BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4634
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRT-CSTLSG 69
I ++P+E + E +F A Y SS E ++ E+ L + ST S
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G VR++ IA L+ P L ILDEPTSGLD + A + L++ S G TI++++H + E
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 209
Query: 130 R-QANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
+ + L+ G ++ + EEL Y ++EEVF
Sbjct: 210 EFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVF 246
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 9/148 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS----T 66
IG + Q AL+ T E F + ++S EE R +++E+ ++LD+ H +
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI---HHVLNHFPRE 140
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHY 125
LSGGQ +RV++A L+ PSL++LDEP S LD + ++ + S G T+++ +H
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
+ A+ VG++ KG L+ PE+L
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYA-SLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
+G + Q LF T+ + + E+ AK EL + + L H +LS
Sbjct: 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLS 161
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
GGQ +RV+IA L P +++ DEPTS LDP + ++++++ G T+++ TH +
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEEL 152
AR+ + V M G ++ E PE+L
Sbjct: 222 AREVGDRVLFMDGGYIIEEGKPEDL 246
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYA-SLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
+G + Q LF T+ + + E+ AK EL + + L H +LS
Sbjct: 81 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLS 140
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
GGQ +RV+IA L P +++ DEPTS LDP + ++++++ G T+++ TH +
Sbjct: 141 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 200
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEEL 152
AR+ + V M G ++ E PE+L
Sbjct: 201 AREVGDRVLFMDGGYIIEEGKPEDL 225
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 9/148 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS----T 66
IG + Q AL+ T E F + ++S EE R +++E+ ++LD+ H +
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI---HHVLNHFPRE 140
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHY 125
LSG Q +RV++A L+ PSL++LDEP S LD + ++ + S G T+++ +H
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
+ A+ VG++ KG L+ PE+L
Sbjct: 201 PADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
+G + Q AL+ T+ + F L + EE K++E+ ++L + +R LSG
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA L+ P +++LDEP S LD +L L+R+ G T + TH E
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196
Query: 129 A-RQANVVGLMRKGVLLAEKSPEEL 152
A A+ + ++R+G +L +P+E+
Sbjct: 197 ALAMADRIAVIREGEILQVGTPDEV 221
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 9/164 (5%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE-VLDLPP 59
+T SL S +IG +PQ+T LF++ TIA+ ++ E A+ + + ++ P
Sbjct: 121 VTQASLRS-HIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPE 178
Query: 60 DHRTCS-----TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
+RT LSGG+ +RV+IA T+L P +++LDE TS LD L ++ +
Sbjct: 179 GYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA 238
Query: 115 NGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
N +T I+ H + A+ + +++ G ++ E L++ GV
Sbjct: 239 N-RTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGV 281
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEF--RAKMKELQEVLDLPPDHRTC---- 64
+G + QE LFD +IAE + + +S EE AK + + +D PD
Sbjct: 1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD + L + + G+T I+
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVI 1226
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + + A+++ +++ G + + ++L+A G+
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGI 1262
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE---VLDLPPDHRTC--- 64
IG + QE LF TIAE ++ ++ +E +KE ++ LP T
Sbjct: 466 IGVVSQEPVLFAT-TIAENIRY--GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD L + + G+T I+
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVI 581
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + R A+V+ GV++ + + +EL+ G+
Sbjct: 582 AHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGI 617
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEF--RAKMKELQEVLDLPPDHRTC---- 64
+G + QE LFD +IAE + + +S EE AK + + +D PD
Sbjct: 1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD + L + + G+T I+
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVI 1226
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + + A+++ +++ G + + ++L+A G+
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGI 1262
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE---VLDLPPDHRTC--- 64
IG + QE LF TIAE ++ ++ +E +KE ++ LP T
Sbjct: 466 IGVVSQEPVLFAT-TIAENIRY--GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD L + + G+T I+
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVI 581
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + R A+V+ GV++ + + +EL+ G+
Sbjct: 582 AHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGI 617
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-KMKELQEVLDLPPDH------RT 63
IG +PQ+T LF+E TI Y L E +A K +L + ++ P
Sbjct: 95 IGIVPQDTILFNE-TIKYNI-LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123
LSGG+ +R++IA LL P +VI DE TS LD + F + ++ + N +T+II
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIA 211
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
H + A + L+ KG ++ + + ++L+ G
Sbjct: 212 HRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG 245
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRR 74
Q AL+ T+ + F L ++ +E +++E+ E+L L +R LSGGQ +R
