Query psy4627
Match_columns 270
No_of_seqs 228 out of 783
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 21:39:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4447|consensus 99.9 3.4E-22 7.4E-27 172.2 5.7 93 148-270 68-161 (173)
2 KOG3960|consensus 99.7 2.1E-16 4.6E-21 145.3 9.7 63 156-218 116-178 (284)
3 KOG4029|consensus 99.7 1.9E-16 4E-21 141.2 7.9 64 155-218 106-171 (228)
4 KOG3910|consensus 99.6 7.1E-16 1.5E-20 152.1 8.6 131 79-216 443-586 (632)
5 KOG3898|consensus 99.6 9.7E-16 2.1E-20 140.2 7.4 66 154-219 68-134 (254)
6 PF00010 HLH: Helix-loop-helix 99.4 4.1E-13 8.9E-18 95.2 6.9 52 158-209 1-55 (55)
7 cd00083 HLH Helix-loop-helix d 99.3 6.5E-12 1.4E-16 88.9 8.1 56 157-212 3-59 (60)
8 smart00353 HLH helix loop heli 99.2 3.7E-11 8.1E-16 83.8 7.2 51 163-213 1-52 (53)
9 KOG4395|consensus 99.2 2.5E-11 5.5E-16 112.1 6.1 63 154-216 170-233 (285)
10 KOG0561|consensus 98.9 2.1E-09 4.7E-14 101.8 6.6 62 149-210 51-112 (373)
11 KOG1318|consensus 98.2 9.9E-06 2.1E-10 79.6 11.2 64 150-213 225-290 (411)
12 KOG1319|consensus 98.0 1.4E-05 3E-10 72.1 6.7 57 157-213 61-122 (229)
13 KOG2483|consensus 97.8 4.5E-05 9.7E-10 70.1 6.8 60 156-215 57-117 (232)
14 KOG4447|consensus 97.1 0.00035 7.6E-09 61.3 2.5 56 157-212 20-76 (173)
15 KOG4304|consensus 96.3 0.0051 1.1E-07 57.1 4.4 57 156-212 30-92 (250)
16 KOG3561|consensus 95.5 0.022 4.8E-07 60.5 5.9 56 156-211 18-75 (803)
17 KOG2588|consensus 95.1 0.018 3.9E-07 61.8 3.5 59 156-215 274-332 (953)
18 PLN03217 transcription factor 88.9 0.68 1.5E-05 37.5 4.2 44 170-213 19-66 (93)
19 KOG3558|consensus 77.8 3.2 6.9E-05 44.2 4.7 49 166-216 54-105 (768)
20 KOG3560|consensus 71.9 3 6.4E-05 43.6 2.6 44 173-216 40-88 (712)
21 PF01056 Myc_N: Myc amino-term 64.3 2.3 4.9E-05 41.4 0.1 24 60-84 276-300 (329)
22 PLN02705 beta-amylase 62.9 79 0.0017 33.8 10.8 41 158-198 84-124 (681)
23 KOG3559|consensus 39.7 30 0.00064 35.5 3.4 44 167-210 10-55 (598)
24 PF05687 DUF822: Plant protein 36.6 1.3E+02 0.0027 26.7 6.3 28 158-185 11-38 (150)
25 PLN02905 beta-amylase 27.9 2.3E+02 0.0049 30.7 7.5 35 158-192 86-120 (702)
No 1
>KOG4447|consensus
Probab=99.86 E-value=3.4e-22 Score=172.16 Aligned_cols=93 Identities=65% Similarity=0.921 Sum_probs=83.2
Q ss_pred CCCCchhhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCccccc
Q psy4627 148 YPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDGDGNNTEIVD 227 (270)
Q Consensus 148 ~~~s~~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~~~~~d~~~~~~~~ 227 (270)
..+..++.+.+|.-||+|||+|.++||+||..||+.||++|.+|||||+||++|..||.+|.+||..+...+
T Consensus 68 ~~~~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~s~l~~~-------- 139 (173)
T KOG4447|consen 68 SIQSLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDLELD-------- 139 (173)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccccccccc--------
Confidence 346788889999999999999999999999999999999999999999999999999999999998764322
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCcccCcc-cccccccccccCC
Q psy4627 228 QDRELFNGISPGGPNFESNNSNMKLTINNY-NMAHEKLSYAFSV 270 (270)
Q Consensus 228 ~~~~l~~g~Ss~sp~~sss~S~~~~s~C~y-~la~e~LSyafsv 270 (270)
.|+++|.| -++||+|||+|+|
T Consensus 140 ----------------------~~~~sc~yPk~~~e~Lsy~fsv 161 (173)
T KOG4447|consen 140 ----------------------PKMQSCSYPKVAHERLSYAFSV 161 (173)
T ss_pred ----------------------cccCCCCCCccchhhhcccccc
Confidence 26777887 5889999999997
No 2
>KOG3960|consensus
Probab=99.67 E-value=2.1e-16 Score=145.28 Aligned_cols=63 Identities=33% Similarity=0.564 Sum_probs=59.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCC
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGSEDG 218 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~~~~~ 218 (270)
.+||++|.+|||+|+++||+||+.|+++.-..|+++|.||||||.||+||..||.||++....
