RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4626
(542 letters)
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 473 bits (1220), Expect = e-165
Identities = 219/268 (81%), Positives = 245/268 (91%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + + AGKL VPAMNVNDSVTK KFDNLY CRESI+D LKR+TD+MFGGKQVV+C
Sbjct: 167 GVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVC 226
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKLNEVIR VDIV+T TGNK
Sbjct: 227 GYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNK 286
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
NVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VRSQVDHVIWPDGKRIVLL
Sbjct: 287 NVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPDGKRIVLL 346
Query: 204 AEGRLVNLSCSSLPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHL 263
AEGRL+NLSCS++P+FV+SITA TQALALIEL+NAP GRYK DVYLLPKKMDEYVASLHL
Sbjct: 347 AEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHL 406
Query: 264 PTFDAHLTELSDEQAKYMGLNKAGPFKP 291
PTFDAHLTEL+DEQAKY+GLNK GPFKP
Sbjct: 407 PTFDAHLTELTDEQAKYLGLNKNGPFKP 434
Score = 205 bits (524), Expect = 1e-60
Identities = 88/107 (82%), Positives = 96/107 (89%), Gaps = 2/107 (1%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNS--WQPNMILDDGGDATHWMLKKYPTMFKAIKGIV 494
+G PVFAW+GE+E+DFWWCID+CVN WQPNMILDDGGD THW+ KKYP MFK IKGIV
Sbjct: 102 SGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIV 161
Query: 495 EESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
EES+TGVHRLYQLSKAGKL VPAMNVNDSVTK KFDNLY CRESI+D
Sbjct: 162 EESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILD 208
Score = 202 bits (516), Expect = 2e-59
Identities = 93/112 (83%), Positives = 105/112 (93%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
MDGF +VKLNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLR
Sbjct: 260 CMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR 319
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQ 406
TP+LTWE+VRSQVDHVIWPDGKRIVLLAEGRL+NLSCS++P+FV+SITA TQ
Sbjct: 320 TPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQ 371
Score = 66.5 bits (163), Expect = 6e-12
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MP +MALRKRA +KPL A+IVGCTHI AQTA
Sbjct: 36 MPALMALRKRAQGEKPLAGAKIVGCTHITAQTA 68
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 461 bits (1187), Expect = e-159
Identities = 146/272 (53%), Positives = 189/272 (69%), Gaps = 4/272 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + G L PA+NVNDSVTK+KFDN Y C+ES++D ++R TDVM GK V+C
Sbjct: 194 GVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVC 253
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKG QSL G G + +TE+DPICALQA MDGF VV L++ T DIVVT TGNK
Sbjct: 254 GYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTTGNK 313
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+V+T +HM KMK+ C+V N+GH + EI V +LR +L W V+ QVD + +PDGKR++LL
Sbjct: 314 DVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR--NLKWTNVKPQVDLIEFPDGKRLILL 371
Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
+EGRL+NL ++ PSFV+S + Q L IELF YK++VY+LPK +DE VA LH
Sbjct: 372 SEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRT-DAYKNEVYVLPKHLDEKVARLH 430
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L A LT LS+EQA Y+G+ GPFK +Y
Sbjct: 431 LDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHY 462
Score = 187 bits (476), Expect = 2e-53
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
+MDGF VV L++ T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR
Sbjct: 287 AMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR 346
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
+L W V+ QVD + +PDGKR++LL+EGRL+NL ++ PSFV+S + Q
Sbjct: 347 --NLKWTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQ 397
Score = 178 bits (453), Expect = 3e-50
Identities = 60/143 (41%), Positives = 76/143 (53%), Gaps = 38/143 (26%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWMLK------------ 481
TG PVFA +GET E++W D+ + NMILDDGGDAT ++L
Sbjct: 93 TGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNMILDDGGDATMYILIGARAEAGEDVLS 152
Query: 482 -----------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAM 518
+ AIKG+ EE+ TGV+RLYQL K G L PA+
Sbjct: 153 NPQSEEEEVLFAQIKKRMAATPGFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAI 212
Query: 519 NVNDSVTKTKFDNLYMCRESIID 541
NVNDSVTK+KFDN Y C+ES++D
Sbjct: 213 NVNDSVTKSKFDNKYGCKESLVD 235
Score = 61.2 bits (149), Expect = 3e-10
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAA 34
MPG+MA R+ G +PLK ARI G H+ QTA
Sbjct: 27 MPGLMAAREEFGKSQPLKGARISGSLHMTIQTAV 60
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 459 bits (1182), Expect = e-159
Identities = 140/277 (50%), Positives = 192/277 (69%), Gaps = 6/277 (2%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ + GKLT+PAMNVNDSVTK+KFDNLY CRES++D +KR+TDVM GK +C
Sbjct: 158 GVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVC 217
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +L+G G + +TE+DPI ALQA M+G+ V+ + +V+ I VT TGN
Sbjct: 218 GYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGND 277
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+++T EH +M++ +VCN+GH +TEI V L+ +V+ QVD +G+ I+LL
Sbjct: 278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTMANGRHIILL 337
Query: 204 AEGRLVNLSCSSL-PSFVVSITACTQALALIELF-NAPSGRY----KSDVYLLPKKMDEY 257
AEGRLVNL C+S PSFV+S + C Q LA IEL+ N +G+Y K+ VY LPKK+DE
Sbjct: 338 AEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEK 397
Query: 258 VASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
VA+LHL A LT+L+ +QA+Y+ GPFKP +Y
Sbjct: 398 VAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHY 434
Score = 201 bits (513), Expect = 5e-59
Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 4/109 (3%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVNS----WQPNMILDDGGDATHWMLKKYPTMFKAIKG 492
G+PVFAW+GETEE++ WC+ + + PNM+LDDGGD T+++L + + I G
Sbjct: 91 RGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYG 150
Query: 493 IVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
+ EE+ TGV LY+ + GKLT+PAMNVNDSVTK+KFDNLY CRES++D
Sbjct: 151 VSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVD 199
Score = 194 bits (495), Expect = 2e-56
Identities = 49/113 (43%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
+M+G+ V+ + +V+ I VT TGN +++T EH +M++ +VCN+GH +TEI V L+
Sbjct: 251 AMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLK 310
Query: 355 TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSL-PSFVVSITACTQ 406
+V+ QVD +G+ I+LLAEGRLVNL C+S PSFV+S + C Q
Sbjct: 311 ANAKERVEVKPQVDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQ 363
Score = 65.7 bits (161), Expect = 1e-11
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M LR+ G KPLK A+I GC H+ QTA
Sbjct: 25 MPGLMELRREYGPSKPLKGAKIAGCLHMTMQTA 57
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 449 bits (1157), Expect = e-154
Identities = 152/272 (55%), Positives = 196/272 (72%), Gaps = 4/272 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + G+L PA NVNDSVTK+KFDNLY CRES++D +KR+TDVM GK V+
Sbjct: 224 GVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVA 283
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC QSL+GLG +++TEIDPICALQA M+G+ VV + DI VTATGN
Sbjct: 284 GYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNY 343
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLL 203
+V+ +HM M++ +VCN+GH ++EIDV S R WE ++ QVDH+I+PDGKR++LL
Sbjct: 344 HVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENIKPQVDHIIFPDGKRVILL 401
Query: 204 AEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLH 262
AEGRLVNL C++ PSFV+S + Q LA IELF G Y + VY+LPK +DE VA LH