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR 147
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTH-YIEEARQA 132
V++ ++ P + ++DEP S LD L L+++ G T I TH +E
Sbjct: 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG 207
Query: 133 NVVGLMRKGVLLAEKSPEEL 152
+ + +M +GVL SP+E+
Sbjct: 208 DRIAVMNRGVLQQVGSPDEV 227
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQ-----EVLDLPPDHR 62
S I F + LF ++ + F A ++ +E R ++ E L P H
Sbjct: 85 SIGIVFQDPDNQLFSA-SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTH- 142
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIII 121
C LS GQ +RV+IA L+ P ++ILDEPT+GLDPM + L M G TIII
Sbjct: 143 -C--LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 122 TTHYIE-EARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
TH I+ + V +M++G ++ + +P+E+ A V + +V LRL
Sbjct: 200 ATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEV--IRKVNLRL 245
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +RVSIA L P +++ DEPTS LDP L + +Q+++ G+T+++ TH +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 127 EEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
AR ++ V + +G + E PE++ +
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTL 67
I F+ Q +LF + + +F + +I + + L DL +H R TL
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK-----RVLDTARDLKIEHLLDRNPLTL 128
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYI 126
SGG+ +RV++A L+ P +++LDEP S LDP + L + N T++ TH
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ 188
Query: 127 EEAR-QANVVGLMRKGVLLAEKSPEEL 152
EAR A+ + ++ G L+ PEE+
Sbjct: 189 TEARIMADRIAVVMDGKLIQVGKPEEI 215
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 20/140 (14%)
Query: 4 TSLGSTYIGFMPQETALFDEFTIAET------FQFYASLYRISSEEFRA------KMKEL 51
T + IGF+ Q+ L T E F++ ++ S EE R KM EL
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM---SGEERRKRALECLKMAEL 134
Query: 52 QEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR 111
+E +H+ + LSGGQ +RV+IA L + P +++ D+PT LD Q L++
Sbjct: 135 EERF---ANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 112 MS-SNGQTIIITTHYIEEAR 130
++ +G+T+++ TH I AR
Sbjct: 191 LNEEDGKTVVVVTHDINVAR 210
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD 60
M T +G + Q AL+ ++AE F L E ++ ++ EVL L
Sbjct: 67 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-- 124
Query: 61 H---RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-G 116
H R LSGGQ +RV+I TL+ PS+ +LDEP S LD L + R+ G
Sbjct: 125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 117 QTIIITTHYIEEA 129
+T+I TH EA
Sbjct: 185 RTMIYVTHDQVEA 197
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD 60
M T +G + Q AL+ ++AE F L E ++ ++ EVL L
Sbjct: 67 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-- 124
Query: 61 H---RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-G 116
H R LSGGQ +RV+I TL+ PS+ +LDEP S LD L + R+ G
Sbjct: 125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 117 QTIIITTHYIEEA 129
+T+I TH EA
Sbjct: 185 RTMIYVTHDQVEA 197
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD 60
M T +G + Q AL+ ++AE F L E ++ ++ EVL L
Sbjct: 67 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-- 124
Query: 61 H---RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-G 116
H R LSGGQ +RV+I TL+ PS+ +LD+P S LD L + R+ G
Sbjct: 125 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 117 QTIIITTHYIEEA 129
+T+I TH EA
Sbjct: 185 RTMIYVTHDQVEA 197
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 14/137 (10%)
Query: 4 TSLGSTYIGFMPQETALFDEFTIAETFQFYASL-YR--ISSEEFRA------KMKELQEV 54
T + IGF+ Q+ L T E + YR +S EE R KM EL+E
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137
Query: 55 LDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS- 113
+H+ + LSGGQ +RV+IA L + P +++ D+PT LD Q L++++
Sbjct: 138 F---ANHKP-NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 114 SNGQTIIITTHYIEEAR 130
+G+T+++ TH I AR
Sbjct: 194 EDGKTVVVVTHDINVAR 210
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 9 TYIGFMPQETALFDEFTIAETFQFYAS-LYRISSEEFRAKMKELQEVL----DLPPDHRT 63
+ IG + QE LF +IAE + A +++EE + ++ E+ + + P T
Sbjct: 449 SKIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQ-RVAEVANAVAFIRNFPQGFNT 506
Query: 64 CST-----LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT 118
LSGGQ +R++IA LL P +++LDE TS LD + + L R+ +G+T
Sbjct: 507 VVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRT 565
Query: 119 IIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154
+++ H++ + AN+V ++ +G + EEL++
Sbjct: 566 VLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 4 TSLGSTYIGFMPQETALFDEFTIAETFQFYASL-YR--ISSEEFRAKMKELQEVLDLP-- 58
T + IGF+ Q+ L T E + YR S EE R + E + +L
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEER 137
Query: 59 -PDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNG 116
+H+ + LSGGQ +RV+IA L + P +++ DEPT LD Q L++++ +G
Sbjct: 138 FANHKP-NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 117 QTIIITTHYIEEAR 130
+T+++ TH I AR
Sbjct: 197 KTVVVVTHDINVAR 210
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 13/156 (8%)
Query: 9 TYIGFMPQETALFDEFTIAETFQFYAS-LYRISSEEFRAKMKELQEVL----DLPPDHRT 63
+ IG + QE LF +IAE + A +++EE + ++ E+ + + P T
Sbjct: 418 SKIGTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQ-RVAEVANAVAFIRNFPQGFNT 475
Query: 64 CST-----LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT 118
LSGGQ +R++IA LL P +++LDE TS LD + + L R+ +G+T
Sbjct: 476 VVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRT 534
Query: 119 IIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154
+++ H + + AN+V ++ +G + EEL++
