRGEEVTDE 276 (304)
T ss_pred ccCCCcccHH
Confidence 2 3454443
No 443
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.04 E-value=0.051 Score=56.27 Aligned_cols=64 Identities=25% Similarity=0.290 Sum_probs=45.5
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCchhhhh-hhc--C-----Cc--ee---eCHHHHhcCCcEEEEcCCC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM--D-----GF--SV---VKLNEVIRTVDIVVTATGN 142 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp~r~~~-A~~--~-----G~--~v---~~l~e~l~~aDvVi~atG~ 142 (542)
++|+|+|.|.+|..+|..+...|. +|+++|+++.++.. +.. + +. .+ .+. +.+++||+||.+.|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~ 80 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV 80 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence 589999999999999999987764 99999998865421 110 1 11 11 122 457899999998764
No 444
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.051 Score=59.43 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=50.6
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCH-HHHhcCCcEEEEcCCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL-NEVIRTVDIVVTATGNK 143 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l-~e~l~~aDvVi~atG~~ 143 (542)
+.|++|.|+|.|..|..+|+.|+..|++|.++|..+.........|+.+... .+.+.++|+||-++|-+
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~ 76 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVP 76 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCC
Confidence 5689999999999999999999999999999997654332223346543322 23356799999877643
No 445
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.00 E-value=0.086 Score=54.77 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=57.3
Q ss_pred EEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhh-hh------cC-Cc-eee--CHHHHhcCCcEEEEcCCCcccC
Q psy4626 80 VVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC------MD-GF-SVV--KLNEVIRTVDIVVTATGNKNVV 146 (542)
Q Consensus 80 VvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~-A~------~~-G~-~v~--~l~e~l~~aDvVi~atG~~~lI 146 (542)
+.|+|+|.||..+|..+...|. +++++|+++.++.. +. .. .. .+. +-.+.+++||+||.|.|.+.--
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~ 80 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP 80 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence 5799999999999999998884 89999998865431 11 10 10 111 1135789999999998853211
Q ss_pred --C---------------HHHHhccCCCeEEEeccC
Q psy4626 147 --T---------------REHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 147 --~---------------~e~l~~mk~GailvnvG~ 165 (542)
+ .+.+..-.+.+++++++-
T Consensus 81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 1 123334457888888883
No 446
>PLN02527 aspartate carbamoyltransferase
Probab=94.99 E-value=0.42 Score=50.02 Aligned_cols=121 Identities=21% Similarity=0.247 Sum_probs=74.4
Q ss_pred hcccccceeecCch----hhhHHHHhHHHHHHHHHHHHHhhcCccccCcEEEEEcCC---hhHHHHHHHHHhC-CCEEEE
Q psy4626 34 AGKLTVPAMNVNDS----VTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG---EVGKGCCQSLKGL-GCVIYI 105 (542)
Q Consensus 34 ~~~L~~PV~~vn~s----~~K~~fd~~~g~~~s~~~ai~r~~~~~l~GktVvViG~G---~IG~~vA~~l~~~-Ga~Viv 105 (542)
.....+||||.-+. ++-.+.|-. .+.+..+ .+.|.+|+++|-+ ++....+..+..+ |++|.+
T Consensus 114 a~~~~vPVINa~~g~~~HPtQ~LaDl~---------Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~ 183 (306)
T PLN02527 114 AATAEIPVINAGDGPGQHPTQALLDVY---------TIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYF 183 (306)
T ss_pred HHhCCCCEEECCCCCCCChHHHHHHHH---------HHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEE
Confidence 34467799988442 333333321 2222222 3789999999976 5778888887777 999988
Q ss_pred EeCCchh-----hhhhhcCCce---eeCHHHHhcCCcEEEEcCCC----------------cccCCHHHHhccCCCeEEE
Q psy4626 106 TEIDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATGN----------------KNVVTREHMDKMKNGCVVC 161 (542)
Q Consensus 106 ~d~dp~r-----~~~A~~~G~~---v~~l~e~l~~aDvVi~atG~----------------~~lI~~e~l~~mk~Gailv 161 (542)
+-+.... ...+...|.. ..+++++++++|||.+.... .-.++.+.++..++++++.
T Consensus 184 ~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivm 263 (306)
T PLN02527 184 VAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVM 263 (306)
T ss_pred ECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEE
Confidence 7543321 1123334443 34788999999999985321 1234455566667777666
Q ss_pred ecc
Q psy4626 162 NMG 164 (542)
Q Consensus 162 nvG 164 (542)
-+.
T Consensus 264 Hcl 266 (306)
T PLN02527 264 HPL 266 (306)
T ss_pred CCC
Confidence 444
No 447
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=94.85 E-value=0.34 Score=48.29 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=67.5
Q ss_pred cccCcEEEEE-cCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvVi-G~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|.+|+|. |.|.+|..+++.++++|++|+++..++.+...+...|.+ +++ ..+ .. .+.|+++++.
T Consensus 118 ~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~ 197 (303)
T cd08251 118 LAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTL 197 (303)
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECC
Confidence 4578999996 468999999999999999999998777666655555643 221 211 12 4689999988
Q ss_pred CCcccCCHHHHhccCCCeEEEeccCC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~g 166 (542)
+.. .+ .+.++.+++++.+++.|..
T Consensus 198 ~~~-~~-~~~~~~l~~~g~~v~~~~~ 221 (303)
T cd08251 198 SGE-AI-QKGLNCLAPGGRYVEIAMT 221 (303)
T ss_pred cHH-HH-HHHHHHhccCcEEEEEecc
Confidence 653 34 3678889999999998864
No 448
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.12 Score=52.22 Aligned_cols=88 Identities=20% Similarity=0.307 Sum_probs=64.0
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeCHHHHh---cCCcEEEEcC--C--CcccCCHHH
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVI---RTVDIVVTAT--G--NKNVVTREH 150 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~l~e~l---~~aDvVi~at--G--~~~lI~~e~ 150 (542)
+++.||.|.+|..+++++...|-.|+++|++|.....+...|+. +.++++.+ ..+-+|-.-. | +..+++ +.
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~l 80 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-DL 80 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-HH
Confidence 67899999999999999999999999999999887777777765 44566653 4445554421 2 333442 44
Q ss_pred HhccCCCeEEEeccCCC
Q psy4626 151 MDKMKNGCVVCNMGHSN 167 (542)
Q Consensus 151 l~~mk~GailvnvG~g~ 167 (542)
-..|..|-++|.-|-..
