RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy463
(790 letters)
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 185 bits (471), Expect = 6e-54
Identities = 70/217 (32%), Positives = 97/217 (44%), Gaps = 14/217 (6%)
Query: 520 FSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLP 579
S WNL L ++ VVA +GR S G AG LG E D I YL
Sbjct: 1 PSFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQ-G 59
Query: 580 YIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTI---YSERYMGL 636
Y+D R AIWG SYGGY TG AL P ++FK ++V PV DW+ Y + ++ERYM
Sbjct: 60 YVDPDRLAIWGGSYGGYLTGAALNQRP-DLFKAAVAVVPVVDWLTYMSDTSPFTERYMEW 118
Query: 637 PTFEDNLEGYK-IAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQS 695
DN EGY+ ++ + + LL+HG DD V +++ L +LQ
Sbjct: 119 GNPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQAKGKNVLL 178
Query: 696 QRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVH 732
+ EG+ NK + + L+
Sbjct: 179 LIFPD--------EGHGGGKPRNKREEYARELAFLLK 207
Score = 82.3 bits (204), Expect = 1e-17
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 697 RYMGLPTFEDNLEGYK-IAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD 755
RYM DN EGY+ ++ + + LL+HG DD V +++ L +LQ
Sbjct: 114 RYMEWGNPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQAKG 173
Query: 756 IMFQSQTYPDEEHGLI--GVRPHFYHTLERFLDSCF 789
+PDE HG + Y FL
Sbjct: 174 KNVLLLIFPDEGHGGGKPRNKREEYARELAFLLKVL 209
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 160 bits (406), Expect = 3e-41
Identities = 97/434 (22%), Positives = 156/434 (35%), Gaps = 58/434 (13%)
Query: 302 LRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTF-----IDLDDQAGIKDKVPVPLTRGR 356
L F +DGK + +L ESD + L +D D +G + + G
Sbjct: 221 LAFDADGK-SIALLGT--ESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGL 277
Query: 357 FTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYS 416
+ + F++T G + D S +
Sbjct: 278 -----------DGDGLLFIATDGG---GSSPLFRVDDLG------GGVEGLSGD-DGGVP 316
Query: 417 GATFSTNVSYYVLSCIGPGIP-EIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSV 475
G S P P EI L+D+ + + L + L E ++
Sbjct: 317 GFDVDGRKLALAYS--SPTEPPEIYLYDRGEEA----KLTSSNNSGLKKVKLAEPEPVTY 370
Query: 476 PIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIV 535
L+ PPG D KKYPL+++++GGPS+ +S + + + +
Sbjct: 371 KSNDGETIHGWLYKPPGFDPR--KKYPLIVYIHGGPSAQ---VGYSFNPEIQVLASAGYA 425
Query: 536 VAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGG 595
V + R S G A G V++ D I L + LP +D R I G SYGG
Sbjct: 426 VLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVK-LPLVDPERIGITGGSYGG 484
Query: 596 YATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLP-----TFEDNLEGYKIAA 650
Y T LA P FK ++VA DW+ Y +E P ++ E Y+ +
Sbjct: 485 YMTLLAATKTP--RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYEDRS 542
Query: 651 LNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFEDNLEG 710
D I+ LL+HG DD V +Q+ L +L+ + + EG
Sbjct: 543 PIFYADNIKTPL-LLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPD--------EG 593
Query: 711 YKIAALNNKVDRIR 724
+ + N+V ++
Sbjct: 594 HGFSRPENRVKVLK 607
>gnl|CDD|216201 pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal
region. This family is an alignment of the region to
the N-terminal side of the active site. The Prosite
motif does not correspond to this Pfam entry.
