RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4627
         (270 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 68

 Score = 63.0 bits (153), Expect = 8e-14
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 142 MKIRRKYPQTYGELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLA 201
           M+++RK          +R  A +RER+R   +NEAF +L++   + P+ +L K++ L+ A
Sbjct: 1   MELKRKTTNA-----DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNA 55

Query: 202 SRYIHFLCEILH 213
            RYI  L  +L 
Sbjct: 56  IRYIEGLQALLR 67


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 83

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 158 QRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           +R   N  ER+R   + ++F SLR  +P+L  +K S+ Q L  A+ YI ++
Sbjct: 2   KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYM 52


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 52.6 bits (126), Expect = 6e-10
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 153 GELHSQRILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFL 208
           G ++ +R   NV ERQR   L  +F +LR  IP L ++ K  K+  LK A+ YI  +
Sbjct: 1   GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPAL----PSDKLSKIQTLKLASRYIHFL 208
            +R   N  ER+R   +N     L K+IP           SK   L  AS YI  L
Sbjct: 4   KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 49.5 bits (118), Expect = 5e-09
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 158 QRILANVRERQRTQSLNEAFTSLRKLIPAL-----PSDKLSKIQTLKLASRYIHFLCE 210
           +R      E+ R   L  A   L  LIPA       S   SK  T++ A RYI  L +
Sbjct: 2   KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQ 59


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 159 RILANVRERQRTQSLNEAFTSLRKLIPALPSD-KLSKIQTLKLASRYIHFL 208
           R   N  E+ R   L  +   L+ L+P  P   + + +  L  A  +I  L
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKL 52


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 157 SQRILANVRERQRTQSLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
            +R   N  E++   S+N+    L+ L+    + KL+K   L+ A  YI FL
Sbjct: 5   EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA-KLNKSAVLRKAIDYIRFL 55


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 32.4 bits (74), Expect = 0.005
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 172 SLNEAFTSLRKLIPALPSDKLSKIQTLKLASRYIHFL 208
           S+N+    L+ L+      K+ K   L+ A  YI +L
Sbjct: 3   SINDKIIELKDLVMG-TDAKMHKSGVLRKAIDYIKYL 38


>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2
           {Influenza A virus [TaxId: 11320]}
          Length = 69

 Score = 24.9 bits (54), Expect = 2.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 103 LVKTEKPEEENYYMDEGDIMNNKRRKRSISSSSKSSSGDMKIR 145
           L    K E+ N  + +GD++   +RKR  S  + S +   +IR
Sbjct: 26  LSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIR 68


>g2mev.1 b.121.4.1 (4:,2:) Mengo encephalomyocarditis virus coat
           proteins {Mengovirus [TaxId: 12107]}
          Length = 307

 Score = 25.6 bits (56), Expect = 7.9
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 246 NNSNMKLTINNYNMAHEKLSYAFS 269
           +  N  + INN+     + S   S
Sbjct: 1   SEGNEGVIINNFYSNQYQNSIDLS 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.128    0.351 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 942,446
Number of extensions: 41521
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 17
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.1 bits)