Sbjct: 535 VLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ G+T+II H +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 198
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIA 154
+ A+ + +M KG ++ + +EL++
Sbjct: 199 STVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ G+T+II H +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 204
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIA 154
+ A+ + +M KG ++ + +EL++
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ G+T+II H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 200
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIA 154
+ A+ + +M KG ++ + +EL++
Sbjct: 201 STVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ G+T+II H +
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 200
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIA 154
+ A+ + +M KG ++ + +EL++
Sbjct: 201 STVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
Query: 11 IGFMPQETALFDEFTIAET--FQFYASLYRISSEEFRAKMKELQE-VLDLPPDHRT---- 63
I + QE LFD +IAE + S ++ E A++ + + +LP T
Sbjct: 1155 IAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGD 1213
Query: 64 -CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD + L R + G+T I+
Sbjct: 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVI 1272
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
H + A+ + ++ G ++ + + +L++ G
Sbjct: 1273 AHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKG 1307
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA--KMKELQEVLD-LPPDHRTC--- 64
+ + QE ALF+ TI E I+ EE A KM ++ + LP + T
Sbjct: 494 VAVVSQEPALFN-CTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGD 550
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD Q L + ++ G+T II
Sbjct: 551 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-AAKGRTTIII 609
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + R A+++ + G ++ L+A G+
Sbjct: 610 AHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGL 645
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
+G + Q ALF T+ + F R+ +E A+++EL + L +R LSG
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSG 148
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV++A L P +++ DEP + +D + +++++ G T + TH EE
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157
A + A+ V ++ +G + +PEE+ G
Sbjct: 209 ALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTL 67
+G + Q AL+ T+ E F RIS +E ++ E+ L + D+ R + L
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI--DNLLDRKPTQL 134
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYI 126
SGGQ +RV++A L+ P +++ DEP S LD L ++ + G T + TH
Sbjct: 135 SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ 194
Query: 127 EEA-RQANVVGLMRKGVLLAEKSPEELIAS 155
EA A+ + + +G L+ +P+E+ S
Sbjct: 195 AEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L++ P ++I D+ TS LD H + + ++ G+T+II H +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAHRL 204
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIA 154
+ A+ + +M KG ++ + +EL++
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRT-CSTLSG 69
IG + Q L T+ L +E + ++ EL ++ L H + S LSG
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 143
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA L P +++ DE TS LDP + L+ ++ G TI++ TH ++
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIA 154
++ + V ++ G L+ + + E+ +
Sbjct: 204 VKRICDCVAVISNGELIEQDTVSEVFS 230
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRR 74
Q AL+ T+ + F L ++ +E +++E+ E L L +R LSGGQ +R
Sbjct: 91 QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQR 150
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTH-YIEEARQA 132
V++ ++ P + + DEP S LD L L+++ G T I TH +E
Sbjct: 151 VALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXG 210
Query: 133 NVVGLMRKGVLLAEKSPEEL 152
+ + + KG L +P+E+
Sbjct: 211 DRIAVXNKGELQQVGTPDEV 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGG+ RRV+IA ++H P ++ILDEP GLD + +++ + G+T+I+ +H I
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 127 EEA-RQANVVGLMRKGVLLAEKSPEELIASY 156
E + V ++ KG + + + E + Y
Sbjct: 199 ETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGG+ RRV+IA ++H P ++ILDEP GLD + +++ + G+T+I+ +H I
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 127 EEA-RQANVVGLMRKGVLLAEKSPEELIASY 156
E + V ++ KG + + + E + Y
Sbjct: 201 ETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 231
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRT-CSTLSG 69
IG + Q L T+ L +E + ++ EL ++ L H + S LSG
Sbjct: 107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 166
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA L P +++ D+ TS LDP + L+ ++ G TI++ TH ++
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 226
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIA 154
++ + V ++ G L+ + + E+ +
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 25 TIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS-TLSGGQVRRVSIAVTLLH 83
T+ E F + + E R ++K++ E++ L LSGGQ +R++IA L
Sbjct: 98 TVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLAR 157
Query: 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
+ LDEP S LDP +Q L+ + + G+ II+ TH +E
Sbjct: 158 DTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELE 201
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R LSGGQ++ V I L+ P ++++DEP +G+ P LAH + ++ + + G T +I
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 208
Query: 122 TTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
H ++ + + +M G ++AE EE I +
Sbjct: 209 IEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R LSGGQ++ V I L+ P ++++DEP +G+ P LAH + ++ + + G T +I
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLI 208