T Consensus 81 a~~L~~GDivIDGGNS~ 97 (300)
T COG1023 81 APLLSAGDIVIDGGNSN 97 (300)
T ss_pred HhhcCCCCEEEECCccc
Confidence 55677888888877654
No 449
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.83 E-value=0.056 Score=57.94 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=59.7
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-ee--CHH------------------HHhcCCcEE
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VV--KLN------------------EVIRTVDIV 136 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~--~l~------------------e~l~~aDvV 136 (542)
.+++|+|.|-||+-+|..+...|.+|+.+|+++.+-.. ...|.. .. +++ +.++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~-ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDK-LNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHH-HhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence 79999999999999999999999999999999976542 223322 11 122 223589999
Q ss_pred EEcCCCcccC----C--------HHHHhccCCCeEEEeccC
Q psy4626 137 VTATGNKNVV----T--------REHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 137 i~atG~~~lI----~--------~e~l~~mk~GailvnvG~ 165 (542)
+.|.-|+--- + +..-..|++|..++--+.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST 129 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST 129 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 9986432111 0 223456899998885444
No 450
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=94.83 E-value=0.48 Score=49.55 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=82.9
Q ss_pred hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
.....+||||..+. .-+. -|++.+ .+.+..+ .+.|.+|+++|- +.+-+..+..+..+|++|.++-+..
T Consensus 112 a~~~~vPVINa~~~-~~HP-------tQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~ 182 (304)
T TIGR00658 112 AKYASVPVINGLTD-LFHP-------CQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEG 182 (304)
T ss_pred HHhCCCCEEECCCC-CCCh-------HHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCch
Confidence 44677899998653 1111 122322 2333333 378999999998 5677888889999999999986433
Q ss_pred hhhh-----h----hhcCCce---eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHhccCCCeEEEe
Q psy4626 111 ICAL-----Q----ACMDGFS---VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMDKMKNGCVVCN 162 (542)
Q Consensus 111 ~r~~-----~----A~~~G~~---v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~~mk~Gailvn 162 (542)
.... + +...|.. ..+++++++++|+|.... + ..-.++.+.++.+|+++++.-
T Consensus 183 ~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmH 262 (304)
T TIGR00658 183 YEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMH 262 (304)
T ss_pred hcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEEC
Confidence 2211 1 2334532 347889999999999843 1 122566777888888888776
Q ss_pred ccCC--CcccChH
Q psy4626 163 MGHS--NTEIDVN 173 (542)
Q Consensus 163 vG~g--~~eid~~ 173 (542)
.+-- +.|++-+
T Consensus 263 plP~~rg~Ei~~~ 275 (304)
T TIGR00658 263 CLPAHRGEEVTDE 275 (304)
T ss_pred CCCCCCCceeCHH
Confidence 6643 2344433
No 451
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.81 E-value=0.045 Score=57.96 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=34.0
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+..++|+|+|+|-+|..+|..|...|. +++++|.|.
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4678899999999999999999999999 999999874
No 452
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.79 E-value=0.098 Score=55.45 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=53.2
Q ss_pred EEEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCchhhh-hhhcCCc------------------eee-CHHHHhcCCcEE
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICAL-QACMDGF------------------SVV-KLNEVIRTVDIV 136 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~r~~-~A~~~G~------------------~v~-~l~e~l~~aDvV 136 (542)
+|+|+|+|.||+.+++.+... +++++. +|.+|.... .+...|+ .+. ++++++.++|+|
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence 799999999999999988754 677665 565553222 1222222 121 345666789999
Q ss_pred EEcCCCcccCCHHHHhccCCCeEEEeccC
Q psy4626 137 VTATGNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 137 i~atG~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
++||+..... ...-..++.|..++..|.
T Consensus 83 IdaT~~~~~~-e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 83 VDATPGGVGA-KNKELYEKAGVKAIFQGG 110 (341)
T ss_pred EECCCchhhH-HHHHHHHHCCCEEEEcCC
Confidence 9998763222 122334566777765554
No 453
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.77 E-value=0.043 Score=58.76 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=33.6
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCC
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID 109 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~d 109 (542)
.+.+++|+|+|+|.+|..++..|...|+ +++++|.|
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999999999999999 89999987
No 454
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.14 Score=51.23 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=35.5
Q ss_pred ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626 75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL 114 (542)
Q Consensus 75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~ 114 (542)
+.|++++|.|. |.||+.+++.|...|++|+++++++.+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 44 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA 44 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57899999998 88999999999999999999999876543
No 455
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.74 E-value=0.11 Score=49.63 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=29.7
Q ss_pred EEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
+|+|+|+|.+|..++..|...|. +++++|.|.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 799999876
No 456
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.072 Score=56.63 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=50.8
Q ss_pred CcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce---ee---CHHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VV---KLNEVIRTVDIVVTATGNKNVVTREH 150 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~---v~---~l~e~l~~aDvVi~atG~~~lI~~e~ 150 (542)
+++|+|+|.|-.|+.++..++.+|.+|++.|.++........+..- .. .+.++...||+|.---.+ ++.+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~---V~~~a 77 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFEN---VPAEA 77 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeecc---CCHHH
Confidence 4799999999999999999999999999999877653321111111 11 245667889988542222 33455
Q ss_pred HhccC
Q psy4626 151 MDKMK 155 (542)
Q Consensus 151 l~~mk 155 (542)
++.+.
