RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy463
(790 letters)
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 448 bits (1155), Expect = e-147
Identities = 171/486 (35%), Positives = 249/486 (51%), Gaps = 33/486 (6%)
Query: 223 VPLTRGRFTVTEILAWDEKENNVEPVLSRVNWANES-VVAAWVNRVQNRARITRCSINEG 281
+ T + + + + + S + W + V W+ RVQN + ++ C E
Sbjct: 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRED 288
Query: 282 TCDVVFSR------DLDRGWFEPFD--HLRFSSDGKKMLLILSHNQESDGSTPVDSWDHL 333
+ + GW F FS D I S + DG + H+
Sbjct: 289 WQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS---DKDG------YKHI 339
Query: 334 TFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIAD 393
+I + + +T G++ I + + P +++YRI+I
Sbjct: 340 HYIKDTV------ENAIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGS 393
Query: 394 PTATPECITCDLLTSANQKCSYSGATFSTNVSYYVLSCIGPGIP-EIMLFDKTGQRLLYW 452
+ +C+TC L +C Y A+FS YY L C GPGIP + +T Q +
Sbjct: 394 YPPSKKCVTCHLRKE---RCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450
Query: 453 DTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPS 512
+ N++L AL NI LP E + + + K+ LPP D S KKYPLLI VYGGP
Sbjct: 451 EENKELENALKNIQLPKEEIKKLEV-DEITLWYKMILPPQFDRS--KKYPLLIQVYGGPC 507
Query: 513 SFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTR 572
S V F+V+W YLA + +V+A +DGR +A +G+ L YA YR+LG E+ DQI R
Sbjct: 508 SQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVR 567
Query: 573 YLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSER 632
E + +ID+ R AIWGWSYGGY + LALA +FKCGI+VAPV+ W YY ++Y+ER
Sbjct: 568 KFIE-MGFIDEKRIAIWGWSYGGYVSSLALASGT-GLFKCGIAVAPVSSWEYYASVYTER 625
Query: 633 YMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIM 692
+MGLPT +DNLE YK + + + + R+ YLL+HGT DDNVHFQ S +AK+L +A +
Sbjct: 626 FMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQVD 685
Query: 693 FQSQRY 698
FQ+ Y
Sbjct: 686 FQAMWY 691
Score = 131 bits (330), Expect = 1e-31
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 697 RYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 756
R+MGLPT +DNLE YK + + + + R+ YLL+HGT DDNVHFQ S +AK+L +A +
Sbjct: 625 RFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQNSAQIAKALVNAQV 684
Query: 757 MFQSQTYPDEEHGLIGV-RPHFYHTLERFLDSCFA 790
FQ+ Y D+ HGL G+ H Y + FL CF+
Sbjct: 685 DFQAMWYSDQNHGLSGLSTNHLYTHMTHFLKQCFS 719
Score = 106 bits (266), Expect = 8e-24
Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 57/221 (25%)
Query: 4 EEVLSSSSALWFSPSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQ-------------- 49
EE+L++ ALW+SP+G LAYA F+D ++ +YG+ +P +
Sbjct: 165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224
Query: 50 -------------------YTQAINLREPVLSRVNWANES-VVAAWVNRVQNRARITRCS 89
I + S + W + V W+ RVQN + ++ C
Sbjct: 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284
Query: 90 INEGTCDVVFSR------DLDRGWFEPFD--HLRFSSDGKKMLLILSHNQESDGSTPVDS 141
E + + GW F FS D I S + DG
Sbjct: 285 FREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFS---DKDG------ 335
Query: 142 WDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDEREN 182
+ H+ +I + + +T G++ I +
Sbjct: 336 YKHIHYIKDT------VENAIQITSGKWEAINIFRVTQDSL 370
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 435 bits (1121), Expect = e-142
Identities = 137/475 (28%), Positives = 223/475 (46%), Gaps = 27/475 (5%)
Query: 231 TVTEILAWDEKENNVEPVLSRVNWANES-VVAAWVNRVQNRARITRCSINEGTCDVVFSR 289
T + + E ++ V WA + V W+NR QN + +T C G C
Sbjct: 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH-E 297
Query: 290 DLDRGWFEPFDHLR-FSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKD-K 347
D W + FS DG+K I + Q I +
Sbjct: 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ--------GGRGKFYHITVSSSQPNSSND 349
Query: 348 VPVPLTRGRFTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLT 407
+T G + VT+ILA+DEK N +YFLST+ P + +Y N +C++CDL
Sbjct: 350 NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-NRQCLSCDL-- 406
Query: 408 SANQKCSYSGATFSTNVSYYVLSCIGPGIPE-IMLFDKTGQRLLYWDTNEDLRTALTNIT 466
+ C+Y A+FS ++ +++L C GPG+P + +++ +TNE ++ A+ +
Sbjct: 407 --VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLETNEHVKKAINDRQ 464
Query: 467 LPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNL 526
+P VEY + I + +++ P + YPLL+ V G P S V E+F V W
Sbjct: 465 MPKVEYRDIEID-DYNLPMQILKPATFTDT--THYPLLLVVDGTPGSQSVAEKFEVSWET 521
Query: 527 YLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRT 586
+ + VV DGR S +G L + RRLG +E DQ+ R + + YID+TR
Sbjct: 522 VMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLK-EQYIDRTRV 580
Query: 587 AIWGWSYGGYATGLALALDP---SNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNL 643
A++G YGGY + L F CG +++P+TD+ Y + +SERY+GL +
Sbjct: 581 AVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLH--GLDN 638
Query: 644 EGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
Y++ + ++V + ++Q+L++H T D+ +HFQ + L L + Q Y
Sbjct: 639 RAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIY 693
Score = 124 bits (312), Expect = 2e-29
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 697 RYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 756
RY+GL + Y++ + ++V + ++Q+L++H T D+ +HFQ + L L
Sbjct: 629 RYLGLH--GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKA 686
Query: 757 MFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCF 789
+ Q YPDE H ++ H Y ++ F CF
Sbjct: 687 NYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECF 721
Score = 111 bits (279), Expect = 2e-25
Identities = 56/213 (26%), Positives = 83/213 (38%), Gaps = 43/213 (20%)
Query: 4 EEVLSSSSALWFSPSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQ---YTQA------- 53
EE+L + A W+SP G LAYA+ +D+R IM +P Y +P+ + Y +A
Sbjct: 169 EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228
Query: 54 ---------------------INLREPVLSRVNWANES-VVAAWVNRVQNRARITRCSIN 91
+RE ++ V WA + V W+NR QN + +T C
Sbjct: 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288
Query: 92 EGTCDVVFSRDLDRGWFEPFDHLR-FSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDL 150
G C D W + FS DG+K I + Q I +
Sbjct: 289 TGVCTKKH-EDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ--------GGRGKFYHITV 339
Query: 151 DDQAGIKD-KVPVPLTRGRFTVTEILAWDEREN 182
+T G + VT+ILA+DE+ N
Sbjct: 340 SSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN 372
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 429 bits (1104), Expect = e-140
Identities = 160/504 (31%), Positives = 243/504 (48%), Gaps = 45/504 (8%)
Query: 205 HLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDEKENNVEPVLSRVNWA-NESVVAAW 263
++ D + + + + +T + L V WA E + W
Sbjct: 229 KFFVVNTDSLSSVTNATSIQIT-----------APASMLIGDHYLCDVTWATQERISLQW 277
Query: 264 VNRVQNRARITRCSINEGTCDV------VFSRDLDRGWFEPF--DHLRFSSDGKKMLLIL 315
+ R+QN + + C +E + GW F F+ DG I+
Sbjct: 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII 337
Query: 316 SHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDEKENNVYFL 375
S+ + + H+ + I K +T+G + V I A
Sbjct: 338 SNE---------EGYRHICYFQ------IDKKDCTFITKGTWEVIGIEALTSDYLYYISN 382
Query: 376 STQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGATFSTNVSYYVLSCIGPG 435
+G P +++Y+I + D T C++C+L +C Y +FS YY L C GPG
Sbjct: 383 EYKGMPGGRNLYKIQLIDYT-KVTCLSCELNPE---RCQYYSVSFSKEAKYYQLRCSGPG 438
Query: 436 IP-EIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGID 494
+P + + L + N L L N+ +PS + I + ++ LPP D
Sbjct: 439 LPLYTLHSSVNDKGLRVLEDNSALDKMLQNVQMPSKKL-DFIILNETKFWYQMILPPHFD 497
Query: 495 TSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYA 554
S KKYPLL+ VY GP S + F ++W YLA ++I+VA DGR S +G+ + +A
Sbjct: 498 KS--KKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHA 555
Query: 555 GYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGI 614
RRLGT E+ DQI R + + ++D R AIWGWSYGGY T + L VFKCGI
Sbjct: 556 INRRLGTFEVEDQIEAARQFSK-MGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGI 613
Query: 615 SVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNV 674
+VAPV+ W YYD++Y+ERYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNV
Sbjct: 614 AVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNV 673
Query: 675 HFQQSMMLAKSLQHADIMFQSQRY 698
HFQQS ++K+L + FQ+ Y
Sbjct: 674 HFQQSAQISKALVDVGVDFQAMWY 697
Score = 128 bits (322), Expect = 1e-30
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 697 RYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 756
RYMGLPT EDNL+ Y+ + + ++ + + +YLL+HGT DDNVHFQQS ++K+L +
Sbjct: 631 RYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGV 690
Query: 757 MFQSQTYPDEEHGLIG--VRPHFYHTLERFLDSCFA 790
FQ+ Y DE+HG+ H Y + F+ CF+
Sbjct: 691 DFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726
Score = 97.2 bits (242), Expect = 6e-21
Identities = 49/227 (21%), Positives = 76/227 (33%), Gaps = 68/227 (29%)
Query: 4 EEVLSSSSALWFSPSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQYTQAINLREP---- 59
EEV S+ SALW+SP+G LAYA F+D ++ FY + QY + + + P
Sbjct: 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL---QYPKTVRVPYPKAGA 223
Query: 60 -------------------------------------VLSRVNWA-NESVVAAWVNRVQN 81
L V WA E + W+ R+QN
Sbjct: 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN 283
Query: 82 RARITRCSINEGTCDV------VFSRDLDRGWFEPF--DHLRFSSDGKKMLLILSHNQES 133
+ + C +E + GW F F+ DG I+S+
Sbjct: 284 YSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE--- 340
Query: 134 DGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDER 180
+ + H+ + I K +T+G + V I A
Sbjct: 341 ------EGYRHICYFQ------IDKKDCTFITKGTWEVIGIEALTSD 375
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 419 bits (1078), Expect = e-136
Identities = 117/459 (25%), Positives = 197/459 (42%), Gaps = 42/459 (9%)
Query: 246 EPVLSRVNWANES--VVAAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWFEPFDHLR 303
E L+ ++W+ + + A VNR QN ++ G + D+ + EP L
Sbjct: 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316
Query: 304 FSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEIL 363
F + S DG W+HL D ++ +T+G + VT
Sbjct: 317 FLPGSNNQFIWQS---RRDG------WNHLYLYDTTG------RLIRQVTKGEWEVTNFA 361
Query: 364 AWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGATFSTN 423
+D K +YF ST+ SP+ +H Y I+I + +T + S +
Sbjct: 362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDLT--------PESGMHRTQLSPD 411
Query: 424 VSYYVLSCIGPGIPEIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNM-E 482
S + P +P + G+ ++ T +P + ++
Sbjct: 412 GSAIIDIFQSPTVPRKVTVTNIGKGSHTLLEAKNP---DTGYAMPEIRTGTIMAADGQTP 468
Query: 483 AQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVD---WNLYLADNKDIVVAYI 539
KL +P D + KKYP++++VYGGP + VT+ + W++Y+A K V +
Sbjct: 469 LYYKLTMPLHFDPA--KKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQ-KGYAVFTV 525
Query: 540 DGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATG 599
D R SA +G + +RRLG E+ DQ+ +L+ ++D R + GWSYGG+ T
Sbjct: 526 DSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKS-QSWVDADRIGVHGWSYGGFMTT 584
Query: 600 LALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIR 659
+ +VFK G++ PV DW Y +Y ERY P ++N EGY A L + ++
Sbjct: 585 NLMLTHG-DVFKVGVAGGPVIDWNRYAIMYGERYFDAP--QENPEGYDAANLLKRAGDLK 641
