BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy463
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 292 bits (747), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 206/622 (33%), Positives = 316/622 (50%), Gaps = 74/622 (11%)
Query: 110 PFDHLRFSSDGKKMLLILSHN---QESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTR 166
P +L +S G K+ + +N ++ G P +TF +++ I + +P +
Sbjct: 111 PIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF----QITFNGRENK--IFNGIPDWVYE 164
Query: 167 GRFTVTEILAWDERENNPLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLT 226
T+ W L++ + +D PV ++ + D+Q +P P
Sbjct: 165 EEMLATKYALWWSPNGK---FLAYAEFNDTDIPVIAYSYYG----DEQYPRTINIPYPKA 217
Query: 227 RGRFTVTEILAWDE--------KENNVEPVL-------SRVNWA-NESVVAAWVNRVQNR 270
+ V I D +E V ++ S + W +E V W+ RVQN
Sbjct: 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNV 277
Query: 271 ARITRCSINE--GTCDVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVD 328
+ ++ C E T D ++ +H+ S G + STPV
Sbjct: 278 SVLSICDFREDWQTWDCPKTQ----------EHIEESRTGWAGGFFV--------STPVF 319
Query: 329 SWDHLTFIDL-DDQAG------IKDKV--PVPLTRGRFTVTEILAWDEKENNVYFLSTQG 379
S+D +++ + D+ G IKD V + +T G++ I ++++++ S +
Sbjct: 320 SYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFR--VTQDSLFYSSNEF 377
Query: 380 S--PIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGATFSTNVSYYVLSCIGPGIP 437
P +++YRI+I + +C+TC L ++C Y A+FS YY L C GPGIP
Sbjct: 378 EEYPGRRNIYRISIGSYPPSKKCVTCHL---RKERCQYYTASFSDYAKYYALVCYGPGIP 434
Query: 438 EIMLFD-KTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTS 496
L D +T Q + + N++L AL NI LP E + + + K+ LPP D S
Sbjct: 435 ISTLHDGRTDQEIKILEENKELENALKNIQLPKEEIKKLEVD-EITLWYKMILPPQFDRS 493
Query: 497 GHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGY 556
KKYPLLI VYGGP S V F+V+W YLA + +V+A +DGR +A +G+ L YA Y
Sbjct: 494 --KKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVY 551
Query: 557 RRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISV 616
R+LG E+ DQI R E + +ID+ R AIWGWSYGGY + LALA + +FKCGI+V
Sbjct: 552 RKLGVYEVEDQITAVRKFIE-MGFIDEKRIAIWGWSYGGYVSSLALA-SGTGLFKCGIAV 609
Query: 617 APVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHF 676
APV+ W YY ++Y+ER+MGLPT +DNLE YK + + + + R+ YLL+HGT DDNVHF
Sbjct: 610 APVSSWEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHF 669
Query: 677 QQSMMLAKSLQHADIMFQSQRY 698
Q S +AK+L +A + FQ+ Y
Sbjct: 670 QNSAQIAKALVNAQVDFQAMWY 691
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++R+MGLPT +DNLE YK + + + + R+ YLL+HGT DDNVHFQ S +AK+L +A
Sbjct: 623 TERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNA 682
Query: 755 DIMFQSQTYPDEEHGLIGVRP-HFYHTLERFLDSCFA 790
+ FQ+ Y D+ HGL G+ H Y + FL CF+
Sbjct: 683 QVDFQAMWYSDQNHGLSGLSTNHLYTHMTHFLKQCFS 719
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 65/221 (29%)
Query: 1 MFTEEVLXXXXXXXXXXXGNNLAYASFDDNRTVIMTIPFYGNPGHPSS---QYTQAINLR 57
++ EE+L G LAYA F+D ++ +YG+ +P + Y +A +
Sbjct: 162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA-GAK 220
Query: 58 EPVL-------------------------------SRVNWA-NESVVAAWVNRVQNRARI 85
PV+ S + W +E V W+ RVQN + +
Sbjct: 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280
Query: 86 TRCSINE--GTCDVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWD 143
+ C E T D ++ +H+ S G + STPV S+D
Sbjct: 281 SICDFREDWQTWDCPKTQ----------EHIEESRTGWAGGFFV--------STPVFSYD 322
Query: 144 HLTFIDL-DDQAG------IKDKV--PVPLTRGRFTVTEIL 175
+++ + D+ G IKD V + +T G++ I
Sbjct: 323 AISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIF 363
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 276 bits (705), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 170/463 (36%), Positives = 248/463 (53%), Gaps = 40/463 (8%)
Query: 249 LSRVNWANESVVA-AWVNRVQNRARITRCSINEGTCDVVFSRDLDR------GW---FEP 298
L V W E ++ W+ R QN + I C +E T + S GW F P
Sbjct: 262 LCGVTWVTEERISLQWIRRAQNYSIIDICDYDESTGRWISSVARQHIEISTTGWVGRFRP 321
Query: 299 FDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFT 358
+ F+SDG I+S+ + + H+ D +T+G +
Sbjct: 322 AEP-HFTSDGNSFYKIISNEE---------GYKHICHFQTDKSNC------TFITKGAWE 365
Query: 359 VTEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYS 416
V I A + +Y++S + G P +++YRI + D T C++C+L ++C Y
Sbjct: 366 VIGIEAL--TSDYLYYISNEHKGMPGGRNLYRIQLNDYTKVT-CLSCEL---NPERCQYY 419
Query: 417 GATFSTNVSYYVLSCIGPGIPEIMLFDKTGQR-LLYWDTNEDLRTALTNITLPSVEYMSV 475
A+FS YY L C GPG+P L + + L + N L L ++ +PS + +
Sbjct: 420 SASFSNKAKYYQLRCFGPGLPLYTLHSSSSDKELRVLEDNSALDKMLQDVQMPSKKLDVI 479
Query: 476 PIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIV 535
+ + ++ LPP D S KKYPLLI VY GP S +V F + W YLA ++I+
Sbjct: 480 NLH-GTKFWYQMILPPHFDKS--KKYPLLIEVYAGPCSQKVDTVFRLSWATYLASTENII 536
Query: 536 VAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGG 595
VA DGR S +G+ + +A RRLGT E+ DQI TR + + ++D R AIWGWSYGG
Sbjct: 537 VASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEATRQFSK-MGFVDDKRIAIWGWSYGG 595
Query: 596 YATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKV 655
Y T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 596 YVTSMVLGAG-SGVFKCGIAVAPVSKWEYYDSVYTERYMGLPTPEDNLDYYRNSTVMSRA 654
Query: 656 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS L+K+L A + FQ+ Y
Sbjct: 655 ENFKQVEYLLIHGTADDNVHFQQSAQLSKALVDAGVDFQTMWY 697
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS L+K+L A
Sbjct: 629 TERYMGLPTPEDNLDYYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQLSKALVDA 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + FL CF+
Sbjct: 689 GVDFQTMWYTDEDHGIASNMAHQHIYTHMSHFLKQCFS 726
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 270 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 329
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 330 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 374
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 375 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 428
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 429 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 485
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 486 FIILAETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 543
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 544 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 602