T Consensus 78 L~~l~ 82 (375)
T COG0026 78 LEKLA 82 (375)
T ss_pred HHHHH
Confidence 55553
No 457
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.69 E-value=0.11 Score=54.30 Aligned_cols=86 Identities=17% Similarity=0.310 Sum_probs=56.7
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CCc------eee---CHHHHhcCCcEEEEcCCCc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DGF------SVV---KLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G~------~v~---~l~e~l~~aDvVi~atG~~ 143 (542)
.+|+|+|+|.||..+|..+...|. ++..+|+++.++. ++.. +.. .+. +. +.+++||+||.+.|.+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy-~~~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY-SVTANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH-HHhCCCCEEEECCCCC
Confidence 489999999999999999887775 7999998775432 1111 111 111 23 3489999999987742
Q ss_pred cc--CCH---------------HHHhccCCCeEEEecc
Q psy4626 144 NV--VTR---------------EHMDKMKNGCVVCNMG 164 (542)
Q Consensus 144 ~l--I~~---------------e~l~~mk~GailvnvG 164 (542)
.. .++ +.+....+.+++++++
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 21 111 2233345778888877
No 458
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.63 E-value=0.082 Score=53.99 Aligned_cols=84 Identities=15% Similarity=0.229 Sum_probs=52.2
Q ss_pred EEEEEcCChhHHHHHHHHHhC-CCEEEE-EeCCch--hhhhhhcCCce-eeCHHHHhcCCcEEEEcCCCcccCCHHHHhc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPI--CALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK 153 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~-Ga~Viv-~d~dp~--r~~~A~~~G~~-v~~l~e~l~~aDvVi~atG~~~lI~~e~l~~ 153 (542)
+|+|+|+|.||+.+++.+... ++++.. ++.+.. +.......+.. +.+++++-..+|+|++|++..... .-....
T Consensus 3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~-e~~~~a 81 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALK-EHVVPI 81 (265)
T ss_pred EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHH-HHHHHH
Confidence 799999999999999998765 555433 443322 11111112333 345666545699999999865332 345566
Q ss_pred cCCCeEEEec
Q psy4626 154 MKNGCVVCNM 163 (542)
Q Consensus 154 mk~Gailvnv 163 (542)
++.|.-++..
T Consensus 82 L~aGk~Vvi~ 91 (265)
T PRK13303 82 LKAGIDCAVI 91 (265)
T ss_pred HHcCCCEEEe
Confidence 7777666543
No 459
>PRK06182 short chain dehydrogenase; Validated
Probab=94.61 E-value=0.13 Score=51.64 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=46.7
Q ss_pred cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee-----eCHH---HHh-------cCCcEEEEc
Q psy4626 76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLN---EVI-------RTVDIVVTA 139 (542)
Q Consensus 76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v-----~~l~---e~l-------~~aDvVi~a 139 (542)
.+++++|+|. |.||+.+++.+...|++|+++++++.+.......+..+ .+.+ +++ .+.|++|.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ 81 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN 81 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4789999997 88999999999999999999998876654332233322 2221 222 267888887
Q ss_pred CC
Q psy4626 140 TG 141 (542)
Q Consensus 140 tG 141 (542)
.|
T Consensus 82 ag 83 (273)
T PRK06182 82 AG 83 (273)
T ss_pred CC
Confidence 66
No 460
>PLN02602 lactate dehydrogenase
Probab=94.56 E-value=0.14 Score=54.48 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=46.5
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhh-hhhc--CC------ceeeC--HHHHhcCCcEEEEcCCC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DG------FSVVK--LNEVIRTVDIVVTATGN 142 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~-~A~~--~G------~~v~~--l~e~l~~aDvVi~atG~ 142 (542)
++|+|+|.|.||..+|..+...|. ++..+|+++.++. ++.. +. ..+.. --+.+++||+||.+.|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCC
Confidence 699999999999999999987775 7999999886542 1111 11 12211 12447999999998874
No 461
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.53 E-value=0.06 Score=57.75 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=33.9
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+..++|+|+|+|.+|..++..|...|. +++++|.|.
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4678899999999999999999999998 999999874
No 462
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.51 E-value=0.11 Score=57.18 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=48.2
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh-h--hhcCCceee---CHHHHhcCCcEEEEcCCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-Q--ACMDGFSVV---KLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~-~--A~~~G~~v~---~l~e~l~~aDvVi~atG~~ 143 (542)
+.|++|+|+|+|.-|+++|+.|+..|++|+++|.++.... . ....+.... ...+.+.++|+||..+|-+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~ 80 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGIS 80 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCC
Confidence 4589999999999999999999999999999996543211 1 111122211 1234567789999887743
No 463
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=0.11 Score=57.23 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=45.3
Q ss_pred cCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC-Cceee--CHHHHhcCCcEEEEcCCCc
Q psy4626 76 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVV--KLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 76 ~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~-G~~v~--~l~e~l~~aDvVi~atG~~ 143 (542)
.|++|+|+|+|.-|+++++.|+. |++|+++|..+......... ..... ...+.+.++|+||..+|-+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~ 74 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIP 74 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCC
Confidence 58999999999999999999995 99999999543322111110 11111 1223456899999987743
No 464
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.49 E-value=0.19 Score=52.19 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=56.4
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCcee--------------eCHHHHhcCCcEEEEcCCCc
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v--------------~~l~e~l~~aDvVi~atG~~ 143 (542)
.+++|+|.|.||..+|..|...|.+|+++.+++.... ...|... .+..+....+|+||.|+-..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAV--RENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHH--HhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 5899999999999999999999999999988774322 1222211 11122456789999997654
Q ss_pred ccCC--HHHHhccCCCeEEEecc
Q psy4626 144 NVVT--REHMDKMKNGCVVCNMG 164 (542)
Q Consensus 144 ~lI~--~e~l~~mk~GailvnvG 164 (542)
.+.. ...-..+++++.++..-
T Consensus 84 ~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 84 ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred ChHhHHHHHhhhcCCCCEEEEec
Confidence 4331 12223456677777653
No 465
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=94.48 E-value=0.5 Score=50.08 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=76.0
Q ss_pred hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCC
Q psy4626 34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEID 109 (542)
Q Consensus 34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~d 109 (542)
.....+||||..+. .-+. -|.+.+ .+.+..+..+.|.+|+++|-+ .+....+..+..+|++|.++-+.