Sbjct: 402 AEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRG-GEYANKVYVLPKHLDEKVARLH 460
Query: 263 LPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
L A L+ELSD+QA Y+G++KAGPFKP +Y
Sbjct: 461 LARIGAQLSELSDDQAAYIGVSKAGPFKPDHY 492
Score = 186 bits (475), Expect = 4e-53
Identities = 57/120 (47%), Positives = 80/120 (66%), Gaps = 3/120 (2%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P +M+G+ VV + DI VTATGN +V+ +HM M++ +VCN+GH ++E
Sbjct: 310 PICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSE 369
Query: 348 IDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
IDV S R WE ++ QVDH+I+PDGKR++LLAEGRLVNL C++ PSFV+S + Q
Sbjct: 370 IDVASTR--QYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQ 427
Score = 181 bits (461), Expect = 4e-51
Identities = 58/143 (40%), Positives = 74/143 (51%), Gaps = 38/143 (26%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWMLK------------ 481
G PVFA++GE+ +++W + N NMILDDGGDAT ++
Sbjct: 123 AGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIA 182
Query: 482 -----------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAM 518
Y IKG+ EE+ TGVHRLYQ+ K G+L PA
Sbjct: 183 RPTNEEEVALFKSIERHLEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAF 242
Query: 519 NVNDSVTKTKFDNLYMCRESIID 541
NVNDSVTK+KFDNLY CRES++D
Sbjct: 243 NVNDSVTKSKFDNLYGCRESLVD 265
Score = 61.7 bits (150), Expect = 2e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
MPG++ +R +PLK ARI G H+ QT T+ A+
Sbjct: 57 MPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKAL 98
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 448 bits (1155), Expect = e-154
Identities = 134/274 (48%), Positives = 187/274 (68%), Gaps = 3/274 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + +L A+NVND+VTK K+DN+Y CR S+ D L R+TD + GK VV+C
Sbjct: 204 GVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVIC 263
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC S+KGLG +YITEIDPICA+QA M+GF+VV L+E++ D +T TGN
Sbjct: 264 GYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNV 323
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR-TPDLTWEKVRSQVDHVIWPDGKRIVL 202
+V+ EH+ KMKN VV N+GH + EI VN L + E V+ QVD + P+G +I++
Sbjct: 324 DVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNGNKIIV 383
Query: 203 LAEGRLVNLSCSS-LPSFVVSITACTQALALIELF-NAPSGRYKSDVYLLPKKMDEYVAS 260
LA GRL+NL C++ P+FV+S + C Q A ++L+ N + +Y++ VYLLPK +DE VA
Sbjct: 384 LARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVAL 443
Query: 261 LHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
HL +A LTEL D Q +++G+NK+GPFK + Y
Sbjct: 444 YHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEY 477
Score = 190 bits (483), Expect = 2e-54
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 288 PFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 347
P M+GF+VV L+E++ D +T TGN +V+ EH+ KMKN VV N+GH + E
Sbjct: 290 PICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDE 349
Query: 348 IDVNSLR-TPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSS-LPSFVVSITACT 405
I VN L + E V+ QVD + P+G +I++LA GRL+NL C++ P+FV+S + C
Sbjct: 350 IQVNELFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCN 409
Query: 406 Q 406
Q
Sbjct: 410 Q 410
Score = 173 bits (439), Expect = 4e-48
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 46/151 (30%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVN-----SWQPNMILDDGGDATHWMLK---------- 481
+ VFAW+ ET E++WWC++ + P+MI+DDGGDAT + K
Sbjct: 95 ENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEE 154
Query: 482 -------------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKA 510
K+ + K I G+ EE+ TGV RL ++ K
Sbjct: 155 KNILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQ 214
Query: 511 GKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
+L A+NVND+VTK K+DN+Y CR S+ D
Sbjct: 215 NELLFTAINVNDAVTKQKYDNVYGCRHSLPD 245
Score = 61.0 bits (148), Expect = 4e-10
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
MPG+M +R+ G D+PLKNA+I GC H+ + A T+ +
Sbjct: 28 MPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKL 69
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 443 bits (1142), Expect = e-152
Identities = 131/273 (47%), Positives = 184/273 (67%), Gaps = 3/273 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + AAG L PA+NVNDSVTK+KFDN Y R S+ID + R TD + GGK+V++C
Sbjct: 221 GVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLIC 280
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +++KG G + +TEIDPI ALQA M+GF VV + E I DIVVTATGNK
Sbjct: 281 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNK 340
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-GKRIVL 202
+++ EH+ MK+ ++ N+GH + EID+ L T V+ QVD + D G+ I++
Sbjct: 341 DIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIV 400
Query: 203 LAEGRLVNLSCSS-LPSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASL 261
L+EGRL+NL ++ PSFV+S + Q +A IEL+ Y ++VY LPK +DE VA +
Sbjct: 401 LSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKN-DEYDNEVYRLPKHLDEKVARI 459
Query: 262 HLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
H+ HLT+L+ EQA+Y+G++ GP+KP +Y
Sbjct: 460 HVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHY 492
Score = 185 bits (472), Expect = 1e-52
Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
M+GF VV + E I DIVVTATGNK+++ EH+ MK+ ++ N+GH + EID+ L
Sbjct: 314 MMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLE 373
Query: 355 TPDLTWEKVRSQVDHVIWPD-GKRIVLLAEGRLVNLSCSS-LPSFVVSITACTQ 406
T V+ QVD + D G+ I++L+EGRL+NL ++ PSFV+S + Q
Sbjct: 374 RSGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQ 427
Score = 175 bits (446), Expect = 5e-49
Identities = 58/146 (39%), Positives = 78/146 (53%), Gaps = 41/146 (28%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCVN----SWQPNMILDDGGDATHWMLK----------- 481
G+PVFAW+GET E++WW ++ + NMILDDGGDAT +L+
Sbjct: 117 KGVPVFAWKGETLEEYWWAAEQMLTWPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVP 176
Query: 482 --------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGKLTV 515
K+ + +++KG+ EE+ TGV RLYQ + AG L
Sbjct: 177 PAEEDDPAEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAF 236
Query: 516 PAMNVNDSVTKTKFDNLYMCRESIID 541
PA+NVNDSVTK+KFDN Y R S+ID
Sbjct: 237 PAINVNDSVTKSKFDNKYGTRHSLID 262
Score = 62.1 bits (151), Expect = 2e-10
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
MPG+M+LR+ + +PLK ARI G H+ QTA T+ A+
Sbjct: 42 MPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTAL 83
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 436 bits (1122), Expect = e-149
Identities = 136/275 (49%), Positives = 185/275 (67%), Gaps = 4/275 (1%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + A G L PA+NVNDSVTK+KFDNLY CR S+ D L R+TDVM GK V+
Sbjct: 212 GVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVA 271
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
GYG+VGKGC +LK G + +TEIDPICALQA M+G V+ L +V+ DI VT TGNK
Sbjct: 272 GYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNK 331
Query: 144 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKR-IV 201
+++ +HM KMKN +VCN+GH + EID+ L T P + ++ Q D ++P+ I+
Sbjct: 332 DIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGII 391
Query: 202 LLAEGRLVNLSCSS-LPSFVVSITACTQALALIELFN-APSGRYKSDVYLLPKKMDEYVA 259
+LAEGRL+NL C++ PSFV+S + Q +A +EL+N SG+Y+ VY+LPK +DE VA
Sbjct: 392 ILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVA 451
Query: 260 SLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY 294
+LHL A LT+LS +QA Y+ + GP+KP +Y
Sbjct: 452 ALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHY 486
Score = 187 bits (476), Expect = 3e-53
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 281 MGLNKAGPFKPSYYSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCN 340