Query: 660 DKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ +L+HG +D V +Q S++ + A Y
Sbjct: 642 GR-LMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVY 679
Score = 117 bits (294), Expect = 3e-27
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 697 RYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 756
RY P ++N EGY A L + ++ + +L+HG +D V +Q S++ + A
Sbjct: 616 RYFDAP--QENPEGYDAANLLKRAGDLKGR-LMLIHGAIDPVVVWQHSLLFLDACVKART 672
Query: 757 MFQSQTYPDEEHGLIGV-RPHFYHTLERFLDSCF 789
YP EH ++G R H Y T+ R+
Sbjct: 673 YPDYYVYPSHEHNVMGPDRVHLYETITRYFTDHL 706
Score = 114 bits (286), Expect = 3e-26
Identities = 39/207 (18%), Positives = 67/207 (32%), Gaps = 43/207 (20%)
Query: 4 EEVLSSSSALWFSPSGNNLAYASFDDNRTVIMTIPFYGN------------PGHPSSQY- 50
+ ++SP G+ LA+ D + I Y G PS
Sbjct: 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236
Query: 51 ----------TQAINL---REPVLSRVNWANES--VVAAWVNRVQNRARITRCSINEGTC 95
T + +E L+ ++W+ + + A VNR QN ++ G
Sbjct: 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF 296
Query: 96 DVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAG 155
+ D+ + EP L F + S DG W+HL D
Sbjct: 297 VRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS---RRDG------WNHLYLYDTT---- 343
Query: 156 IKDKVPVPLTRGRFTVTEILAWDEREN 182
++ +T+G + VT +D +
Sbjct: 344 --GRLIRQVTKGEWEVTNFAGFDPKGT 368
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 417 bits (1073), Expect = e-135
Identities = 134/472 (28%), Positives = 208/472 (44%), Gaps = 48/472 (10%)
Query: 238 WDEKENNVEPVLSRVNWA-NESVVAAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWF 296
W + + L+RVNW + + +R Q + + ++ V+ + W
Sbjct: 278 WIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA-HETSPTWV 336
Query: 297 EPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGR 356
+ LRF DG +L S E G + HL ID + LT G
Sbjct: 337 PLHNSLRFLDDGS--ILWSS---ERTG------FQHLYRIDSKGK-------AAALTHGN 378
Query: 357 FTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYS 416
++V E+LA DEK YF + S +Y + + P+ ++
Sbjct: 379 WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ--PQRLSK--------APGMH 428
Query: 417 GATFSTNVSYYVLSCIGPGIP-EIMLFDKTGQRLLYWDTNEDLRTALTNITL----PSVE 471
A+F+ N S YV S P +I LF G+++ N+ VE
Sbjct: 429 SASFARNASVYVDSWSNNSTPPQIELFRANGEKIATLVENDLADPKHPYARYREAQRPVE 488
Query: 472 YMSVPIQPNM-EAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVD----WNL 526
+ ++ + P G D + K+YP+ ++VYGGP+S VT+ + +N
Sbjct: 489 FGTLTAADGKTPLNYSVIKPAGFDPA--KRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQ 546
Query: 527 YLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRT 586
YLA + VV +D R + +G A Y + GTVE+ DQ+ +L++ P++D R
Sbjct: 547 YLAQ-QGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQ-QPWVDPARI 604
Query: 587 AIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGY 646
+ GWS GGY T + LA + + CG++ APVTDW YD+ Y+ERYM LP N GY
Sbjct: 605 GVQGWSNGGYMTLMLLAKAS-DSYACGVAGAPVTDWGLYDSHYTERYMDLP--ARNDAGY 661
Query: 647 KIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY 698
+ A + ++ +R LL+HG DDNV F S L +LQ F+ Y
Sbjct: 662 REARVLTHIEGLRSP-LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTY 712
Score = 118 bits (298), Expect = 1e-27
Identities = 37/94 (39%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 697 RYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 756
RYM LP N GY+ A + ++ +R LL+HG DDNV F S L +LQ
Sbjct: 649 RYMDLP--ARNDAGYREARVLTHIEGLRSP-LLLIHGMADDNVLFTNSTSLMSALQKRGQ 705
Query: 757 MFQSQTYPDEEHGLIGV-RPHFYHTLERFLDSCF 789
F+ TYP +HGL G H Y E FL C
Sbjct: 706 PFELMTYPGAKHGLSGADALHRYRVAEAFLGRCL 739
Score = 107 bits (270), Expect = 2e-24
Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 47/207 (22%)
Query: 4 EEVLSSSSALWFSPSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQY------------- 50
+E + + W++P + +AYA D++ + +
Sbjct: 205 DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264
Query: 51 -----------TQAINL---REPVLSRVNWA-NESVVAAWVNRVQNRARITRCSINEGTC 95
TQ I+L ++ L+RVNW + + +R Q + + ++
Sbjct: 265 LGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQ 324
Query: 96 DVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAG 155
V+ + W + LRF DG +L S E G + HL ID +
Sbjct: 325 RVLA-HETSPTWVPLHNSLRFLDDGS--ILWSS---ERTG------FQHLYRIDSKGK-- 370
Query: 156 IKDKVPVPLTRGRFTVTEILAWDEREN 182
LT G ++V E+LA DE+
Sbjct: 371 -----AAALTHGNWSVDELLAVDEKAG 392
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 121 bits (305), Expect = 1e-28
Identities = 105/584 (17%), Positives = 180/584 (30%), Gaps = 97/584 (16%)
Query: 143 DHLTFIDLDDQA-------GIKDKVPVPLTRGRFTVTEI----LAWDERENNPLLILSHN 191
L F DQ VP PLT + +
Sbjct: 92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMA--- 148
Query: 192 QESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAW--DEKENNVEPVL 249
+E G P D L + LD A L+ D ++
Sbjct: 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQ------A 202
Query: 250 SRVNWANESVVAAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWFEPFDHLRFSSDGK 309
+ W + W AR+T +G R L G E ++ DG
Sbjct: 203 VWLAWDHPR--MPWEGTELKTARVTE----DGRFADT--RTLLGGPEEAIAQAEWAPDGS 254
Query: 310 KMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTR------GRFTVTEIL 363
L++ + + G W +L +D A L R G +
Sbjct: 255 --LIVAT---DRTG------WWNLHRVDPATGA------ATQLCRREEEFAGPLWTPGMR 297
Query: 364 AWDEKENNVYFLSTQ-GSPIVQHMYRINIAD----PTATPECITCDLLTSANQKCSYSGA 418
+ N + + G+ + ++ A P LT + + A
Sbjct: 298 WFAPLANGLIAVVHGKGAA---VLGILDPESGELVDAAGPWTEWAATLTVSGTRAVGVAA 354
Query: 419 TFSTNVSYYVLSCIGPGIPEIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQ 478
+ T L TG+ + D + P + +
Sbjct: 355 SPRTAYEVVELD------------TVTGRARTIGARHTD---PVDPAYYPEPQIRTFTAP 399
Query: 479 PNMEAQVKLFLPPGIDTSGH--KKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVV 536
E ++ P D +G + P ++ +GGP+S +V Y ++ I V
Sbjct: 400 DGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTS-RVPAVLD-LDVAYFT-SRGIGV 456
Query: 537 AYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGY 596
A ++ S G + R G V++ D V L E D+ R A+ G S GG+
Sbjct: 457 ADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEE-GTADRARLAVRGGSAGGW 515
Query: 597 ATGLALALDPSNVFKCGISVAPVTDWI--------YYDTIYSERYMGLPTFEDNLEGYK- 647
+L ++V+ CG + PV D + +++ Y + +G E+ E Y+
Sbjct: 516 TAASSLVS--TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSF--EEFPERYRD 571
Query: 648 IAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 691
A L DR+R +LL+ G D +Q +++ +
Sbjct: 572 RAPLTR-ADRVR-VPFLLLQGLEDPVCPPEQCDRFLEAVAGCGV 613
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 120 bits (302), Expect = 2e-28
Identities = 74/452 (16%), Positives = 130/452 (28%), Gaps = 65/452 (14%)
Query: 247 PVLSRVNWANESVVAAWVNRVQNRARITRCSINEGTCDVVFSRDLDRGWFEPFDHLRFSS 306
P V+ ++A R + +++ G V S + F S
Sbjct: 151 PGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGE------GSFSSASISP 204
Query: 307 DGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWD 366
K + + L +D D + + + ++
Sbjct: 205 GMKVTAGLET-----------AREARLVTVDPRDGS---------VEDLELPSKDFSSYR 244
Query: 367 EKENNVYFLSTQGSPIVQHMY----RINIADPTATPECITCDLLTSANQKCSYSGATFST 422
G V + I + K S + ST
Sbjct: 245 PTAITWLGYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLVTSHTSLST 304
Query: 423 NVSYYVLSCIGPGIPEIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNME 482
L +G+ LL EDLR ++ + V
Sbjct: 305 PPRIVSLP--------------SGEPLLEGGLPEDLRR-----SIAGSRLVWVESFDGSR 345
Query: 483 AQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGR 542
+ P ++ V+GGP + + ++ + + LA V + R
Sbjct: 346 VPTYVLESGR----APTPGPTVVLVHGGPFA-EDSDSWD-TFAASLA-AAGFHVVMPNYR 398
Query: 543 NSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLAL 602
S G + E+ D R+ +E+ I G+SYGGY T AL
Sbjct: 399 GSTGYGEEWRLKIIGDPCGGELEDVSAAARWARES-GLAS--ELYIMGYSYGGYMTLCAL 455
Query: 603 ALDPSNVFKCGISVAPVTDWI--YYDTIYSERYMGLPTFEDNLEGY-KIAALNNKVDRIR 659
+ P +FK G++ A V DW Y + + R + E + +N+ VDRI+
Sbjct: 456 TMKP-GLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINH-VDRIK 513
Query: 660 DKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 691
+ L+H + + L L
Sbjct: 514 -EPLALIHPQNASRTPLKPLLRLMGELLARGK 544
Score = 46.0 bits (109), Expect = 4e-05
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 718 NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLIGV--RP 775
N VDRI+ + L+H + + L L F++ PD H + +
Sbjct: 507 NHVDRIK-EPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAV 565
Query: 776 HFYHTLERFLD 786
FL
Sbjct: 566 KILLPAVFFLA 576
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 100 bits (250), Expect = 2e-23
Identities = 32/193 (16%), Positives = 54/193 (27%), Gaps = 15/193 (7%)
Query: 499 KKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRR 558
P ++ V+G S + S+ + D R + + +
Sbjct: 26 TGMPGVLFVHGWGGS----QHHSLVRAREAV-GLGCICMTFDLRGHEGYASMRQSVTRAQ 80
Query: 559 LGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAP 618
+ D L LPY+D A+ G SYGGY + L P V +
Sbjct: 81 ----NLDDIKAAYDQLAS-LPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPA 133
Query: 619 VTDWIYYDTIYSERYM--GLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHF 676
+ ++D L + + + LLV D V
Sbjct: 134 LYKDAHWDQPKVSLNADPDLMDYRRRALAPGDNLALAACAQYK-GDVLLVEAENDVIVPH 192
Query: 677 QQSMMLAKSLQHA 689
A + +A
Sbjct: 193 PVMRNYADAFTNA 205
Score = 50.2 bits (120), Expect = 9e-07
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLIGV--RPHFYHTLERFLD 786
LLV D V A + +A S+ +H L + + L +L
Sbjct: 180 LLVEAENDVIVPHPVMRNYADAFTNARS-LTSRVIAGADHALSVKEHQQEYTRALIDWLT 238
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 94.4 bits (234), Expect = 9e-21
Identities = 49/350 (14%), Positives = 98/350 (28%), Gaps = 54/350 (15%)
Query: 349 PVPLTRGRFTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTS 408
L+ +F+V + + S ++ + + + +L T
Sbjct: 35 GQKLSPDQFSVKVKTGDTYSSRTITKVYANNSG------GLSFSIFNNRGKYVVLELSTE 88
Query: 409 ANQKCSYSGATFSTNVSYYVLSCIGPGIPEIMLFDKTGQRLLYWDTNEDLRTALTNITLP 468
+ N + + +P +FD G + + + + L
Sbjct: 89 DLHSNTIVFGPNFLNTRMKLDYIVSQLVP---IFDVDGNEVEPFTSKQTDEKHLIIDDFL 145
Query: 469 SVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTER--------F 520
+ + + +E +LF+P ++ +KYPL++ ++G
Sbjct: 146 AFTFKDP--ETGVEIPYRLFVPKDVNPD--RKYPLVVFLHGAGERGTDNYLQVAGNRGAV 201
Query: 521 SVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPY 580
Y + V+ ++ + I + R L +
Sbjct: 202 VWAQPRYQVVHPCFVL-APQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDE-YN 259
Query: 581 IDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFE 640
ID+ R I G S GGY T ++ +F I + D ER +P
Sbjct: 260 IDENRIYITGLSMGGYGT-WTAIMEFPELFAAAIPICGGGDVSKV-----ERIKDIPI-- 311
Query: 641 DNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD 690
+ H D V + S +L K L
Sbjct: 312 -----------------------WVFHAEDDPVVPVENSRVLVKKLAEIG 338
Score = 44.7 bits (105), Expect = 8e-05
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 718 NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLIGVRPHF 777
+KV+RI+D + H D V + S +L K L + Y G PH
Sbjct: 301 SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHG 360