T Consensus 119 a~~~~vPVINa~~~-~~HP-------tQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~ 190 (334)
T PRK01713 119 AEYAGVPVFNGLTD-EFHP-------TQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPK 190 (334)
T ss_pred HHhCCCCEEECCCC-CCCh-------HHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCc
Confidence 34567899998553 1111 122222 233332324789999999986 46788888889999999998643
Q ss_pred chhhh---------hhhcCCce---eeCHHHHhcCCcEEEEcC----CC-------------cccCCHHHHhcc-CCCeE
Q psy4626 110 PICAL---------QACMDGFS---VVKLNEVIRTVDIVVTAT----GN-------------KNVVTREHMDKM-KNGCV 159 (542)
Q Consensus 110 p~r~~---------~A~~~G~~---v~~l~e~l~~aDvVi~at----G~-------------~~lI~~e~l~~m-k~Gai 159 (542)
..... .+...|.. ..+++++++++|||...+ |. .-.++.+.++.. |++++
T Consensus 191 ~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~ai 270 (334)
T PRK01713 191 ALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVK 270 (334)
T ss_pred hhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCE
Confidence 22111 12223533 356889999999999843 21 122555667765 67777
Q ss_pred EEeccC
Q psy4626 160 VCNMGH 165 (542)
Q Consensus 160 lvnvG~ 165 (542)
+.-++-
T Consensus 271 vmH~lP 276 (334)
T PRK01713 271 FMHCLP 276 (334)
T ss_pred EECCCC
Confidence 776553
No 466
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.45 E-value=0.04 Score=51.17 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=35.5
Q ss_pred ehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCC
Q psy4626 303 KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN 345 (542)
Q Consensus 303 ~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~ 345 (542)
.++++.++|||+|++||....|..+. +|+|++++++|.--
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCccCHHH---cCCCCEEEEcCCCc
Confidence 56789999999999999999999876 79999999888654
No 467
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.11 Score=52.51 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=35.2
Q ss_pred cCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhh
Q psy4626 76 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ 115 (542)
Q Consensus 76 ~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~ 115 (542)
.+++++|+|. |.||+.+|+.+...|++|+++++++.+...
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAA 43 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3789999998 899999999999999999999988766543
No 468
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.41 E-value=0.12 Score=54.53 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=57.3
Q ss_pred cEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcC---------Cc------e-eeCHHHHhcCCcEEEEcCC
Q psy4626 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---------GF------S-VVKLNEVIRTVDIVVTATG 141 (542)
Q Consensus 78 ktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~---------G~------~-v~~l~e~l~~aDvVi~atG 141 (542)
.+|+|+|+|.+|..+|..|...| .|+.|.+++......... ++ . ..+++++++.+|+||.++-
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999988 688887777554322111 21 1 1245667889999999875
Q ss_pred CcccCC--HHHHhccCCCeEEEeccCC
Q psy4626 142 NKNVVT--REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 142 ~~~lI~--~e~l~~mk~GailvnvG~g 166 (542)
+..+-. ++.-..+++...++++.-|
T Consensus 87 s~~~~~vl~~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 SHGFRGVLTELAKELRPWVPVVSLVKG 113 (341)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence 433211 1222345667666655543
No 469
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.39 E-value=0.14 Score=52.87 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=46.5
Q ss_pred EEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceee-----C---HHHHhcCCcEEEEcCC
Q psy4626 79 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----K---LNEVIRTVDIVVTATG 141 (542)
Q Consensus 79 tVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~-----~---l~e~l~~aDvVi~atG 141 (542)
+|+|+|. |.||+.+++.|...|.+|++..+++.+.......+++++ + +.++++++|+||.+.+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 7999996 999999999999999999999887654322122344432 2 3456789999998754
No 470
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.38 E-value=0.13 Score=56.35 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=50.2
Q ss_pred ccCcEEEEEcCChhHHH-HHHHHHhCCCEEEEEeCCchhhh-hhhcCCceee--CHHHHhcCCcEEEEcCCC
Q psy4626 75 FGGKQVVLCGYGEVGKG-CCQSLKGLGCVIYITEIDPICAL-QACMDGFSVV--KLNEVIRTVDIVVTATGN 142 (542)
Q Consensus 75 l~GktVvViG~G~IG~~-vA~~l~~~Ga~Viv~d~dp~r~~-~A~~~G~~v~--~l~e~l~~aDvVi~atG~ 142 (542)
..++++.|+|.|..|.+ +|+.|+..|++|+++|.++.... .-...|..+. ...+.+.++|+||..+|-
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi 76 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAI 76 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCC
Confidence 46789999999999999 79999999999999998664321 1123355543 223445689999998774
No 471
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.38 E-value=0.17 Score=54.91 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=56.0
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhhcCCceeeC---HHHHhcCCcEEEEcCCCcccCCHHH
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSVVK---LNEVIRTVDIVVTATGNKNVVTREH 150 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~~~G~~v~~---l~e~l~~aDvVi~atG~~~lI~~e~ 150 (542)
+.++++.|+|.|..|+.+++.|+..|.+|+++|..+... ......|+.+.. ..+.++..|+||..+|-+.- +...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~-~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALA-HPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCC-CHHH
Confidence 357899999999999999999999999999999765422 111223554421 22345678999988775433 3333
Q ss_pred HhccCCCeEE
Q psy4626 151 MDKMKNGCVV 160 (542)
Q Consensus 151 l~~mk~Gail 160 (542)
.+.-+.|..+
T Consensus 83 ~~a~~~g~~v 92 (438)
T PRK03806 83 SAAADAGIEI 92 (438)
T ss_pred HHHHHCCCeE
Confidence 3333455444
No 472
>KOG0089|consensus
Probab=94.32 E-value=0.081 Score=53.94 Aligned_cols=104 Identities=26% Similarity=0.336 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCceeeCHHHHhcCCcEE
Q psy4626 58 MCRESIIDSLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136 (542)
Q Consensus 58 g~~~s~~~ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~v~~l~e~l~~aDvV 136 (542)
.|-.++|+-+.| ++..+.||+++|+|-- .+|+-+|..|..-|+++.=.|..-.. ....+...-.++...+.+|++
T Consensus 148 cTP~gv~eiL~r-~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt---i~hr~t~~~~lk~ht~~adiv 223 (309)
T KOG0089|consen 148 CTPLGVVEILER-TGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT---IFHRYTSKPQLKHHTRDADIV 223 (309)
T ss_pred CchHHHHHHHHH-hCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE---EEEcCCCchhHHHHHHhccee
Confidence 344567775555 4678999999999986 47999999999998876655421100 000000011124456889999
Q ss_pred EEcCCCcccCCHHHHhccCCCeEEEeccCCCc
Q psy4626 137 VTATGNKNVVTREHMDKMKNGCVVCNMGHSNT 168 (542)
Q Consensus 137 i~atG~~~lI~~e~l~~mk~GailvnvG~g~~ 168 (542)
|.+.|-+++|+. +.+|+|+.++++|...+
T Consensus 224 i~a~g~p~li~~---d~Ik~Ga~vidvgin~v 252 (309)
T KOG0089|consen 224 ISAVGIPNLITS---DMIKPGAAVIDVGINRV 252 (309)
T ss_pred ehhcCCCccccc---ceeecCceeEecCCCcc
Confidence 999999999975 45799999999996543
No 473
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.26 E-value=0.14 Score=53.54 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=58.3
Q ss_pred CcEEEEEcCChhHHHHHHHHH-hCCCEEE-EEeCCchhh--hhhhcCCcee--eCHHHHh-----cCCcEEEEcCCCccc
Q psy4626 77 GKQVVLCGYGEVGKGCCQSLK-GLGCVIY-ITEIDPICA--LQACMDGFSV--VKLNEVI-----RTVDIVVTATGNKNV 145 (542)
Q Consensus 77 GktVvViG~G~IG~~vA~~l~-~~Ga~Vi-v~d~dp~r~--~~A~~~G~~v--~~l~e~l-----~~aDvVi~atG~~~l 145 (542)
.-+++|||.|.||...+..+. .-++++. ++|+||... ..|...|... .+.++++ .+.|+|+++|++..-
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 357999999999988665555 4467655 578888632 3466677654 3567776 468999999876422
Q ss_pred CCHHHHhccCCCeEEEecc
Q psy4626 146 VTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 146 I~~e~l~~mk~GailvnvG 164 (542)
. .......+.|+.++.-.