+ + + P +M+G V+ L +V+ DI VT TGNK+++ +HM KMKN +VCN
Sbjct: 291 VIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCN 350
Query: 341 MGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDGKR-IVLLAEGRLVNLSCSS-LPSF 397
+GH + EID+ L T P + ++ Q D ++P+ I++LAEGRL+NL C++ PSF
Sbjct: 351 IGHFDNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSF 410
Query: 398 VVSITACTQ 406
V+S + Q
Sbjct: 411 VMSCSFTNQ 419
Score = 176 bits (448), Expect = 3e-49
Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 44/149 (29%)
Query: 437 TGLPVFAWRGETEEDFWWCIDKCV---NSWQPNMILDDGGDATHWMLK------------ 481
VFAW+GET +++WWC ++ + P++I+DDGGD T + +
Sbjct: 105 DSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSG 164
Query: 482 -----------------------------KYPTMFKAIKGIVEESLTGVHRLYQLSKAGK 512
+Y M + G+ EE+ TGV RLYQ+ G
Sbjct: 165 QFPDPDSTDNAEFKIVLSIIKEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGT 224
Query: 513 LTVPAMNVNDSVTKTKFDNLYMCRESIID 541
L PA+NVNDSVTK+KFDNLY CR S+ D
Sbjct: 225 LLFPAINVNDSVTKSKFDNLYGCRHSLPD 253
Score = 64.4 bits (157), Expect = 3e-11
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTAAGKLTVPAM 42
MPG+MA R G +P K A+I G H+ QTA T+ A+
Sbjct: 39 MPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTAL 80
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 89.2 bits (221), Expect = 7e-20
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 7/141 (4%)
Query: 27 HINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYG 86
++N T+ + D + N E I + TD G V + G G
Sbjct: 108 YLNQCMKKTNRTLVKLMERDDIA---IYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLG 164
Query: 87 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNK 143
VG + LG + + + + G K + +R VD+ + T
Sbjct: 165 RVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCIN-TIPA 223
Query: 144 NVVTREHMDKMKNGCVVCNMG 164
VVT + +M + V ++
Sbjct: 224 LVVTANVLAEMPSHTFVIDLA 244
Score = 40.3 bits (94), Expect = 0.001
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 296 MDGFSVV---KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG 342
G K + +R VD+ + T VVT + +M + V ++
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCIN-TIPALVVTANVLAEMPSHTFVIDLA 244
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 2e-08
Identities = 97/603 (16%), Positives = 170/603 (28%), Gaps = 199/603 (33%)
Query: 11 AGDDKPLKN----ARIVG-CTHINAQTAAGKLTVPAMNVNDSVTKT---KFDNLYMCRE- 61
A DD+P + +G + + + G+ D V +F+N Y+
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEPSKVGQF--------DQVLNLCLTEFENCYLEGND 100
Query: 62 --SIIDSLKRSTDVMFGGKQVVLCGY-------GEVGKGCCQS--LK------------- 97
++ L + D + ++ Y S +
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 98 -GLGCVI-YITEIDPICALQACMDGFSVVKLNEVIRTV--DIVVTATGNKNVVTREHMDK 153
G G Y E L+ L + + D++ + + + R +D
Sbjct: 161 GGQGNTDDYFEE------LR---------DLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 154 MKNGCVVCNMGHSNTEIDVNS-LRTPDLTWEKVRSQVDHVI-----WPDGKRIVLL---- 203
K V G +++ L P T D+++ P I ++
Sbjct: 206 EK----VFTQG-----LNILEWLENPSNT-----PDKDYLLSIPISCP---LIGVIQLAH 248
Query: 204 --AEGRLVNLSCSSLPSFVVSITACTQAL---ALIELFNAPSGRYKSDVYLLPKKMDEYV 258
+L+ + L S++ T +Q L I S ++ +K +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE--TDSW---ESFFVSVRKAITVL 303
Query: 259 ------ASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSV--VKLNEVIRT 310
P + L D N G PS M S+ + +V
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLE-----NNEGV--PSP--M--LSISNLTQEQVQDY 352
Query: 311 VDIVVTATGNKNVVTREHMD-KMKNG---CVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 366
V+ N ++ + ++ + NG VV G SL +LT K ++
Sbjct: 353 VNKT-----NSHLPAGKQVEISLVNGAKNLVVS--GP------PQSLYGLNLTLRKAKA- 398
Query: 367 VDHVIWPDGK---RIVLLAEGRLVNLSCSSLPSFV-------VSITACTQRD-------- 408
P G RI R + S LP V + +D
Sbjct: 399 ------PSGLDQSRIPF--SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 409 -KSSL-IPCYHLRFASNLAKY---LLNSLTSSYTGLPVFAWRGETEEDFWWCIDKCVNSW 463
+ IP Y S+L + + LPV W +
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-W------------ETTTQF- 496
Query: 464 QPNMILDDGGDATHWMLKKYPTMFKAIKGIVEESL--TGVHRLYQLSKAGKLTVPAMNVN 521
+ ILD G P + + + TGV R+ AG L + N +
Sbjct: 497 KATHILDFG-----------PGGASGLGVLTHRNKDGTGV-RVIV---AGTLDI---NPD 538
Query: 522 DSV 524
D
Sbjct: 539 DDY 541
Score = 40.4 bits (94), Expect = 0.002
Identities = 37/265 (13%), Positives = 74/265 (27%), Gaps = 80/265 (30%)
Query: 4 IMALRKRAGDDKP--LKNAR-------IVGCTHINAQTAAGKLTVPAMNVNDSVTKTKFD 54
+ A+ D + R +G A ++P + DS+ +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGV---RCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 55 NLYM--CR-------ESIID----SLKRSTDVMF----GGKQVVLCGYGEVGKGCCQSLK 97
M + ++ L V G K +V+ G + G +L+
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 98 GLGC---------------VIYITEIDPICA------LQACMDGFS--VVKLNEVIRTVD 134
+ + P+ + L D + +VK N D
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 135 IVV----TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK-VRSQV 189
I + T G ++ R +G + + + V WE + +
Sbjct: 455 IQIPVYDTFDG-SDL--RVL-----SGSISERIVDCIIRLPVK--------WETTTQFKA 498
Query: 190 DHVI--WPDG-KRIVLL----AEGR 207
H++ P G + +L +G
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGT 523
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 51.7 bits (124), Expect = 2e-07
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 114
N E I + TD G QV + G G G ++ LG + +
Sbjct: 135 NSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLA 194
Query: 115 QACMDGFSVVKLN---EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVV 160
+ G + E ++ +DI + + ++ + + M ++
Sbjct: 195 RITEMGLVPFHTDELKEHVKDIDICINTIPSM-ILNQTVLSSMTPKTLI 242
Score = 30.9 bits (70), Expect = 0.87
Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 299 FSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVV 338
F +L E ++ +DI + + ++ + + M ++
Sbjct: 204 FHTDELKEHVKDIDICINTIPSM-ILNQTVLSSMTPKTLI 242
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 64/504 (12%), Positives = 145/504 (28%), Gaps = 157/504 (31%)
Query: 43 NVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGC-----CQSLK 97
N N K + R L+++ + K V++ G GK C S K
Sbjct: 121 NDNQVFAK-----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 98 GLGC----VIYIT-------------------EIDPICALQACMDGFSVVKL--NEVIRT 132
+ ++ +IDP + D S +KL + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAE 233
Query: 133 VDIVVTATGNK-------NVVTREHMDKMKNGC--VVCNMGHSNTEIDVNSLRTPDLTWE 183
+ ++ + + NV + + C ++ T+ +++ T ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLD 292
Query: 184 KVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQALALI--ELFNAPS- 240
+ + K LL + ++ LP V++ + L++I + + +
Sbjct: 293 HHSMTLTP---DEVKS--LLL--KYLDCRPQDLPREVLTTNP--RRLSIIAESIRDGLAT 343
Query: 241 -GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGF 299
+K ++ K+ ++ L L + ++ +
Sbjct: 344 WDNWK---HVNCDKLTT--------IIESSLNVLEPAE-----------YRKMFDR---L 378
Query: 300 SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 359
SV + I T+ + + ++K+ +V +++ P +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV--EKQPKE----STISIPSIY 432
Query: 360 WEKVRSQVD-----HVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIP 414
E ++ +++ H + IV ++P D LIP
Sbjct: 433 LE-LKVKLENEYALH------RSIV----------DHYNIPK---------TFDSDDLIP 466
Query: 415 C-----------YHLRFASNLAKYLLNSLTSSYTGLPVFAWRGETEEDFWWCIDK----C 459
+HL+ + + L + DF + K
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTL--FRMVFL-------------DFRFLEQKIRHDS 511
Query: 460 VNSWQPNMILDDGGDATHWMLKKY 483
IL+ LK Y
Sbjct: 512 TAWNASGSILNTLQQ-----LKFY 530
Score = 31.0 bits (69), Expect = 1.5
Identities = 29/222 (13%), Positives = 57/222 (25%), Gaps = 63/222 (28%)
Query: 328 HMDKMKNGCVVCNMGHSNTEI----------DVNSLRTPDLTWEKVRS-QVDHVI-WPDG 375