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 78.0 bits (192), Expect = 1e-15
Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 43/230 (18%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSAL 546
P K+P LI +G S+ + L V +D R
Sbjct: 99 YIKPKT-----EGKHPALIRFHGYSSN-----SGDWNDKLNYV-AAGFTVVAMDVRGQGG 147
Query: 547 KGNTLK------YAGYRRLGTVEIYDQ----------INVTRYLQENLPYIDKTRTAIWG 590
+ + G+ G + D + + +P +D+ R + G
Sbjct: 148 QSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMN-MPEVDEDRVGVMG 206
Query: 591 WSYGGYATGLALALDPSNVFKCGISVAPVTDW--IYYDTIYSERYMGLPTF------EDN 642
S GG + AL+P V K ++D+ ++ + Y + +
Sbjct: 207 PSQGGGLSLACAALEP-RVRKVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHE 265
Query: 643 LEGYKIAALN-----NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ 687
E L N RI+ L+ G MD ++Q
Sbjct: 266 RENEVFTKLGYIDVKNLAKRIK-GDVLMCVGLMDQVCPPSTVFAAYNNIQ 314
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 78.5 bits (193), Expect = 1e-15
Identities = 38/214 (17%), Positives = 67/214 (31%), Gaps = 28/214 (13%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSAL 546
+ +P G +P +I + GG S + E F + D + A DG
Sbjct: 143 VRIPEG-----PGPHPAVIML-GGLESTK-EESF--QMENLVLDR-GMATATFDGPGQGE 192
Query: 547 KGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDP 606
+ AG T + D + L I + G S GG + A +P
Sbjct: 193 MFEYKRIAGDYEKYTSAVVDLL-------TKLEAIRNDAIGVLGRSLGGNYALKSAACEP 245
Query: 607 SNVFKCGISVAPVTDWIYYDTIYS------ERYMGLPTFED-NLEGYKIAALNNKVDRIR 659
IS +D Y+D + + T E+ L + + + +I
Sbjct: 246 R--LAACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIA 303
Query: 660 DKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMF 693
++HG D V + + + +
Sbjct: 304 -CPTYILHGV-HDEVPLSFVDTVLELVPAEHLNL 335
Score = 40.4 bits (94), Expect = 0.002
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Query: 697 RYMGLPTFED-NLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD 755
+ T E+ L + + + +I ++HG D V + + +
Sbjct: 275 YVSKVDTLEEARLHVHAALETRDVLSQIA-CPTYILHGV-HDEVPLSFVDTVLELVPAEH 332
Query: 756 IMFQSQTYPDEEHGLIGVRPHFYHTLERFLDSCFA 790
+ D +H + + +L
Sbjct: 333 LNLV--VEKDGDHCCHNLGIRPRLEMADWLYDVLV 365
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 75.6 bits (186), Expect = 7e-15
Identities = 37/271 (13%), Positives = 73/271 (26%), Gaps = 40/271 (14%)
Query: 443 DKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYP 502
+ + L DL+ V ++ N +P +P
Sbjct: 29 KLSLEELAKVQAEPDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVPDK-----EGPHP 83
Query: 503 LLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYA-----GYR 557
++ +G + + + A + R +T G+
Sbjct: 84 AIVKYHGYN----ASYDGEIHEMVNWA-LHGYATFGMLVRGQQRSEDTSISPHGHALGWM 138
Query: 558 RLGTVE---------IYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSN 608
G ++ D + + +D+TR + G S GG T A AL
Sbjct: 139 TKGILDKDTYYYRGVYLDAVRALEVISS-FDEVDETRIGVTGGSQGGGLTIAAAALSD-I 196
Query: 609 VFKCGISVAPVTDWI----------YYDTIYSERYMGLP-TFEDNLEGY-KIAALNNKVD 656
++++ Y + R G P T ++ +N D
Sbjct: 197 PKAAVADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNL-AD 255
Query: 657 RIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ 687
R++ L+ G +D L+
Sbjct: 256 RVK-VPVLMSIGLIDKVTPPSTVFAAYNHLE 285
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 69.2 bits (168), Expect = 2e-12
Identities = 33/245 (13%), Positives = 58/245 (23%), Gaps = 42/245 (17%)
Query: 470 VEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYP--LLIHVYGG------------PSSFQ 515
+E P + + P + P L I G +
Sbjct: 87 LEKWEFYPFPKSVSTFLVLKPEHLK----GAVPGVLCIPGSGRTKEGLVGEPGICDKLTE 142
Query: 516 VTERFSVDWNLYLADNKDIVVAY-------IDGRNSALKGNTLKYAGYRR--------LG 560
V L + + VA KG Y R
Sbjct: 143 DYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWL 202
Query: 561 TVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVT 620
Y + V ++ + YI K R I G+S G + LD + +
Sbjct: 203 GYTSYLDMQVLNWM-KAQSYIRKDRIVISGFSLGTEPMMVLGVLDKD--IYAFVYNDFLC 259
Query: 621 DWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVD------RIRDKQYLLVHGTMDDNV 674
+ ++ N + I + + + + G +D +
Sbjct: 260 QTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASLAPRPIIFTEGGLDRDF 319
Query: 675 HFQQS 679
QS
Sbjct: 320 RLVQS 324
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 68.5 bits (167), Expect = 3e-12
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 29/209 (13%)
Query: 497 GHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGY 556
K +P++I G S Q T+ + DI + +D + Y
Sbjct: 189 TDKPHPVVIVS-AGLDSLQ-TDMWR--LFRDHLAKHDIAMLTVDMPSVGYSSKYPLTEDY 244
Query: 557 RRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISV 616
RL V L +PY+D R + G+ +GG A L+ + K + +
Sbjct: 245 SRLHQ-------AVLNELFS-IPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKI-KACVIL 295
Query: 617 APVTDWIYYDTIYSERY-----------MGLPTFEDNLEGYKIAALNNKVDRIRDKQ--- 662
I+ ++ +G + ++AA + KV +
Sbjct: 296 GAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTK 355
Query: 663 --YLLVHGTMDDNVHFQQSMMLAKSLQHA 689
L + D + + M+A +
Sbjct: 356 VPILAMSLEGDPVSPYSDNQMVAFFSTYG 384
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 67.3 bits (164), Expect = 4e-12
Identities = 32/231 (13%), Positives = 51/231 (22%), Gaps = 43/231 (18%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSAL 546
L +P + +K P ++ G R L+ + + +D R
Sbjct: 85 LLVPKLEE----EKLPCVVQYIGYNGG-----RGFPHDWLFWP-SMGYICFVMDTRGQGS 134
Query: 547 KGNTLKYAGYRRLGTVEIY---------------------DQINVTRYLQENLPYIDKTR 585
Y Y D + P +D+ R
Sbjct: 135 GWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAAS-FPQVDQER 193
Query: 586 TAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWI-YYDTIYSERYMGLPTF----- 639
I G S GG AL V + + + + Y + F
Sbjct: 194 IVIAGGSQGGGIALAVSALSKK-AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHR 252
Query: 640 ---EDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ 687
E N R + L G MD+
Sbjct: 253 DKEEIVFRTLSYFDGVNFAARAK-IPALFSVGLMDNICPPSTVFAAYNYYA 302
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 65.8 bits (161), Expect = 5e-12
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 20/144 (13%)
Query: 563 EIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTD- 621
+ + + V Y ++ L ++ + G S GG + LA A++ + K I ++P
Sbjct: 82 WLTNILAVVDYAKK-LDFVT--DIYMAGHSQGGLSVMLAAAMERDII-KALIPLSPAAMI 137
Query: 622 --WIYYDTIYSERYM--GLPTFEDNLEGYKIAA----------LNNKVDRIRDKQYLLVH 667
+ ++ +P D +G K+ + + VD+ K L+VH
Sbjct: 138 PEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTIRVEDFVDKYT-KPVLIVH 196
Query: 668 GTMDDNVHFQQSMMLAKSLQHADI 691
G D+ V ++ S+ +K ++ +
Sbjct: 197 GDQDEAVPYEASVAFSKQYKNCKL 220
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 67.4 bits (164), Expect = 5e-12
Identities = 49/326 (15%), Positives = 90/326 (27%), Gaps = 54/326 (16%)
Query: 469 SVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYL 528
+V+ +P++ LP S K LI V GG +S Y
Sbjct: 127 AVDNSKIPLKSIEVPFEGELLPGYAIISEDKAQDTLIVVGGGDTSR----EDLFYMLGYS 182
Query: 529 ADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAI 588
D V +D G + + I + + AI
Sbjct: 183 GWEHDYNVLMVDLPGQ---GKNPNQGLHFEVDARAAISAI-------LDWYQAPTEKIAI 232
Query: 589 WGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKI 648
G+S GGY T A+ D K I+ P+ D I + P +
Sbjct: 233 AGFSGGGYFTAQAVEKDKR--IKAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLV 290
Query: 649 AALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFEDNL 708
++N + + + G F ++
Sbjct: 291 TSVNKVAEV---------------------------------NLNKYAWQFGQVDFITSV 317
Query: 709 EGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEH 768
A ++I L + G +D+ +QS +L + + I + + E
Sbjct: 318 NEVLEQAQIVDYNKID-VPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESG 376
Query: 769 GL----IGVRPHFYHTLERFLDSCFA 790
+ ++ + +L+ F
Sbjct: 377 ADAHCQVNNFRLMHYQVFEWLNHIFK 402
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 64.4 bits (156), Expect = 1e-11
Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 17/194 (8%)
Query: 499 KKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRR 558
LL+ ++G S E A+ + ++ D + + R
Sbjct: 22 APKALLLALHGLQGS---KEHIL-ALLPGYAE-RGFLLLAFDAPRHGEREGPPPSSKSPR 76
Query: 559 LGTV---EIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGIS 615
R + E + G S G + L LA + ++
Sbjct: 77 YVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR--PRGVLA 134
Query: 616 VAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVH 675
+ + L Y+ + L +HG+ D V
Sbjct: 135 FIGSGFPMKLP------QGQVVEDPGVLALYQAPPATR-GEAYGGVPLLHLHGSRDHIVP 187
Query: 676 FQQSMMLAKSLQHA 689
+ ++L+
Sbjct: 188 LARMEKTLEALRPH 201
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 65.6 bits (159), Expect = 2e-11
Identities = 39/277 (14%), Positives = 74/277 (26%), Gaps = 55/277 (19%)
Query: 440 MLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTS--- 496
+ +K R L D L + E + Q E + FLPPG+
Sbjct: 85 LEPEKPFWRFLKRDVQIPFVVELEVLDGHDPEPGRLLCQAQHE---RHFLPPGVWRQSVR 141
Query: 497 ------------GHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNS 544
G +P +I ++G LA + N
Sbjct: 142 AGRVRATLFLPPGPGPFPGIIDIFGIGG------GLLEYRASLLA-GHGFATLALAYYN- 193
Query: 545 ALKGNTLKYAGY-RRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALA 603
+ + + + Y+ ++ P + + G S G +
Sbjct: 194 --------FEDLPNNMDNISLEYFEEAVCYMLQH-PQVKGPGIGLLGISLGADICLSMAS 244
Query: 604 LDP---SNVFKCGISVAPVTDWIYYDTI----------YSERYMGL----PTFEDNLEGY 646
+ V G ++ T Y + + GL + GY
Sbjct: 245 FLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGY 304
Query: 647 KIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLA 683
K ++ +++ + LL+ G D N +
Sbjct: 305 KNPSM-IPIEKAQGP-ILLIVGQDDHNWRSELYAQTV 339
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 62.9 bits (152), Expect = 2e-10
Identities = 32/241 (13%), Positives = 63/241 (26%), Gaps = 44/241 (18%)
Query: 470 VEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYP--LLIHVYGG------------PSSFQ 515
+E P + + +P I+ K P L I GG P
Sbjct: 92 LEKWEFYPLPKCVSTFLVLIPDNIN----KPVPAILCIPGSGGNKEGLAGEPGIAPKLND 147
Query: 516 VTERFSVDWNLYLADNKDIVVAYIDGRN--------SALKGNTLKYAGYRR--------L 559
+ + L + + +D G+ Y R
Sbjct: 148 RYKDPKLTQALNFV-KEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSY 206
Query: 560 GTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPV 619
Y + V +++ +I K R + G+S G + LD S + +
Sbjct: 207 LGYASYLDMQVLNWMK-TQKHIRKDRIVVSGFSLGTEPMMVLGTLDTS--IYAFVYNDFL 263
Query: 620 TDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVD------RIRDKQYLLVHGTMDDN 673
+ + N + I + + + +L G +D +
Sbjct: 264 CQTQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRPIILTEGGLDRD 323
Query: 674 V 674
+
Sbjct: 324 L 324
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 62.5 bits (151), Expect = 2e-10
Identities = 40/278 (14%), Positives = 71/278 (25%), Gaps = 57/278 (20%)
Query: 440 MLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTS--- 496
+ +K RL+ D L L + + + Q E + FLPPG+
Sbjct: 101 LEPEKPLVRLVKRDVRTPLAVELEVLDGHDPDPGRLLCQTRHE---RYFLPPGVRREPVR 157
Query: 497 ------------GHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNS 544
+P ++ ++G LA K V + N
Sbjct: 158 VGRVRGTLFLPPEPGPFPGIVDMFGTGG------GLLEYRASLLA-GKGFAVMALAYYNY 210