T Consensus 84 ~-e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 V-RHAAKLREAGIRAIDLT 101 (302)
T ss_pred H-HHHHHHHHcCCeEEECC
Confidence 2 22344567888777544
No 474
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=94.24 E-value=0.71 Score=46.66 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=64.1
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhcCCce-eeC-----HHH----Hh--cCCcEEEEcC
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVK-----LNE----VI--RTVDIVVTAT 140 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~~G~~-v~~-----l~e----~l--~~aDvVi~at 140 (542)
...|.+++|.|. |.+|..+++.++..|++|++.- ++.+...+...|.. +.+ ..+ .. ++.|+++++.
T Consensus 139 ~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 217 (325)
T cd08271 139 IEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTV 217 (325)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECC
Confidence 357899999999 6799999999999999988765 55554444444543 211 111 12 3699999998
Q ss_pred CCcccCCHHHHhccCCCeEEEeccC
Q psy4626 141 GNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 141 G~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
|... . .+.++.+++.+.++..|.
T Consensus 218 ~~~~-~-~~~~~~l~~~G~~v~~~~ 240 (325)
T cd08271 218 GGET-A-AALAPTLAFNGHLVCIQG 240 (325)
T ss_pred CcHh-H-HHHHHhhccCCEEEEEcC
Confidence 8754 3 357899999999988763
No 475
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.23 E-value=0.19 Score=48.95 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=35.0
Q ss_pred ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhh
Q psy4626 75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICA 113 (542)
Q Consensus 75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~ 113 (542)
+.|++++|.|. |.||..+++.+...|++|+++++++.+.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~ 42 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKL 42 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56899999998 6799999999999999999999887654
No 476
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.21 E-value=0.18 Score=52.69 Aligned_cols=86 Identities=10% Similarity=0.127 Sum_probs=55.6
Q ss_pred EEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc--------CCc------e-eeCHHHHh-cCCcEEEEcCCC
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGF------S-VVKLNEVI-RTVDIVVTATGN 142 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~--------~G~------~-v~~l~e~l-~~aDvVi~atG~ 142 (542)
++.|+|+|.+|..++..|...|.+|.++++++.....-.. .+. . ..++++.+ ..+|++|.++-+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 5899999999999999999999999999988753321111 011 1 12345555 589999998755
Q ss_pred cccCCHHHHh-----ccCCCeEEEeccCC
Q psy4626 143 KNVVTREHMD-----KMKNGCVVCNMGHS 166 (542)
Q Consensus 143 ~~lI~~e~l~-----~mk~GailvnvG~g 166 (542)
..+- +.++ .+++...++...-|
T Consensus 82 ~~~~--~~l~~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 82 QQLR--TICQQLQDCHLKKNTPILICSKG 108 (326)
T ss_pred HHHH--HHHHHHHHhcCCCCCEEEEEEcC
Confidence 4332 2333 34455555544433
No 477
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.17 E-value=0.1 Score=52.95 Aligned_cols=89 Identities=18% Similarity=0.335 Sum_probs=59.4
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc----CCce---e--eCHHHH-h--cCCcEEEEcC
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM----DGFS---V--VKLNEV-I--RTVDIVVTAT 140 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~----~G~~---v--~~l~e~-l--~~aDvVi~at 140 (542)
..|++|+.+|+|. |..+...++..|. +|+.+|+++.....|.. .|+. + .++++. + ...|+|+...
T Consensus 76 ~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4799999999999 9877666666664 79999999977665543 2322 1 223322 1 2578888642
Q ss_pred ------CCcccCCHHHHhccCCCeEEEeccC
Q psy4626 141 ------GNKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 141 ------G~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
....++ .+.++.||+|++++..+.
T Consensus 155 v~~~~~d~~~~l-~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 VINLSPDKERVF-KEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cccCCCCHHHHH-HHHHHHcCCCcEEEEEEe
Confidence 122334 477888999999987553
No 478
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.15 E-value=0.17 Score=53.36 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=52.0
Q ss_pred EEEEEcCChhHHHHHHHHHh--------CCCEEE-EEeCCchhh----------hhhhcCC----ce--eeCHHHHh-cC
Q psy4626 79 QVVLCGYGEVGKGCCQSLKG--------LGCVIY-ITEIDPICA----------LQACMDG----FS--VVKLNEVI-RT 132 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~--------~Ga~Vi-v~d~dp~r~----------~~A~~~G----~~--v~~l~e~l-~~ 132 (542)
+|+|+|+|.||+.+++.+.. .+.+|+ ++|.+.... ......| +. ..++++++ ..