Length = 348
Score = 134 bits (339), Expect = 2e-34
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 28/208 (13%)
Query: 231 TVTEILAWDEKENNVEPVLSRVNWA-NESVVAAWVNRVQNRARITRCSINEGTCDVVFSR 289
E++ D+ + + ++RV W +E ++ W+NR QN + G V+
Sbjct: 167 KTVELVPPDDLSDA-DYYITRVKWTPDEKLLVQWLNRDQNVLDLVLVDTETGRTVVLL-E 224
Query: 290 DLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVP 349
+ GW E F DG L I D + HL DLD K+P
Sbjct: 225 ETSDGWVELHQDPVFLRDGSGFLWISER----------DGYKHLYLYDLDG------KLP 268
Query: 350 VPLTRGRFTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSA 409
LT G + VT IL DEK + VYF +T+ SP +H+YR+++ P+ +T +
Sbjct: 269 RQLTSGNWEVTSILGVDEKRDLVYFTATEDSPGERHLYRVSLD--GGEPQRLTDESGDHR 326
Query: 410 NQKCSYSGATFSTNVSYYVLSCIGPGIP 437
+ A+FS N YYVL+ GP P
Sbjct: 327 S-------ASFSPNGKYYVLTYSGPDTP 347
Score = 115 bits (290), Expect = 7e-28
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 48/210 (22%)
Query: 4 EEVLSSSSALWFSPSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQ---YTQA------- 53
EEV S+SA W+SP G+ LA+ FD++ I+T+P Y + G + Y +A
Sbjct: 97 EEVFGSNSAYWWSPDGSRLAFLRFDESEVPIITLPDYTDDGPAEVRSIKYPKAGAPNPTV 156
Query: 54 ----INL----------------REPVLSRVNWA-NESVVAAWVNRVQNRARITRCSINE 92
+L + ++RV W +E ++ W+NR QN +
Sbjct: 157 KLFVYDLASGKTVELVPPDDLSDADYYITRVKWTPDEKLLVQWLNRDQNVLDLVLVDTET 216
Query: 93 GTCDVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDD 152
G V+ + GW E F DG L I D + HL DLD
Sbjct: 217 GRTVVLL-EETSDGWVELHQDPVFLRDGSGFLWISER----------DGYKHLYLYDLD- 264
Query: 153 QAGIKDKVPVPLTRGRFTVTEILAWDEREN 182
K+P LT G + VT IL DE+ +
Sbjct: 265 -----GKLPRQLTSGNWEVTSILGVDEKRD 289
>gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 406
Score = 38.9 bits (91), Expect = 0.010
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 148 IDLDDQAGIKDKVPVPLTRGRFTVTEILA-WDERENNPLLILSHNQESDGSTP-----VD 201
I + G+ V G+F+ EI A + + +H +DG
Sbjct: 196 IKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGADGIKLAIRLGAK 255
Query: 202 SWDHLTFIDLDDQAGIKDK-----VPVPLTRGRFTVTE 234
S +H T +D + A + +K VPV L R +F + E
Sbjct: 256 SAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRE 293
Score = 29.3 bits (66), Expect = 9.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 139 VDSWDHLTFIDLDDQAGIKDK-----VPVPLTRGRFTVTE 173
S +H T +D + A + +K VPV L R +F + E
Sbjct: 254 AKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRE 293
Score = 29.3 bits (66), Expect = 9.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 327 VDSWDHLTFIDLDDQAGIKDK-----VPVPLTRGRFTVTE 361
S +H T +D + A + +K VPV L R +F + E
Sbjct: 254 AKSAEHGTLLDHETAALLAEKGAGTPVPVLLPRTKFELRE 293
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 38.2 bits (89), Expect = 0.015
Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 495 TSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLY-LADNKDIVVAYIDGRNSALKGNTLKY 553
+K P++++++GG + + ++ LA D+VV ++ R AL +
Sbjct: 88 EVPAEKLPVMVYIHGG--GYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALG-----F 140
Query: 554 AGYRRLGTVE-------IYDQINVTRYLQENLPYI--DKTRTAIWGWSYGGYATGLALAL 604
L T + + DQI +++++N+ D ++G S G + LA+
Sbjct: 141 LDLSSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV 200
Query: 605 D 605
Sbjct: 201 P 201
>gnl|CDD|223999 COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General
function prediction only].