Query: 545 ALKGNTLKYAGY-RRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALA 603
+ + T+ + YL + P + + G S GG +
Sbjct: 211 E---------DLPKTMETLHLEYFEEAMNYLLSH-PEVKGPGVGLLGISKGGELCLSMAS 260
Query: 604 LDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLP------------------TFEDNLEG 645
+ + V + E + LEG
Sbjct: 261 FLK-GITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEG 319
Query: 646 YKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLA 683
+ V+R +L + G D N + A
Sbjct: 320 PDQKSF-IPVERAEST-FLFLVGQDDHNWKSEFYANEA 355
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 52.9 bits (127), Expect = 1e-07
Identities = 33/227 (14%), Positives = 61/227 (26%), Gaps = 38/227 (16%)
Query: 477 IQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQ-VTERFSVDWNLYLADNKDIV 535
N A V + + + +P +I GG +Q +++R S L +
Sbjct: 19 FSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGG--GYQHISQRESDPLALAFLA-QGYQ 75
Query: 536 VAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVT---------RYLQENLP--YIDKT 584
V L Y + + +N I+
Sbjct: 76 VL------------LLNY----TVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPE 119
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLE 644
+ + G S GG+ + + K I PVT + + + E
Sbjct: 120 QVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDLSHFNFEI------E 173
Query: 645 GYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 691
++ KV + H D+ V S+ L +
Sbjct: 174 NISEYNISEKVTS-STPPTFIWHTADDEGVPIYNSLKYCDRLSKHQV 219
Score = 40.6 bits (95), Expect = 0.001
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGL 770
+ H D+ V S+ L + F++ + HG+
Sbjct: 192 FIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHGV 233
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 52.6 bits (126), Expect = 2e-07
Identities = 29/219 (13%), Positives = 59/219 (26%), Gaps = 41/219 (18%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLAD---NKDIVVAYIDGRN 543
+F + PL + V+GG +Q + + + + VA +D
Sbjct: 72 VFYSEK----TTNQAPLFVFVHGG--YWQ---EMDMSMSCSIVGPLVRRGYRVAVMD--- 119
Query: 544 SALKGNTLKYAGYRRLGTV---EIYDQINV-TRYLQENLPYIDKTRTAIWGWSYGGYATG 599
Y V ++ Q ++ + + G G +
Sbjct: 120 ------------YNLCPQVTLEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLA 167
Query: 600 LALA------LDPSNVFKCGISVAPVTDW---IYYDTIYSERYMGLPTFEDNLEGYKIAA 650
L S + I + V D +++ + +GL + +
Sbjct: 168 QILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESVNPKNILGL-NERNIESVSPMLW 226
Query: 651 LNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 689
V + +V D +QS A L+
Sbjct: 227 EYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKK 265
Score = 32.2 bits (73), Expect = 0.51
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEH 768
+V D +QS A L+ + +H
Sbjct: 240 YVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDH 279
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 51.8 bits (124), Expect = 3e-07
Identities = 35/246 (14%), Positives = 69/246 (28%), Gaps = 41/246 (16%)
Query: 464 NITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQ-VTERFSV 522
N+ ++ + + AQ+ +L + P +I V GG S+ + +
Sbjct: 14 NLYFQGMQVIKQKLTAT-CAQLTGYLHQPDTNAHQTNLPAIIIVPGG--SYTHIPVAQAE 70
Query: 523 DWNLYLADNKDIVVAYIDGRNSALKGNTLKY---AGYRRLGTVEIYDQINVTRYLQENLP 579
+ A L+Y + LG + D L+++
Sbjct: 71 SLAMAFAG-HGYQAF------------YLEYTLLTDQQPLGLAPVLDLGRAVNLLRQHAA 117
Query: 580 --YIDKTRTAIWGWSYGGYATGLALALDPSNVF------------KCGISVAPVTDWIYY 625
+ID + G+S GG+ L + V + PV +
Sbjct: 118 EWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVISPLLG 177
Query: 626 DTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKS 685
A + V+ ++ + D V ++ A +
Sbjct: 178 FPKDDATLATWT------PTPNELAADQHVNS-DNQPTFIWTTADDPIVPATNTLAYATA 230
Query: 686 LQHADI 691
L A I
Sbjct: 231 LATAKI 236
Score = 40.6 bits (95), Expect = 0.001
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGL 770
+ D V ++ A +L A I ++ + HGL
Sbjct: 209 FIWTTADDPIVPATNTLAYATALATAKIPYELHVFKHGPHGL 250
>3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida
antarctica} PDB: 2veo_A*
Length = 462
Score = 51.1 bits (121), Expect = 1e-06
Identities = 44/333 (13%), Positives = 88/333 (26%), Gaps = 26/333 (7%)
Query: 445 TGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLL 504
+L Y TN T+ +P +P ++ D + P
Sbjct: 74 ASFQLQYRTTNTQNEAVADVATV------WIPAKPASPPKI-FSYQVYEDATALDCAPSY 126
Query: 505 IHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEI 564
++ G +VT + A + V D G + G
Sbjct: 127 SYLTGLDQPNKVTAVLDTPIIIGWALQQGYYVVSSDHE-----GFKAAFIAGYEEG---- 177
Query: 565 YDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIY 624
++ R L+ ++ A+ G+S G +AT A +L S + I V
Sbjct: 178 MAILDGIRALKNYQNLPSDSKVALEGYSGGAHATVWATSLAESYAPELNI-VGASHGGTP 236
Query: 625 YDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRD--KQYLLVHG-----TMDDNVHFQ 677
+ ++ ++ L+ + + L G +
Sbjct: 237 VSAKDTFTFLN-GGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCL 295
Query: 678 QSMMLAKSLQHADIMFQSQRYMGLPTFEDNLEGYKIAALNNKV-DRIRDKQYLLVHGTMD 736
++L + + + L+ + + + H D
Sbjct: 296 PQVVLTYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPD 355
Query: 737 DNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHG 769
+ V +Q + K YP EH
Sbjct: 356 EIVPYQPAATYVKEQCAKGANINFSPYPIAEHL 388
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 49.9 bits (118), Expect = 2e-06
Identities = 45/310 (14%), Positives = 81/310 (26%), Gaps = 34/310 (10%)
Query: 487 LFLPPGIDTSGHKKYPLL--------IHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAY 538
L +P G SG YPLL + + + + + VV
Sbjct: 67 LLIPGGERCSG--PYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLAS--QGYVVVG 122
Query: 539 IDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYI---DKTRTAIWGWSYGG 595
D L + Y Y E I+ R + L ++ + + G+S GG
Sbjct: 123 SDYLG--LGKSNYAYHPYL-HSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGG 179
Query: 596 YATG-----LALALDPSNVFKCGISVAPVTDWIYY--DTIYSERYMGLPTFEDNLEGYKI 648
+ + L ++ D+ +G TF L Y I
Sbjct: 180 HTAMATQREIEAHLSKEFHLVASAPISGPYALEQTFLDSWSGSNAVGENTFGILLGSYAI 239
Query: 649 AALNNKVDRIRDKQYLLVHGTMDDNVH--FQQSMMLAKSLQHADIM-FQSQRYMGLPTFE 705
A+ + I + + V F L + + + P F
Sbjct: 240 VAMQHTYKNIYLEPGQVFQDPWAAKVEPLFPGKQSLTDMFLNDTLPSIDKVKSYFQPGFY 299
Query: 706 DNLEGYKIAALNNKVDRIRDKQY------LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQ 759
+ + R ++ LL + D V + + S Q
Sbjct: 300 SDFPSNPANPFRQDLARNNLLEWAPQTPTLLCGSSNDATVPLKNAQTAIASFQQRGSNQV 359
Query: 760 SQTYPDEEHG 769
+ +
Sbjct: 360 ALVDTGTGNA 369
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-06
Identities = 119/691 (17%), Positives = 213/691 (30%), Gaps = 226/691 (32%)
Query: 125 LILSHNQ-ESDGSTPVDSWDHLTFIDLDDQAGIKDKVPVPLTRGRFTVTEILAWDERENN 183
L LSH E P S+ + L +Q +P P TE A D+
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIAS--QLQEQ--FNKILPEP--------TEGFAADDEP-- 54
Query: 184 PLLILSHNQESDGSTPVDSWDH-LTFI-DLDDQAGIKDKVPV-PLTRGRFTVTEILAWDE 240
+TP + L ++ L + + + V L F L
Sbjct: 55 -------------TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYL---- 96
Query: 241 KENNVEPVLSRVNWANESVVAAWVNRVQN--RARITRCSINEGTCDVVFSRDLDRGWFEP 298
+ N++ + +++ N++ + ++N ARI R + +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM----------------AKRPFDKK 140
Query: 299 FDH--LRFSSDGK-KMLLILSHNQESDGSTPVDSWDHLTFIDLDD-----QAGIKDKVPV 350
+ R +G +++ I Q G+T D + F +L D + D
Sbjct: 141 SNSALFRAVGEGNAQLVAIFG-GQ---GNT--DDY----FEELRDLYQTYHVLVGD---- 186
Query: 351 PLTRGRFTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSAN 410
L + L + F TQG I++ + +P+ TP+ D L S
Sbjct: 187 -LIKFSAETLSELIRTTLDAEKVF--TQGLNILEW-----LENPSNTPDK---DYLLSI- 234
Query: 411 QKCSYSGATFS------TNVSYYVLSCIGPGIPEIMLFDKT------GQRLLY------- 451
S +++YV++ G L Q L+
Sbjct: 235 --------PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 452 --WDT-NEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGI--DTSGH-KKYP--- 502
W++ +R A+T + ++ V EA LPP I D+ + + P
Sbjct: 287 DSWESFFVSVRKAITVLF-----FIGVRCY---EAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 503 LLIHVYGGPSSFQVTERFSVD-WNLYLADNKDIVVAYIDGRNS--------ALKGNTLKY 553
L I + QV + V+ N +L K + ++ ++G + +L G L
Sbjct: 339 LSIS---NLTQEQVQDY--VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT- 392
Query: 554 AGYRRLGTVEIYDQINV----------TRYLQENLP----YIDKTRTAIWGWSYGGYATG 599
R+ DQ + R+L P + I
Sbjct: 393 --LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD-----LVK 445
Query: 600 LALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFED--NLEGYKIAALNNKVDR 657
++ + I PV YDT D +L + +R
Sbjct: 446 NNVSFNAK---DIQI---PV-----YDT------------FDGSDLRVLS----GSISER 478
Query: 658 IRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGL-PTFEDNLEGYKIAAL 716
I D ++ V ++ + + H + F GL N +G +
Sbjct: 479 IVD---CIIR----LPVKWETTTQFKAT--HI-LDFGPGGASGLGVLTHRNKDGTGV--- 525
Query: 717 NNKVDRIRDKQYLLVHGTMD----DNVHFQQ 743
R+ +V GT+D D+ F+Q
Sbjct: 526 -----RV------IVAGTLDINPDDDYGFKQ 545
Score = 44.7 bits (105), Expect = 1e-04
Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 81/270 (30%)
Query: 357 FTVTEILAWDEKENNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYS 416
F++ +I+ + ++F +G I ++ Y I + + T + N+ +
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIREN-YSAMIFETIVDGKLKTEKIFKEINEHS--T 1715
Query: 417 GATFSTNVSYYVLSCIGPGIPEIMLFDKTG--QRLLY------WDTNEDLRTALTNITLP 468
TF + + +L T Q L + EDL++ I
Sbjct: 1716 SYTFRS--------------EKGLL-SATQFTQPALTLMEKAAF---EDLKSK-GLIPAD 1756
Query: 469 SV-------EY---------MSVPIQPNMEAQVKL---------FLPPGIDTSGHKKY-- 501
+ EY MS+ E+ V++ P D G Y
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSI------ESLVEVVFYRGMTMQVAVPR-DELGRSNYGM 1809
Query: 502 ----PLLIHVYGGPSSFQ-VTERFS--VDWNLYLA-DNKD---IVVAYIDGRNSALK--G 548
P + + Q V ER W + + N + V A G AL
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA---GDLRALDTVT 1866
Query: 549 NTLKYAGYRRLGTVEIYDQINVTRYLQENL 578
N L + +++ +E+ +++ ++ +L
Sbjct: 1867 NVLNFIKLQKIDIIELQKSLSLEE-VEGHL 1895
Score = 38.5 bits (89), Expect = 0.012
Identities = 50/296 (16%), Positives = 86/296 (29%), Gaps = 113/296 (38%)
Query: 11 SALWFSPSGNNLAYASFDDNRTVIMTIPFY-GNPGH--------PSSQYTQAINLRE--- 58
+A+ + + + + SF + +T+ F+ G + P S ++ E
Sbjct: 279 TAVAIAETDS---WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 59 -PVLSRVNWANESVVAAWVNRV------QNRARITRCSINEGTCDVV--FSRDLDR--GW 107
P+LS ++ + V +VN+ + I+ +N VV + L
Sbjct: 336 SPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISL--VNGAKNLVVSGPPQSLYGLNLT 392
Query: 108 FE-------------PFD------HLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLT-- 146
PF RF L + ++P S L
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRF-------LPV---------ASPFHS-HLLVPA 435
Query: 147 --FIDLDDQAGI-----KD-KVPVPLTR-GRFTVTEILAWDERENNPLLILSHNQE--SD 195
I+ D KD ++PV T G D R + +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGS---------DLRVLSGSISERIVDCIIRL 486
Query: 196 GSTPVDSWDHLT------FIDLD--DQAGIKDKVPVPLT------RGRFTVTEILA 237
PV W+ T +D +G+ LT G V I+A
Sbjct: 487 ---PVK-WETTTQFKATHILDFGPGGASGL-----GVLTHRNKDGTG---VRVIVA 530
Score = 35.4 bits (81), Expect = 0.095
Identities = 51/301 (16%), Positives = 88/301 (29%), Gaps = 118/301 (39%)