HMD + +I + + D+ + ++DH+I D
Sbjct: 6 HMDFETG-----EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 376 KRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSLTSS 435
L L++ + FV + L Y K+L++ + +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFV----------EEVLRINY---------KFLMSPIKTE 101
Query: 436 YTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKY----PTMFKAIK 491
+ D+ N Q KY + ++
Sbjct: 102 QRQ------PSMMTRMYIEQRDRLYNDNQV--------------FAKYNVSRLQPYLKLR 141
Query: 492 GIVEE--SLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDN 531
+ E V + + +GK V + K D
Sbjct: 142 QALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 44.6 bits (106), Expect = 5e-05
Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYI----TEIDPICALQACMDGFSVVKLNEVIR 131
G+Q+++ G G++G+ LG VI + D + + + +
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH------FHETVAFTATADALA 190
Query: 132 TVDIVVTA------TGNKNVVTREHMDKMKNGCVVCNMG 164
T + +V A T ++ + E + K ++ N+G
Sbjct: 191 TANFIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227
Score = 31.9 bits (73), Expect = 0.53
Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 290 KPSYYSMDGFSVVKLNEVIRTVDIVVTA------TGNKNVVTREHMDKMKNGCVVCNMG 342
P+ + + + + + T + +V A T ++ + E + K ++ N+G
Sbjct: 171 HPADHFHETVAFTATADALATANFIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 41.7 bits (99), Expect = 1e-04
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--EIDPICALQACMDGFSVV--KLNEVIRT 132
G +++L G G + + + ID + A + V+ ++ +I+
Sbjct: 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKN 80
Query: 133 VDIVVTATGNKN-VVTREHMDKMK 155
D+++TAT +K +V + K
Sbjct: 81 NDVIITATSSKTPIVEERSLMPGK 104
Score = 29.0 bits (66), Expect = 2.2
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 303 KLNEVIRTVDIVVTATGNKN-VVTREHMDKMK 333
++ +I+ D+++TAT +K +V + K
Sbjct: 73 DIDSLIKNNDVIITATSSKTPIVEERSLMPGK 104
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 43.0 bits (102), Expect = 2e-04
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 66 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV 124
L + + + G G VG L+ LG + DP A D
Sbjct: 108 MLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL---CDPP--RAARGDEGDFR 162
Query: 125 KLNEVIRTVDIV-----VTATGN---KNVVTREHMDKMKNGCVVCN 162
L+E+++ D++ + G ++ + ++K G ++ N
Sbjct: 163 TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 42.2 bits (100), Expect = 3e-04
Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 23/150 (15%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---ALQACMDGFSVV-----KLNE 128
G V++ G G +G + K G + T P A D VV + +
Sbjct: 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESS 228
Query: 129 VIRT--------VDIVVTATGNKNVVTREHMDKMKNGCVVCN--MGHSNTEIDVNSLRTP 178
+I ++ + +GN+ + ++ + G + MG + + +
Sbjct: 229 IIERIRSAIGDLPNVTIDCSGNEKCI-TIGINITRTGGTLMLVGMGSQMVTVPLVNACAR 287
Query: 179 DLTWEKVRSQVDHVIWPDGKRIVLLAEGRL 208
++ + V + +P + ++A GR
Sbjct: 288 EIDIKSVFRYCN--DYPIA--LEMVASGRC 313
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 7e-04
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 488 KAIKGIVEESLTGVHRLYQLSKAGKLTVPAMNVNDSV 524
+A+K + + SL +LY A PA+ + ++
Sbjct: 20 QALKKL-QASL----KLYADDSA-----PALAIKATM 46
Score = 31.8 bits (71), Expect = 0.27
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 94 QSLKGL-GCV-IYITEIDPICALQACMD 119
Q+LK L + +Y + P A++A M+
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 38.8 bits (91), Expect = 9e-04
Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 32/151 (21%)
Query: 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--------ICALQACMDGFSVVKLNEV 129
KQ + G G G + L +G + +I+ + +L +
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 66
Query: 130 -IRTVDIVVTATGNK---NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 185
IR + V+ A G + +T + ++ + + + KV
Sbjct: 67 GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWV--------------KAQNYYHHKV 112
Query: 186 RSQ--VDHVIWPD---GKRIV-LLAEGRLVN 210
+ D +I P+ G +I L++ ++N
Sbjct: 113 LEKIGADRIIHPEKDMGVKIAQSLSDENVLN 143
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 39.7 bits (93), Expect = 0.001
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN----EV---- 129
+ VV+CG+ E C + L+G + D + G + V +
Sbjct: 10 RHVVICGWSESTLECLRELRGSEVF--VLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 67
Query: 130 -IRTVDIVVTATGN 142
+R V+ +
Sbjct: 68 NVRGARAVIVDLES 81
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 39.7 bits (92), Expect = 0.002
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 76 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 134
G K V + G G++G + + + EI P + G + + I D
Sbjct: 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEAD 69
Query: 135 IVVTATGNKNV--VTREHMDKMKNGCVVCNMG 164
+VV A + + V + + +++ G +V +
Sbjct: 70 VVVLALPDNIIEKVAEDIVPRVRPGTIVLILD 101
Score = 28.5 bits (63), Expect = 4.8
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 297 DGFSVVKLNEVIRTVDIVVTATGNKNV--VTREHMDKMKNGCVVCNMG 342
G + + I D+VV A + + V + + +++ G +V +
Sbjct: 54 MGIPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILD 101
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/140 (9%), Positives = 37/140 (26%), Gaps = 30/140 (21%)
Query: 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV 129
+ ++ G G G + L G + + +GF V +
Sbjct: 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSL 66
Query: 130 -IRTVDIVVTATGN--KNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV- 185
+ V V+ + N+ + + + + + R ++
Sbjct: 67 DLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV--------------RVSSPKKKEEF 112
Query: 186 -RSQVDHVIWPD---GKRIV 201
+ + V+ + +
Sbjct: 113 EEAGANLVVLVADAVKQAFM 132
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/149 (14%), Positives = 50/149 (33%), Gaps = 21/149 (14%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV---------KL 126
++V++ G G +G + G V +P Q ++ KL
Sbjct: 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKL 240
Query: 127 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG-HSNTEIDVNSLRTPDLTWEK- 184
+ + D+++ ATG + + + V+ G ++ + ++ ++
Sbjct: 241 KDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNK 300
Query: 185 -----VRSQVDHVIWPDGKRIVLLAEGRL 208
V Q H + +V LA +
Sbjct: 301 TIIGLVNGQKPH--FQQA--VVHLASWKT 325
Score = 28.5 bits (64), Expect = 5.9
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 294 YSMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG-HSNTEIDVNS 352
Y KL + + D+++ ATG + + + V+ G ++ + ++
Sbjct: 230 YYNSSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDY 289
Query: 353 LRTPDLTWEK------VRSQVDHVIWPDGKRIVLLAEGRL 386
++ V Q H + +V LA +
Sbjct: 290 KTLQEIVHTNKTIIGLVNGQKPH--FQQA--VVHLASWKT 325
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 38.2 bits (89), Expect = 0.002
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 76 GGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLN------- 127
G QV++ G G +G G L+ G + EI A Q +G +V+ +
Sbjct: 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFW 97
Query: 128 ---EVIRTVDIVVTATGN 142
V +V+ A +
Sbjct: 98 ERILDTGHVKLVLLAMPH 115
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 39.2 bits (92), Expect = 0.002
Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT----EIDPICALQACMDGFSVVKLNEVIR 131
G+ +++ G G +G+ + K G V+ ++ E + LN+++
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF----DQVYQLP--ALNKMLA 193
Query: 132 TVDIVV------TATGNKNVVTREHMDKMKNGCVVCNMG 164
D++V T ++ T + K G ++ N+G
Sbjct: 194 QADVIVSVLPATRET--HHLFTASRFEHCKPGAILFNVG 230
Score = 28.8 bits (65), Expect = 4.0
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 295 SMDGFSVV----KLNEVIRTVDIVV------TATGNKNVVTREHMDKMKNGCVVCNMG 342
GF V LN+++ D++V T ++ T + K G ++ N+G