Length = 299
Score = 37.0 bits (85), Expect = 0.028
Identities = 37/231 (16%), Positives = 70/231 (30%), Gaps = 34/231 (14%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERF------------------SVDWNLYL 528
L LPP + KK P ++ ++G SS + + + +
Sbjct: 37 LHLPPSGN--EEKKLPAVVFLHGFGSSKEQSLGYAVLLAEKGYRVLAGDASLFGESGGDP 94
Query: 529 ADNKDIVVAYIDGRNSALKGNTLKY----------AGYRRLGTVEIYDQINVTRYLQENL 578
D D + L + + R+ + L
Sbjct: 95 RGLADSEGYAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGP 154
Query: 579 PYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPT 638
+D +R +WG S GG L L +P + I +T + E +
Sbjct: 155 TRLDASRIVVWGESLGGALALLLLGANPEL-ARELIDYL-ITPGGFAPLPAPEAPLDTLP 212
Query: 639 FEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 689
+ + ++I + LLVHG D+ V + + L ++ +
Sbjct: 213 --LRAVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER 261
>gnl|CDD|225256 COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic
ion transport and metabolism].
Length = 299
Score = 37.0 bits (86), Expect = 0.033
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 575 QENLPYIDKT--------RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDW 622
QE LPY+++ + G S GG + A P F +S + W
Sbjct: 160 QELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHP-ERFGHVLSQSGSFWW 214
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 35.9 bits (83), Expect = 0.040
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 578 LPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVT----DWIYYDTIYSERY 633
L + + G S GG A A P V + ++P + + D
Sbjct: 59 LDALGLGPVVLVGHSLGGAVALAAAARRPERV-AGLVLISPPLRDLEELLAADAAALLAL 117
Query: 634 MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 691
+ + +L +A L V L++HG D V + + LA++L A++
Sbjct: 118 LRAALLDADLREA-LARLTVPV--------LVIHGEDDPLVPPEAARRLAEALPGAEL 166
>gnl|CDD|216102 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 245
Score = 34.7 bits (80), Expect = 0.11
Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 14/112 (12%)
Query: 575 QENLPYIDKTR------TAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTI 628
QE P +D A+ G S GG L LAL ++F S +P+
Sbjct: 94 QELPPLLDANFPTAPDGRALAGQSMGGLGA-LYLALKYPDLFGSVSSFSPI-------LN 145
Query: 629 YSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSM 680
S G EG + + L GT +D + Q +
Sbjct: 146 PSNSMWGPEDDPAWQEGDPVLLAVALSANNTRLRIYLDVGTREDFLGDQLPV 197
>gnl|CDD|216890 pfam02129, Peptidase_S15, X-Pro dipeptidyl-peptidase (S15 family).
Length = 265
Score = 34.2 bits (79), Expect = 0.18
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 28/162 (17%)
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLE 644
+ + G SY G T LA A K + ++D YD Y R G L
Sbjct: 96 KVGMTGISYLGT-TQLAAAATGPPGLKAIAPESAISDL--YDHYY--REGGAVRAPGGLG 150
Query: 645 GYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTF 704
+ L + R D+ ++ ++ P F
Sbjct: 151 WEDLDLLAEALTSRR-----------ADDGDALRARARYEAAGD----ELLAELDRAPPF 195
Query: 705 E-------DNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNV 739
D ++ D+++ LLV G D NV
Sbjct: 196 LSWLLQTGDYDAFWQDRNYLEDADKVK-APVLLVGGWYDWNV 236
>gnl|CDD|202693 pfam03583, LIP, Secretory lipase. These lipases are expressed and
secreted during the infection cycle of these pathogens.
In particular, C. albicans has a large number of
different lipases, possibly reflecting broad lipolytic
activity, which may contribute to the persistence and
virulence of C. albicans in human tissue.
