RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4626
(542 letters)
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 214 bits (546), Expect = 7e-68
Identities = 85/161 (52%), Positives = 114/161 (70%), Gaps = 1/161 (0%)
Query: 55 NLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 114
N+Y CR S+ D L R+TD + GK VV+CGYG+VGKGC S+KGLG +YITEIDPICA+
Sbjct: 1 NVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAI 60
Query: 115 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 174
QA M+GF+VV L+E++ D +T TGN +V+ EH+ KMKN VV N+GH + EI VN
Sbjct: 61 QAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNE 120
Query: 175 LRT-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214
L + E V+ QVD + P+G +I++LA GRL+NL C+
Sbjct: 121 LFNYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCA 161
Score = 118 bits (297), Expect = 6e-32
Identities = 45/99 (45%), Positives = 65/99 (65%), Gaps = 1/99 (1%)
Query: 295 SMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
M+GF+VV L+E++ D +T TGN +V+ EH+ KMKN VV N+GH + EI VN L
Sbjct: 63 VMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF 122
Query: 355 T-PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 392
+ E V+ QVD + P+G +I++LA GRL+NL C+
Sbjct: 123 NYKGIHIENVKPQVDRITLPNGNKIIVLARGRLLNLGCA 161
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 195 bits (498), Expect = 8e-61
Identities = 81/161 (50%), Positives = 111/161 (68%)
Query: 54 DNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA 113
DNLY CRES+ID +KR+TDVM GK V+ GYG+VGKGC Q+L+G G + ITEIDPI A
Sbjct: 1 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA 60
Query: 114 LQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN 173
LQA M+G+ V ++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV
Sbjct: 61 LQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVK 120
Query: 174 SLRTPDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 214
L + ++ QVD +G+RI+LLAEGRLVNL C+
Sbjct: 121 WLNENAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCA 161
Score = 107 bits (269), Expect = 5e-28
Identities = 39/97 (40%), Positives = 61/97 (62%)
Query: 296 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT 355
M+G+ V ++E + +I VT TG +++ H ++MK+ +VCN+GH + EIDV L
Sbjct: 65 MEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE 124
Query: 356 PDLTWEKVRSQVDHVIWPDGKRIVLLAEGRLVNLSCS 392
+ ++ QVD +G+RI+LLAEGRLVNL C+
Sbjct: 125 NAVEKVNIKPQVDRYRLKNGRRIILLAEGRLVNLGCA 161
Score = 28.0 bits (62), Expect = 2.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 530 DNLYMCRESIID 541
DNLY CRES+ID
Sbjct: 1 DNLYGCRESLID 12
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein
hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 143 bits (361), Expect = 1e-39
Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 2/109 (1%)
Query: 435 SYTGLPVFAWRGETEEDFWWCIDKCVN--SWQPNMILDDGGDATHWMLKKYPTMFKAIKG 492
+ G+PV+AW+GET+E++ WCI++ + NMILDDGGD T+ + KYP + I+G
Sbjct: 91 AKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRG 150
Query: 493 IVEESLTGVHRLYQLSKAGKLTVPAMNVNDSVTKTKFDNLYMCRESIID 541
I EE+ TGVH LY++ G L VPA+NVNDSVTK+KF ++ S +
Sbjct: 151 ISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFHPSFVMSNSFTN 199
Score = 107 bits (268), Expect = 8e-27
Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 217 PSFVVSITACTQALALIELFNAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDE 276
PSFV+S + Q +A IEL+ P +Y V+ LPKK+DE VA HL + LT+L+++
Sbjct: 189 PSFVMSNSFTNQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEK 247
Query: 277 QAKYMGLNKAGPFKPSYY 294
QA+Y+G++ GPFKP +Y
Sbjct: 248 QAQYLGMSCDGPFKPDHY 265
Score = 61.8 bits (150), Expect = 3e-11
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G ++ A G L VPA+NVNDSVTK+KF ++ S + + ++ + +
Sbjct: 158 GVHNLYKMMANGILKVPAINVNDSVTKSKFHPSFVMSNSFTNQVMAQIELWTHPDKYPVG 217
Query: 84 GYGEVGKGCCQS----LKGLGCVIYITEIDPICALQACMDGFSV 123
+ K L L ++ + QA G S
Sbjct: 218 VHFLPKKLDEAVAEAHLGKLNV-----KLTKLTEKQAQYLGMSC 256
Score = 57.9 bits (140), Expect = 6e-10
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+R KPLK ARI GC H+ +TA
Sbjct: 27 MPGLMRMRERYSASKPLKGARIAGCLHMTVETA 59
>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein
hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId:
5833]}
Length = 313
Score = 124 bits (312), Expect = 3e-32
Identities = 37/79 (46%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 217 PSFVVSITACTQALALIELF-NAPSGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD 275
P+FV+S + C Q A ++L+ N + +Y++ VYLLPK +DE VA HL +A LTEL D
Sbjct: 233 PAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDD 292
Query: 276 EQAKYMGLNKAGPFKPSYY 294
Q +++G+NK+GPFK + Y