Query: 122 TTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
H ++ + + +M G ++AE EE I +
Sbjct: 209 IEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ G+T+II +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAARL 198
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIA 154
+ A+ + +M KG ++ + +EL++
Sbjct: 199 STVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ G+T+II +
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAARL 204
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIA 154
+ A+ + +M KG ++ + +EL++
Sbjct: 205 STVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 15/138 (10%)
Query: 25 TIAETFQFYASLYRISSEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSIAVTLLH 83
T+ + F+AS+ +I + K++ L +V L + +TLSGG+ +RV +A L
Sbjct: 808 TVEDALDFFASIPKI-----KRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHR 862
Query: 84 TP---SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV----- 135
+L ILDEPT+GL L R+ NG T+++ H ++ + A+ +
Sbjct: 863 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGP 922
Query: 136 -GLMRKGVLLAEKSPEEL 152
G R G ++A +PEE+
Sbjct: 923 EGGDRGGQIVAVGTPEEV 940
Score = 44.3 bits (103), Expect = 6e-05, Method: Composition-based stats.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 3 ATSLGSTYIG-----FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEV-LD 56
A +G +IG + + A FD + E A + R+ E R ++ LQ V LD
Sbjct: 438 AVLVGGKHIGEVTAXSVTEALAFFDGLELTEK---EAQIARLILREIRDRLGFLQNVGLD 494
Query: 57 LPPDHRTCSTLSGGQVRRVSIAVTLLH--TPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R+ TLSGG+ +R+ +A + T L +LDEP+ GL L+
Sbjct: 495 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRD 554
Query: 115 NGQTIIITTHYIEEARQANVV------GLMRKGVLLAEKSPEEL 152
G T+I+ H + A+ + + G ++A +PEE+
Sbjct: 555 LGNTLIVVEHDEDTXLAADYLIDIGPGAGIHGGEVVAAGTPEEV 598
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSIAVTL 81
+ T+ + F+AS+ +I + K++ L +V L + +TLSGG+ +RV +A L
Sbjct: 504 DMTVEDALDFFASIPKI-----KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 558
Query: 82 LHTP---SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV--- 135
+L ILDEPT+GL L R+ NG T+++ H ++ + A+ +
Sbjct: 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDL 618
Query: 136 ---GLMRKGVLLAEKSPEEL 152
G R G ++A +PEE+
Sbjct: 619 GPEGGDRGGQIVAVGTPEEV 638
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 19 ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSI 77
A FD + E A + R+ E R ++ LQ V LD R+ TLSGG+ +R+ +
Sbjct: 157 AFFDGLELTEK---EAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRL 213
Query: 78 AVTLLH--TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
A + T L +LDEP+ GL L+ M G T+I+ H
Sbjct: 214 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRR 74
Q A++ T+ E F + + +E +++ E+L + +R + LSGGQ +R
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 149
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ--TIIITTHYIEEARQA 132
V++A ++ P ++++DEP S LD L ++++ + TI +T +E
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 209
Query: 133 NVVGLMRKGVLLAEKSPEEL 152
+ + +M +G LL SP E+
Sbjct: 210 DRIAVMNRGQLLQIGSPTEV 229
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRR 74
Q A++ T+ E F + + +E +++ E+L + +R + LSGGQ +R
Sbjct: 91 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 150
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ--TIIITTHYIEEARQA 132
V++A ++ P ++++DEP S LD L ++++ + TI +T +E
Sbjct: 151 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 210
Query: 133 NVVGLMRKGVLLAEKSPEEL 152
+ + +M +G LL SP E+
Sbjct: 211 DRIAVMNRGQLLQIGSPTEV 230
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE-VLDLPPDH-----RT 63
+I +PQET LF TI E ++ AK+ ++ + ++ LP + R
Sbjct: 418 HISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123
SGGQ +R+SIA L+ P ++ILD+ TS +DP+ L+R + G T I T
Sbjct: 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIIT 535
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELI 153
I A A+ + ++ +G + + +EL+
Sbjct: 536 QKIPTALLADKILVLHEGKVAGFGTHKELL 565
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRT-CSTLSG 69
IG + Q L T+ L +E + ++ EL ++ L H + S LSG
Sbjct: 107 IGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 166
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA L P +++ D+ TS LDP + L+ ++ G TI++ TH +
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDV 226
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIA 154
++ + V ++ G L+ + + E+ +
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVFS 253
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R LSGGQ++ V I L+ P ++++D+P +G+ P LAH + ++ + + G T +I
Sbjct: 149 RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLI 208
Query: 122 TTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
H ++ + + +M G ++AE EE I +
Sbjct: 209 IEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSIAVTL 81
+ T+ + F+AS+ +I + K++ L +V L + +TLSGG+ +RV +A L
Sbjct: 806 DMTVEDALDFFASIPKI-----KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 860
Query: 82 LHTP---SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV--- 135
+L ILDEPT+GL L R+ NG T+++ H ++ + A+ +
Sbjct: 861 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDL 920
Query: 136 ---GLMRKGVLLAEKSPEEL 152
G R G ++A +PEE+
Sbjct: 921 GPEGGDRGGQIVAVGTPEEV 940
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 19 ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSI 77
A FD + E A + R+ E R ++ LQ V LD R+ TLSGG+ +R+ +
Sbjct: 459 AFFDGLELTEK---EAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRL 515
Query: 78 AVTLLH--TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
A + T L +LDEP+ GL L+ M G T+I+ H