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 69999999999999999876 455644 456543110 0001101 11 12455554 57
Q ss_pred CcEEEEcCCCcc-cCC--HHHHhccCCCeEEEeccCC
Q psy4626 133 VDIVVTATGNKN-VVT--REHMDKMKNGCVVCNMGHS 166 (542)
Q Consensus 133 aDvVi~atG~~~-lI~--~e~l~~mk~GailvnvG~g 166 (542)
+|++|+|+++.. -.. .-..+.|+.|.-++...-+
T Consensus 82 ~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKg 118 (326)
T PRK06392 82 PDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKS 118 (326)
T ss_pred CCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHH
Confidence 899999986421 111 1225667888888865543
No 479
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=94.13 E-value=0.16 Score=55.91 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=33.2
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
..|++|+|||.|+.|..+|..|+..|.+|+++|..+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 468899999999999999999999999999999765
No 480
>PLN00106 malate dehydrogenase
Probab=94.13 E-value=0.23 Score=52.35 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=47.3
Q ss_pred cCcEEEEEcC-ChhHHHHHHHHHhCCC--EEEEEeCCchhhhhhhc--C-C--cee---eC---HHHHhcCCcEEEEcCC
Q psy4626 76 GGKQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACM--D-G--FSV---VK---LNEVIRTVDIVVTATG 141 (542)
Q Consensus 76 ~GktVvViG~-G~IG~~vA~~l~~~Ga--~Viv~d~dp~r~~~A~~--~-G--~~v---~~---l~e~l~~aDvVi~atG 141 (542)
..++|+|+|+ |.||..+|..|...|. ++..+|+++.+ .++.. + . ..+ .. ..+.++++|+||.+.|
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 4579999999 9999999999986665 89999998722 11211 0 1 111 12 2567899999999887
Q ss_pred Cc
Q psy4626 142 NK 143 (542)
Q Consensus 142 ~~ 143 (542)
.+
T Consensus 96 ~~ 97 (323)
T PLN00106 96 VP 97 (323)
T ss_pred CC
Confidence 53
No 481
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.11 E-value=0.07 Score=53.13 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=33.5
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+..++|+|+|+|.+|..+|..|...|. +++++|.|.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4678899999999999999999999999 899998765
No 482
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.11 E-value=0.12 Score=56.47 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=54.0
Q ss_pred EEEEEcCChhHHHHHHHHHhC----------CCE-EEEEeCCchhhhhhhcCCce-eeCHHHHh--cCCcEEEEcCCCcc
Q psy4626 79 QVVLCGYGEVGKGCCQSLKGL----------GCV-IYITEIDPICALQACMDGFS-VVKLNEVI--RTVDIVVTATGNKN 144 (542)
Q Consensus 79 tVvViG~G~IG~~vA~~l~~~----------Ga~-Viv~d~dp~r~~~A~~~G~~-v~~l~e~l--~~aDvVi~atG~~~ 144 (542)
+|+|+|+|.||+++++.+... +.+ +.++++++.+.......+.. +.+.++++ .+.|+|++++|...
T Consensus 5 ~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~~ 84 (426)
T PRK06349 5 KVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGIE 84 (426)
T ss_pred EEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCch
Confidence 799999999999998877432 344 44568777654321112222 34677877 46899999987532
Q ss_pred cCCHHHHhccCCCeEEEec
Q psy4626 145 VVTREHMDKMKNGCVVCNM 163 (542)
Q Consensus 145 lI~~e~l~~mk~Gailvnv 163 (542)
.-..-..+.|+.|.-++..
T Consensus 85 ~~~~~~~~aL~~GkhVVta 103 (426)
T PRK06349 85 PARELILKALEAGKHVVTA 103 (426)
T ss_pred HHHHHHHHHHHCCCeEEEc
Confidence 2112234677888777653
No 483
>PRK12742 oxidoreductase; Provisional
Probab=94.11 E-value=0.29 Score=47.64 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=30.4
Q ss_pred ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeC
Q psy4626 75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEI 108 (542)
Q Consensus 75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~ 108 (542)
+.|++++|.|. |.||+.+++.+...|++|++..+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 56899999997 89999999999999999988754
No 484
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.09 E-value=0.21 Score=54.37 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=49.6
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhh-hhhh---cCCceee--C-HHHHhcCCcEEEEcCCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQAC---MDGFSVV--K-LNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~-~~A~---~~G~~v~--~-l~e~l~~aDvVi~atG~~ 143 (542)
+.+++++|+|.|.+|..+|+.|+..|++|.++|.++... .... ..|+.+. . .+..+.++|+||..+|-+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 458899999999999999999999999999999766431 1111 1355432 1 223346789999988754
No 485
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.07 E-value=0.17 Score=57.20 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=50.2
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhhhhhc---------CC------cee-----eCH---HHH
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM---------DG------FSV-----VKL---NEV 129 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~A~~---------~G------~~v-----~~l---~e~ 129 (542)
...|++++|+|. |.||+.+++.|...|.+|+++.+++.+...... .| +.+ .+. .++
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 357899999998 899999999999999999999988766532110 11 111 122 235
Q ss_pred hcCCcEEEEcCCC
Q psy4626 130 IRTVDIVVTATGN 142 (542)
Q Consensus 130 l~~aDvVi~atG~ 142 (542)
+.++|+||.+.|.