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 603 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 661
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 662 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 705
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 637 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 696
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 697 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 734
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 168/464 (36%), Positives = 252/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 267 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 326
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S N+E + H+ + +D K +T+G + V
Sbjct: 327 SEPHFTLDGNSFYKIIS-NEEG--------YRHICYFQIDK------KDCTFITKGTWEV 371
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 372 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 425
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 426 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 482
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 483 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 540
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 541 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 599
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 600 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 658
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 659 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 702
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 634 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 693
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 694 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 731
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 264 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 323
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 324 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 368
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 369 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 422
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 423 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 479
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 480 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 537
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 538 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 596
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 597 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 655
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 656 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 699
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 631 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 690
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 691 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 728
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 270 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 329
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 330 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 374
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 375 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 428
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 429 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 485
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 486 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 543
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 544 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 602
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 603 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 661
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 662 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 705
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 637 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 696
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 697 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 734
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 263 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 322
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 323 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 367
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 368 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 421
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 422 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 478
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 479 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 536
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 537 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 595
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 596 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 654
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 655 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 698
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 630 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 689
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 690 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 727
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 322 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 366
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 367 IGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 420
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 477
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 478 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 594
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 595 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 653
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 654 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 689 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 322 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 366
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 367 IGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 420
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 477
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 478 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 594
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 595 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 653
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 654 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 689 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 322 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 366
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 367 IGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 420
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 477
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 478 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 594
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 595 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 653
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 654 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 689 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 322 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 366
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 367 IGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 420
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 477
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 478 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 594
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 595 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 653
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 654 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 689 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 322 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 366
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 367 IGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 420
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 477
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 478 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 594
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 595 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 653
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 654 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 689 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 265 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 324
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 325 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 369
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 370 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 423
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 424 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 480
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 481 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 538
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 539 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 597
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 598 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 656
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 657 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 700
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 632 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 691
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 692 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 729
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 268 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 327
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 328 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 372
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 373 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 426
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 427 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 483
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 484 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 541
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 542 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 600
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 601 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 659
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 660 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 703
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 635 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 694
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 695 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 732
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 270 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 329
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 330 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 374
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 375 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 428
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 429 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 485
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 486 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 543
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 544 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 602
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 603 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 661
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 662 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 705
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 637 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 696
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 697 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 734
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 265 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 324
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 325 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 369
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 370 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 423