Length = 291
Score = 34.3 bits (79), Expect = 0.19
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 584 TRTAIWGWSYGGYATGLALALDPS 607
+ A+WG+S GG A+G A L PS
Sbjct: 71 AKVALWGYSGGGLASGWAAELQPS 94
>gnl|CDD|226040 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 312
Score = 34.0 bits (78), Expect = 0.25
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGR---- 542
L++PPG+ + PL++ ++G S + W+ LAD + +VAY DG
Sbjct: 51 LYVPPGLPSGA----PLVVVLHGSGGSGAGQLHGT-GWD-ALADREGFLVAYPDGYDRAW 104
Query: 543 NSALKGNTLKYAGYRR-LGTVEIYDQINVTRYLQENLPY-IDKTRTAIWGWSYGGYATGL 600
N+ GN A RR + V + V + + E Y ID R + G S GG
Sbjct: 105 NANGCGNWFGPADRRRGVDDVGFLRAL-VAKLVNE---YGIDPARVYVTGLSNGG-RMAN 159
Query: 601 ALALDPSNVFKCGISVA 617
LA + ++F VA
Sbjct: 160 RLACEYPDIFAAIAPVA 176
>gnl|CDD|215031 PLN00020, PLN00020, ribulose bisphosphate carboxylase/oxygenase
activase -RuBisCO activase (RCA); Provisional.
Length = 413
Score = 34.3 bits (79), Expect = 0.26
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 654 KVDRIRDKQYLLVHGT-MDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFEDNLEGYK 712
I Y + G M D++ FQ L +DI +F++ + GY
Sbjct: 67 LAQDISGDDYDITRGKGMVDSL-FQGPFGLGT---DSDIASSYDYLQRTRSFDNLVGGYY 122
Query: 713 IAALNNKVDRIRDKQYLLVH 732
IA DK + VH
Sbjct: 123 IA------PAFMDK--VAVH 134
>gnl|CDD|217536 pfam03403, PAF-AH_p_II, Platelet-activating factor acetylhydrolase,
isoform II. Platelet-activating factor acetylhydrolase
(PAF-AH) is a subfamily of phospholipases A2,
responsible for inactivation of platelet-activating
factor through cleavage of an acetyl group. Three known
PAF-AHs are the brain heterotrimeric PAF-AH Ib, whose
catalytic beta and gamma subunits are aligned in
pfam02266, the extracellular, plasma PAF-AH (pPAF-AH),
and the intracellular PAF-AH isoform II (PAF-AH II).
This family aligns pPAF-AH and PAF-AH II, whose
similarity was previously noted.
Length = 372
Score = 33.5 bits (77), Expect = 0.42
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 581 IDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIY--YDTIYSERYMGLPT 638
+D ++ A+ G S+GG AT + +L F+CGI++ W++ YS+ P
Sbjct: 218 LDTSKIAVIGHSFGG-ATVIQ-SLSEDTRFRCGIALDA---WMFPLGQDQYSQ--ARQPL 270
Query: 639 FEDNLEGYKIAALNNKVDRI--RDKQYLLVHGTMDDNVHFQQS 679
N E ++ K+ +I DK+ ++ T+ +VH S
Sbjct: 271 LFINSEKFQWNENIFKMKKIYSPDKERKMI--TIKGSVHQNFS 311
>gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 321
Score = 32.8 bits (75), Expect = 0.56
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 577 NLPYIDKTRTAIWGWSYGGYATGLALALDP 606
+L +D+ R + G S GG A ALDP
Sbjct: 169 SLDEVDEERIGVTGGSQGGGLALAAAALDP 198
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 33.1 bits (76), Expect = 0.69
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 25/142 (17%)
Query: 498 HKKYPLLIHVYGGPSSFQV--TERFSVDWNLYLADNKDIVVAYIDG--------RNSALK 547
+ P L++ YGG F + T RFS L+L V+A I G + +K
Sbjct: 418 KDENPTLLYAYGG---FNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMK 474
Query: 548 GNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPS 607
N D I V L + + I G S GG G AL P
Sbjct: 475 ENKQNVFD----------DFIAVAEDLIKR-GITSPEKLGIQGGSNGGLLVGAALTQRP- 522
Query: 608 NVFKCGISVAPVTDWIYYDTIY 629
+F + P+ D + Y +
Sbjct: 523 ELFGAAVCEVPLLDMLRYHLLT 544