Sbjct: 293 NQCQFLGVNKSGPFKSNEY 311
Score = 96.1 bits (239), Expect = 2e-22
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 52/154 (33%)
Query: 438 GLPVFAWRGETEEDFWWCIDKCVN-----SWQPNMILDDGGDATHWML------------ 480
+ VFAW+ ET E++WWC++ + P+MI+DDGGDAT +
Sbjct: 93 NVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEK 152
Query: 481 -----------------------------KKYPTMFKAIKGIVEESLTGVHRLYQLSKAG 511
KK+ + K I G+ EE+ TGV RL ++ K
Sbjct: 153 NILPDPEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQN 212
Query: 512 KLTVPAMNVNDSVTKTKFDN------LYMCRESI 539
+L A+NVND+VTK K+D+ C ++
Sbjct: 213 ELLFTAINVNDAVTKQKYDHPAFVMSFSFCNQTF 246
Score = 62.6 bits (152), Expect = 3e-11
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MPGIMALRKRAGDDKPLKNARIVGCTHINAQTA 33
MPG+M +R+ G D+PLKNA+I GC H+ + A
Sbjct: 25 MPGLMRIREEYGKDQPLKNAKITGCLHMTVECA 57
Score = 46.0 bits (109), Expect = 6e-06
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 4 IMALRKRAGDDKPLK----NARIVGCTHI--------NAQTAAGKLTVPAMNVNDSVTKT 51
+ L K + P K +I+G + +L A+NVND+VTK
Sbjct: 169 FLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQ 228
Query: 52 KFDN------LYMCRESI--IDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVI 103
K+D+ C ++ +D + + K +L + + LK L +
Sbjct: 229 KYDHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYH-LKKLNASL 287
Score = 33.7 bits (77), Expect = 0.044
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 39/129 (30%)
Query: 24 GCTHINAQTAAGKLTVPAMNVNDSVTKTKFDNLYMCRESIIDSLKRSTDVMFGGKQVVLC 83
G + L P N+ + L + + SI+ + K+ T++
Sbjct: 142 GVEYEKLYEEKNILPDPEKAKNEE----ERCFLTLLKNSILKNPKKWTNIAKK------- 190
Query: 84 GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK 143
+I ++E V++L ++ + +++ TA
Sbjct: 191 ------------------IIGVSEETTTG----------VLRLKKMDKQNELLFTAINVN 222
Query: 144 NVVTREHMD 152
+ VT++ D
Sbjct: 223 DAVTKQKYD 231
Score = 29.9 bits (67), Expect = 0.82
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 301 VVKLNEVIRTVDIVVTATGNKNVVTREHMD 330
V++L ++ + +++ TA + VT++ D
Sbjct: 202 VLRLKKMDKQNELLFTAINVNDAVTKQKYD 231
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 41.0 bits (95), Expect = 4e-05
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 20/128 (15%)
Query: 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---------LNE 128
+ VV+CG+ E C + L+G +++ D + G + V
Sbjct: 1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 58
Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
+R V+ + + + K V + + ++ LR +
Sbjct: 59 NVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLR---------MAG 109
Query: 189 VDHVIWPD 196
D VI P
Sbjct: 110 ADQVISPF 117
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 41.4 bits (96), Expect = 5e-05
Identities = 15/147 (10%), Positives = 40/147 (27%), Gaps = 25/147 (17%)
Query: 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLN 127
++CG+ + L G + + P ++ D L
Sbjct: 6 FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLK 65
Query: 128 EV-IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 186
+ I ++ + N + V + + ++N ++
Sbjct: 66 KAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK---------M 116
Query: 187 SQVDHVIWPD---GKRIVLLAEGRLVN 210
D ++ P + + + G +N
Sbjct: 117 VHPDIILSPQLFGSEILARVLNGEEIN 143
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 40.5 bits (94), Expect = 2e-04
Identities = 20/124 (16%), Positives = 38/124 (30%)
Query: 59 CRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM 118
E++ ++ G V++ G G VG G + + + D A
Sbjct: 9 VFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA 68
Query: 119 DGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTP 178
G + V L +V+ T V V+T E + V + + + +
Sbjct: 69 LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHA 128
Query: 179 DLTW 182
Sbjct: 129 RGIL 132
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 38.4 bits (88), Expect = 4e-04
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 21/136 (15%)
Query: 78 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---------FSVVKLNE 128
KQ + G G G + L +G + +I+ L+
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60
Query: 129 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 188
IR + V+ A G + +K + + L +
Sbjct: 61 GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE---------KIG 111
Query: 189 VDHVIWPD---GKRIV 201
D +I P+ G +I
Sbjct: 112 ADRIIHPEKDMGVKIA 127
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 36.9 bits (85), Expect = 0.003
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDI- 135
G V + G G V K C+ L G + +T+++ A + + I V
Sbjct: 39 GLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCD 98
Query: 136 VVTATGNKNVVTREHMDKMKNGCVVCN 162