Sbjct: 516 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE-VLDLPPDHRT-----C 64
IG + Q+ LF + T+ E AKM + +++LP + T
Sbjct: 417 IGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGGQ +R+SIA L+ P ++ILDE TS LD + L +S + +T +I H
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-RTTLIVAH 534
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
+ A+ + ++ G ++ + ELIA G
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHRELIAKQG 567
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA LL ++ILDE TS LD L + N +++I H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRL 539
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
QA+ + ++ G+++ + EL+A +GV
Sbjct: 540 STIEQADEIVVVEDGIIVERGTHSELLAQHGV 571
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
+G++ QE LF T+ + + + + R +++ + E+ + R LSG
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSG 141
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ-YLQRMSSNGQTIIITTHYIEE 128
GQ +R ++A L P L++LDEP S LD L + + + +NG++ + +H EE
Sbjct: 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREE 201
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEEL 152
A Q A+ + +M++G +L SP EL
Sbjct: 202 ALQYADRIAVMKQGRILQTASPHEL 226
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 21 FDEFTIAETFQFYASLYRISSEE--FRAKMKELQEVLDLPPD--------HRTCSTLSGG 70
F E +I+E +F +L E +KE+++ L+ D R+ +TLSGG
Sbjct: 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGG 468
Query: 71 QVRRVSIAVTLLH--TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
+ +R+ +A + T + +LDEPT GL P + L+++ G T+I+ H E
Sbjct: 469 ESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
Query: 129 ARQAN 133
R A+
Sbjct: 529 IRNAD 533
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 65 STLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
+TLSGG+ +R+ +A L +L ILDEPT GL + L R+ G T+I+
Sbjct: 804 TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV 863
Query: 122 TTHYIEEARQANVV------GLMRKGVLLAEKSPEEL 152
H ++ + A+ + G G ++A +PEE+
Sbjct: 864 IEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYAS--LYRISSEEFRAKMKELQEVLDLPPDHRTC--- 64
+ + Q LF++ TIA + A R E+ + ++ + ++P T
Sbjct: 418 HFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
++LSGGQ +RV+IA LL ++ILDE TS LD L + N +T+++
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVI 535
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
H + QA+ + ++ +G ++ +L+A G
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-----HRTCS 65
I +P+ +F E T+ E + R E + ++L+ + L P +
Sbjct: 83 IALVPEGRRIFPELTVYENL-XXGAYNRKDKEGIK---RDLEWIFSLFPRLKERLKQLGG 138
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
TLSGG+ + ++I L P L+ DEP+ GL P+L ++ +Q+++ G TI++
Sbjct: 139 TLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 13 FMPQETALFDEFTIAETFQFYASLY--RISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
F+P+E + + ++ + + ASLY +++ E ++ + EVLDL + LS G
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-EVLDL---KKKLGELSQG 137
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+RRV +A TLL + +LD+P +D H + + + +II++
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA LL ++ILDE TS LD L + N +++I H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI-AHRL 539
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
+A+ + ++ GV++ + +L+ GV
Sbjct: 540 STIEKADEIVVVEDGVIVERGTHNDLLEHRGV 571
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 11/151 (7%)
Query: 11 IGFMPQETALFDEFT----IAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCST 66
IGF+PQ+ ALF + IA + + R A+ + +LD P +
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----AR 126
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII--ITTH 124
LSGG+ +RV++A L+ P L++LDEP S +D + L+ + I +T
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
IE A A+ V +M G ++ + +EL ++
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 47 KMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFW 106
K EL+ VL+ R LSGG+++RV+IA LL + DEP+S LD
Sbjct: 144 KALELENVLE-----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 107 QYLQRMSSNGQTIIITTH 124
+ ++R+S G+++++ H
Sbjct: 199 RAIRRLSEEGKSVLVVEH 216
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
R + LSGG+++RV+IA TLL + +LDEP++ LD
Sbjct: 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 4 TSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE---VLDLPPD 60
+SL S+ IG + Q+T LF T+ E ++ + EE + K + LP
Sbjct: 425 SSLRSS-IGIVLQDTILFST-TVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEG 480
Query: 61 HRTCST-----LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYFWQYLQR 111
+ T T LS GQ + ++I L P ++ILDE TS +D + W+ ++
Sbjct: 481 YETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME- 539
Query: 112 MSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
G+T II H + + A+++ ++R G ++ +ELI G
Sbjct: 540 ----GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R LSGG+ +RV+IA L + P L+ DEPT LD +++ G +I++
Sbjct: 136 RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195
Query: 122 TTHYIEEARQANVVGLMRKGVLLAE 146
TH E A + M+ G ++ E
Sbjct: 196 VTHERELAELTHRTLEMKDGKVVGE 220
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 9 TYIGFMPQETALFDEFTIAETFQF-------YASLYRISSEEF-RAKMKELQEVLDLPPD 60
+ IGF+ Q++A+ TI E + L+++ F R+ ++ + + L+
Sbjct: 76 SQIGFVSQDSAIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG 134
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
R +SGGQ +R++IA L P +++LDE T+ LD + L + G+T +
Sbjct: 135 ERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-MKGRTTL 192
Query: 121 ITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156
+ H + A+ + + KG + EL+A++