Sbjct: 175 ERAGFDQVYQLPALNKMLAQADVIVSVLPATRET--HHLFTASRFEHCKPGAILFNVG 230
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 39.2 bits (92), Expect = 0.003
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 66 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSV 123
++ + + G G+VG + L+GLG ++ DP QA
Sbjct: 105 AMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC----DPP--RQAREPDGEF 158
Query: 124 VKLNEVIRTVDIV-----VTATGN---KNVVTREHMDKMKNGCVVCN 162
V L ++ D++ + G ++++ + ++ G + N
Sbjct: 159 VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 38.8 bits (91), Expect = 0.003
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135
+ + G G +G G V+ D + G L+E+++ D+
Sbjct: 141 RLTLGVIGTGRIGSRVAMYGLAFGMKVLCY---DVVKREDLKEKGCVYTSLDELLKESDV 197
Query: 136 V---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 164
+ V T +++ E + MK+G + N
Sbjct: 198 ISLHVPYTKETHHMINEERISLMKDGVYLINTA 230
Score = 29.5 bits (67), Expect = 3.0
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 298 GFSVVKLNEVIRTVDIV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 342
G L+E+++ D++ V T +++ E + MK+G + N
Sbjct: 182 GCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTA 230
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 38.7 bits (91), Expect = 0.003
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 10/94 (10%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VI-YITEIDPICALQACMDGFSVVKLNEVIRTVD 134
+ V + G G +G+ Q ++G G VI Y D + G+ V L+++ + D
Sbjct: 146 DQVVGVVGTGHIGQVFMQIMEGFGAKVITY----DIFRNPELEKKGYYVDSLDDLYKQAD 201
Query: 135 IV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 164
++ V N +++ E + KMK V+ N+
Sbjct: 202 VISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 235
Score = 29.9 bits (68), Expect = 2.3
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 298 GFSVVKLNEVIRTVDIV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 342
G+ V L+++ + D++ V N +++ E + KMK V+ N+
Sbjct: 187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVS 235
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 37.6 bits (88), Expect = 0.007
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VI-YITEIDPICALQACMDGFSVVKLNEVIRTVD 134
V + G G +G+ Q G+G VI D + D + V L+EV+ D
Sbjct: 146 NCTVGVVGLGRIGRVAAQIFHGMGATVIGE----DVFEI-KGIEDYCTQVSLDEVLEKSD 200
Query: 135 IV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 164
I+ N VVTR+ + KMK+G ++ N
Sbjct: 201 IITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234
Score = 28.7 bits (65), Expect = 4.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 297 DGFSVVKLNEVIRTVDIV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 342
D + V L+EV+ DI+ N VVTR+ + KMK+G ++ N
Sbjct: 185 DYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCA 234
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 37.6 bits (88), Expect = 0.007
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VI-YITEIDPICALQACMDGFSVVKLNEVIRTVD 134
+ V + G G +G+ + KG G VI Y DP + F V L ++ + D
Sbjct: 145 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAY----DPYPM-KGDHPDFDYVSLEDLFKQSD 199
Query: 135 IV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 164
++ V N +++ + MK G +V N
Sbjct: 200 VIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233
Score = 29.1 bits (66), Expect = 3.6
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 297 DGFSVVKLNEVIRTVDIV---VTAT-GNKNVVTREHMDKMKNGCVVCNMG 342
F V L ++ + D++ V N +++ + MK G +V N
Sbjct: 184 PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 37.6 bits (88), Expect = 0.009
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT--EIDPICALQACMDGFSVV--KLNEV 129
K V++ G GE+GK +SL G + + + L + G +V +L +
Sbjct: 165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDH 224
Query: 130 IRTVDIVVTATGNKN-VVTREHM 151
+ D+VV+AT + V+ + +
Sbjct: 225 LARSDVVVSATAAPHPVIHVDDV 247
Score = 30.3 bits (69), Expect = 1.6
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 304 LNEVIRTVDIVVTATGNKN-VVTREHM 329
L + + D+VV+AT + V+ + +
Sbjct: 221 LVDHLARSDVVVSATAAPHPVIHVDDV 247
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 37.2 bits (87), Expect = 0.011
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-ICALQACMDGFSVVKLNEVIRTVD 134
GK + + G+G +G +G V+ D +A V L E+++ D
Sbjct: 142 GKTIGIVGFGRIGTKVGIIANAMGMKVLAY---DILDIREKAEKINAKAVSLEELLKNSD 198
Query: 135 IV---VTATGN-KNVVTREHMDKMKNGCVVCN 162
++ VT + + K ++ + MK+ ++ N
Sbjct: 199 VISLHVTVSKDAKPIIDYPQFELMKDNVIIVN 230
Score = 28.7 bits (65), Expect = 5.0
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 298 GFSVVKLNEVIRTVDIV---VTATGN-KNVVTREHMDKMKNGCVVCN 340
V L E+++ D++ VT + + K ++ + MK+ ++ N
Sbjct: 184 NAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVN 230
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 37.2 bits (87), Expect = 0.011
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDP-ICALQACMDGFSVVKLNEVIRTV 133
GK + + G G +G+ ++ G + Y DP I + G + L E+
Sbjct: 165 GKTLGILGLGRIGREVATRMQSFGMKTIGY----DPIISPEVSASFGVQQLPLEEIWPLC 220
Query: 134 DIV---VTATGN-KNVVTREHMDKMKNGCVVCN 162
D + + ++ + K G V N
Sbjct: 221 DFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVN 253
Score = 29.1 bits (66), Expect = 3.5
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 298 GFSVVKLNEVIRTVDIV---VTATGN-KNVVTREHMDKMKNGCVVCN 340
G + L E+ D + + ++ + K G V N
Sbjct: 207 GVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVN 253
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 36.9 bits (86), Expect = 0.013
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 19/99 (19%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT----EIDPICALQACMDGFSVVKLNEVIR 131
V + G G +G +SL+ G + + + G +L +
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV----ESYVGRE--ELRAFLN 192
Query: 132 TVDIVV------TATGNKNVVTREHMDKMKNGCVVCNMG 164
+++ T ++ E +D++ +G V N+
Sbjct: 193 QTRVLINLLPNTAQT--VGIINSELLDQLPDGAYVLNLA 229
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 285 KAGPFKPSYYSMDGFSVVKLNEVIRTVDIVV------TATGNKNVVTREHMDKMKNGCVV 338
K+ P SY + L + +++ T ++ E +D++ +G V
Sbjct: 173 KSWPGVESYVGREE-----LRAFLNQTRVLINLLPNTAQT--VGIINSELLDQLPDGAYV 225
Query: 339 CNMG 342
N+
Sbjct: 226 LNLA 229
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 34.9 bits (81), Expect = 0.055
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135
GK++ + GYG +G + LG V + D L + V L++++ D+
Sbjct: 145 GKKLGIIGYGHIGTQLGILAESLGMYVYFY---DIENKL-PLGNATQVQHLSDLLNMSDV 200
Query: 136 V---VTAT-GNKNVVTREHMDKMKNGCVVCN 162
V V KN++ + + MK G ++ N
Sbjct: 201 VSLHVPENPSTKNMMGAKEISLMKPGSLLIN 231
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 34.8 bits (81), Expect = 0.065
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRT-VDI 135
G V++ G G VG G + + + D A G + V L +V+ T D+
Sbjct: 175 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDV 234
Query: 136 VV-TATGNKNVVTREHMDKMK 155
A G V+T E +
Sbjct: 235 FAPCAMG--GVITTEVARTLD 253
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 33.7 bits (78), Expect = 0.11
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-ICALQACMDGFSVVKLNEVIRTVD 134
GK + + G+G +G + LG ++ DP +A V L +++ D
Sbjct: 142 GKTIGIIGFGRIGYQVAKIANALGMNILLY---DPYPNEERAKEVNGKFVDLETLLKESD 198
Query: 135 IV---VTATGN-KNVVTREHMDKMKNGCVVCN 162
+V V + +++ E + MK ++ N
Sbjct: 199 VVTIHVPLVESTYHLINEERLKLMKKTAILIN 230
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 34.2 bits (79), Expect = 0.12
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-ICALQACMDGFSVVKLNEVIRTVD 134
GK V + G G +G+ Q + G V+ DP + +A G ++ L++++ D
Sbjct: 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAY---DPYVSPARAAQLGIELLSLDDLLARAD 198
Query: 135 IVVTATG----NKNVVTREHMDKMKNGCVVCN 162
+ ++ +E + K K G ++ N
Sbjct: 199 FISVHLPKTPETAGLIDKEALAKTKPGVIIVN 230