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 424 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 480
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 481 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 538
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 539 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 597
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 598 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 656
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 657 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 700
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 632 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 691
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 692 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 729
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 272 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 331
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 332 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 376
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 377 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 430
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 431 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 487
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 488 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 545
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 546 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 604
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 605 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 663
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 664 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 707
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 639 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 698
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 699 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 736
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 274 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 333
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 334 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 378
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 379 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 432
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 433 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 489
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 490 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 547
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 548 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 606
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 607 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 665
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 666 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 709
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 641 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 700
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 701 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 738
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 273 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 332
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 333 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 377
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 378 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 431
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 432 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 488
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 489 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 546
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 547 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 605
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 606 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 664
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 665 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 708
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 640 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 699
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 700 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 737
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 300 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 359
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 360 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 404
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 405 IGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 458
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 459 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 515
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 516 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 573
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 574 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 632
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 633 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 691
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 692 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 735
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 667 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 726
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 727 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 764
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 166/464 (35%), Positives = 250/464 (53%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 322 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 366
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I + D T C++C+L ++C Y
Sbjct: 367 IGIEA--LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVT-CLSCEL---NPERCQYYS 420
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 477
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ VY GP S + F ++W YLA ++I
Sbjct: 478 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 594
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 595 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 653
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 654 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 689 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 269 bits (687), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 165/464 (35%), Positives = 251/464 (54%), Gaps = 42/464 (9%)
Query: 249 LSRVNWA-NESVVAAWVNRVQNRARITRCSINE--GTCDVVFSRD----LDRGWFEPF-- 299
L V WA E + W+ R+QN + + C +E G + + +R GW F
Sbjct: 262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
F+ DG I+S+ + + H+ + +D K +T+G + V
Sbjct: 322 SEPHFTLDGNSFYKIISNEE---------GYRHICYFQIDK------KDCTFITKGTWEV 366
Query: 360 TEILAWDEKENNVYFLSTQ--GSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSG 417
I A + +Y++S + G P +++Y+I ++D T C++C+L ++C Y
Sbjct: 367 IGIEAL--TSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVT-CLSCEL---NPERCQYYS 420
Query: 418 ATFSTNVSYYVLSCIGPGIPEIML---FDKTGQRLLYWDTNEDLRTALTNITLPSVEYMS 474
+FS YY L C GPG+P L + G R+L + N L L N+ +PS + +
Sbjct: 421 VSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL--EDNSALDKMLQNVQMPSKK-LD 477
Query: 475 VPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDI 534
I + ++ LPP D S KKYPLL+ V+ GP S + F ++W YLA ++I
Sbjct: 478 FIILNETKFWYQMILPPHFDKS--KKYPLLLDVFAGPCSQKADTVFRLNWATYLASTENI 535
Query: 535 VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYG 594
+VA DGR S +G+ + +A RRLGT E+ DQI R + + ++D R AIWGWSYG
Sbjct: 536 IVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYG 594
Query: 595 GYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNK 654
GY T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 595 GYVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 653
Query: 655 VDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L + FQ+ Y
Sbjct: 654 AENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWY 697
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L
Sbjct: 629 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 689 GVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/463 (35%), Positives = 250/463 (53%), Gaps = 37/463 (7%)
Query: 249 LSRVNWANESVVA-AWVNRVQNRARITRCSINEGT----CDVVFS--RDLDRGW---FEP 298
L V W +E ++ W+ R+QN + + C ++ T C GW F P
Sbjct: 261 LCDVAWVSEDRISLQWLRRIQNYSVMAICDYDKTTLVWNCPTTQEHIETSATGWCGRFRP 320
Query: 299 FDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFT 358
+ F+SDG I+S D + H+ D + ++V +T+G +
Sbjct: 321 AEP-HFTSDGSSFYKIVSDK---------DGYKHICQFQKDRKP---EQVCTFITKGAWE 367
Query: 359 VTEILAWDEKENNVYFLSTQGS--PIVQHMYRINIADPTATPECITCDLLTSANQKCSYS 416
V I A + +Y++S + P +++Y+I + D T +C++CDL ++C Y
Sbjct: 368 VISIEAL--TSDYLYYISNEYKEMPGGRNLYKIQLTDHT-NKKCLSCDL---NPERCQYY 421
Query: 417 GATFSTNVSYYVLSCIGPGIPEIMLFDKTGQR-LLYWDTNEDLRTALTNITLPSVEYMSV 475
+ S YY L C GPG+P L T Q+ L + N L L ++ +PS + +
Sbjct: 422 SVSLSKEAKYYQLGCRGPGLPLYTLHRSTDQKELRVLEDNSALDKMLQDVQMPSKK-LDF 480
Query: 476 PIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIV 535
+ ++ LPP D S KKYPLLI VY GP S + F ++W YLA ++I+
Sbjct: 481 IVLNETRFWYQMILPPHFDKS--KKYPLLIDVYAGPCSQKADAAFRLNWATYLASTENII 538
Query: 536 VAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGG 595
VA DGR S +G+ + +A +RLGT+E+ DQI R + + ++D R AIWGWSYGG
Sbjct: 539 VASFDGRGSGYQGDKIMHAINKRLGTLEVEDQIEAARQFLK-MGFVDSKRVAIWGWSYGG 597
Query: 596 YATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKV 655
Y T + L S VFKCGI+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++
Sbjct: 598 YVTSMVLG-SGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRA 656
Query: 656 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ + +YLL+HGT DDNVHFQQS ++K+L A + FQ+ Y
Sbjct: 657 ENFKQVEYLLIHGTADDNVHFQQSAQISKALVDAGVDFQAMWY 699
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L A
Sbjct: 631 TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDA 690
Query: 755 DIMFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
+ FQ+ Y DE+HG+ H Y + FL CF+
Sbjct: 691 GVDFQAMWYTDEDHGIASSTAHQHIYSHMSHFLQQCFS 728
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 235/463 (50%), Gaps = 33/463 (7%)
Query: 246 EPVLSRVNWANESVVAA-WVNRVQNRARITRCSINEGTCDVVFSRDLDRGWF-----EPF 299
E ++ V WA + VA W+NR QN + +T C G C D W EP
Sbjct: 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEEPV 312
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
FS DG+K I + Q G + H+T Q + +T G + V
Sbjct: 313 ----FSKDGRKFFFIRAIPQGGRGK-----FYHITVSS--SQPNSSNDNIQSITSGDWDV 361
Query: 360 TEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGAT 419
T+ILA+DEK N +YFLST+ P + +Y N +C++CDL+ + C+Y A+
Sbjct: 362 TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG-NFNRQCLSCDLV----ENCTYFSAS 416
Query: 420 FSTNVSYYVLSCIGPGIPEIMLFDKTGQRLLY-WDTNEDLRTALTNITLPSVEYMSVPIQ 478
FS ++ +++L C GPG+P + + + T ++ ++ +TNE ++ A+ + +P VEY + I
Sbjct: 417 FSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQMPKVEYRDIEID 476
Query: 479 PNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAY 538
+ +++ P + H YPLL+ V G P S V E+F V W + + VV
Sbjct: 477 -DYNLPMQILKPATFTDTTH--YPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVK 533
Query: 539 IDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYAT 598
DGR S +G L + RRLG +E DQ+ R + + YID+TR A++G YGGY +
Sbjct: 534 CDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKE-QYIDRTRVAVFGKDYGGYLS 592
Query: 599 GLALALDPSN---VFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKV 655
L N F CG +++P+TD+ Y + +SERY+GL ++ Y++ + ++V
Sbjct: 593 TYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNR--AYEMTKVAHRV 650
Query: 656 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ ++Q+L++H T D+ +HFQ + L L + Q Y
Sbjct: 651 SALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIY 693
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
S+RY+GL ++ Y++ + ++V + ++Q+L++H T D+ +HFQ + L L
Sbjct: 627 SERYLGLHGLDNR--AYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRG 684
Query: 755 DIMFQSQTYPDEEHGLI--GVRPHFYHTLERFLDSCF 789
+ Q YPDE H ++ H Y ++ F CF
Sbjct: 685 KANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECF 721
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 86/220 (39%), Gaps = 49/220 (22%)
Query: 1 MFTEEVLXXXXXXXXXXXGNNLAYASFDDNRTVIMTIPFYGNPGHPS------------- 47
++ EE+L G LAYA+ +D+R IM +P Y +P+
Sbjct: 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN 225
