Query psy4627
Match_columns 270
No_of_seqs 228 out of 783
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:39:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 3.7E-22 1.3E-26 146.1 8.4 57 158-214 2-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 1E-21 3.4E-26 147.2 8.2 59 156-214 10-68 (68)
3 2lfh_A DNA-binding protein inh 99.7 2.5E-19 8.6E-24 134.8 2.8 49 162-210 18-67 (68)
4 4aya_A DNA-binding protein inh 99.7 1.6E-18 5.6E-23 138.2 7.7 62 158-219 25-87 (97)
5 3u5v_A Protein MAX, transcript 99.6 1E-16 3.5E-21 122.2 4.5 62 156-217 3-66 (76)
6 1hlo_A Protein (transcription 99.6 1.9E-15 6.6E-20 114.8 7.6 60 155-214 9-68 (80)
7 1nkp_B MAX protein, MYC proto- 99.5 1.4E-14 4.9E-19 110.3 7.2 56 158-213 2-57 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 99.5 2.1E-14 7.2E-19 111.6 7.6 59 155-213 3-62 (88)
9 1nlw_A MAD protein, MAX dimeri 99.5 1.4E-13 4.8E-18 105.5 7.6 55 159-213 2-57 (80)
10 1am9_A Srebp-1A, protein (ster 99.3 1E-11 3.4E-16 95.1 7.9 58 156-214 4-61 (82)
11 1an4_A Protein (upstream stimu 99.2 1.6E-12 5.4E-17 94.9 1.9 55 157-211 4-62 (65)
12 4h10_B Circadian locomoter out 99.1 2.2E-10 7.4E-15 86.6 8.2 59 155-214 5-63 (71)
13 1a0a_A BHLH, protein (phosphat 99.0 1.3E-10 4.6E-15 85.3 4.7 55 158-212 2-61 (63)
14 4h10_A ARYL hydrocarbon recept 99.0 3E-10 1E-14 86.0 4.8 57 154-210 5-63 (73)
15 4ati_A MITF, microphthalmia-as 99.0 6.8E-10 2.3E-14 90.4 7.2 58 156-213 25-84 (118)
16 4f3l_A Mclock, circadian locom 98.4 4.5E-07 1.5E-11 83.1 6.8 57 156-213 10-66 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.0 3E-06 1E-10 78.7 4.4 55 156-210 11-67 (387)
18 4ath_A MITF, microphthalmia-as 97.3 0.00045 1.5E-08 53.7 6.6 42 171-212 5-48 (83)
19 3muj_A Transcription factor CO 94.2 0.072 2.5E-06 44.8 5.7 40 171-210 94-135 (138)
20 3mlp_A Transcription factor CO 75.5 0.48 1.6E-05 45.5 -0.5 41 171-211 320-362 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 35.4 27 0.00092 21.6 2.4 20 191-210 1-20 (26)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.87 E-value=3.7e-22 Score=146.13 Aligned_cols=57 Identities=51% Similarity=0.763 Sum_probs=54.6
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHG 214 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~ 214 (270)
||.+||+|||+||++||.||+.||.+||..+.+ |||||+||++|++||.+|+++|++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999866 999999999999999999999975
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.85 E-value=1e-21 Score=147.20 Aligned_cols=59 Identities=36% Similarity=0.563 Sum_probs=56.3
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG 214 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~ 214 (270)
..+|.+||+|||+||+.||+||+.||.+||..|.+|||||+||++||+||.+|+++|++
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999998877999999999999999999999874
No 3
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-19 Score=134.81 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q psy4627 162 ANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCE 210 (270)
Q Consensus 162 aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~ 210 (270)
+|+|||+||+.||.||+.||++||..|.+ |||||+||++||+||.+||.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999987 89999999999999999984
No 4
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=138.16 Aligned_cols=62 Identities=21% Similarity=0.323 Sum_probs=51.8
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhccCCCCC
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILHGSEDGD 219 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~~~~~~d 219 (270)
|+..+..+||.||+.||+||+.||++||+.|.+ |||||+|||+||+||.+|+++|++.+.+.