T Consensus 157 LggiDiVVn~AG~ 169 (576)
T PLN03209 157 LGNASVVICCIGA 169 (576)
T ss_pred hcCCCEEEEcccc
Confidence 6789999998764
No 486
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.06 E-value=0.082 Score=54.30 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=33.6
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+.+++|+|+|.|.+|..+|..|...|. +++++|.|.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4678899999999999999999999996 999999874
No 487
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.01 E-value=0.22 Score=54.34 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=49.2
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCchhhh--hhhc--CCceee---CHHHHhcCCcEEEEcCCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL--QACM--DGFSVV---KLNEVIRTVDIVVTATGNK 143 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~--~A~~--~G~~v~---~l~e~l~~aDvVi~atG~~ 143 (542)
....+++|+|.|..|..+|+.|+..|++|+++|..+.... .-.. .|..+. ...+.+.++|+||..+|-+
T Consensus 4 ~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~ 79 (448)
T PRK03803 4 QSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLA 79 (448)
T ss_pred ccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCC
Confidence 3466899999999999999999999999999997653211 1111 255442 1234467889998887643
No 488
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=93.99 E-value=0.57 Score=44.16 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=66.9
Q ss_pred cCcEEEEEc--CChhHHHHHHHHHhCCCEEEEEeCCchh--h---------hhhhcCCc--e-eeCHHHHhcCCcEEEEc
Q psy4626 76 GGKQVVLCG--YGEVGKGCCQSLKGLGCVIYITEIDPIC--A---------LQACMDGF--S-VVKLNEVIRTVDIVVTA 139 (542)
Q Consensus 76 ~GktVvViG--~G~IG~~vA~~l~~~Ga~Viv~d~dp~r--~---------~~A~~~G~--~-v~~l~e~l~~aDvVi~a 139 (542)
.|.+|+++| .+++....+..+..+|+++.++-+...+ . ..+...|. . ..+++++++++|+|++.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 388999999 3799999999999999998888543321 1 01122232 2 34688999999999985
Q ss_pred CCC---------------cccCCHHHHhccCCCeEEEeccCC--CcccChH
Q psy4626 140 TGN---------------KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVN 173 (542)
Q Consensus 140 tG~---------------~~lI~~e~l~~mk~GailvnvG~g--~~eid~~ 173 (542)
.-. +-.++.+.++.+++++++.-.+-. +.|++-+
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~e 131 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDE 131 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHH
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHh
Confidence 421 145778889999999999887752 3455444
No 489
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.95 E-value=0.091 Score=55.99 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=34.0
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+..++|+|+|+|.+|..++..|...|. +++++|.|.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 4678999999999999999999999998 899998875
No 490
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.93 E-value=0.14 Score=61.24 Aligned_cols=36 Identities=17% Similarity=0.030 Sum_probs=33.1
Q ss_pred ccCcEEEEEcCChhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 75 l~GktVvViG~G~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
..|++|+|||+||-|+.+|..|+..|.+|+++|..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 359999999999999999999999999999999654
No 491
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=93.87 E-value=0.2 Score=53.14 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhCCCEEEEEeCCchh-----hhhhhcCCcee-eCHHHHhcCCcEEEEcCCCcccCC---HHHHhccCCCe
Q psy4626 88 VGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---REHMDKMKNGC 158 (542)
Q Consensus 88 IG~~vA~~l~~~Ga~Viv~d~dp~r-----~~~A~~~G~~v-~~l~e~l~~aDvVi~atG~~~lI~---~e~l~~mk~Ga 158 (542)
-|..+|..|...|.+|+++|+++.+ .......|..+ .+..++++++|+||.++.....+. ......++++.
T Consensus 31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~ 110 (342)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENA 110 (342)
T ss_pred CHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCC
Confidence 3688999999999999999998863 22344567664 356677899999999875433111 23456678999
Q ss_pred EEEeccCCC
Q psy4626 159 VVCNMGHSN 167 (542)
Q Consensus 159 ilvnvG~g~ 167 (542)
++++++.+.
T Consensus 111 IVId~ST~~ 119 (342)
T PRK12557 111 VICNTCTVS 119 (342)
T ss_pred EEEEecCCC
Confidence 999988775
No 492
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=93.83 E-value=0.43 Score=49.68 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=60.7
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhC-CC-EEEEEeCCchhhhhhhcCCce-eeC---------HHHH------hcCCc
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGL-GC-VIYITEIDPICALQACMDGFS-VVK---------LNEV------IRTVD 134 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~-Ga-~Viv~d~dp~r~~~A~~~G~~-v~~---------l~e~------l~~aD 134 (542)
...|.+|+|.|. |.+|..+++.++.+ |. .|+++. ++.+...+...|.. +++ ..+. -++.|
T Consensus 149 ~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d 227 (352)
T cd08247 149 LGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFD 227 (352)
T ss_pred cCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCce
Confidence 347999999999 48999999999987 55 566665 34333344455542 221 1111 14799
Q ss_pred EEEEcCCCcccCCHHHHhccC---CCeEEEecc
Q psy4626 135 IVVTATGNKNVVTREHMDKMK---NGCVVCNMG 164 (542)
Q Consensus 135 vVi~atG~~~lI~~e~l~~mk---~GailvnvG 164 (542)
+++++.|....+. +.++.++ +++.+++.+
T Consensus 228 ~vl~~~g~~~~~~-~~~~~l~~~~~~G~~v~~~ 259 (352)
T cd08247 228 LILDCVGGYDLFP-HINSILKPKSKNGHYVTIV 259 (352)
T ss_pred EEEECCCCHHHHH-HHHHHhCccCCCCEEEEEe
Confidence 9999988754553 6778888 999888764
No 493
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.81 E-value=0.13 Score=52.32 Aligned_cols=75 Identities=24% Similarity=0.285 Sum_probs=50.8
Q ss_pred HHHHHHhCC--CEEEEEeCCchhhhhhhcCCce--eeCHHHHhcCCcEEEEcCCCc---ccCCHHHHhccCCCeEEEecc
Q psy4626 92 CCQSLKGLG--CVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNK---NVVTREHMDKMKNGCVVCNMG 164 (542)
Q Consensus 92 vA~~l~~~G--a~Viv~d~dp~r~~~A~~~G~~--v~~l~e~l~~aDvVi~atG~~---~lI~~e~l~~mk~GailvnvG 164 (542)
+|++|+..| .+|+.+|+++.....|...|+- ..+..+.++++|+||.|+... .++ .+....+++|++++.+|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l-~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVL-EEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHH-HHHHCGS-TTSEEEE--
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHH-HHhhhhcCCCcEEEEeC
Confidence 477888888 6999999999988888777764 233356789999999998522 233 24445688999999999
Q ss_pred CCC
Q psy4626 165 HSN 167 (542)
Q Consensus 165 ~g~ 167 (542)
+-.
T Consensus 80 SvK 82 (258)
T PF02153_consen 80 SVK 82 (258)
T ss_dssp S-C
T ss_pred CCC
Confidence 865
No 494
>PLN02342 ornithine carbamoyltransferase
Probab=93.79 E-value=1.1 Score=47.81 Aligned_cols=124 Identities=16% Similarity=0.108 Sum_probs=78.5
Q ss_pred hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCc
Q psy4626 34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDP 110 (542)
Q Consensus 34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp 110 (542)
.....+||||..+.. -+. -|++.+ .+.+..+ .+.|.+|+++|-+ ++-...+..+..+|++|.++-+..
T Consensus 158 a~~~~vPVINA~~~~-~HP-------tQaLaDl~Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~ 228 (348)
T PLN02342 158 AEYSSVPVINGLTDY-NHP-------CQIMADALTIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKG 228 (348)
T ss_pred HHhCCCCEEECCCCC-CCh-------HHHHHHHHHHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcc
Confidence 345678999886542 121 122222 2333223 4789999999984 466777888889999999985433
Q ss_pred hhh-----hhhhcCC---ce-eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHhccCCCeEEEeccC
Q psy4626 111 ICA-----LQACMDG---FS-VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMDKMKNGCVVCNMGH 165 (542)
Q Consensus 111 ~r~-----~~A~~~G---~~-v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~~mk~GailvnvG~ 165 (542)
... ..+...| +. ..+++++++++|||...+ | ..-.++.+.++.+|+++++.-++-
T Consensus 229 ~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP 308 (348)
T PLN02342 229 YEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLP 308 (348)
T ss_pred cccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCC
Confidence 221 1122223 33 356789999999999863 2 124466777888888887776664
Q ss_pred C
Q psy4626 166 S 166 (542)
Q Consensus 166 g 166 (542)
.