Query: 48 ---SQYTQAIN---------------LREPVLSRVNWANESVVAA-WVNRVQNRARITRC 88
S + +N +RE ++ V WA + VA W+NR QN + +T C
Sbjct: 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285
Query: 89 SINEGTCDVVFSRDLDRGWF-----EPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWD 143
G C D W EP FS DG+K I + Q G +
Sbjct: 286 DATTGVC-TKKHEDESEAWLHRQNEEPV----FSKDGRKFFFIRAIPQGGRG-----KFY 335
Query: 144 HLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDERENN 183
H+T Q + +T G + VT+ILA+DE+ N
Sbjct: 336 HITV--SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK 373
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 142/493 (28%), Positives = 221/493 (44%), Gaps = 63/493 (12%)
Query: 241 KENNVEPVLSRVNWAN-ESVVAAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWFEPF 299
KE ++ L+RVNW + + + +R Q + + ++ V + + W
Sbjct: 283 KEQDI--YLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSPTWVPLH 339
Query: 300 DHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTV 359
+ LRF DG + S+ + HL ID +A LT G ++V
Sbjct: 340 NSLRFLDDGSILW-----------SSERTGFQHLYRIDSKGKAAA-------LTHGNWSV 381
Query: 360 TEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGAT 419
E+LA DEK YF + S +Y + + P+ ++ + A+
Sbjct: 382 DELLAVDEKAGLAYFRAGIESARESQIYAVPLQG--GQPQRLS--------KAPGMHSAS 431
Query: 420 FSTNVSYYVLSCIGPGIP-EIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSV--P 476
F+ N S YV S P +I LF G+++ N+ L + P Y P
Sbjct: 432 FARNASVYVDSWSNNSTPPQIELFRANGEKIATLVEND-----LADPKHPYARYREAQRP 486
Query: 477 IQ--------PNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTE----RFSVDW 524
++ + P G D + K+YP+ ++VYGGP+S VT+ R +
Sbjct: 487 VEFGTLTAADGKTPLNYSVIKPAGFDPA--KRYPVAVYVYGGPASQTVTDSWPGRGDHLF 544
Query: 525 NLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKT 584
N YLA + VV +D R + +G A Y + GTVE+ DQ+ +L++ P++D
Sbjct: 545 NQYLA-QQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQ-PWVDPA 602
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLE 644
R + GWS GGY T + LA S+ + CG++ APVTDW YD+ Y+ERYM LP D
Sbjct: 603 RIGVQGWSNGGYMTLMLLA-KASDSYACGVAGAPVTDWGLYDSHYTERYMDLPARND--A 659
Query: 645 GYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLP-- 702
GY+ A + ++ +R LL+HG DDNV F S L +LQ F+ Y G
Sbjct: 660 GYREARVLTHIEGLRSP-LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHG 718
Query: 703 -TFEDNLEGYKIA 714
+ D L Y++A
Sbjct: 719 LSGADALHRYRVA 731
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 695 SQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 754
++RYM LP D GY+ A + ++ +R LL+HG DDNV F S L +LQ
Sbjct: 647 TERYMDLPARND--AGYREARVLTHIEGLRSP-LLLIHGMADDNVLFTNSTSLMSALQKR 703
Query: 755 DIMFQSQTYPDEEHGLIGVRP-HFYHTLERFLDSCF 789
F+ TYP +HGL G H Y E FL C
Sbjct: 704 GQPFELMTYPGAKHGLSGADALHRYRVAEAFLGRCL 739
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 133/472 (28%), Positives = 214/472 (45%), Gaps = 47/472 (9%)
Query: 246 EPVLSRVNWA-NESVV-AAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWFEPFDHLR 303
E L+ ++W+ +E+++ A VNR QN ++ G + D+ + EP L
Sbjct: 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316
Query: 304 FSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEIL 363
F + S D W+HL D ++ +T+G + VT
Sbjct: 317 FLPGSNNQFIWQSRR---------DGWNHLYLYD------TTGRLIRQVTKGEWEVTNFA 361
Query: 364 AWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGATFSTN 423
+D K +YF ST+ SP+ +H Y I+I T DL + + S +
Sbjct: 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK------TKDLTPESGMHRT----QLSPD 411
Query: 424 VSYYVLSCIGPGIPEIMLFDKTGQ--RLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNM 481
S + P +P + G+ L N D A+ I ++ M+ Q +
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIRTGTI--MAADGQTPL 469
Query: 482 EAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTE--RFSVD-WNLYLADNKDIVVAY 538
KL +P D + KKYP++++VYGGP + VT+ R SV W++Y+A K V
Sbjct: 470 --YYKLTMPLHFDPA--KKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA-QKGYAVFT 524
Query: 539 IDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYAT 598
+D R SA +G + +RRLG E+ DQ+ +L+ ++D R + GWSYGG+ T
Sbjct: 525 VDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQ-SWVDADRIGVHGWSYGGFMT 583
Query: 599 GLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRI 658
L L +VFK G++ PV DW Y+ +Y ERY P ++N EGY A L + +
Sbjct: 584 -TNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAP--QENPEGYDAANLLKRAGDL 640
Query: 659 RDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFEDNLEG 710
+ + +L+HG +D V +Q S++ + A Y P+ E N+ G
Sbjct: 641 KGR-LMLIHGAIDPVVVWQHSLLFLDACVKARTY---PDYYVYPSHEHNVMG 688
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 690 DIMFQSQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAK 749
+IM+ +RY P ++N EGY A L + ++ + +L+HG +D V +Q S++
Sbjct: 610 EIMY-GERYFDAP--QENPEGYDAANLLKRAGDLKGR-LMLIHGAIDPVVVWQHSLLFLD 665
Query: 750 SLQHADIMFQSQTYPDEEHGLIGV-RPHFYHTLERFL 785
+ A YP EH ++G R H Y T+ R+
Sbjct: 666 ACVKARTYPDYYVYPSHEHNVMGPDRVHLYETITRYF 702
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 28/156 (17%)
Query: 38 PFYGNPGH-----------PSSQYTQAINLREPVLSRVNWA-NESVV-AAWVNRVQNRAR 84
P G P H + Y Q +E L+ ++W+ +E+++ A VNR QN +
Sbjct: 226 PMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285
Query: 85 ITRCSINEGTCDVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDH 144
+ G + D+ + EP L F + S D W+H
Sbjct: 286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR---------DGWNH 336
Query: 145 LTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDER 180
L D ++ +T+G + VT +D +
Sbjct: 337 LYLYD------TTGRLIRQVTKGEWEVTNFAGFDPK 366
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 132/472 (27%), Positives = 214/472 (45%), Gaps = 47/472 (9%)
Query: 246 EPVLSRVNWA-NESVV-AAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWFEPFDHLR 303
E L+ ++W+ +E+++ A VNR QN ++ G + D+ + EP L
Sbjct: 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316
Query: 304 FSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEIL 363
F + S D W+HL D ++ +T+G + VT
Sbjct: 317 FLPGSNNQFIWQSRR---------DGWNHLYLYD------TTGRLIRQVTKGEWEVTNFA 361
Query: 364 AWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGATFSTN 423
+D K +YF ST+ SP+ +H Y I+I T DL + + S +
Sbjct: 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK------TKDLTPESGMHRT----QLSPD 411