Query: 499 KKYP--LLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGY 556
P L IH +GG ++ E +S I +DG+ K K
Sbjct: 1666 INNPVNLTIH-FGGEKGKRIRENYS----------AMIFETIVDGKLKTEK--IFKEINE 1712
Query: 557 RRLGTVEIY----DQINVTRYLQENLPYIDKTRTAIW----------------GWSYGGY 596
T + ++ T++ Q P + A + G S G Y
Sbjct: 1713 H--STSYTFRSEKGLLSATQFTQ---PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 597 ATGLALA-----LDPSN----VFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYK 647
A ALA + + VF G+++ +P E Y
Sbjct: 1768 A---ALASLADVMSIESLVEVVFYRGMTMQVA----------------VPRDELGRSNYG 1808
Query: 648 IAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFE-- 705
+ A+N G + A S + + +R +G T
Sbjct: 1809 MIAIN--------------PGRV------------AASFSQEALQYVVER-VGKRTGWLV 1841
Query: 706 ----DNLEG--YKIA-------ALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ 752
N+E Y A + N ++ I+ ++ D + Q+S+ L +
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI--------DIIELQKSLSLEEVEG 1893
Query: 753 H 753
H
Sbjct: 1894 H 1894
Score = 34.6 bits (79), Expect = 0.14
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 48/181 (26%)
Query: 636 LPTFEDN-LEGYKI----AALNNKVDRIRDKQ------YLLVHGTMDDNVHFQQSMMLAK 684
L FE+ LEG I A L + D K Y+ + + L +
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 685 SLQ--HADIM--F--Q--SQRYMGLPTFEDNLEGYK-----IAALNNKVDRIRDKQYLLV 731
++ +A ++ F Q + Y FE+ + Y+ + L + + L+
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDY-----FEELRDLYQTYHVLVGDL---IKFSAETLSELI 199
Query: 732 HGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEH--------GLIGVR--PHFYHTL 781
T+D F Q + + + L++ PD+++ LIGV H+ T
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPS------NTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 782 E 782
+
Sbjct: 254 K 254
Score = 33.9 bits (77), Expect = 0.27
Identities = 34/216 (15%), Positives = 63/216 (29%), Gaps = 87/216 (40%)
Query: 17 PSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQYTQAINLREPVLSRVNWANESVVAAWV 76
P+G + + + + ++++ G P S Y + LR+ A
Sbjct: 361 PAGKQVEISLVNGAKNLVVS-------GPPQSLYGLNLTLRK-------------AKAPS 400
Query: 77 NRVQNRA----R----------ITR---CSINEGTCDVVFSRDLDRGWFEPFDH--LRF- 116
Q+R R + + D++ DL + F+ ++
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK-DLVKNNVS-FNAKDIQIP 458
Query: 117 ---SSDGKKMLLILSHNQESDGS-----------TPVDSWDHLT------FIDLD--DQA 154
+ DG + + GS PV W+ T +D +
Sbjct: 459 VYDTFDGSDL-------RVLSGSISERIVDCIIRLPVK-WETTTQFKATHILDFGPGGAS 510
Query: 155 GIKDKVPVPLT------RGRFTVTEILAWDERENNP 184
G+ LT G V I+A + NP
Sbjct: 511 GL-----GVLTHRNKDGTG---VRVIVA-GTLDINP 537
Score = 31.6 bits (71), Expect = 1.3
Identities = 33/206 (16%), Positives = 58/206 (28%), Gaps = 77/206 (37%)
Query: 563 EIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDW 622
++Y + + D +G+S L + +N PV
Sbjct: 1634 DLYKTSKAAQDVWNR---ADNHFKDTYGFS--------ILDIVINN---------PVNLT 1673
Query: 623 IYYD-----TIYSERYMGLPTFEDNLEGY-KIAALNNKVDRIRDKQYLLVH--GTMDDNV 674
I++ I E Y + FE ++G K + +++ Y G +
Sbjct: 1674 IHFGGEKGKRIR-ENYSAM-IFETIVDGKLKTEKIFKEINE-HSTSYTFRSEKGLLSAT- 1729
Query: 675 HFQQ------SMMLAKSLQ-------------H-----------ADIM-FQS------QR 697
F Q + L+ H AD+M +S R
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 698 YMGL------PTFEDNLEGYKIAALN 717
G+ P E Y + A+N
Sbjct: 1790 --GMTMQVAVPRDELGRSNYGMIAIN 1813
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 3e-06
Identities = 88/569 (15%), Positives = 165/569 (28%), Gaps = 173/569 (30%)
Query: 1 MFTEEVLSSSSALWF---------SPSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQYT 51
F EEVL + + PS Y D Y N ++Y
Sbjct: 81 KFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRD--------RLY-NDNQVFAKYN 130
Query: 52 QAINLREPVLSRVNWANE-----------------SVVAA-----------------WVN 77
++ +P L E + VA W+N
Sbjct: 131 --VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 78 RVQNRARITRCSINEGTCDVV--FSRDLDRGWFEPFDH-----------------LRFSS 118
+ C+ E +++ +D W DH L S
Sbjct: 189 -------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 119 DGKKMLLILSHNQESDGSTPVDSWDH-----LT--FIDLDDQAGIKDKVPVPLTRGRFTV 171
+ LL+L + Q + ++++ LT F + D + L T+
Sbjct: 242 PYENCLLVLLNVQNAK---AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 172 TE-----ILA-W------DERE----NNPLLI-LSHNQESDGSTPVDSWDHLTFIDLDD- 213
T +L + D NP + + DG D+W H+ L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 214 -QAGIKDKVPVPLTRGRFTVTEILAWDEKENNV-EPVLSRVNWAN--ESVVAAWVNRVQN 269
++ + P R F + ++ +LS + W + +S V VN++
Sbjct: 359 IESSLNVLEP-AEYRKMFDRLSVF---PPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHK 413
Query: 270 RARITRCSINEGTCDVVFSRDLDRGWFEPFDHLRFSSDGKKML--LILSHNQ-----ESD 322
+ + + E T + S L+ L+ + + L I+ H +SD
Sbjct: 414 YSLVEK-QPKESTI-SIPSIYLE---------LKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 323 GSTPVDSWD---------HLTFIDLDDQAGIKDKVPVPLTRGRFTVTEI----LAWDEKE 369
P D HL I+ ++ + V + RF +I AW+
Sbjct: 463 DLIP-PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAWNASG 518
Query: 370 NNVYFLSTQGSPIVQHMYRINIADPTATPECITCDLLTSANQKCSYSGATFSTNVSYYVL 429
+ + L Y+ I D E + +L F + ++
Sbjct: 519 SILNTLQQ------LKFYKPYICDNDPKYERLVNAIL------------DFLPKIEENLI 560
Query: 430 SCIGPGIPEIMLFDKTGQRLLYWDTNEDL 458
+ I L + ++ + ++ +
Sbjct: 561 CSKYTDLLRIALMAEDEA--IFEEAHKQV 587
Score = 42.9 bits (100), Expect = 5e-04
Identities = 39/287 (13%), Positives = 90/287 (31%), Gaps = 87/287 (30%)
Query: 494 DTSGHK-KYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLK 552
+T H+ +Y ++ V+ + F ++ D KD+ D S L +
Sbjct: 10 ETGEHQYQYKDILSVF--------EDAFVDNF-----DCKDV----QDMPKSILSKEEID 52
Query: 553 Y---------AGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALA 603
+ R T+ + V ++++E L + + + T
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-N------YKFLMSPIKT---EQ 102
Query: 604 LDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQY 663
PS + + I D +Y++ + L+ L + +R +
Sbjct: 103 RQPSMMTRMYIE--------QRDRLYNDNQVFAKYNVSRLQ--PYLKLRQALLELRPAKN 152
Query: 664 LLVHG---------------------TMDDNVHFQQSMMLAKSLQHADIMFQSQR----- 697
+L+ G MD + + + L ++ Q+
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQI 209
Query: 698 ---YMGLPTFEDNLEGYKIAALNNKVDR-IRDKQY---LLVHGTMDD 737
+ N++ +I ++ ++ R ++ K Y LLV + +
Sbjct: 210 DPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLV---LLN 252
Score = 39.8 bits (92), Expect = 0.004
Identities = 74/544 (13%), Positives = 161/544 (29%), Gaps = 163/544 (29%)
Query: 314 ILSHNQESDGSTPVDSWDHLTFI-DLDDQAGIKDKVPVPLTRGRFT---VTEILAWDEKE 369
ILS +++ F+ + D + ++D + + + + I+ +
Sbjct: 21 ILSVFEDA-------------FVDNFDCKD-VQD-----MPKSILSKEEIDHIIMSKDAV 61
Query: 370 NNVYFL----STQGSPIVQH----MYRIN---IADPTATPECITCDLLTSANQKCSYSGA 418
+ L ++ +VQ + RIN + P T E ++T
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYI--EQRDR 118
Query: 419 TFSTNVSYYVLSCIGPGIPEIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPIQ 478
++ N + + + + + K LR AL + +
Sbjct: 119 LYNDNQVFAKYN-----VSRLQPYLK-------------LRQALLEL------------R 148
Query: 479 PNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFS--VDW-NLYLADNKDIV 535
P V + G SG K + + V S++V + + W NL ++ + V
Sbjct: 149 P--AKNVLIDGVLG---SG--KTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 536 VAYIDGRNSALKGNTLKYAGYR---RLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWS 592
+ + + N + + +L I ++ R L+
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKP-------------- 242
Query: 593 YGGYATGLALALDPSNV----------FKCGISV----APVTDWI----YYDTIYSERYM 634
Y L L L NV C I + VTD++ M
Sbjct: 243 ---YENCL-LVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 635 GLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVH-------GTM--DDNVHFQQ------- 678
L D ++ + L+ + + ++ L + D +
Sbjct: 297 TLT--PDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 679 --SMMLAKSLQHADIMFQSQRYMGLPTFEDN-------LEGYKIAALNNKVDRIRDK--Q 727
+ ++ SL + + + L F + L + + V + +K +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 728 YLLVHGTMDDN---VHFQQSMMLAKSLQ----HADIMFQ---SQTYPDEEHGLIGVRPHF 777
Y LV ++ + + K H I+ +T+ ++ + +F
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 778 YHTL 781
Y +
Sbjct: 474 YSHI 477
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 46.3 bits (110), Expect = 1e-05
Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 17/142 (11%)
Query: 563 EIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTD- 621
EI D + Y++ + + G + GG + L P + K + +AP
Sbjct: 101 EIEDANAILNYVKTDPHV---RNIYLVGHAQGGVVASMLAGLYPDLI-KKVVLLAPAATL 156
Query: 622 ----------WIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQY--LLVHGT 669
+ Y+ + + +IA + L+HGT
Sbjct: 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGT 216
Query: 670 MDDNVHFQQSMMLAKSLQHADI 691
D V S + Q++ +
Sbjct: 217 DDTVVSPNASKKYDQIYQNSTL 238
Score = 30.9 bits (70), Expect = 1.5
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGL 770
L+HGT D V S + Q++ + +H
Sbjct: 211 CLIHGTDDTVVSPNASKKYDQIYQNSTL----HLIEGADHCF 248
>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural
genomics, PSI, structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 367
Score = 45.5 bits (107), Expect = 4e-05
Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 31/264 (11%)
Query: 487 LFLPPGIDTSGHKKYPLLI--HVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNS 544
L+LP + P ++ +G V E+ S + +A+ + +A+ D +
Sbjct: 85 LYLPKNRGG---DRLPAIVIGGPFGA-----VKEQSSGLYAQTMAERGFVTLAF-DPSYT 135
Query: 545 ALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALAL 604
G + + D ++ LP +++ R + G G A+A+
Sbjct: 136 GESGGQPRNVAS---PDINTEDFSAAVDFIS-LLPEVNRERIGVIGICGWGGMALNAVAV 191
Query: 605 DPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDK--- 661
D K ++ + S+ Y T E + R +D
Sbjct: 192 DKR--VKAVVTSTMYDM----TRVMSKGYNDSVTLEQRTRTLEQLG----QQRWKDAESG 241
Query: 662 QYLLVHGTMDDNVHFQQSMMLAKS--LQHADIMFQSQRYMGLPTFEDNLEGYKIAALNNK 719
+ Q ++ + ++ T L + L
Sbjct: 242 TPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNMPILTY- 300
Query: 720 VDRIRDKQYLLVHGTMDDNVHFQQ 743
+ I + LL+HG + +F +
Sbjct: 301 IKEISPRPILLIHGERAHSRYFSE 324
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 45.2 bits (107), Expect = 4e-05
Identities = 30/233 (12%), Positives = 59/233 (25%), Gaps = 42/233 (18%)
Query: 479 PNMEAQVKLFLPPGI-DTSGHKKYPLLIHVYGGPSSFQ-VTERFSVDWNLYLADNKDIVV 536
Q+ + I D YP++I GG F + R + +
Sbjct: 12 AAHPFQITAYWLDQISDFETAVDYPIMIICPGG--GFTYHSGREEAPIATRMMA-AGMHT 68
Query: 537 AYIDGRNSALKGNTLKY---AGYRRLGTVEIYDQINVTRYLQENLP--YIDKTRTAIWGW 591
L Y G + + + ++ ++D R + G+
Sbjct: 69 V------------VLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGF 116
Query: 592 SYGGYATGLALAL-------------DPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPT 638
S GG+ + I PV D S +
Sbjct: 117 SAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQIT- 175
Query: 639 FEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 691
++ A V K + D++V S+ +++ +
Sbjct: 176 -----TDARLWAAQRLVTP-ASKPAFVWQTATDESVPPINSLKYVQAMLQHQV 222
Score = 40.6 bits (95), Expect = 0.001
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLIGVRPHFYHT 780
+ D++V S+ +++ + + HGL + H