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 589999999999999999999999999999999999999999999999999999999976643
No 3
>KOG4029|consensus
Probab=99.66 E-value=1.9e-16 Score=141.24 Aligned_cols=64 Identities=48% Similarity=0.733 Sum_probs=59.9
Q ss_pred hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHhccCCCC
Q psy4627 155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPS-D-KLSKIQTLKLASRYIHFLCEILHGSEDG 218 (270)
Q Consensus 155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~-~-KLSKIetLr~Ai~YI~~L~~lL~~~~~~ 218 (270)
...+|.++|+|||+|++.||.||..||.+||+.+. + |||||+|||+||.||.+|++||+.+..+
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 36789999999999999999999999999999997 6 8999999999999999999999988754
No 4
>KOG3910|consensus
Probab=99.62 E-value=7.1e-16 Score=152.14 Aligned_cols=131 Identities=25% Similarity=0.195 Sum_probs=97.8
Q ss_pred ccccccCCCCCccccccCCcccccccccCCCC----CcCCCCCcccc-------ccccccccCCCCCCCCCCCcccccCC
Q psy4627 79 FYTEVDQNKSENIYRSENLDMYGTLVKTEKPE----EENYYMDEGDI-------MNNKRRKRSISSSSKSSSGDMKIRRK 147 (270)
Q Consensus 79 ~y~~~~~~~~~~~~~~~~~d~s~t~v~te~~~----~~~~~~d~~~~-------~~~Krrkr~~sss~~s~~~~~~~r~~ 147 (270)
.=+.|+++++|+.|+++...++++++.++++. .+++.+..... +..|+-++ ......+....
T Consensus 443 s~t~Pdl~k~~e~y~g~l~g~s~tssassik~ddke~~es~~~~~ss~~~k~qg~~~k~irt-------~sS~dedddl~ 515 (632)
T KOG3910|consen 443 SGTSPDLNKPPEGYRGGLQGQSPTSSASSIKNDDKEPDESLSRSNSSEDRKSQGKPSKRIRT-------RSSSDEDDDLN 515 (632)
T ss_pred CCCCcccCCCCCCCcccccCCCCccccceeeccccCcccccccCcchhhhhhcCCCCCCCCc-------cCCcccccccC
Confidence 44678999999999998777777666655555 44555442111 11222222 12234555666
Q ss_pred CCCCchhhHHHHhHhhHHHHHHHHHHHHHHHHH-HhhCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhccCC
Q psy4627 148 YPQTYGELHSQRILANVRERQRTQSLNEAFTSL-RKLIPALPSDK-LSKIQTLKLASRYIHFLCEILHGSE 216 (270)
Q Consensus 148 ~~~s~~~~~~rR~~aN~RER~R~~~lN~AF~~L-R~~lP~~p~~K-LSKIetLr~Ai~YI~~L~~lL~~~~ 216 (270)
+.++++.+++||++.|+|||.|+++||+||.+| |.|.-++.++| .+|+-||..|+..|..|++.+++..