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 33.0 bits (76), Expect = 0.22
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 14/96 (14%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL----QACMDGFSVVKLNEVI 130
GK + G G +G + L ++Y AL + + V + E++
Sbjct: 164 GKTIATIGAGRIGYRVLERLVPFNPKELLY----YDYQALPKDAEEKVGARRVENIEELV 219
Query: 131 RTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 162
DIV G K ++ +E + K K G + N
Sbjct: 220 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVN 255
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 32.9 bits (76), Expect = 0.22
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 181
+ + +RT DIV+ A G V E +K G V +DV + PD +
Sbjct: 204 MIDYLRTADIVIAAMGQPGYVKGEW---IKEGAAV---------VDVGTTPVPDPS 247
Score = 32.9 bits (76), Expect = 0.22
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 359
+ + +RT DIV+ A G V E +K G V +DV + PD +
Sbjct: 204 MIDYLRTADIVIAAMGQPGYVKGEW---IKEGAAV---------VDVGTTPVPDPS 247
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 32.8 bits (76), Expect = 0.26
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-----FS-VVKLNEVIR 131
VV+ G G VG + GLG + I +I+ + L+ +S ++ +
Sbjct: 170 VVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVA 229
Query: 132 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 160
D+++ A G + +V +++M+ G V+
Sbjct: 230 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVI 263
Score = 30.5 bits (70), Expect = 1.4
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 304 LNEVIRTVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 338
+ + D+++ A G + +V +++M+ G V+
Sbjct: 224 IETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVI 263
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 32.8 bits (76), Expect = 0.26
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-----FS-VVKLNEVIR 131
VV+ G G VG + G+G + I +++ + L G + + + ++
Sbjct: 169 VVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ 228
Query: 132 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 160
D+++ A G K +VTR+ + MK G V+
Sbjct: 229 HADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVI 262
Score = 30.5 bits (70), Expect = 1.4
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 304 LNEVIRTVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 338
+ + ++ D+++ A G K +VTR+ + MK G V+
Sbjct: 223 IKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVI 262
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 32.8 bits (76), Expect = 0.26
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-----FS-VVKLNEVIR 131
VV+ G G G + G+G + + +I+ + L A G +S +L ++
Sbjct: 171 VVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK 230
Query: 132 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 160
D+V+ A G K +V+ + MK G V+
Sbjct: 231 RADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
Score = 30.5 bits (70), Expect = 1.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 304 LNEVIRTVDIVVTA---TGNK--NVVTREHMDKMKNGCVV 338
L ++ D+V+ A G K +V+ + MK G V+
Sbjct: 225 LEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVL 264
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 32.6 bits (75), Expect = 0.31
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Query: 68 KRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKL 126
++S + GK + + GYG +G+ K G VI
Sbjct: 113 RQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAY---TRS--SVDQNVDVISESP 167
Query: 127 NEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 162
++ R D V+ A + +V + + + N
Sbjct: 168 ADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVN 207
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 32.5 bits (75), Expect = 0.32
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 181
L+E + DI+V ATG +V E +K G +V ID PD
Sbjct: 202 LDEEVNKGDILVVATGQPEMVKGEW---IKPGAIV---------IDCGINYVPDDK 245
Score = 32.5 bits (75), Expect = 0.32
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT 359
L+E + DI+V ATG +V E +K G +V ID PD
Sbjct: 202 LDEEVNKGDILVVATGQPEMVKGEW---IKPGAIV---------IDCGINYVPDDK 245
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 32.2 bits (74), Expect = 0.44
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 135
GK + + GYG +G + LG V Y D L + L+E+++T D+
Sbjct: 156 GKTLGIVGYGNIGSQVGNLAESLGMTVRYY---DTSDKL-QYGNVKPAASLDELLKTSDV 211
Query: 136 V---VTAT-GNKNVVTREHMDKMKNGCVVCN 162
V V ++ ++T + KMK G + N
Sbjct: 212 VSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 31.7 bits (72), Expect = 0.51
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV 129
+ VV+CG+ E C + L+G + D + G + V L +
Sbjct: 116 RHVVICGWSESTLECLRELRGSEVF--VLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 173
Query: 130 -IRTVDIVVTATGN 142
+R V+ +
Sbjct: 174 NVRGARAVIVDLES 187
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 31.3 bits (72), Expect = 0.62
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 6/103 (5%)
Query: 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDGF 121
+ SLK K +++ G G + +L G +++ L
Sbjct: 117 LKSLKSL-IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE 175
Query: 122 SVVKLNEVIRTVDIVVTATG---NKNVVTREHMDKMKNGCVVC 161
V EVI V ++V T + D +K VV
Sbjct: 176 VVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVV 218
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 30.8 bits (70), Expect = 0.63
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP----ICALQACMDGFSVVK----LNEVIR 131
++CG+ + L G + + P Q D V+ + V++
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLK 65
Query: 132 TVDI-----VVTATGN 142
I ++ + N
Sbjct: 66 KAGIDRCRAILALSDN 81
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 31.6 bits (72), Expect = 0.67
Identities = 35/254 (13%), Positives = 66/254 (25%), Gaps = 59/254 (23%)
Query: 163 MGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCSSLPSFVVS 222
MG ++D+ + R D W + ++D+ + RIV + G L L ++
Sbjct: 49 MGV---QVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKFLPKEELWPYL-- 103
Query: 223 ITACTQALALIELFNAPSGRYKSDV------------YLLPKKMDE-YVASLHLPTFDAH 269
+I + V LL + + H
Sbjct: 104 ---HEYVNKIINFYREEGKFP--QVVTTHYGDGGLAGVLLKNIKGLPFTFTGH------- 151
Query: 270 LTELSDEQAKYMGLNKAGPFKPSYYSMDGFS--VVKLNEVIRTVDIVVTATGN------- 320
S K LN F ++ + D ++ +T
Sbjct: 152 ----SLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYS 207
Query: 321 ----KNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVD---HVIWP 373
+ V E DK V+ G ++ K + +
Sbjct: 208 HDLYRGAVNVEDDDKFS---VIPP-G-----VNTRVFDGEYGDKIKAKITKYLERDLGSE 258
Query: 374 DGKRIVLLAEGRLV 387
+ ++A RL
Sbjct: 259 RMELPAIIASSRLD 272
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 31.3 bits (72), Expect = 0.67
Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP--ICALQACMDG 120
++ LK+ +++ G G KG L + + + ++
Sbjct: 105 VNGLKQ-IYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINK 163
Query: 121 FSVVKLNEVIRTVDIVVTATG---NKNVVTREHMDKMKNGCVVC 161
++ + DI++ T N N + ++++ + +V
Sbjct: 164 INLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVS 207
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 31.1 bits (71), Expect = 0.95
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 126 LNEVIRTVDIVVTATGNKN-VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLRTPDL- 180
+ E + D+++T T ++ E +K G + +G E+D ++ L
Sbjct: 190 VQEAVAGADVIITVTLATEPILFGEW---VKPGAHINAVGASRPDWRELDDELMKEAVLY 246
Query: 181 --TWEKVRSQVDHVIWPDGKRIVLLAE 205
+ E + V+ + L E
Sbjct: 247 VDSQEAALKESGDVLLSGAEIFAELGE 273
Score = 31.1 bits (71), Expect = 0.95
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 304 LNEVIRTVDIVVTATGNKN-VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLRTPDL- 358
+ E + D+++T T ++ E +K G + +G E+D ++ L