T Consensus 25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~ 87 (97)
T 4aya_A 25 RSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS 87 (97)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 344445677999999999999999999999877 89999999999999999999999877543
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.64 E-value=1e-16 Score=122.24 Aligned_cols=62 Identities=31% Similarity=0.355 Sum_probs=51.5
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCC-CCCCCC-CHHHHHHHHHHHHHHHHHHhccCCC
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPA-LPSDKL-SKIQTLKLASRYIHFLCEILHGSED 217 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~-~p~~KL-SKIetLr~Ai~YI~~L~~lL~~~~~ 217 (270)
.++|.++|++||+|+..||++|+.||.+||. .+.+|. ||++||+.|++||.+|++.|++-+.
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999994 677765 8999999999999999999987653
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=1.9e-15 Score=114.76 Aligned_cols=60 Identities=32% Similarity=0.506 Sum_probs=56.0
Q ss_pred hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627 155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG 214 (270)
Q Consensus 155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~ 214 (270)
...+|..||++||+|+..||.+|+.||.+||..++.|+||+.||+.|++||..|+..+..
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~ 68 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999888999999999999999999987653
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.53 E-value=1.4e-14 Score=110.31 Aligned_cols=56 Identities=34% Similarity=0.574 Sum_probs=53.1
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
+|..||.+||+|+..||.+|+.||.+||..++.|+||+.||+.|++||..|+..+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~ 57 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999888899999999999999999997654
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=2.1e-14 Score=111.64 Aligned_cols=59 Identities=36% Similarity=0.460 Sum_probs=54.4
Q ss_pred hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
...+|..||++||+|+..||.+|..||.+||.++.. |+||+.||+.|++||..|+....
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999998755 99999999999999999998654
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.4e-13 Score=105.50 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=51.4
Q ss_pred HhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 159 RILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 159 R~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~-KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
|..||+.||+|+..||.+|+.||..||..+.. |+||+.||+.|++||..|+.-..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~ 57 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999998765 99999999999999999998653
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.27 E-value=1e-11 Score=95.08 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=52.9
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG 214 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~ 214 (270)
..+|..||..||+|+..||++|..||..||. ...|++|+.||..||+||.+|+..+..
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~-~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG-TEAKLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999997 345999999999999999999987763
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.24 E-value=1.6e-12 Score=94.90 Aligned_cols=55 Identities=33% Similarity=0.352 Sum_probs=50.3
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC----CCCHHHHHHHHHHHHHHHHHH
Q psy4627 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSD----KLSKIQTLKLASRYIHFLCEI 211 (270)
Q Consensus 157 ~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~----KLSKIetLr~Ai~YI~~L~~l 211 (270)
.+|..||..||+|+..||.+|..|+.+||..... |++|+.||..|++||..|+.-
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999987753 899999999999999999863
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.11 E-value=2.2e-10 Score=86.61 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=53.0
Q ss_pred hHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q psy4627 155 LHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILHG 214 (270)
Q Consensus 155 ~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~~ 214 (270)
...+|..+|..||+|+..||..|..|+..||. ...|+.|..||+.||+||..|+..+.-
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-~~~K~dK~sIL~~aI~yik~Lq~~~~~ 63 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-NARKMDKSTVLQKSIDFLRKHKEITAW 63 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHHHHHHhhhH
Confidence 36789999999999999999999999999994 234999999999999999999997753
No 13
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.05 E-value=1.3e-10 Score=85.31 Aligned_cols=55 Identities=35% Similarity=0.318 Sum_probs=49.2
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHh
Q psy4627 158 QRILANVRERQRTQSLNEAFTSLRKLIPALP-----SDKLSKIQTLKLASRYIHFLCEIL 212 (270)
Q Consensus 158 rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p-----~~KLSKIetLr~Ai~YI~~L~~lL 212 (270)
+|..|+.-||.|+..||.+|..|+..||... ..|+||..||.+|++||.+|++.+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999652 349999999999999999998754
No 14
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.00 E-value=3e-10 Score=85.95 Aligned_cols=57 Identities=25% Similarity=0.379 Sum_probs=51.0
Q ss_pred hhHHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q psy4627 154 ELHSQRILANVRERQRTQSLNEAFTSLRKLIPALP--SDKLSKIQTLKLASRYIHFLCE 210 (270)
Q Consensus 154 ~~~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p--~~KLSKIetLr~Ai~YI~~L~~ 210 (270)
....+|..++..||+|+..||.+|..|+..||... ..|+.|..||++||+||..|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999999753 3499999999999999999875
No 15
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.99 E-value=6.8e-10 Score=90.36 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=46.8
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPS-D-KLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~-~-KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
..+|..||.-||+|+..||+.|..|+..||.... + |++|..||..||+||.+|+..+.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999998753 4 99999999999999999987665
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.38 E-value=4.5e-07 Score=83.05 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=43.7
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFLCEILH 213 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p~~KLSKIetLr~Ai~YI~~L~~lL~ 213 (270)
..+|..+|..||+|+..||..|..|+..|| ....||.|..||++|+.||+.|+.+-.