T Consensus 309 ~ 309 (348)
T PLN02342 309 A 309 (348)
T ss_pred c
Confidence 3
No 495
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=93.79 E-value=1.1 Score=47.56 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=77.3
Q ss_pred hcccccceeecCchhhhHHHHhHHHHHHHHHH--HHHhhcCccccCcEEEEEcCC--hhHHHHHHHHHhCCCEEEEEeCC
Q psy4626 34 AGKLTVPAMNVNDSVTKTKFDNLYMCRESIID--SLKRSTDVMFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEID 109 (542)
Q Consensus 34 ~~~L~~PV~~vn~s~~K~~fd~~~g~~~s~~~--ai~r~~~~~l~GktVvViG~G--~IG~~vA~~l~~~Ga~Viv~d~d 109 (542)
.....+||||.-+. .-+. -|++.+ .+.+..+ .+.|.+|+++|-+ .+....+..+..+|++|.++-+.
T Consensus 119 a~~~~vPVINa~~~-~~HP-------tQaLaDl~Ti~e~~g-~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~ 189 (331)
T PRK02102 119 AKYSGVPVWNGLTD-EWHP-------TQMLADFMTMKEHFG-PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPK 189 (331)
T ss_pred HHhCCCCEEECCCC-CCCh-------HHHHHHHHHHHHHhC-CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCc
Confidence 33567899987663 1111 122222 2322222 4789999999996 67788888899999999998543
Q ss_pred chhhh---------hhhcCCce---eeCHHHHhcCCcEEEEcC----C------------CcccCCHHHHh-ccCCCeEE
Q psy4626 110 PICAL---------QACMDGFS---VVKLNEVIRTVDIVVTAT----G------------NKNVVTREHMD-KMKNGCVV 160 (542)
Q Consensus 110 p~r~~---------~A~~~G~~---v~~l~e~l~~aDvVi~at----G------------~~~lI~~e~l~-~mk~Gail 160 (542)
..... .+...|.. ..+++++++++|||.... | ..--++.+.++ ..++++++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~iv 269 (331)
T PRK02102 190 ELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIF 269 (331)
T ss_pred ccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEE
Confidence 22211 12234533 346789999999999853 1 12345667777 46888888
Q ss_pred EeccC
Q psy4626 161 CNMGH 165 (542)
Q Consensus 161 vnvG~ 165 (542)
.-++-
T Consensus 270 mH~lP 274 (331)
T PRK02102 270 MHCLP 274 (331)
T ss_pred ECCCC
Confidence 76554
No 496
>PRK07326 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.17 Score=49.27 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.1
Q ss_pred ccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626 75 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL 114 (542)
Q Consensus 75 l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~ 114 (542)
+.+++++|+|. |.||+.+++.|...|++|+++++++.+..
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~ 44 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE 44 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH
Confidence 45899999996 89999999999999999999999886543
No 497
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.66 E-value=0.057 Score=55.85 Aligned_cols=42 Identities=29% Similarity=0.548 Sum_probs=38.3
Q ss_pred eehhhhcccCcEEEEccCCCCccCHhHHhcCCCCcEEEccCCCCc
Q psy4626 302 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT 346 (542)
Q Consensus 302 ~~~~~a~~~~d~~~t~tg~~~vi~~~~~~~mk~gail~n~gh~~~ 346 (542)
..+.+..++|||+|+++|.+++|+.+++ |+||+++++|.-.+
T Consensus 193 ~~l~~~~~~ADIvI~AvG~p~~i~~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 193 KNLAELTKQADILIVAVGKPKLITADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCHHHc---CCCCEEEEeecccc
Confidence 3578999999999999999999999998 89999999997764
No 498
>PRK08223 hypothetical protein; Validated
Probab=93.63 E-value=0.13 Score=53.43 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=33.8
Q ss_pred cccCcEEEEEcCChhHHHHHHHHHhCCC-EEEEEeCCc
Q psy4626 74 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP 110 (542)
Q Consensus 74 ~l~GktVvViG~G~IG~~vA~~l~~~Ga-~Viv~d~dp 110 (542)
.+..++|+|+|+|-+|..++..|...|. ++.++|.|.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4678899999999999999999999999 899998775
No 499
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=93.57 E-value=0.41 Score=48.38 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=50.2
Q ss_pred ccCcEEEEEcCC-hhHHHHHHHHHhCCCEEEEEeCCchhhhh-hhcCC---ce-----eeCHHH----------HhcCCc
Q psy4626 75 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDG---FS-----VVKLNE----------VIRTVD 134 (542)
Q Consensus 75 l~GktVvViG~G-~IG~~vA~~l~~~Ga~Viv~d~dp~r~~~-A~~~G---~~-----v~~l~e----------~l~~aD 134 (542)
+.+|.++|.|+. -||..+|+.|...|++|+...++..|+.. +.+.+ +. +.+.++ .+...|
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD 83 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID 83 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence 568999999996 59999999999999999999998887653 33444 11 223221 236799
Q ss_pred EEEEcCC
Q psy4626 135 IVVTATG 141 (542)
Q Consensus 135 vVi~atG 141 (542)
++|+..|
T Consensus 84 iLvNNAG 90 (246)
T COG4221 84 ILVNNAG 90 (246)
T ss_pred EEEecCC
Confidence 9999765
No 500
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.55 E-value=0.23 Score=50.90 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=36.3
Q ss_pred cccCcEEEEEcC-ChhHHHHHHHHHhCCCEEEEEeCCchhhh
Q psy4626 74 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL 114 (542)
Q Consensus 74 ~l~GktVvViG~-G~IG~~vA~~l~~~Ga~Viv~d~dp~r~~ 114 (542)
.+.|++++|.|. |.||+.+|+.+...|++|+++++++.++.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~ 47 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELA 47 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 467999999997 78999999999999999999998876543
Done!