Sbjct: 190 VQEAVAGADVIITVTLATEPILFGEW---VKPGAHINAVGASRPDWRELDDELMKEAVLY 246
Query: 359 --TWEKVRSQVDHVIWPDGKRIVLLAE 383
+ E + V+ + L E
Sbjct: 247 VDSQEAALKESGDVLLSGAEIFAELGE 273
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 30.5 bits (70), Expect = 1.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 179
L+ R D+++ A G N++ + +K G +V +DV R
Sbjct: 197 LSLYTRQADLIIVAAGCVNLLRSDM---VKEGVIV---------VDVGINRLES 238
Score = 30.5 bits (70), Expect = 1.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 357
L+ R D+++ A G N++ + +K G +V +DV R
Sbjct: 197 LSLYTRQADLIIVAAGCVNLLRSDM---VKEGVIV---------VDVGINRLES 238
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 30.5 bits (70), Expect = 1.2
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 179
L + D+++ A G + + +K G +V IDV R +
Sbjct: 196 LRHHVENADLLIVAVGKPGFIPGDW---IKEGAIV---------IDVGINRLEN 237
Score = 30.5 bits (70), Expect = 1.2
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 357
L + D+++ A G + + +K G +V IDV R +
Sbjct: 196 LRHHVENADLLIVAVGKPGFIPGDW---IKEGAIV---------IDVGINRLEN 237
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 30.8 bits (70), Expect = 1.2
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 118 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 177
+ +S L + D+V+T ++N +K G V I+ +
Sbjct: 231 LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEY--IKEGAVC---------INFACTKN 279
Query: 178 PD 179
Sbjct: 280 FS 281
Score = 30.8 bits (70), Expect = 1.2
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
+ +S L + D+V+T ++N +K G V I+ +
Sbjct: 231 LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEY--IKEGAVC---------INFACTKN 279
Query: 356 PD 357
Sbjct: 280 FS 281
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 30.5 bits (70), Expect = 1.3
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 172
+ + R+ IVV A G + RE + G VV IDV
Sbjct: 187 IGSMTRSSKIVVVAVGRPGFLNREM---VTPGSVV---------IDV 221
Score = 30.5 bits (70), Expect = 1.3
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350
+ + R+ IVV A G + RE + G VV IDV
Sbjct: 187 IGSMTRSSKIVVVAVGRPGFLNREM---VTPGSVV---------IDV 221
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 30.6 bits (70), Expect = 1.3
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GFSVVKLNEVIRT-V 133
G V + G G V K C+ L G + +T+++ A+ A + G V N +
Sbjct: 173 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNK-AAVSAAVAEEGADAVAPNAIYGVTC 231
Query: 134 DIVV-TATGNKNVVTREHMDKMK 155
DI A G V+ + ++K
Sbjct: 232 DIFAPCALG--AVLNDFTIPQLK 252
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 30.1 bits (69), Expect = 1.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 179
L + R DIVV A G +++T + ++ G V IDV RT D
Sbjct: 197 LPALTRQADIVVAAVGVAHLLTADM---VRPGAAV---------IDVGVSRTDD 238
Score = 30.1 bits (69), Expect = 1.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 357
L + R DIVV A G +++T + ++ G V IDV RT D
Sbjct: 197 LPALTRQADIVVAAVGVAHLLTADM---VRPGAAV---------IDVGVSRTDD 238
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 30.1 bits (69), Expect = 1.5
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 179
L + + D+VV A G +V E +K G +V IDV R D
Sbjct: 198 LADHVSRADLVVVAAGKPGLVKGEW---IKEGAIV---------IDVGINRQAD 239
Score = 30.1 bits (69), Expect = 1.5
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD 357
L + + D+VV A G +V E +K G +V IDV R D
Sbjct: 198 LADHVSRADLVVVAAGKPGLVKGEW---IKEGAIV---------IDVGINRQAD 239
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 30.3 bits (69), Expect = 1.5
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 123 VVKLNEVIRTVDIVVTATGNKN-VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLR 176
V+ E D++VT T ++ VV E ++ G + +G E+DV L+
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKPVVKAEW---VEEGTHINAIGADGPGKQELDVEILK 232
Score = 30.3 bits (69), Expect = 1.5
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 301 VVKLNEVIRTVDIVVTATGNKN-VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLR 354
V+ E D++VT T ++ VV E ++ G + +G E+DV L+
Sbjct: 178 SVQPAEEASRCDVLVTTTPSRKPVVKAEW---VEEGTHINAIGADGPGKQELDVEILK 232
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 30.2 bits (69), Expect = 1.5
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 126 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 172
L DI++ A G N +T + +K G VV IDV
Sbjct: 198 LKSHTTKADILIVAVGKPNFITADM---VKEGAVV---------IDV 232
Score = 30.2 bits (69), Expect = 1.5
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV 350
L DI++ A G N +T + +K G VV IDV
Sbjct: 198 LKSHTTKADILIVAVGKPNFITADM---VKEGAVV---------IDV 232
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 29.4 bits (67), Expect = 1.5
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 79 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP 110
+L GYG VG + L + + E
Sbjct: 9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 29.8 bits (68), Expect = 2.2
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ------- 115
+ +L+ ++ GK++++ G G +G SL I + A +
Sbjct: 128 VQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDE 187
Query: 116 ACMDGFSVVKLNEVIRTVDIVVTAT 140
FS+ + + DI++ T
Sbjct: 188 RRSAYFSLAEAETRLAEYDIIINTT 212
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds
L-proline, 2 bundle, beta barrel, rossmann fold, lyase;
HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP:
c.2.1.13 PDB: 1u7h_A*
Length = 350
Score = 29.6 bits (67), Expect = 2.6
Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 20/139 (14%)
Query: 259 ASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSMDGFSVVK---LNEVIRTVDI 313
+ A L E+ + + G ++ + + E ++ VDI
Sbjct: 141 SEFQA---LAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDI 197
Query: 314 VVTATGNKN---VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLRTPDL---TWEKVR 364
+ T T +K ++T + ++ G + +G TE+ + LR + + R
Sbjct: 198 ITTVTADKAYATIITPDM---LEPGMHLNAVGGDCPGKTELHADVLRNARVFVEYEPQTR 254
Query: 365 SQVDHVIWPDGKRIVLLAE 383
+ + P +V L
Sbjct: 255 IEGEIQQLPADFPVVDLWR 273
Score = 28.8 bits (65), Expect = 4.1
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 126 LNEVIRTVDIVVTATGNKN---VVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLRTPD 179
+ E ++ VDI+ T T +K ++T + ++ G + +G TE+ + LR
Sbjct: 188 VAEAVKGVDIITTVTADKAYATIITPDM---LEPGMHLNAVGGDCPGKTELHADVLRNAR 244
Query: 180 L---TWEKVRSQVDHVIWPDGKRIVLLAE 205
+ + R + + P +V L
Sbjct: 245 VFVEYEPQTRIEGEIQQLPADFPVVDLWR 273
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 29.5 bits (67), Expect = 2.9
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 68 KRSTDVMFG----GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPIC---ALQACMD 119
+ GK + G G +GK Q LK GC ++Y D + L+
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYH---DRLQMAPELEKETG 207
Query: 120 GFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCN 162
V LNE++ D++V + + +E + K+K G ++ N
Sbjct: 208 AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 29.0 bits (66), Expect = 3.3
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCV-IYIT-------EIDPICALQACMDGFSVVKLNE 128
+ VV+ G G + +L +G I++ + AL + FS+ +L+E
Sbjct: 108 KEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAK-----ALDFPVKIFSLDQLDE 162
Query: 129 VIRTVDIVVTAT 140
V++ + T
Sbjct: 163 VVKKAKSLFNTT 174
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 28.7 bits (65), Expect = 4.3
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 20/115 (17%)
Query: 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT------------EIDPI 111
+L+ K +V+ G G + L I I EI
Sbjct: 116 RMALEEE-IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK 173
Query: 112 CALQACMDGFSVVKLNEVIRTVDIVVTAT-----GNKNVVTREHMDKMKNGCVVC 161
+ + L+ + VDI++ AT N +V +K++ VV