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p-~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLP-GNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCC-SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCC-CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 467888999999999999999999999999 233499999999999999999998654
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.03 E-value=3e-06 Score=78.67 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=49.4
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q psy4627 156 HSQRILANVRERQRTQSLNEAFTSLRKLIPALP--SDKLSKIQTLKLASRYIHFLCE 210 (270)
Q Consensus 156 ~~rR~~aN~RER~R~~~lN~AF~~LR~~lP~~p--~~KLSKIetLr~Ai~YI~~L~~ 210 (270)
..+|..+|.-||+|+..||..|.+|+.+||... ..||.|..||++|+.||+.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 467889999999999999999999999999754 2499999999999999999873
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.34 E-value=0.00045 Score=53.70 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCCCCC-CC-CCCHHHHHHHHHHHHHHHHHHh
Q psy4627 171 QSLNEAFTSLRKLIPALP-SD-KLSKIQTLKLASRYIHFLCEIL 212 (270)
Q Consensus 171 ~~lN~AF~~LR~~lP~~p-~~-KLSKIetLr~Ai~YI~~L~~lL 212 (270)
-.||..+.+|...||... .+ |.+|-.||+.|++||.+|++..
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~ 48 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQ 48 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHH
Confidence 469999999999999753 24 9999999999999999998743
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=94.21 E-value=0.072 Score=44.76 Aligned_cols=40 Identities=33% Similarity=0.502 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCCCCCCC--CCCHHHHHHHHHHHHHHHHH
Q psy4627 171 QSLNEAFTSLRKLIPALPSD--KLSKIQTLKLASRYIHFLCE 210 (270)
Q Consensus 171 ~~lN~AF~~LR~~lP~~p~~--KLSKIetLr~Ai~YI~~L~~ 210 (270)
-.|+-+|.+|.+.||-+|++ +|.|-.||+.|.++...|..
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~~ 135 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG 135 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHHC
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHhC
Confidence 46889999999999999987 99999999999999988753
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=75.48 E-value=0.48 Score=45.48 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCCCCCCC--CCCHHHHHHHHHHHHHHHHHH
Q psy4627 171 QSLNEAFTSLRKLIPALPSD--KLSKIQTLKLASRYIHFLCEI 211 (270)
Q Consensus 171 ~~lN~AF~~LR~~lP~~p~~--KLSKIetLr~Ai~YI~~L~~l 211 (270)
-.|.-+|..|.+.||-.|++ +|.|-.||+.|.+.+..|..+
T Consensus 320 PtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~ealy~~ 362 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGM 362 (402)
T ss_dssp CTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHHTTC
T ss_pred CccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHhcCC
Confidence 45778999999999999987 999999999999999888543
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=35.36 E-value=27 Score=21.64 Aligned_cols=20 Identities=25% Similarity=0.117 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy4627 191 KLSKIQTLKLASRYIHFLCE 210 (270)
Q Consensus 191 KLSKIetLr~Ai~YI~~L~~ 210 (270)
|+..|++|-.|.+|+....+
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46789999999999998775
Done!