+ V+ + ++K + +
Sbjct: 99 IFAPCALGAVLNDFTIPQLKAKVIAGS 125
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 36.2 bits (83), Expect = 0.004
Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 15/138 (10%)
Query: 56 LYMCRESIIDSLKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL 114
+ + I + GK+ ++ E VG+ L G +Y +++ I
Sbjct: 8 VKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKF 67
Query: 115 QA----------CMDGFSVVK--LNEVIRTVDIVVTATGNKNVVTREHMDK--MKNGCVV 160
D + L + D+V+T ++N K
Sbjct: 68 TRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFA 127
Query: 161 CNMGHSNTEIDVNSLRTP 178
C S+ + SL P
Sbjct: 128 CTKNFSDDVKEKASLYVP 145
Score = 29.3 bits (65), Expect = 0.67
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 304 LNEVIRTVDIVVTATGNKNVVTREHMDK--MKNGCVVCNMGHSNTEIDVNSLRTP 356
L + D+V+T ++N K C S+ + SL P
Sbjct: 91 LKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKASLYVP 145
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 35.3 bits (80), Expect = 0.006
Identities = 18/117 (15%), Positives = 40/117 (34%)
Query: 80 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 139
+++ G G VG +SL G I + +ID +A + ++V + + +
Sbjct: 3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAG 62
Query: 140 TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD 196
+ ++ + N + + + R VD V+ P+
Sbjct: 63 IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 119
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 35.3 bits (81), Expect = 0.009
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 124 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 176
+ D+V++ +T E + K KN + G + +D+ S
Sbjct: 81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAI 133
Score = 35.3 bits (81), Expect = 0.009
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 302 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 354
+ D+V++ +T E + K KN + G + +D+ S
Sbjct: 81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAI 133
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase
(KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 226
Score = 32.2 bits (73), Expect = 0.099
Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 18/142 (12%)
Query: 38 TVPAMNVNDSVTKTKFDNLYMCRESII----DSLKRSTDVMFGGKQVVLCGYGEVGKGCC 93
+ + + SV K + L E I+ + D G KQ+ + G+G
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 94 QSLKGLGC-------VIYITEIDPICALQACMDGFSVVKLN-----EVIRTVDIVVTATG 141
Q+LK V +A GFS E I D+V+
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 142 NKN--VVTREHMDKMKNGCVVC 161
+ + MK ++
Sbjct: 121 DSAQADNYEKVFSHMKPNSILG 142
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 30.0 bits (67), Expect = 0.16
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 75 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN----EVI 130
+ GK VV+ G G G C G + + + E +
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWL 62
Query: 131 RTVDIVVTATG 141
D++V + G
Sbjct: 63 MAADLIVASPG 73
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 31.4 bits (71), Expect = 0.16
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEVIRTVDI 135
GK+V + GYG G +LK G + + + G V + + D+
Sbjct: 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADV 75
Query: 136 VVTATGN---KNVVTREHMDKMKNGCVVC 161
V+ T + + E +K G +
Sbjct: 76 VMILTPDEFQGRLYKEEIEPNLKKGATLA 104
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 30.4 bits (68), Expect = 0.48
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 20/121 (16%)
Query: 75 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTV 133
FG K + G+G VG + L G + + E D +D + T+
Sbjct: 34 FGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTI 93
Query: 134 ------------------DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 175
DI++ A ++ +T+ + ++K + T
Sbjct: 94 LGFPKAKIYEGSILEVDCDILIPA-ASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIF 152
Query: 176 R 176
Sbjct: 153 L 153
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 29.7 bits (66), Expect = 0.79
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 58 MCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC 117
+ D+LK GK + + GYG G + + + + D
Sbjct: 21 AAKVLGWDTLK--------GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS-KGGIYN 71
Query: 118 MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN 173
DG + ++ + V G N+ E ++ + + T+ + +
Sbjct: 72 PDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITKKNAD 127
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 28.6 bits (63), Expect = 2.0
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 20/120 (16%)
Query: 52 KFDNLYMCRESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI 111