Sbjct: 195 FVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHGL-ALANHVTQK 245
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 44.1 bits (104), Expect = 9e-05
Identities = 35/331 (10%), Positives = 78/331 (23%), Gaps = 74/331 (22%)
Query: 469 SVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVD-WNLY 527
++Y + + + ++++++GG + + +
Sbjct: 3 EIKYKVIT-KDAFALPYTIIKA-----KNQPTKGVIVYIHGG--GLMFGKANDLSPQYID 54
Query: 528 LADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTV----EIYDQINVTRYLQENLPYIDK 583
+ ++ YR L V I D +Q
Sbjct: 55 ILTEHYDLIQ----------------LSYRLLPEVSLDCIIEDVYASFDAIQSQY---SN 95
Query: 584 TRTAIWGWSYGGY-ATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDN 642
+G S G Y + +A D V T+ Y +
Sbjct: 96 CPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQSINETMI 155
Query: 643 LEGYKIAALNNKVDRIRDKQYLLVHGTMD--DNVHFQQSMMLAKSLQHADIMFQSQRYMG 700
+ + R Y+ GT + ++ ++ +
Sbjct: 156 AQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDE-------LKT 208
Query: 701 LPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQS 760
LP + H D +V ++S + + H+
Sbjct: 209 LPPV------------------------FIAHCNGDYDVPVEESEHIMNHVPHSTF---- 240
Query: 761 QTYPDEEHGLIGVRP----HFYHTLERFLDS 787
+ EH Y + FL++
Sbjct: 241 ERVNKNEHDFDRRPNDEAITIYRKVVDFLNA 271
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 44.0 bits (104), Expect = 1e-04
Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 19/173 (10%)
Query: 466 TLPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLI--H-VYGGPSSFQ---VTER 519
+ ++ Y S A+V +LPPG KKY +L H + G + +
Sbjct: 31 QVVNISYFSTATNSTRPARV--YLPPGYSKD--KKYSVLYLLHGIGGSENDWFEGGGRAN 86
Query: 520 FSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLP 579
D + K +++ + + G Y + + + Y++ N
Sbjct: 87 VIADNLIAEGKIKPLIIVTPNTNAAG-PGIADGYENFTKDLLNSLIP------YIESNYS 139
Query: 580 YI-DKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSE 631
D+ AI G S GG + + L + F ++ + + ++ +
Sbjct: 140 VYTDREHRAIAGLSMGGGQS-FNIGLTNLDKFAYIGPISAAPNTYPNERLFPD 191
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 43.7 bits (102), Expect = 2e-04
Identities = 50/365 (13%), Positives = 99/365 (27%), Gaps = 40/365 (10%)
Query: 418 ATFSTNVSYYVLSCIGPGIPEIMLFDKTGQRLLYWDTNEDLRTALTNITLPSVEYMSVPI 477
FS + L + P + +D ++ Y + D + +++PI
Sbjct: 15 GEFSRETAEIALKKMPPLDTLTVHYDLQLYKINYKTQSPD------GNLTIASGLVAMPI 68
Query: 478 QPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVA 537
P + + + T + S + + + +
Sbjct: 69 HPVGQVGIISYQHG---TRFERNDV---------PSRNNEKNYIYLAAYGNS--AGYMTV 114
Query: 538 YIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYA 597
D TL D + + L L Y + + G+S GG++
Sbjct: 115 MPDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFS 174
Query: 598 TGLALALDPSN----VFKCGISVAPVTDWIYY-DTIYSERYMGLPTFEDNLEGYKIAALN 652
T + + + W + E + Y +L
Sbjct: 175 TIVMFEMLAKEYPDLPVSAVAPGSAPYGWEETMHFVMLEPGPRATAY----LAYFFYSLQ 230
Query: 653 ------NKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFED 706
+ D I Y + + D H +L Q ++FQ + G+ + D
Sbjct: 231 TYKSYWSGFDEIFAPPYNTLIPELMDGYHA-VDEILQALPQDPLLIFQPKFSNGIISKTD 289
Query: 707 NLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ--HADIMFQSQTYP 764
+ N D LLV D +V + + M S + + +S
Sbjct: 290 R-NTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSDFVWIKS-VSD 347
Query: 765 DEEHG 769
+H
Sbjct: 348 ALDHV 352
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 42.3 bits (99), Expect = 4e-04
Identities = 29/184 (15%), Positives = 54/184 (29%), Gaps = 34/184 (18%)
Query: 461 ALTNITLPSVEYMSVPIQP-NMEAQVKLFLPPGIDTSGHKKYPLLI--HVYGGPSSFQVT 517
T+IT + + + + + LP G S + YP++ G F
Sbjct: 3 TSTSITAVEYQSKRLESRLLKETREYVIALPEGYAQS-LEAYPVVYLLD---GEDQFDHM 58
Query: 518 ERFSVDWNLYLADNKDIVVAYIDG-------------RNSALKGNTLKYAGYRRLGTVEI 564
+ + L I I G L Y+ G
Sbjct: 59 ASL-LQF-LSQGTMPQIPKVIIVGIHNTNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGR 116
Query: 565 YDQINVTRYLQENL-PYIDKT-----RTAIWGWSYGGYATGLALALDPSNVFKCGISVAP 618
+ ++++ L P I+ + G S+GG AL D +F +++
Sbjct: 117 F-----LDFIEKELAPSIESQLRTNGINVLVGHSFGGLVAMEALRTDR-PLFSAYLALDT 170
Query: 619 VTDW 622
+
Sbjct: 171 SLWF 174
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 41.4 bits (97), Expect = 5e-04
Identities = 36/253 (14%), Positives = 74/253 (29%), Gaps = 51/253 (20%)
Query: 456 EDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQ 515
ED R +L + ++ Y + LFLP G L + V+GG +
Sbjct: 29 EDFRNSLQDRARLNLSYGEGDRH-----KFDLFLPEG------TPVGLFVFVHGG--YWM 75
Query: 516 VTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINV-TRYL 574
++ S A +K VA + EI QI+
Sbjct: 76 AFDKSSWSHLAVGALSKGWAVAMPSYEL------------CPEVRISEITQQISQAVTAA 123
Query: 575 QENLPYIDKTRTAIWGWSYGGYATGLALA-----LDPSNVFKCGISVAPVTDWIYYDTIY 629
+ + + G S GG+ L + + ++P++D
Sbjct: 124 AKEID----GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS 179
Query: 630 SERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQ-- 687
+ + + + +R D + + G + Q++ L ++
Sbjct: 180 MNEKFKM-----DADAAIAESPVEMQNR-YDAKVTVWVGGAERPAFLDQAIWLVEAWDAD 233
Query: 688 --------HADIM 692
H +++
Sbjct: 234 HVIAFEKHHFNVI 246
>3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha
sandwich, structural genomics, PSI-2; 1.83A {Bordetella
parapertussis 12822}
Length = 304
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 26/214 (12%)
Query: 469 SVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYL 528
++ Y+ + + + P G P+++ +G + + W
Sbjct: 26 AIPYLDDDRNADRPFTLNTYRPYGYT----PDRPVVVVQHGVLRNG---ADYRDFWIPAA 78
Query: 529 ADNKDIVVA------YIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYID 582
+K ++VA G S G AG R Y + D
Sbjct: 79 DRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIAD 138
Query: 583 KTRTAIWGWSYGGYATGLALALDP-SNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFED 641
+ ++G S GG ++ P + + ++ + E G+ ED
Sbjct: 139 CEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTED 198
Query: 642 NLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVH 675
+L R+ ++ G D
Sbjct: 199 HLA------------RLLAYPMTILAGDQDIATD 220
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 40.4 bits (94), Expect = 0.001
Identities = 31/223 (13%), Positives = 57/223 (25%), Gaps = 48/223 (21%)
Query: 499 KKYPLLIHVYGG----PSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYA 554
+I+++GG P + + + + I+
Sbjct: 39 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIE-------------- 84
Query: 555 GYRRLGTVE----IYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVF 610
YR + +YD ++ L + T + G S G LA
Sbjct: 85 -YRLSPEITNPRNLYDAVSNITRLVKE---KGLTNINMVGHSVGATFIWQILAALKDPQE 140
Query: 611 KCGISVAPVTD-------WIYYDTIY----------SERYMGLPTFEDNLEGYKIAALNN 653
K + + D IY F D ++ Y+
Sbjct: 141 KMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRV 200
Query: 654 KVDRIRDKQ-----YLLVHGTMDDNVHFQQSMMLAKSLQHADI 691
+ LVH D+ + +Q+ L LQ +
Sbjct: 201 MPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQL 243
Score = 33.8 bits (77), Expect = 0.19
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHG 769
LVH D+ + +Q+ L LQ + F+ H
Sbjct: 216 HLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A
virulence facto LUNG infection; HET: MSE; 1.7A
{Streptococcus pneumoniae}
Length = 263
Score = 39.3 bits (92), Expect = 0.003
Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 44/232 (18%)
Query: 480 NMEAQVKLFLPPG--IDTSGHKKYPLLI--HVYGGPSSFQVTERFSVDWNLY-----LAD 530
+ME V + P ++ + P+L H G W L
Sbjct: 18 DMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSG------NHN---SWLKRTNVERLLR 68
Query: 531 NKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYI--DKTRTAI 588
+++V + N + Y L E+ L+ P + + +T I
Sbjct: 69 GTNLIVVMPNTSNGWYTDTQYGFDYYTAL-AEELPQ------VLKRFFPNMTSKREKTFI 121
Query: 589 WGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLEG--- 645
G S GGY LAL N F S + + + + +G P + + G
Sbjct: 122 AGLSMGGYGC-FKLALTT-NRFSHAASFSGALSF--QNFSPESQNLGSPAYWRGVFGEIR 177
Query: 646 ------YKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 691
Y + +L K D + + G D + ++ + + K+L+
Sbjct: 178 DWTTSPYSLESLAKKSD--KKTKLWAWCGE-QDFL-YEANNLAVKNLKKLGF 225
>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll,
selenomethionine; 1.90A {Xanthomonas citri} SCOP:
b.18.1.13 c.69.1.21
Length = 615
Score = 40.1 bits (93), Expect = 0.003
Identities = 30/241 (12%), Positives = 66/241 (27%), Gaps = 30/241 (12%)
Query: 563 EIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDW 622
D + +L +N+ + + + G SY G+ T + +P K + +P+ D
Sbjct: 124 HATDAWDTIDWLVKNVSESNG-KVGMIGSSYEGF-TVVMALTNPHPALKVAVPESPMIDG 181
Query: 623 IYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMML 682
D ++ F+ +K + D+
Sbjct: 182 WMGDDWFNYGAFRQVNFDY------FTGQLSKRGKGAGIAR-----QGHDDYSNFLQAGS 230
Query: 683 AKSLQHADIMFQSQRYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQ 742
A A + Q + L ++ AL+ + R K + + D
Sbjct: 231 AGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQALDKVMARTPLKVPTMWLQGLWDQEDMW 290
Query: 743 QSMMLAKSLQ-----------------HADIMFQSQTYPDEEHGLIGVRPHFYHTLERFL 785
++ +++ H+ + + R + L F
Sbjct: 291 GAIHSYAAMEPRDKRNTLNYLVMGPWRHSQVNYDGSALGALNFEGDTARQFRHDVLRPFF 350
Query: 786 D 786
D
Sbjct: 351 D 351
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 39.2 bits (91), Expect = 0.004
Identities = 15/151 (9%), Positives = 39/151 (25%), Gaps = 22/151 (14%)
Query: 561 TVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVT 620
T V +LQ + S ++ + + V +
Sbjct: 87 TTGKNSLCTVYHWLQTK----GTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLR 142
Query: 621 DWI----------------YYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQY- 663
D + D + +G F + + L++ +D++ +
Sbjct: 143 DTLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVP 202
Query: 664 -LLVHGTMDDNVHFQQSMMLAKSLQHADIMF 693
+ DD V ++ + ++
Sbjct: 203 LIAFTANNDDWVKQEEVYDMLAHIRTGHCKL 233
Score = 30.7 bits (69), Expect = 1.7
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 697 RYMGLPTFEDNLEGYKIAALNNKVDRIRDKQY--LLVHGTMDDNVHFQQSMMLAKSLQHA 754
+G F + + L++ +D++ + + DD V ++ + ++
Sbjct: 170 HKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRTG 229
Query: 755 DIMFQSQTYPDEEHGL 770
S H L
Sbjct: 230 HCKLYS--LLGSSHDL 243
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 38.6 bits (89), Expect = 0.008
Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 34/207 (16%)
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLE 644
+ A+ G SY G A + ++ A ++ W Y+ + P +
Sbjct: 341 KVAMTGKSYLGT-MAYGAATTGVEGLELILAEAGISSW--YNYYRENGLVRSPGGFPGED 397
Query: 645 GYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTF 704
+AAL R D L + + + L + + + + Y+
Sbjct: 398 LDVLAALTY--SRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYL----- 450
Query: 705 EDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD----IMFQ- 759
N + K L+VHG D NV +Q+ K+L + +
Sbjct: 451 -INTDKVKADV-------------LIVHGLQDWNVTPEQAYNFWKALPEGHAKHAFLHRG 496
Query: 760 SQTYPDEEHGLIGVRPHFYHTLERFLD 786
+ Y + F T+ +
Sbjct: 497 AHIYMNS-----WQSIDFSETINAYFV 518
>3iii_A COCE/NOND family hydrolase; structural genomics, center for
structural genomi infectious diseases, csgid; HET: MSE
PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*