T Consensus 516 peqkaeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 516 PEQKAEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 778999999999999999999999999999999 55556777787 9999999999999999999998653
No 5
>KOG3898|consensus
Probab=99.61 E-value=9.7e-16 Score=140.22 Aligned_cols=66 Identities=44% Similarity=0.574 Sum_probs=60.2
Q ss_pred hhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy4627 154 ELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHGSEDGD 219 (270)
Q Consensus 154 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~~~~~d 219 (270)
....||..+|+|||+||++||+||+.||.+||..+.. ||+||+||++|.+||..|+.++......+
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~~~ 134 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIAPL 134 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCCcc
Confidence 5578999999999999999999999999999987766 99999999999999999999998776544
No 6
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.43 E-value=4.1e-13 Score=95.18 Aligned_cols=52 Identities=42% Similarity=0.595 Sum_probs=48.4
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCCCC---CCCCCCHHHHHHHHHHHHHHHH
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIPAL---PSDKLSKIQTLKLASRYIHFLC 209 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~---p~~KLSKIetLr~Ai~YI~~L~ 209 (270)
||..+|.+||.|+..||.+|+.|+..||.. ...|++|+.||..|++||..||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 688999999999999999999999999996 3349999999999999999996
No 7
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=6.5e-12 Score=88.88 Aligned_cols=56 Identities=48% Similarity=0.745 Sum_probs=52.3
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHh
Q psy4627 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEIL 212 (270)
Q Consensus 157 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL 212 (270)
.+|..+|.+||.|+..||.+|+.|+..||..... |++|+.||..|++||..|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999998844 9999999999999999999865
No 8
>smart00353 HLH helix loop helix domain.
Probab=99.23 E-value=3.7e-11 Score=83.76 Aligned_cols=51 Identities=53% Similarity=0.804 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCC-CCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 163 NVRERQRTQSLNEAFTSLRKLIPALP-SDKLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 163 N~RER~R~~~lN~AF~~LR~~lP~~p-~~KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
|.+||+|+..||.+|+.|+..||... ..|++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999986 5599999999999999999998764
No 9
>KOG4395|consensus
Probab=99.19 E-value=2.5e-11 Score=112.13 Aligned_cols=63 Identities=43% Similarity=0.530 Sum_probs=57.9
Q ss_pred hhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhccCC
Q psy4627 154 ELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHGSE 216 (270)
Q Consensus 154 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~~~ 216 (270)
....||.++|+|||+||+.||.||+.||..||..-++ ||||-+||++|..||..|..+|....
T Consensus 170 v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~ 233 (285)
T KOG4395|consen 170 VNSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPM 233 (285)
T ss_pred HHHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCcc
Confidence 3457888999999999999999999999999999888 89999999999999999999997554
No 10
>KOG0561|consensus
Probab=98.90 E-value=2.1e-09 Score=101.78 Aligned_cols=62 Identities=40% Similarity=0.519 Sum_probs=56.6
Q ss_pred CCCchhhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy4627 149 PQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCE 210 (270)
Q Consensus 149 ~~s~~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~ 210 (270)
.+.+.+.+-||.-||--||+||+.||.+|..||..||..-++||||..||+...+||..|..
T Consensus 51 t~~D~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~ 112 (373)
T KOG0561|consen 51 TSLDPERRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEG 112 (373)
T ss_pred cccCHHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 34556667888899999999999999999999999999999999999999999999999975
No 11
>KOG1318|consensus
Probab=98.23 E-value=9.9e-06 Score=79.57 Aligned_cols=64 Identities=30% Similarity=0.353 Sum_probs=56.7
Q ss_pred CCchhhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 150 QTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD--KLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 150 ~s~~~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~--KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
...+...+||..||+=||+|+-.||....+|..+||..-.. |+.|--||+.+++||+.|++.++
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 44555667788899999999999999999999999997543 99999999999999999999887
No 12
>KOG1319|consensus
Probab=98.01 E-value=1.4e-05 Score=72.11 Aligned_cols=57 Identities=28% Similarity=0.458 Sum_probs=50.0
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC-CC----CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALP-SD----KLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 157 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p-~~----KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
.||.+|..-||+|+..||.+|+.|+..||... ++ ||||.-||..||+||.+|..-..