Query: 424 VSYYVLSCIGPGIPEIMLFDKTGQ--RLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNM 481
S + P +P + G+ L N D A+ I ++ M+ Q +
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIRTGTI--MAADGQTPL 469
Query: 482 EAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTE--RFSVD-WNLYLADNKDIVVAY 538
KL +P D + KKYP++++VYGGP + VT+ R SV W++Y+A K V
Sbjct: 470 --YYKLTMPLHFDPA--KKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA-QKGYAVFT 524
Query: 539 IDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYAT 598
+D R SA +G + +RRLG E+ DQ+ +L+ ++D R + GW+YGG+ T
Sbjct: 525 VDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQ-SWVDADRIGVHGWAYGGFMT 583
Query: 599 GLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRI 658
L L +VFK G++ PV DW Y+ +Y ERY P ++N EGY A L + +
Sbjct: 584 -TNLMLTHGDVFKVGVAGGPVIDWNRYEIMYGERYFDAP--QENPEGYDAANLLKRAGDL 640
Query: 659 RDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFEDNLEG 710
+ + +L+HG +D V +Q S++ + A Y P+ E N+ G
Sbjct: 641 KGR-LMLIHGAIDPVVVWQHSLLFLDACVKARTY---PDYYVYPSHEHNVMG 688
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 690 DIMFQSQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAK 749
+IM+ +RY P ++N EGY A L + ++ + +L+HG +D V +Q S++
Sbjct: 610 EIMY-GERYFDAP--QENPEGYDAANLLKRAGDLKGR-LMLIHGAIDPVVVWQHSLLFLD 665
Query: 750 SLQHADIMFQSQTYPDEEHGLIGV-RPHFYHTLERFL 785
+ A YP EH ++G R H Y T+ R+
Sbjct: 666 ACVKARTYPDYYVYPSHEHNVMGPDRVHLYETITRYF 702
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 28/156 (17%)
Query: 38 PFYGNPGH-----------PSSQYTQAINLREPVLSRVNWA-NESVV-AAWVNRVQNRAR 84
P G P H + Y Q +E L+ ++W+ +E+++ A VNR QN +
Sbjct: 226 PMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285
Query: 85 ITRCSINEGTCDVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDH 144
+ G + D+ + EP L F + S D W+H
Sbjct: 286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR---------DGWNH 336
Query: 145 LTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDER 180
L D ++ +T+G + VT +D +
Sbjct: 337 LYLYD------TTGRLIRQVTKGEWEVTNFAGFDPK 366
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 133/472 (28%), Positives = 213/472 (45%), Gaps = 47/472 (9%)
Query: 246 EPVLSRVNWA-NESVV-AAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWFEPFDHLR 303
E L+ ++W+ +E+++ A VNR QN ++ G + D+ + EP L
Sbjct: 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316
Query: 304 FSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEIL 363
F + S D W+HL D ++ +T+G + VT
Sbjct: 317 FLPGSNNQFIWQSRR---------DGWNHLYLYD------TTGRLIRQVTKGEWEVTNFA 361
Query: 364 AWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGATFSTN 423
+D K +YF ST+ SP+ +H Y I+I T DL + + S +
Sbjct: 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK------TKDLTPESGMHRT----QLSPD 411
Query: 424 VSYYVLSCIGPGIPEIMLFDKTGQ--RLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNM 481
S + P +P + G+ L N D A+ I ++ M+ Q +
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNPDTGYAMPEIRTGTI--MAADGQTPL 469
Query: 482 EAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTE--RFSVD-WNLYLADNKDIVVAY 538
KL +P D + KKYP++++VYGGP + VT+ R SV W++Y+A K V
Sbjct: 470 --YYKLTMPLHFDPA--KKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMA-QKGYAVFT 524
Query: 539 IDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYAT 598
+D R SA +G + +RRLG E+ DQ+ +L+ ++D R + GWSYGG+ T
Sbjct: 525 VDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQ-SWVDADRIGVHGWSYGGFMT 583
Query: 599 GLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRI 658
L L +VFK G++ PV DW Y +Y ERY P ++N EGY A L + +
Sbjct: 584 -TNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYFDAP--QENPEGYDAANLLKRAGDL 640
Query: 659 RDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFEDNLEG 710
+ + +L+HG +D V +Q S++ + A Y P+ E N+ G
Sbjct: 641 KGR-LMLIHGAIDPVVVWQHSLLFLDACVKARTY---PDYYVYPSHEHNVMG 688
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 691 IMFQSQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKS 750
IM+ +RY P ++N EGY A L + ++ + +L+HG +D V +Q S++ +
Sbjct: 611 IMY-GERYFDAP--QENPEGYDAANLLKRAGDLKGR-LMLIHGAIDPVVVWQHSLLFLDA 666
Query: 751 LQHADIMFQSQTYPDEEHGLIGV-RPHFYHTLERFL 785
A YP EH ++G R H Y T+ R+
Sbjct: 667 CVKARTYPDYYVYPSHEHNVMGPDRVHLYETITRYF 702
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 28/156 (17%)
Query: 38 PFYGNPGH-----------PSSQYTQAINLREPVLSRVNWA-NESVV-AAWVNRVQNRAR 84
P G P H + Y Q +E L+ ++W+ +E+++ A VNR QN +
Sbjct: 226 PMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECK 285
Query: 85 ITRCSINEGTCDVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDH 144
+ G + D+ + EP L F + S D W+H
Sbjct: 286 VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR---------DGWNH 336
Query: 145 LTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDER 180
L D ++ +T+G + VT +D +
Sbjct: 337 LYLYD------TTGRLIRQVTKGEWEVTNFAGFDPK 366
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 588 IWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYK 647
I G+SYGGY T AL + P +FK G++ A V DW + +Y F + L G
Sbjct: 441 IMGYSYGGYMTLCALTMKP-GLFKAGVAGASVVDW---EEMYELSDAAFRNFIEQLTGGS 496
Query: 648 IAALN-----NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQ 696
+ N VDRI++ L+H D + + L L F++
Sbjct: 497 REIMRSRSPINHVDRIKEP-LALIHPQNDSRTPLKPLLRLMGELLARGKTFEAH 549
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 588 IWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYK 647
I G+SYGGY T AL + P +FK G++ A V DW + +Y F + L G
Sbjct: 441 IMGYSYGGYMTLCALTMKP-GLFKAGVAGASVVDW---EEMYELSDAAFRNFIEQLTGGS 496
Query: 648 IAALN-----NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQ 696
+ N VDRI++ L+H D + + L L F++
Sbjct: 497 REIMRSRSPINHVDRIKEP-LALIHPQNDSRTPLKPLLRLMGELLARGKTFEAH 549
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 588 IWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYK 647
I G+SYGGY T AL + P +FK G++ A V DW + +Y F + L G
Sbjct: 421 IMGYSYGGYMTLCALTMKP-GLFKAGVAGASVVDW---EEMYELSDAAFRNFIEQLTGGS 476
Query: 648 IAALN-----NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQ 696
+ N VDRI++ L+H D + + L L F++
Sbjct: 477 REIMRSRSPINHVDRIKEP-LALIHPQNDSRTPLKPLLRLMGELLARGKTFEAH 529
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