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 32.7 bits (75), Expect = 0.74
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 28/136 (20%)
Query: 494 DTSGHKKYPLLIHVYGGPSSFQV-TERFSVDWNLYLADNKDIVVAYIDGRNSAL------ 546
S KK P+++ ++GG FQ + LA ++D+VV I+ R AL
Sbjct: 93 LASESKKLPVMVWIHGG--GFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALGFLSTG 150
Query: 547 ----KGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYI--DKTRTAIWGWSYGGYATG- 599
GN AG + DQ+ R++++N+ D ++G S G +
Sbjct: 151 DSELPGN----AG--------LLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSL 198
Query: 600 LALALDPSNVFKCGIS 615
L L+ +F I
Sbjct: 199 LLLSPASRGLFHRAIL 214
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 31.9 bits (71), Expect = 1.0
Identities = 41/288 (14%), Positives = 65/288 (22%), Gaps = 32/288 (11%)
Query: 503 LLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTV 562
+L+H G P S V A + V D R
Sbjct: 25 VLLH--GFPGSSSVWRPVFKVLPALAARYR---VIAPDLRGHGRS-------------DP 66
Query: 563 EIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDW 622
Y L L + + + G S GG P V +
Sbjct: 67 AGYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPG 126
Query: 623 IYYDTIYSERY-MGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMM 681
+ + L D L G AA L G + ++ +
Sbjct: 127 LLEAALRQPAGAAPLAALADLLLGLDAAAF---------AALLAALGLLAALAAAARAGL 177
Query: 682 LAKSLQHADIMFQSQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHF 741
+ + L++HG D V
Sbjct: 178 AEALRAPLLGAAAAAFARAARADLAAALLALLDRDLRAALARITVPTLIIHGEDDPVVPA 237
Query: 742 QQSMMLAKSLQHADIMFQSQTYPDEEHGLIGVRPHFYH-TLERFLDSC 788
+ + LA +L + + P H P + L FL+
Sbjct: 238 ELARRLAAALPND---ARLVVIPGAGHFPHLEAPEAFAAALLAFLERL 282
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 31.3 bits (71), Expect = 1.3
Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 12/153 (7%)
Query: 584 TRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNL 643
+ + G S GG LA A + K + V V + + L DN
Sbjct: 42 DKVNLVGHSMGG-LIALAYAAKYPDRVKALVLVGTVHPAGLSSPLTPRGNL-LGLLLDNF 99
Query: 644 EGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPT 703
++ + R + L F + L ++ +
Sbjct: 100 FNRLYDSVEALLGRAIKQFQAL-------GRPFVSDFLKQFELS--SLIRFGETLALDGL 150
Query: 704 FEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMD 736
L + + + I D L++ G D
Sbjct: 151 LGYALGYDLVWDRSAALKDI-DVPTLIIWGDDD 182
>gnl|CDD|203252 pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family
consists of several bacterial acetyl xylan esterase
proteins. Acetyl xylan esterases are enzymes that
hydrolyse the ester linkages of the acetyl groups in
position 2 and/or 3 of the xylose moieties of natural
acetylated xylan from hardwood. These enzymes are one of
the accessory enzymes which are part of the xylanolytic
system, together with xylanases, beta-xylosidases,
alpha-arabinofuranosidases and methylglucuronidases;
these are all required for the complete hydrolysis of
xylan.
Length = 319
Score = 31.5 bits (72), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 577 NLPYIDKTRTAIWGWSYGGYATGLALA---LDPS 607
+LP +D+ R ++G S GG LALA L P
Sbjct: 167 SLPEVDEERIGVYGASQGG---ALALAAAALSPR 197
>gnl|CDD|219995 pfam08737, Rgp1, Rgp1. Rgp1 forms heterodimer with Ric1
(pfam07064) which associates with Golgi membranes and
functions as a guanyl-nucleotide exchange factor.