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~ 122 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK 122 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999964 22 99999999999999999976544
No 13
>KOG2483|consensus
Probab=97.82 E-value=4.5e-05 Score=70.08 Aligned_cols=60 Identities=27% Similarity=0.311 Sum_probs=54.0
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC-HHHHHHHHHHHHHHHHHHhccC
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLS-KIQTLKLASRYIHFLCEILHGS 215 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLS-KIetLr~Ai~YI~~L~~lL~~~ 215 (270)
...|..+|+.||+|+..|.++|+.||..||.++..|.+ -+.||+.|..||..|+......
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 46899999999999999999999999999999988766 8999999999999998766543
No 14
>KOG4447|consensus
Probab=97.05 E-value=0.00035 Score=61.32 Aligned_cols=56 Identities=34% Similarity=0.393 Sum_probs=49.9
Q ss_pred HHHhHhhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy4627 157 SQRILANVR-ERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEIL 212 (270)
Q Consensus 157 ~rR~~aN~R-ER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL 212 (270)
..|.-+|.| ||.|.+.+|+||.-|+..+|-.|.++.+|+.+|+.|..||.+|.++-
T Consensus 20 ~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 20 SEEECDRQRKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred hhhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHH
Confidence 445555556 99999999999999999999999999999999999999999998853
No 15
>KOG4304|consensus
Probab=96.27 E-value=0.0051 Score=57.07 Aligned_cols=57 Identities=23% Similarity=0.354 Sum_probs=48.6
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC------CCCCCHHHHHHHHHHHHHHHHHHh
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALP------SDKLSKIQTLKLASRYIHFLCEIL 212 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p------~~KLSKIetLr~Ai~YI~~L~~lL 212 (270)
..|+..+=.-||+|+.-||.+++.||++||..- .-||-|.+||.++++|...|+..-
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 455666778999999999999999999999852 138999999999999999998843
No 16
>KOG3561|consensus
Probab=95.54 E-value=0.022 Score=60.52 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=51.4
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC--CCCCHHHHHHHHHHHHHHHHHH
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPS--DKLSKIQTLKLASRYIHFLCEI 211 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~--~KLSKIetLr~Ai~YI~~L~~l 211 (270)
+..|..+|.-||+|+..+|.-.++|-.+||+... .|+=|..|||+|+..|+.+..+
T Consensus 18 r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 18 RKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 4558999999999999999999999999999863 5999999999999999999886
No 17
>KOG2588|consensus
Probab=95.06 E-value=0.018 Score=61.84 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=51.9
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHGS 215 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~~ 215 (270)
..+|.+||.=|++=+.+||+-..+||+.||..+ -|+.|-.+||.||+||..|+......
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~-aKl~kSavLr~ai~~i~dl~~~nq~l 332 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTE-AKLNKSAVLRKAIDYIEDLQGYNQKL 332 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccH-hhhhhhhhHHHHHHHHHHhhcccccc
Confidence 368999999999999999999999999999533 29999999999999999998765543
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=88.94 E-value=0.68 Score=37.49 Aligned_cols=44 Identities=27% Similarity=0.465 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhCCCCCC----CCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 170 TQSLNEAFTSLRKLIPALPS----DKLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 170 ~~~lN~AF~~LR~~lP~~p~----~KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
-.+||+-...|+..||.... .|.|--.+|+.+++||+.|..-++
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvD 66 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVD 66 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999643 378888999999999999988665
No 19
>KOG3558|consensus
Probab=77.81 E-value=3.2 Score=44.19 Aligned_cols=49 Identities=33% Similarity=0.575 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCC---CCCHHHHHHHHHHHHHHHHHHhccCC
Q psy4627 166 ERQRTQSLNEAFTSLRKLIPALPSD---KLSKIQTLKLASRYIHFLCEILHGSE 216 (270)
Q Consensus 166 ER~R~~~lN~AF~~LR~~lP~~p~~---KLSKIetLr~Ai~YI~~L~~lL~~~~ 216 (270)
=|.|+.+=|+-|.+|.++|| +|.. -|-|+-|+|+||.|.+ |.+++....