K N + + + G +++I EID I
Sbjct: 71 KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQN---GIVFIDEIDKI 127
Query: 112 C-----------------ALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKM 154
C L ++G +V + +++T I+ A+G V +
Sbjct: 128 CKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPE 187
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 28.1 bits (62), Expect = 2.3
Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 14/142 (9%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRT--- 132
GK V L G+G V G + L LG + ++ D +G + + +
Sbjct: 36 GKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYI---YDPEGITTEEKINYMLEMRA 92
Query: 133 -----VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRS 187
V G + + + + + C + + ++ +
Sbjct: 93 SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKY--YIE 150
Query: 188 QVDHVIWPDGKRIVLLAEGRLV 209
+ + R ++ +V
Sbjct: 151 VANMPTTNEALRFLMQQPNMVV 172
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 27.7 bits (60), Expect = 2.7
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 68 KRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN 127
+ GK++ + GYG +G + LG +Y +I+ L + L
Sbjct: 35 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLL 94
Query: 128 EVIRTVDIVVTAT-GNKNVVTREHMDKMKNGCVVCNMGH 165
+ V + V KN++ + + MK G ++ N
Sbjct: 95 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 133
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin
reductase) {Escherichia coli [TaxId: 562]}
Length = 148
Score = 26.5 bits (57), Expect = 5.5
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 10/131 (7%)
Query: 373 PDGKRIVLLAEGRLVNLSCSSLPSFVVSITACTQRDKSSLIPCYHLRFASNLAKYLLNSL 432
P + + +LA G + S + + L+ A L+ L
Sbjct: 4 PHCETLWMLATG----TAIGPYLSILRLGKDLDRFKNLVLV-HAARYAADLSYLPLMQEL 58
Query: 433 TSSYTGLPVFAWRGETEEDFWWCIDKCVNSWQPNMILDDGGDATHWMLKKY-----PTMF 487
Y G E + + + G + P M
Sbjct: 59 EKRYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMV 118
Query: 488 KAIKGIVEESL 498
+ + +++E+
Sbjct: 119 RDTQQLLKETR 129
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 26.8 bits (59), Expect = 6.4
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 61 ESIIDSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID 109
+ + G+ V G G ++ + V+ ++ +
Sbjct: 181 PRALKIYRA-----LQGRINVSFGIGTHFTCDLPGVEPMNIVVKMSACN 224
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 26.3 bits (56), Expect = 7.8
Identities = 14/99 (14%), Positives = 29/99 (29%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 136
G++VV+ G G G + +K I +T I+P C V+ + + ++
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61
Query: 137 VTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 175
+ + E +
Sbjct: 62 YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRC 100
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 522
Score = 27.0 bits (59), Expect = 8.1
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 485 TMFKAIKGIVEESLTGVHRLYQLSKAGKLTVPAM 518
+ + +LT + L L V M
Sbjct: 479 HLLPNVARCERTTLTFLQNLEHLDGMVAPEVCPM 512
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 26.6 bits (58), Expect = 8.3
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 472 GGDATHWMLKKYPTMFKAIKGIV 494
GG + Y +F G+
Sbjct: 21 GGYMAAQLGVAYSDVFNVGFGVF 43
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus
cereus [TaxId: 1396]}
Length = 370
Score = 26.6 bits (58), Expect = 8.7
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 240 SGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSMDGF 299
+ + + K D + + H D ++D A+ +GL P+Y
Sbjct: 78 TDKAYGKIIEKCIKNDIAIYAAHTN-VDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKK 136
Query: 300 SVV 302
VV
Sbjct: 137 VVV 139
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 26.3 bits (57), Expect = 9.9
Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 77 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI-----R 131
GK V + G G VG+ L+ +G + + I + +G +V + +
Sbjct: 31 GKTVAIQGMGNVGRWTAYWLEKMGAKVIA--VSDINGVAYRKEGLNVELIQKNKGLTGPA 88
Query: 132 TVDIVVTATGNKNVVTREHMDKMKNGCVV-CNMGHSNTEIDVNSLR 176
V++ T + V + + K+ V + + + ++
Sbjct: 89 LVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVK 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.412
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,032,207
Number of extensions: 95839
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 421
Number of HSP's successfully gapped: 49
Length of query: 542
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 452
Effective length of database: 1,171,896
Effective search space: 529696992
Effective search space used: 529696992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)