Sbjct: 193 VIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 11 IGFMPQ--ETALFDEFTIAETFQFYASLY--RISSEEFRAKMKELQEVLDLPPDHRTCS- 65
I +PQ + +L + E F+ + R S E K E ++ L P+ S
Sbjct: 92 IALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSY 151
Query: 66 --TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIIT 122
LSGG +RV IA+ LL P ++ILDEPTS LD + AH + T+I
Sbjct: 152 PLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFV 211
Query: 123 THYIEEARQ-ANVVGLMRKGVLL 144
TH I A + A+ V ++ G L+
Sbjct: 212 THDIAVAAELADKVAVIYGGNLV 234
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R LSGG+++RV+IA LL DEP+S LD + ++R+++ G+ +++
Sbjct: 210 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 269
Query: 122 TTH 124
H
Sbjct: 270 VEH 272
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
+ + PQ E T+ E S +++S ++ ++ + ++DL R LSGG
Sbjct: 405 VAYKPQYIKAEYEGTVYELLSKIDS-SKLNSNFYKTELLKPLGIIDLY--DRNVEDLSGG 461
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTHYI 126
+++RV+IA TLL + +LDEP++ LD + ++ M N +T ++ H +
Sbjct: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLH-TPS------LVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R+ + LSGG+ +RV +A +L TP L++LDEP + LD + L +S
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQ 181
Query: 115 NGQTIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEELI 153
G I+ ++H + R A+ L++ G LA EE++
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R LSGG+++RV+IA LL DEP+S LD + ++R+++ G+ +++
Sbjct: 224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLV 283
Query: 122 TTH 124
H
Sbjct: 284 VEH 286
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTII 120
R LSGG+++RV+IA TLL + +LDEP++ LD + ++ M N +T +
Sbjct: 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
Query: 121 ITTHYI 126
+ H +
Sbjct: 527 VVEHDV 532
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 23/157 (14%)
Query: 24 FTIAETFQFYASLYRISSEEFRAKMKELQEV----LDLPPDHRTCSTLSGGQVRRVSIAV 79
T+ E F+A I FRA + L+EV L L + + LSGG+ +R+ +A
Sbjct: 692 LTVDEAHDFFADESAI----FRA-LDTLREVGLGYLRL---GQPATELSGGEAQRIKLAT 743
Query: 80 TLLHTP---SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136
L + ++ +LDEPT+GL P + L ++ G T+I H ++ ++ V
Sbjct: 744 ELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803
Query: 137 LMRKGV------LLAEKSPEELIASYGVDSLEEVFLR 167
+ G L+A+ +P E+ + G S+ +LR
Sbjct: 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG--SVTAPYLR 838
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHT--PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI 119
R+ TLS G+++R+ +A L + +LDEP++GL P L+ + G ++
Sbjct: 375 RSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434
Query: 120 IITTHYIEEARQAN 133
+ H ++ R+A+
Sbjct: 435 FVVEHDLDVIRRAD 448
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLH-TPS------LVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R+ + LSGG+ +RV +A +L TP L++LDEP + LD + L +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQ 181
Query: 115 NGQTIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEELI 153
G I+ ++H + R A+ L++ G LA EE++
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVL 221
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 43 EFRAKMKELQEVLDLPPDHRTCST---LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
+F+ M+E +L +P D T S SGG+ +R I + P L ILDE SGLD
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 100 MLAHYFWQYLQRMSSNGQTIIITTHY 125
+ + ++ II THY
Sbjct: 179 DALKVVADGVNSLRDGKRSFIIVTHY 204
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 57 LPPDHRT-----CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYL-- 109
LP RT LSGGQ +RVS+A + + + D+P S +D + + ++ +
Sbjct: 113 LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIG 172
Query: 110 -QRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
+ M N +T I+ TH + Q +V+ +M G + S +EL+A G
Sbjct: 173 PKGMLKN-KTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDG 220
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 43 EFRAKMKELQEVLDLPPDHRTCST---LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
+F+ M+E +L +P D T S SGG+ +R I + P L ILDE SGLD
Sbjct: 138 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197
Query: 100 MLAHYFWQYLQRMSSNGQTIIITTHY 125
+ + ++ II THY
Sbjct: 198 DALKVVADGVNSLRDGKRSFIIVTHY 223
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 12 GFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQ 71
M Q + L F+++E Q + Y S++ +A + + + L R LSGG+
Sbjct: 88 AVMRQYSELAFPFSVSEVIQMGRAPYG-GSQDRQALQQVMAQTDCLALAQRDYRVLSGGE 146
Query: 72 VRRVSIAVTLLH------TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTH 124
+RV +A L TP + LDEPTS LD + + L++++ + H
Sbjct: 147 QQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLH 206
Query: 125 YIE-EARQANVVGLMRKGVLLAEKSPEELI 153
+ A A+ + L+ +G L+A +PEE++
Sbjct: 207 DLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 11 IGFMPQ-----------ETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP 59
IGF+PQ + L T TF + S +++ M+ L +
Sbjct: 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFA------KPKSHDYQVAMQALDYLNLTHL 121
Query: 60 DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQT 118
R ++LSGGQ + + IA + L++LDEPTS LD L ++ S T
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 119 IIITTHYIEEARQANVVGLMRKGVLLAEKS 148
++ TTH + VV + K +LL +++
Sbjct: 182 VVFTTHQPNQ-----VVAIANKTLLLNKQN 206
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYL-QRMSSNGQTIII 121
T + LSGGQ + V++A L+ P L+ILD+ TS LD + L + +T+++
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 122 TTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
TH + A +A+ + +++G + + + +L+ G
Sbjct: 213 ITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGC 249