Length = 560
Score = 37.0 bits (85), Expect = 0.027
Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 14/152 (9%)
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFEDNLE 644
G SY T +A K I + D Y + + + G+P
Sbjct: 162 NIGTNGVSYLAV-TQWWVASLNPPHLKAMIPWEGLNDM-YREVAF---HGGIPDTGFYRF 216
Query: 645 GYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTF 704
+ + + + ++Q + ++ + S GL
Sbjct: 217 WTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQVPLSQIKTPLLTCASWSTQGLHNR 276
Query: 705 EDNLEGYKIAALNNKVDRIRDKQYLLVHGTMD 736
+ EG+K AA ++++L VHG +
Sbjct: 277 G-SFEGFKQAA--------SEEKWLYVHGRKE 299
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 36.2 bits (83), Expect = 0.030
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 579 PYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPV 619
ID +R A+ G S GG T + P K I + P
Sbjct: 162 NRIDASRLAVMGHSMGGGGTLRLASQRPD--LKAAIPLTPW 200
>2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation,
hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum}
SCOP: c.69.1.37 PDB: 2d80_A*
Length = 318
Score = 36.4 bits (83), Expect = 0.030
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 13/118 (11%)
Query: 581 IDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISV---APV---TDWIYYDTIYSERYM 634
++ ++ G + GGY L + S+VF G V P + Y +Y+
Sbjct: 8 VNPNSVSVSGLASGGYMAA-QLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYN---- 62
Query: 635 GLPTFEDNLEGYKIAALNN--KVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD 690
G P+ K + N V + ++ + G+ D V L L + D
Sbjct: 63 GYPSITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFD 120
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad,
alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus}
SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Length = 652
Score = 36.3 bits (83), Expect = 0.040
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFE 640
R + G SY G+ T + LDP K +P+ D D + F+
Sbjct: 158 RVGMTGSSYEGF-TVVMALLDPHPALKVAAPESPMVDGWMGDDWFHYGAFRQGAFD 212
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 35.2 bits (81), Expect = 0.057
Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 40/191 (20%)
Query: 593 YGGYAT---GLALALDPSNVFKCGISV-APVTDWIYYDTIYSERYMGLPTFEDNLEGYKI 648
GG LA +D +SV V + + G+ ED +
Sbjct: 47 TGGNELDLLPLAEIVDSEASV---LSVRGNVLENGMP-RFFRRLAEGIFDEEDLIFR--T 100
Query: 649 AALNNKVDRIRDKQYLLVHGTMDDNVHF----QQSMMLAKSLQH-----ADIMFQSQRYM 699
LN +D + + +N+ + + A L H +
Sbjct: 101 KELNEFLDEAAKE-----YKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVP 155
Query: 700 GLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQ 759
NL G + + GT D +S L L++A+
Sbjct: 156 RRGMQLANLAGKSV---------------FIAAGTNDPICSSAESEELKVLLENANANVT 200
Query: 760 SQTYPDEEHGL 770
H L
Sbjct: 201 MHWENR-GHQL 210
>2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST
initiative, midwest center for structural genomics,
MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579}
Length = 275
Score = 35.3 bits (81), Expect = 0.060
Identities = 36/249 (14%), Positives = 69/249 (27%), Gaps = 45/249 (18%)
Query: 463 TNITLPSVEYMSVPIQP-NMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQ-VTERF 520
I + E + + E Q+ + P YP++ V G + FQ E
Sbjct: 11 QQIITSNTEQWKMYSKLEGKEYQIHISKPKQPAPD--SGYPVIY-VLDGNAFFQTFHEAV 67
Query: 521 SVDWNLYLADNKD--IVVA-----------------YIDGRNSALKGNTLKYAGYRRLGT 561
+ I+V + S + + G
Sbjct: 68 KIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKTGG 127
Query: 562 VEIYDQI---NVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAP 618
+ + +++N IDK + ++G GG L + N F+ +P
Sbjct: 128 AHNFFTFIEEELKPQIEKNFE-IDKGKQTLFGHXLGGLFALHILFTNL-NAFQNYFISSP 185
Query: 619 VTDWIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQ 678
W + + E I N K + L G+++
Sbjct: 186 SIWWNN------------KSVLEKEENLIIELNNAK----FETGVFLTVGSLEREHMVVG 229
Query: 679 SMMLAKSLQ 687
+ L++ L
Sbjct: 230 ANELSERLL 238
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 34.0 bits (78), Expect = 0.11
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGL 770
HGT D+ V + L+ + + ++P+ H L
Sbjct: 174 FQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHEL 215
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 34.2 bits (78), Expect = 0.16
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 25/138 (18%)
Query: 572 RYLQENL-PYIDKT--------RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDW 622
+Q+ L P + RT + G S+GG + L L F C +S + W
Sbjct: 255 LAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSA-LYAGLHWPERFGCVLSQSGSYWW 313
Query: 623 IYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMML 682
+ G LE K ++ + RI L G + + + + L
Sbjct: 314 ---------PHRGGQQEGVLLEKLKAGEVSAEGLRI----VLEA-GIREPMI-MRANQAL 358
Query: 683 AKSLQHADIMFQSQRYMG 700
L ++ G
Sbjct: 359 YAQLHPIKESIFWRQVDG 376
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP:
c.69.1.16
Length = 262
Score = 33.9 bits (77), Expect = 0.17
Identities = 27/164 (16%), Positives = 46/164 (28%), Gaps = 26/164 (15%)
Query: 469 SVEYMSVP-IQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLY 527
+ SV + + ++ P + ++ G F +
Sbjct: 24 ATSQTSVSSLVASGFGGGTIYYPTSTAD---GTFGAVVISPG----FTAYQSSIAWLGPR 76
Query: 528 LADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLP---YIDKT 584
LA + VV ID TL R ++ YL + +D T
Sbjct: 77 LAS-QGFVVFTIDTNT------TLDQPDSR------GRQLLSALDYLTQRSSVRTRVDAT 123
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTI 628
R + G S GG + A S K I + + +
Sbjct: 124 RLGVMGHSMGGGGSLEAAKSRTS--LKAAIPLTGWNTDKTWPEL 165
>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive
mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP:
c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*
Length = 297
Score = 33.9 bits (77), Expect = 0.17
Identities = 21/162 (12%), Positives = 49/162 (30%), Gaps = 14/162 (8%)
Query: 469 SVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLI--HVYGGPSSFQVTERFSVDWNL 526
+ + N + ++LP G D + KKY + H G + + + L
Sbjct: 40 RIVKETYT-GINGTKSLNVYLPYGYDPN--KKYNIFYLMHGGGENENTIFSNDVKLQNIL 96
Query: 527 -YLADNKDI---VVAYIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYID 582
+ N ++ +V + R + + T I
Sbjct: 97 DHAIMNGELEPLIVVTPTFNGGNCTAQ--NFYQEFRQNVIPFVESKYSTYAESTTPQGIA 154
Query: 583 KTR--TAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDW 622
+R G++ GG T + ++ + + ++ +
Sbjct: 155 ASRMHRGFGGFAMGGLTT-WYVMVNCLDYVAYFMPLSGDYWY 195
>3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat
esterase family 15 (CE-15), N-linked glycosylation,
secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina}
Length = 375
Score = 33.7 bits (76), Expect = 0.20
Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 16/197 (8%)
Query: 447 QRLLYWDTNEDLRTALTNITLPSVEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIH 506
QR T + + ++ ++ V + P YP +I
Sbjct: 56 QRYELGTLPGRPSTLTASFSGNTLTINCGEAGKSISFTVTITYPSSGT----APYPAIIG 111
Query: 507 VYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSALKGNTLKYAGYRRLGTV--EI 564
GG S ++ +N +I G K L Y G +
Sbjct: 112 YGGG--SLPAPAGVAM----INFNNDNIAAQVNTGSRGQGKFYDL-YGSSHSAGAMTAWA 164
Query: 565 YDQINVTRYLQENLPY-IDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWI 623
+ V L+ ID T+ + G S G +A A + +
Sbjct: 165 WGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEKR--IVLTLPQESGAGGS 222
Query: 624 YYDTIYSERYMGLPTFE 640
I +
Sbjct: 223 ACWRISDYLKSQGANIQ 239
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 33.0 bits (75), Expect = 0.27
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 30/132 (22%)
Query: 570 VTRYLQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIY 629
+ +++ N + G+S G + ++ +F +
Sbjct: 127 MADFIKANREHYQAGPVIGLGFSNGA-NILANVLIEQPELFDAAVL-------------M 172
Query: 630 SERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHA 689
P ++ L+ G D Q + L +SL+
Sbjct: 173 HPLIPFEPKISPAKPTRRV---------------LITAGERDPICPVQLTKALEESLKAQ 217
Query: 690 DIMFQSQRY-MG 700
++ + G
Sbjct: 218 GGTVETVWHPGG 229
Score = 32.2 bits (73), Expect = 0.53
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 721 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLIGVRPHFYHT 780
++ L+ G D Q + L +SL+ ++ +P H +R
Sbjct: 184 PAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GH---EIRSGEIDA 239
Query: 781 LERFLDSCFA 790
+ FL +
Sbjct: 240 VRGFLAAYGG 249
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 32.9 bits (75), Expect = 0.30
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 4/58 (6%)
Query: 566 DQINVTRYLQENLPYIDKTRTAIWGWSYGGY-ATGLALAL-DPSNVFKCGISVAPVTD 621
+ L E I + G S GGY L L + + ++ TD
Sbjct: 80 TLTETFQLLNEE--IIQNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTD 135
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL;
1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A*
3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A
1l7q_A 1l7r_A
Length = 587
Score = 33.0 bits (75), Expect = 0.40
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 1/45 (2%)
Query: 585 RTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIY 629
++G SY G A + K D
Sbjct: 110 NVGMFGVSYLGVTQWQAAVSGVGGL-KAIAPSMASADLYRAPWYG 153
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 32.6 bits (73), Expect = 0.42
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 20/132 (15%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKDIVVAYIDGRNSAL 546
+ P L++ +GG + + ++ L + I IDG
Sbjct: 47 YWSPAEG-----SSDRLVLLGHGGTTH---KKVEYIEQVAKLLVGRGISAMAIDGPGHGE 98
Query: 547 KGNTLKYAGYRRLGTVEIYDQINVTRYLQENL------------PYIDKTRTAIWGWSYG 594
+ + + ++ + ++ + T WG S G
Sbjct: 99 RASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEEGPRPTGWWGLSMG 158
Query: 595 GYATGLALALDP 606
A D
Sbjct: 159 TMMGLPVTASDK 170
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 32.1 bits (73), Expect = 0.45
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 721 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGL 770
++ DK L + D V + L L+ + + H L
Sbjct: 145 VQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSL-GHQL 193
Score = 30.1 bits (68), Expect = 1.8
Identities = 15/121 (12%), Positives = 29/121 (23%), Gaps = 30/121 (24%)
Query: 581 IDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFE 640
+D + G+S G L + L F I + +
Sbjct: 99 LDVHKMIAIGYSNGANVA-LNMFLRGKINFDKII-------------AFHGMQLEDFEQT 144
Query: 641 DNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY-M 699
L+ + L + D V + L L+ + + +
Sbjct: 145 VQLDDKHV---------------FLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESSL 189
Query: 700 G 700
G
Sbjct: 190 G 190
>3llc_A Putative hydrolase; structural genomics, joint center for ST
genomics, JCSG, protein structure initiative, PSI-2;
HET: MSE PG4; 1.80A {Agrobacterium vitis}
Length = 270
Score = 32.4 bits (73), Expect = 0.46
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 622 WIYYDTIYSERYMGLPTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMM 681
+ E + ++ ++ A ++ G D +V +Q ++
Sbjct: 172 FEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTG----CPVHILQGMADPDVPYQHALK 227
Query: 682 LAKSLQHADI 691
L + L D+
Sbjct: 228 LVEHLPADDV 237
Score = 31.2 bits (70), Expect = 1.3