T Consensus 54 ARsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~~g~ 105 (768)
T KOG3558|consen 54 ARSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAGAGD 105 (768)
T ss_pred hhhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhhcCC
Confidence 36778889999999999999 5643 6999999999999876 555555433
No 20
>KOG3560|consensus
Probab=71.87 E-value=3 Score=43.60 Aligned_cols=44 Identities=34% Similarity=0.563 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCCCCC--CCCHHHHHHHHHHHHH---HHHHHhccCC
Q psy4627 173 LNEAFTSLRKLIPALPSD--KLSKIQTLKLASRYIH---FLCEILHGSE 216 (270)
Q Consensus 173 lN~AF~~LR~~lP~~p~~--KLSKIetLr~Ai~YI~---~L~~lL~~~~ 216 (270)
||.-++.|-..||+.+.- ||-|+-+||+++.|++ +.+-+|..+.
T Consensus 40 LNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~ 88 (712)
T KOG3560|consen 40 LNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSS 88 (712)
T ss_pred hhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCc
Confidence 799999999999997764 9999999999999986 5677776554
No 21
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=64.31 E-value=2.3 Score=41.37 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhhhhhh-cccccCCCCcCCcccccc
Q psy4627 60 LLILEQM-KSETAHPYLTDYFYTEVD 84 (270)
Q Consensus 60 ~~~~~~~-~~~~~~~~~~~~~y~~~~ 84 (270)
=|||..= -+=|||||||+ ||+..+
T Consensus 276 ~l~lKRchv~ihQHNYAAp-P~~~~~ 300 (329)
T PF01056_consen 276 PLILKRCHVSIHQHNYAAP-PSTRED 300 (329)
T ss_dssp --------------------------
T ss_pred CccceeeeeeeccccccCC-CCCCCc
Confidence 3444433 34469999999 998844
No 22
>PLN02705 beta-amylase
Probab=62.86 E-value=79 Score=33.80 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHH
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTL 198 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetL 198 (270)
-|.....|||+|+.---.-|..||++=-..+..+.---++|
T Consensus 84 e~e~~~~rer~rrai~~ki~aglr~~g~~~lp~~~d~n~vl 124 (681)
T PLN02705 84 EKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVL 124 (681)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcccchHHHH
Confidence 34555679999999999999999997654444433333333
No 23
>KOG3559|consensus
Probab=39.73 E-value=30 Score=35.50 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCC--CCCCHHHHHHHHHHHHHHHHH
Q psy4627 167 RQRTQSLNEAFTSLRKLIPALPS--DKLSKIQTLKLASRYIHFLCE 210 (270)
Q Consensus 167 R~R~~~lN~AF~~LR~~lP~~p~--~KLSKIetLr~Ai~YI~~L~~ 210 (270)
|+|+..=|--|-+|-+.||-... ..+-|.-|+|+|+.||.+-.-
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~v 55 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNV 55 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHh
Confidence 45677789999999999997542 259999999999999986443
No 24
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=36.61 E-value=1.3e+02 Score=26.74 Aligned_cols=28 Identities=29% Similarity=0.289 Sum_probs=22.7
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCC
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIP 185 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP 185 (270)
-|.....|||+|+.---.-|..||.+==
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455566999999999999999998754
No 25
>PLN02905 beta-amylase
Probab=27.88 E-value=2.3e+02 Score=30.67 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=26.0
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKL 192 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KL 192 (270)
-|.....|||+|+.---.-|..||++=-..+..+.
T Consensus 86 ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~ 120 (702)
T PLN02905 86 EKERTKLRERHRRAITARILAGLRRHGNYNLRVRA 120 (702)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Confidence 34446679999999999999999997654444333
Done!