Length = 402
Score = 30.8 bits (70), Expect = 3.0
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 12/132 (9%)
Query: 161 PVPLTRGRFTVTEILAWDERENNPLLILSHNQESDGSTPVDSWDHLTFIDL--DDQAGIK 218
P+ + V ++P L + ST + ++ +L +
Sbjct: 178 PIIILDDEARVEVKSEESRAPSSPFLERHAQSKKSSSTLEEFLEY--LKELLSSRSYNMP 235
Query: 219 DKVPVPLTRGRFTVTEILAWDEKENNVEPVLSRVNWANESVVAAWVNRVQNRARITRCSI 278
D L + ++ P+ + N + R +I+R
Sbjct: 236 DSTLEDLLKSSQFGKS----LRTSDSEPPLSVKDQIPNAISNLLSQLQNPTRYQISR--- 288
Query: 279 NEGT-CDVVFSR 289
N V S+
Sbjct: 289 NGEKVATVSLSK 300
>gnl|CDD|235312 PRK04792, tolB, translocation protein TolB; Provisional.
Length = 448
Score = 30.8 bits (70), Expect = 3.1
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 21/92 (22%)
Query: 303 RFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEI 362
RFS DGKK+ L+LS DG + D I K +TR R TE
Sbjct: 268 RFSPDGKKLALVLS----KDGQPEIYVVD------------IATKALTRITRHRAIDTEP 311
Query: 363 LAWDEKENNVYFLSTQGS-PIVQHMYRINIAD 393
+W ++ F S +G P +YR+N+A
Sbjct: 312 -SWHPDGKSLIFTSERGGKP---QIYRVNLAS 339
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 30.1 bits (68), Expect = 4.2
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 579 PYIDKT------RTAIWGWSYGGYATGLALALDPSNVFKCGISVAP 618
P+I+ RTAI G S GG AL P F ++P
Sbjct: 126 PFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPD-CFGRYGLISP 170
>gnl|CDD|143443 cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, PutA. The proline catabolic enzymes of
the aldehyde dehydrogenase (ALDH) protein superfamily,
proline dehydrogenase and
Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH,
(EC=1.5.1.12 )), catalyze the two-step oxidation of
proline to glutamate; P5CDH catalyzes the oxidation of
glutamate semialdehyde, utilizing NAD+ as the electron
acceptor. In some bacteria, the two enzymes are fused
into the bifunctional flavoenzyme, proline utilization A
(PutA) These enzymes play important roles in cellular
redox control, superoxide generation, and apoptosis. In
certain prokaryotes such as Escherichia coli, PutA is
also a transcriptional repressor of the proline
utilization genes.
Length = 518
Score = 30.2 bits (69), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 391 IADPTATPECITCDLLTSA----NQKCS 414
I D TA PE D++ SA Q+CS
Sbjct: 287 IVDSTALPEQAVKDVVQSAFGSAGQRCS 314
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes such
as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 29.6 bits (67), Expect = 7.5
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 564 IYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVT 620
+ D + + + + + ++ +G SY G A P V S AP+
Sbjct: 93 LADVASFIKAMNQKFNGLSSSKWITFGGSYSGSLAAWARKKYPHLVVGAVASSAPLL 149
>gnl|CDD|115172 pfam06500, DUF1100, Alpha/beta hydrolase of unknown function
(DUF1100). This family consists of several hypothetical
bacterial proteins of unknown function. Members of this
family have an alpha/beta hydrolase fold.
Length = 411
Score = 29.4 bits (66), Expect = 7.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 577 NLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTD 621
++P++D R ++G+ +GG A L+ V C APV D
Sbjct: 254 DVPWVDHHRVGLFGFRFGGNAMVRLAFLESEKVKACVCLGAPVHD 298
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 28.1 bits (63), Expect = 9.5
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 30/107 (28%)
Query: 581 IDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFE 640
+D R + G S GG L LA V + A D + + +P
Sbjct: 55 LDPERIVLVGHSLGGGVA-LLLAARDPRVKAAVVLAAGD----PPDALDDLAKLTVPV-- 107
Query: 641 DNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ 687
L++HGT D V +++ LA +L
Sbjct: 108 -----------------------LIIHGTRDGVVPPEEAEALAAALP 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,271,470
Number of extensions: 4086279
Number of successful extensions: 2834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2814
Number of HSP's successfully gapped: 38
Length of query: 790
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 685
Effective length of database: 6,280,432
Effective search space: 4302095920
Effective search space used: 4302095920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)