Query: 588 IWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYK 647
I G++YGGY T AL + P +FK G++ A V DW + +Y F + L G
Sbjct: 441 IMGYAYGGYMTLCALTMKP-GLFKAGVAGASVVDW---EEMYELSDAAFRNFIEQLTGGS 496
Query: 648 IAALN-----NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQ 696
+ N VDRI++ L+H D + + L L F++
Sbjct: 497 REIMRSRSPINHVDRIKEP-LALIHPQNDSRTPLKPLLRLMGELLARGKTFEAH 549
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 588 IWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYK 647
I G+SYGGY T AL + P +FK G++ A V DW + +Y F + L G
Sbjct: 441 IMGYSYGGYMTLCALTMKP-GLFKAGVAGASVVDW---EEMYELSDAAFRNFIEQLTGGS 496
Query: 648 IAALN-----NKVDRIRDKQYLL 665
+ N VDRI++ L+
Sbjct: 497 REIMRSRSPINHVDRIKEPLALI 519
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 588 IWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYK 647
I G+SYGGY T AL + P +FK G++ A V DW + +Y F + L G
Sbjct: 441 IMGYSYGGYMTLCALTMKP-GLFKAGVAGASVVDW---EEMYELSDAAFRNFIEQLTGGS 496
Query: 648 IAALN-----NKVDRIRDKQYLL 665
+ N VDRI++ L+
Sbjct: 497 REIMRSRSPINHVDRIKEPLALI 519
>pdb|2OGT|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.8
Length = 498
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 499 KKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALK----GNTLKYA 554
KK P+L ++GG F D + A + D+VV I+ R + G++ A
Sbjct: 97 KKRPVLFWIHGGAFLFGSGSSPWYDGTAF-AKHGDVVVVTINYRMNVFGFLHLGDSFGEA 155
Query: 555 GYRRLGTVEIYDQINVTRYLQENLPYI--DKTRTAIWGWSYGGYATGLALAL-DPSNVFK 611
Y + G + I DQ+ R+++EN+ D I+G S G + G+ L+L + S +F+
Sbjct: 156 -YAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFR 214
>pdb|2OGS|A Chain A, Crystal Structure Of The Geobacillus Stearothermophilus
Carboxylesterase Est55 At Ph 6.2
Length = 498
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 499 KKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALK----GNTLKYA 554
KK P+L ++GG F D + A + D+VV I+ R + G++ A
Sbjct: 97 KKRPVLFWIHGGAFLFGSGSSPWYDGTAF-AKHGDVVVVTINYRMNVFGFLHLGDSFGEA 155
Query: 555 GYRRLGTVEIYDQINVTRYLQENLPYI--DKTRTAIWGWSYGGYATGLALAL-DPSNVFK 611
Y + G + I DQ+ R+++EN+ D I+G S G + G+ L+L + S +F+
Sbjct: 156 -YAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFR 214
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 712 KIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLI 771
KIAA + V+ K ++V G +D ++H Q+ +L + Q YP+E
Sbjct: 53 KIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGAYGEQLLPWLQKSIYPEEIK--Y 110
Query: 772 GVRPHFYHTLERFLDSCFA 790
R + ++RFLD+ A
Sbjct: 111 KDRNYAREGVKRFLDALLA 129
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 551 LKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVF 610
+ Y G + G Y ++T+Y + +++T T I G +YGG LA +D SN
Sbjct: 194 VDYGGLQLQGGFLKYVNSDLTKYANSDWRLMNRTATNIDGKNYGGAEFLLANDIDNSNP- 252
Query: 611 KCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNN 653
+ A +W+YY + P E N +G ++ A++N
Sbjct: 253 ---VVQAEELNWLYYLMNFGTITGNNP--EANFDGIRVNAVDN 290
>pdb|3MVE|A Chain A, Crystal Structure Of A Novel Pyruvate Decarboxylase
pdb|3MVE|B Chain B, Crystal Structure Of A Novel Pyruvate Decarboxylase
Length = 415
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 577 NLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTD 621
++PY+D R + G+ +GG A L+ + C I AP+ D
Sbjct: 257 SIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHD 301
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Query: 565 YDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGL 600
YDQ+ +LPY+D A+ G SYGGY + L
Sbjct: 89 YDQL-------ASLPYVDAHSIAVVGLSYGGYLSAL 117
>pdb|3OUR|A Chain A, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|C Chain C, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|E Chain E, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|G Chain G, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
Length = 435
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 577 NLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTD 621
++PY+D R + G+ +GG A L+ + C I AP+ D
Sbjct: 277 SIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHD 321
>pdb|3BL8|A Chain A, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|B Chain B, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|C Chain C, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
pdb|3BL8|D Chain D, Crystal Structure Of The Extracellular Domain Of
Neuroligin 2a From Mouse
Length = 580
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 490 PPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGN 549
PP D K P+++ ++GG F LA +++V ++ R L
Sbjct: 127 PPDTDIRDSGKKPVMLFLHGGSYMEGTGNMFD---GSVLAAYGNVIVVTLNYRLGVL--G 181
Query: 550 TLKYAGYRRLGTVEIYDQINVTRYLQENLPYI--DKTRTAIWGWSYGGYATGLAL 602
L G + DQI R+L EN+ + D R I+G G L +
Sbjct: 182 FLSTGDQAAKGNYGLLDQIQALRWLSENIAHFGGDPERITIFGSGAGASCVNLLI 236
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
Length = 274
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 37 IPFYGNPGHPSSQYTQAINLREPVLSRVNWANESVVAAWVNRVQNRARI 85
+P H + Y +A NLR PV V +E + AAW+ Q + RI
Sbjct: 188 LPLVATTPHAEALYWEA-NLRPPVAIAVGPEHEGLRAAWLEAAQTQVRI 235
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 551 LKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVF 610
+ Y G + G Y ++T+Y + +++T T I G +YGG LA +D SN
Sbjct: 194 VDYGGLQLQGGFLKYVNSDLTKYANSDWRLMNRTATNIDGKNYGGAEFLLANDIDNSNP- 252
Query: 611 KCGISVAPVTDWIYY 625
+ A +W+YY
Sbjct: 253 ---VVQAEELNWLYY 264
>pdb|1XFJ|A Chain A, Crystal Structure Of Protein Cc_0490 From Caulobacter
Crescentus, Pfam Duf152
Length = 261
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 544 SALKGNTLKYAGYRRLGTVE--IYDQINVTRYLQENLPYIDKTRTAIWGWSYGG 595
S+L G +K+A + R G V IYD +NV R Q+ +++ R I W GG
Sbjct: 15 SSLPG--VKHAFFTRQGGVSKGIYDSLNVGRGSQDEPADVEENRARIARWFGGG 66
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 161 PVPLTRGRFTVTEILAWDERENNPLLILSHNQESDGSTPVDSWDHLTFIDLDDQ 214
PVP R + +++ W E + + +S S PVDSWD F+ +D +
Sbjct: 53 PVPNVRSS-VLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDR-EFLKVDQE 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,961,830
Number of Sequences: 62578
Number of extensions: 1105844
Number of successful extensions: 3507
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3231
Number of HSP's gapped (non-prelim): 174
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)