Identities = 8/91 (8%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 666 VHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGLPTFEDNLEGYKIAALNNKVDRIRD 725
+++ + + + + ++ ++ A
Sbjct: 151 SDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTG---- 206
Query: 726 KQYLLVHGTMDDNVHFQQSMMLAKSLQHADI 756
++ G D +V +Q ++ L + L D+
Sbjct: 207 CPVHILQGMADPDVPYQHALKLVEHLPADDV 237
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 32.8 bits (75), Expect = 0.48
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 19/153 (12%)
Query: 2 FTEEVLSSSSALW-----FSPSGNNLAYASFDDNRTVIMTIPFYGNPGHPSSQYTQAINL 56
F S W FSPSGN LAYA D +V + Y + + + L
Sbjct: 195 FNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS--SVTI---AYPSAPEQPPRALITVKL 249
Query: 57 RE-PVLSRVNWANE-SVVAA------WVNRVQNRARITRCSINEGTCDVVFSRDLDRGWF 108
+ P+ S + WANE ++VAA + + ++ GT F+ + G
Sbjct: 250 SQLPLRS-LLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEG 308
Query: 109 EPFDHLRFSSDGKKMLLILSHNQESDGSTPVDS 141
+ + + + S + + +
Sbjct: 309 REEEGPVSFTALRSTFRNMDLKGSSQSISSLPT 341
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 31.4 bits (71), Expect = 0.80
Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 17/126 (13%)
Query: 487 LFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLAD--NKD-IVVAYIDGRN 543
L +P G +++ +G SS R+S N Y+A+ + + ID
Sbjct: 28 LVIPNG-------ATGIVLFAHGSGSS-----RYS-PRNRYVAEVLQQAGLATLLIDLLT 74
Query: 544 SALKGNTLKYAGYRRLGTVEIYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYATGLALA 603
+ L+ R + + T +L N P + +G S GG A +A A
Sbjct: 75 QEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHN-PDTQHLKVGYFGASTGGGAALVAAA 133
Query: 604 LDPSNV 609
P V
Sbjct: 134 ERPETV 139
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 31.3 bits (71), Expect = 0.82
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 12/102 (11%)
Query: 697 RYMGLPTFEDNLEGY--------KIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLA 748
+ ++ L G + L +HG DD V
Sbjct: 121 FHTAFINWQGPLGGVIALSTYAPTFGDELELSASQQRIPALCLHGQYDDVVQNAMGRSAF 180
Query: 749 KSLQHADIMFQSQTYPDEEHGLIGVRPHFYHTLERFLDSCFA 790
+ L+ + Q YP H V P H + +L +
Sbjct: 181 EHLKSRGVTVTWQEYPM-GH---EVLPQEIHDIGAWLAARLG 218
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.84
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 8/24 (33%)
Query: 481 MEAQVKLFLPPGIDTSGHKKYPLL 504
++A +KL+ D++ P L
Sbjct: 25 LQASLKLYAD---DSA-----PAL 40
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP,
serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo
sapiens}
Length = 446
Score = 31.8 bits (71), Expect = 1.0
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 541 GRNSALKGNTLKYAGYRRLGTVE--IYDQINVTRYLQENLPYIDKTRTAIWGWSYGGYAT 598
G + N+ K + + T E + D + ++L+ +P + G SYGG
Sbjct: 81 GESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLA 140
Query: 599 GLALALDPSNVFKCGISVAPV 619
P V + AP+
Sbjct: 141 AWFRMKYPHMVVGALAASAPI 161
>3d59_A Platelet-activating factor acetylhydrolase; secreted protein,
alpha/beta-hydrolase-fold, LDL-bound, lipoprotein
associated phospholipase A2, LP-PLA2; 1.50A {Homo
sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A*
Length = 383
Score = 31.4 bits (70), Expect = 1.2
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 580 YIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTF 639
ID+ + A+ G S+GG L+ D F+CGI++ W++ + P F
Sbjct: 215 SIDREKIAVIGHSFGGATVIQTLSEDQR--FRCGIALDA---WMFPLGDEVYSRIPQPLF 269
Query: 640 EDNLEGYKIAALNNKVDRI----RDKQYLLVHGTMDDNVHFQQSMM 681
N E ++ A K+ + ++++ + + G+ VH +
Sbjct: 270 FINSEYFQYPANIIKMKKCYSPDKERKMITIRGS----VHQNFADF 311
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 30.7 bits (69), Expect = 1.3
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 728 YLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLIGVRPHFYHTLERFLDS 787
+VH D+ + + A++ ++ D+ H L L S
Sbjct: 122 ISIVHAWHDELIPAADVIAWAQARSARLLLV------DDGHRLGAHVQAASRAFAELLQS 175
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 30.5 bits (69), Expect = 2.0
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGLIGVRPH-FYHTLERFLDS 787
L+V G V ++ P +H + V P + F+D+
Sbjct: 259 LIVRGESSKLVSAAALAKTSRLRPDL----PVVVVPGADHYVNEVSPEITLKAITNFIDA 314
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic
DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38
PDB: 2gzr_A*
Length = 278
Score = 30.4 bits (68), Expect = 2.4
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 31/160 (19%)
Query: 484 QVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVTERFSVDWNLYLADNKD----IVVAY- 538
+V +P + YP+L + G + D L K + V Y
Sbjct: 28 RVWTAVPNTTAPA--SGYPILY-MLDGNAVMDRL----DDELLKQLSEKTPPVIVAVGYQ 80
Query: 539 ------IDGRN-------SALKGNTLKYAGYRRLGTVEIYDQINVTR---YLQENLPYID 582
++ R + K + R+ G + Q+ TR +++ L ID
Sbjct: 81 TNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLN-ID 139
Query: 583 KTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDW 622
+ R +WG SYGG + F+ S +P
Sbjct: 140 RQRRGLWGHSYGGLFVLDSWLSSS--YFRSYYSASPSLGR 177
>1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine
hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo
sapiens} SCOP: c.69.1.14
Length = 232
Score = 30.1 bits (68), Expect = 2.5
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMF--QSQTYPDEEHGL 770
L HG D V + + L+ +TY H
Sbjct: 169 LQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSS 212
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 29.7 bits (67), Expect = 2.8
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 729 LLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYP 764
L +HG+ DD V +LQ + YP
Sbjct: 170 LHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP 205
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 30.2 bits (69), Expect = 2.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 9 SSSALWFSPSGNNLAYASFDDNRTV 33
++ L +P+G+ + Y + TV
Sbjct: 20 TAVVLGNTPAGDKIQYCNGTSVYTV 44
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structu initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 29.6 bits (66), Expect = 4.2
Identities = 21/135 (15%), Positives = 33/135 (24%), Gaps = 38/135 (28%)
Query: 95 CDVVFSRDLDRGWFEPFDHLRFSSDGKKMLLILSHNQESDGSTPVDSWDHLTFIDLDDQA 154
D+V ++ D L++ H+ D T V D D
Sbjct: 64 QDLVMTK-----------------DDN---LVVLHDHYLDRVTDVA--DRFPDRARKDGR 101
Query: 155 G-IKDKVPVPLTRGRFTVTEILAWDERENNPLLILSHNQESDGSTPVDSWD-----HLTF 208
D FT+ EI + E + Q G P+ D
Sbjct: 102 YYAID----------FTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEE 151
Query: 209 IDLDDQAGIKDKVPV 223
I+ +
Sbjct: 152 IEFVQGLNHSTGKNI 166
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca
cleavage, DNA damage, DNA repair, DNA replication,
DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Length = 196
Score = 29.0 bits (66), Expect = 4.9
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 529 ADNKDIVVAYIDGRNSALKGNTLKYAGYRRLG 560
A N DIV A +DG TL + + G
Sbjct: 138 AQNGDIVAAMVDG------EVTLAK--FYQRG 161
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 29.4 bits (66), Expect = 4.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 15 FSPSGNNLAYASFDDNRTVIM 35
+SP G+ LAY +F+ R+ ++
Sbjct: 186 WSPDGSKLAYVTFESGRSALV 206
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; 2.70A {Mycobacterium tuberculosis}
SCOP: c.69.1.3
Length = 304
Score = 29.1 bits (65), Expect = 5.8
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 37/168 (22%)
Query: 470 VEYMSVPIQPNMEAQVKLFLPPGIDTSGHKKYPLLIHVYGGPSSFQVT--------ERFS 521
VEY+ VP P+M +K+ G P L + G + + +
Sbjct: 9 VEYLQVP-SPSMGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWY 62
Query: 522 VDWNLYLADNKDIVVA--------YIDGRNSALKGNTLKYAGYRRLGTVEIYDQINVTRY 573
L VV Y D A + + T E + +
Sbjct: 63 DQSGL-------SVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSE------LPGW 109
Query: 574 LQENLPYIDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTD 621
LQ N + T +A+ G S + L LA+ F +++ + D
Sbjct: 110 LQANRH-VKPTGSAVVGLSMAASSA-LTLAIYHPQQFVYAGAMSGLLD 155
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 28.7 bits (64), Expect = 6.4
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 721 DRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQTYPDEEHGL 770
+ + L++ G D+ + L L ++ P H +
Sbjct: 154 TDLAGIRTLIIAGAADE-TYGPFVPALVTLLSRHGAEVDARIIPS-GHDI 201
Score = 28.3 bits (63), Expect = 8.0
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 31/121 (25%)
Query: 581 IDKTRTAIWGWSYGGYATGLALALDPSNVFKCGISVAPVTDWIYYDTIYSERYMGLPTFE 640
++ G+S G +L L + + + P D + + G+ T
Sbjct: 108 LNLDHATFLGYSNGANLV-SSLMLLHPGIVRLAALLRP---MPVLDHVPATDLAGIRTL- 162
Query: 641 DNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRY-M 699
++ G D+ + L L ++
Sbjct: 163 ------------------------IIAGAADE-TYGPFVPALVTLLSRHGAEVDARIIPS 197
Query: 700 G 700
G
Sbjct: 198 G 198
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.2 bits (62), Expect = 8.7
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 613 GISVAPVTDWIYYDTIYSERYMGLPTFEDNLEGYKI-AALNNKVDRIRDKQYLLV 666
G+++ + Y + E + +I + L + + K++L++
Sbjct: 117 GMAIQ-----VNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVI 166
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 28.6 bits (65), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 225 LTRGRFTVTEILAWDEKENNV 245
LT GRF VT+I+ ++ E+ +
Sbjct: 24 LTEGRFGVTDIVGFNHSEDEL 44
Score = 28.6 bits (65), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 352 LTRGRFTVTEILAWDEKENNV 372
LT GRF VT+I+ ++ E+ +
Sbjct: 24 LTEGRFGVTDIVGFNHSEDEL 44
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 28.5 bits (64), Expect = 9.2
Identities = 21/174 (12%), Positives = 53/174 (30%), Gaps = 17/174 (9%)
Query: 585 RTAIWGWSYGGYATGLALALD-PSNVFK--CGISVAPVTDWIYYDTIYSERYMGLPTFED 641
+ G S GG L A + ++ K G + A + D+IY + +
Sbjct: 92 KWGFAGHSAGG-MLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVS 150
Query: 642 NLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHADIMFQSQRYMGL 701
+ + + + +++ L+ ++ + + + + Y
Sbjct: 151 IMNALNDDSTVQEERKALSREWALMSFYSEEKLEEALKLPNS-----GKTVGNRLNYFRQ 205
Query: 702 PTFEDNLEGYKIAALNNKVDRIRDKQYLLVHGTMDDNVHFQQSMMLAKSLQHAD 755
++D K+ + + G D + S +A + +A
Sbjct: 206 VEYKDYDVRQKLKFVKIPS--------FIYCGKHDVQCPYIFSCEIANLIPNAT 251
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia
coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A*
3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Length = 202
Score = 28.0 bits (63), Expect = 9.9
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 6/25 (24%)
Query: 529 ADNKDIVVAYIDGRNSALKGNTLKY 553
N +VVA ID T+K
Sbjct: 139 VRNGQVVVARIDD------EVTVKR 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,623,244
Number of extensions: 778008
Number of successful extensions: 1844
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1729
Number of HSP's successfully gapped: 145
Length of query: 790
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 689
Effective length of database: 3,881,772
Effective search space: 2674540908
Effective search space used: 2674540908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.9 bits)