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNGQTII 120
S LSGGQ + V++A L+ P ++ILD+ TS LD + ++ +R S ++++
Sbjct: 153 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS---RSVL 209
Query: 121 ITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
+ T ++ QA+ + + G + + ++L+ G
Sbjct: 210 LITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC 247
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 43 EFRAKMKELQEVLDLPPDHRT---CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
EF K+K+ E+LD + + SGG+ +R I L+ P+ +LDE SGLD
Sbjct: 117 EFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 100 MLAHYFWQYLQRMSSNGQTIIITTHY--IEEARQANVVGLMRKGVLLAEKSPE 150
+ + M ++ THY I Q + V +M G ++A PE
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 45 RAKMKELQEVLDLPPD-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAH 103
R K E++E+L++ ++ + LSGG ++R+ +A +LL + I D+P+S LD
Sbjct: 116 RGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERM 175
Query: 104 YFWQYLQRMSSNGQTIIITTHYI 126
+ ++ + N I++ I
Sbjct: 176 NMAKAIRELLKNKYVIVVDHDLI 198
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI 119
+ LSGG+++++ IA TL L +LD+P+S LD + + ++R++ + +
Sbjct: 382 NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 39 ISSEEFRA-KMKELQE---VLDLPPD---HRTCSTLSGGQVRRVSIAVTLLHTPSLVILD 91
++S +FR KE++E L L P+ H LSGGQ ++ +A P L++LD
Sbjct: 861 LASGQFRPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 920
Query: 92 EPTSGLD 98
EPT+ LD
Sbjct: 921 EPTNYLD 927
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
S LSGG ++++A +L +++LDEPT+ LD + + YL ++ G T I +H
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL---NTCGITSITISH 597
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 39 ISSEEFRA-KMKELQE---VLDLPPD---HRTCSTLSGGQVRRVSIAVTLLHTPSLVILD 91
++S +FR KE++E L L P+ H LSGGQ ++ +A P L++LD
Sbjct: 867 LASGQFRPLTRKEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 92 EPTSGLD 98
EPT+ LD
Sbjct: 927 EPTNYLD 933
Score = 35.4 bits (80), Expect = 0.028, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
S LSGG ++++A +L +++LDEPT+ LD + + YL ++ G T I +H
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL---NTCGITSITISH 603
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 36 LYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPT 94
+Y+ +E R + +L +++ + LS G+ +RV IA L P ++ILDEP
Sbjct: 130 VYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPA 189
Query: 95 SGLDPMLAHYFWQYLQRMSSNGQTI--IITTHYIEE--ARQANVVGLMRKGVLLAEKSPE 150
+GLD + L +S + T+ I TH+IEE A + ++ L++ G + + + E
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKIL-LLKDGQSIQQGAVE 248
Query: 151 ELIAS 155
+++ S
Sbjct: 249 DILTS 253
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 11/106 (10%)
Query: 25 TIAETFQFYASLYRISSEEFRAKMKEL---QEVLDLPPDHRTCSTLSGGQVRRVSIAVTL 81
T+ + Y L + + F +K L +E+L R LS GQ V ++ L
Sbjct: 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-----RRKLYKLSAGQSVLVRTSLAL 143
Query: 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
P +V LDEP +D H +Y++ G I+ TH ++
Sbjct: 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---ILVTHELD 186
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 39 ISSEEFRA-KMKELQE---VLDLPPD---HRTCSTLSGGQVRRVSIAVTLLHTPSLVILD 91
++S +FR KE++E +L L P+ H LSGGQ ++ +A P L++LD
Sbjct: 867 LASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 92 EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
EPT+ LD + L+ +II TH E
Sbjct: 927 EPTNYLDRDSLGALSKALKEFEGG---VIIITHSAE 959
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
S LSGG ++++A +L +++LDEPT+ LD + + YL ++ G T I +H
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL---NTCGITSITISH 603
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLH--TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI 119
R +TLSGG+ +R+ +A + L +LDEP+ GL + L R+ G T+
Sbjct: 517 RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576
Query: 120 IITTH 124
I+ H
Sbjct: 577 IVVEH 581
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 66 TLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
TLSGG+ +RV +A L ++ ILDEPT+GL + + G T+I+
Sbjct: 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI 922
Query: 123 THYIE 127
H ++
Sbjct: 923 EHNLD 927
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD F + ++ +N +T I+ T
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTS 218
Query: 125 YIEEARQANVVGLMRKG 141
+E R+A+ + ++ +G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD F + ++ +N +T I+ T
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTS 218
Query: 125 YIEEARQANVVGLMRKG 141
+E R+A+ + ++ +G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD F + ++ +N +T I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTS 217
Query: 125 YIEEARQANVVGLMRKG 141
+E R+A+ + ++ +G
Sbjct: 218 KMEHLRKADKILILHQG 234
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD F + ++ +N +T I+ T
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTS 218
Query: 125 YIEEARQANVVGLMRKG 141
+E R+A+ + ++ +G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD F + ++ +N +T I+ T
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTS 218
Query: 125 YIEEARQANVVGLMRKG 141
+E R+A+ + ++ +G
Sbjct: 219 KMEHLRKADKILILHQG 235
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
T + LSGGQ + V++A L+ P L+ILD TS LD
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 53 EVLDLPPDHR--TCSTLSGGQVRRVSIAVTLLHT------PSLVILDEPTSGLDPMLAHY 104
E++ PP + + LSGG+ R A+ LL + +LDE + LD
Sbjct: 313 EIIAQPPGKKLQNLNLLSGGE--RALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFR 370
Query: 105 FWQYLQRMSSNGQTIIITTHY--IEEA 129
F QYL++ SS+ Q I+IT +EEA