Sbjct: 174 LNKKFG-EEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVM 227
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 28.9 bits (64), Expect = 5.0
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDGFSVVKLNEVIR 131
++V+ G G C VI +D G ++ +
Sbjct: 52 ATRLVILGTKGFGAHLMNVRHERPCEVIAA--VDDFRYHSGELYYGLPIISTDRFTE 106
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 28.6 bits (65), Expect = 5.0
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 64 IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFS 122
+++LK + G +VL G G G+ +L+ G +++ P AL + G
Sbjct: 105 LEALKAG-GIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR 162
Query: 123 VVKLNEVIRTVDIVVTAT 140
V L + R ++V AT
Sbjct: 163 AVPLEK-AREARLLVNAT 179
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.7 bits (64), Expect = 5.3
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 15/116 (12%)
Query: 63 IIDSLKRSTDVMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQAC---- 117
+ + ++ GK+ V+ G VG L G G + + A A
Sbjct: 105 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN 164
Query: 118 ---------MDGFSVVKLNEVIRTVDIVVTATG-NKNVVTREHMDKMKNGCVVCNM 163
+ E ++ V TA ++ + + +V +
Sbjct: 165 KRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADY 220
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 28.4 bits (64), Expect = 5.6
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPIC--ALQACMDGFSVVKLNEVIRTV 133
G+ + + G G VG+ K G V++ DP ++ + V L +++
Sbjct: 168 GETLGIIGLGRVGQAVALRAKAFGFNVLFY---DPYLSDGVERALGLQRVSTLQDLLFHS 224
Query: 134 DIVVTATG----NKNVVTREHMDKMKNGCVVCN 162
D V G N +++ + +M+ G + N
Sbjct: 225 DCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 27.9 bits (63), Expect = 6.8
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 255 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGFSVVKLNEVIRT 310
+ ++L D L E +D A+ GL P P +G + +V+
Sbjct: 68 EALDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGF-QVLHL 122
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 27.6 bits (62), Expect = 6.9
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 14/95 (14%)
Query: 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACM 118
+ + +V+ G G +G G + + + + L +
Sbjct: 7 HHHHHHMSKKQKSK----YIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEF 62
Query: 119 DGFSVV-------KLNEV-IRTVDIVVTATGNKNV 145
GF+VV L E + D+V T + +
Sbjct: 63 SGFTVVGDAAEFETLKECGMEKADMVFAFTNDDST 97
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 28.2 bits (63), Expect = 7.3
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 18/125 (14%)
Query: 30 AQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESII----DSLKRSTDVMFGGKQVVLCGY 85
A A +P+++ + SV + +L E I+ + + G KQ+ + G+
Sbjct: 3 AAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGW 62
Query: 86 GEVGKGCCQSLKGLGCVIYITEIDPICAL--------QACMDGFSVVKLN-----EVIRT 132
G G Q+L+ ++I L +A GF+ E +
Sbjct: 63 GSQGPAQAQNLRDSLAEAK-SDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSG 121
Query: 133 VDIVV 137
D+V+
Sbjct: 122 SDLVL 126
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 28.4 bits (64), Expect = 7.4
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 19/86 (22%)
Query: 51 TKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITE-- 107
T + +Y ++ F G +V + G G V + + G VI ++
Sbjct: 211 TGYGLVYFTEA-MLKRHGMG----FEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSS 265
Query: 108 ---IDPICALQACMDGFSVVKLNEVI 130
+D GF+ KL +I
Sbjct: 266 GTVVDE--------SGFTKEKLARLI 283
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 28.0 bits (63), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 126 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 163
+ VDI+VT T G ++TRE +D MK G V+ ++
Sbjct: 249 FAAQAKEVDIIVT-TALIPGKPAPKLITREMVDSMKAGSVIVDL 291
Score = 28.0 bits (63), Expect = 8.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 304 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 341
+ VDI+VT T G ++TRE +D MK G V+ ++
Sbjct: 249 FAAQAKEVDIIVT-TALIPGKPAPKLITREMVDSMKAGSVIVDL 291
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 28.0 bits (63), Expect = 8.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 126 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 163
+ + + DI +T T G ++T E + KMK G V+ ++
Sbjct: 251 VLKELVKTDIAIT-TALIPGKPAPVLITEEMVTKMKPGSVIIDL 293
Score = 28.0 bits (63), Expect = 8.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 304 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 341
+ + + DI +T T G ++T E + KMK G V+ ++
Sbjct: 251 VLKELVKTDIAIT-TALIPGKPAPVLITEEMVTKMKPGSVIIDL 293
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 28.0 bits (63), Expect = 8.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 126 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 163
L + I DIV+T T G +VT M+ G VV ++
Sbjct: 259 LEDAITKFDIVIT-TALVPGRPAPRLVTAAAATGMQPGSVVVDL 301
Score = 28.0 bits (63), Expect = 8.3
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 304 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 341
L + I DIV+T T G +VT M+ G VV ++
Sbjct: 259 LEDAITKFDIVIT-TALVPGRPAPRLVTAAAATGMQPGSVVVDL 301
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 28.0 bits (63), Expect = 8.5
Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 20/98 (20%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VI----YITEIDPICALQACMDGFS-VVKLNEVI 130
G+ + + GYG++G+ + G V+ ++ +A DGF+ + +
Sbjct: 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKE------RARADGFAVAESKDALF 213
Query: 131 RTVDIV------VTATGNKNVVTREHMDKMKNGCVVCN 162
D++ T ++++T + +MK + N
Sbjct: 214 EQSDVLSVHLRLNDET--RSIITVADLTRMKPTALFVN 249
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 28.0 bits (63), Expect = 8.9
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 121 FSVVKLNEVIRTVDIVVTATG-NKNVVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLR 176
+ ++ DIVVTAT + + ++ G V +G E+D +LR
Sbjct: 172 ARMAAPADIAAQADIVVTATRSTTPLFAGQA---LRAGAFVGAIGSSLPHTRELDDEALR 228
Score = 28.0 bits (63), Expect = 8.9
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 299 FSVVKLNEVIRTVDIVVTATG-NKNVVTREHMDKMKNGCVVCNMG---HSNTEIDVNSLR 354
+ ++ DIVVTAT + + ++ G V +G E+D +LR
Sbjct: 172 ARMAAPADIAAQADIVVTATRSTTPLFAGQA---LRAGAFVGAIGSSLPHTRELDDEALR 228
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 28.0 bits (63), Expect = 9.9
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 23/88 (26%)
Query: 51 TKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVI------- 103
T + +Y E ++ SL + V+ G G V C Q L L +
Sbjct: 231 TGYGLVYFVLE-VLKSLNIP----VEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSN 285
Query: 104 -YITEIDPICALQACMDGFSVVKLNEVI 130
Y+ +P +GF+ L +I
Sbjct: 286 GYV--YEP--------NGFTHENLEFLI 303
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 27.7 bits (62), Expect = 9.9
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 126 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 163
+ E I DIV+T T G +VTRE +D MK G VV ++
Sbjct: 269 VAEHIAKQDIVIT-TALIPGRPAPRLVTREMLDSMKPGSVVVDL 311
Score = 27.7 bits (62), Expect = 9.9
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 304 LNEVIRTVDIVVTAT----GNK--NVVTREHMDKMKNGCVVCNM 341
+ E I DIV+T T G +VTRE +D MK G VV ++
Sbjct: 269 VAEHIAKQDIVIT-TALIPGRPAPRLVTREMLDSMKPGSVVVDL 311
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,236,269
Number of extensions: 497340
Number of successful extensions: 1508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1433
Number of HSP's successfully gapped: 155
Length of query: 542
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 444
Effective length of database: 3,965,535
Effective search space: 1760697540
Effective search space used: 1760697540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)