Sbjct: 371 FAQYLKKYSSDTQFIVITHRKGTMEEA 397
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 218
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 219 KMEHLKKADKILILHEG 235
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 200
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 201 KMEHLKKADKILILHEG 217
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 188
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 189 KMEHLKKADKILILHEG 205
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 217
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 218 KMEHLKKADKILILHEG 234
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 129 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 187
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 188 KMEHLKKADKILILHEG 204
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 217
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 218 KMEHLKKADKILILHEG 234
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLV-------ILDEPTSGLDPMLAHYFWQYLQRMSSN 115
T LSGG+ V++++ L +L+ ILDEPT LD + +++ S
Sbjct: 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI 336
Query: 116 GQTIIITTH 124
Q IIIT H
Sbjct: 337 PQMIIITHH 345
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PPDHR--TCSTLSGGQVRRVS 76
+ E+F + SL E + E + +LD P R S LSGG+ V
Sbjct: 170 VNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVG 229
Query: 77 IAVTL----LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
+A+ + +LDE S LD A F + L+ S + Q I+IT + I
Sbjct: 230 LALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI 283
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 47 KMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFW 106
K+ +L+ VL R LSGG+++R +I ++ + + + DEP+S LD
Sbjct: 207 KILQLENVL-----KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261
Query: 107 QYLQRMSSNGQTIIITTH 124
Q ++ + + + +I H
Sbjct: 262 QIIRSLLAPTKYVICVEH 279
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTH 124
LSGG+++RV+I + L + ++DEP++ LD + ++R + N +T I H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLS GQ ++S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 218
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 219 KMEHLKKADKILILHEG 235
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLS GQ ++S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 217
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 218 KMEHLKKADKILILHEG 234
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LS G + + +A ++L +++LDEP++ LDP+ + L++ ++ T+I+ I
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADC-TVILCEARI 214
Query: 127 E 127
E
Sbjct: 215 E 215
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 61 HRTCSTLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R + LSGG+ R+++++ L SL+ILDEPT LD ++R
Sbjct: 83 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 142
Query: 115 NGQTIIITTH 124
+I+ +H
Sbjct: 143 KIPQVILVSH 152
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 61 HRTCSTLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R + LSGG+ R+++++ L SL+ILDEPT LD ++R
Sbjct: 78 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 137
Query: 115 NGQTIIITTH 124
+I+ +H
Sbjct: 138 KIPQVILVSH 147
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 61 HRTCSTLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R + LSGG+ R+++++ L SL+ILDEPT LD ++R
Sbjct: 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 111
Query: 115 NGQTIIITTH 124
+I+ +H
Sbjct: 112 KIPQVILVSH 121
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 61 HRTCSTLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R + LSGG+ R+++++ L SL+ILDEPT LD ++R
Sbjct: 263 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 322
Query: 115 NGQTIIITTH 124
+I+ +H
Sbjct: 323 KIPQVILVSH 332
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 61 HRTCSTLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R + LSGG+ R+++++ L SL+ILDEPT LD ++R
Sbjct: 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK 302
Query: 115 NGQTIIITTH 124
+I+ +H
Sbjct: 303 KIPQVILVSH 312
>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
Length = 528
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 83 HTPSLVILDEPTSGLDPMLAHYFWQYL 109
HT L I DEPT G DP L YL
Sbjct: 32 HTLQLAIGDEPTEGFDPXLGWSHGSYL 58
>pdb|1C9L|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9L|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 357
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLE--EVF 165
Y+ R+S G+TI +T + EA A ++G+ RKG +L+ EE I Y + L+ ++
Sbjct: 292 YMNRIS--GETIFVTAPH--EAT-AGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLA 346
Query: 166 LRLCHQQNQA 175
LR+ + N A
Sbjct: 347 LRMAVRNNLA 356
>pdb|1WSA|A Chain A, Structure Of L-Asparaginase Ii Precursor
pdb|1WSA|B Chain B, Structure Of L-Asparaginase Ii Precursor
Length = 330
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 14/75 (18%)
Query: 143 LLAEKSPEELIASYGVDSLEEV--FLRLCHQQNQAIEAEPEKGPNKKGLVGGVRVIEILA 200
LLA+K E +I ++G D++EE FL L + + + LVG +R ++
Sbjct: 78 LLAQKETEAVIITHGTDTMEETAFFLNLTVKSQKPVV-----------LVGAMRPGSSMS 126
Query: 201 GYTIVLVLYNLINIA 215
+ LYN +N+A
Sbjct: 127 ADG-PMNLYNAVNVA 140
>pdb|1C9I|A Chain A, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
pdb|1C9I|B Chain B, Peptide-In-Groove Interactions Link Target Proteins To The
B-Propeller Of Clathrin
Length = 359
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLE--EVF 165
Y+ R+S G+TI +T + EA A ++G+ RKG +L+ EE I Y + L+ ++
Sbjct: 294 YMNRIS--GETIFVTAPH--EAT-AGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLA 348
Query: 166 LRLCHQQNQA 175
LR+ + N A
Sbjct: 349 LRMAVRNNLA 358
>pdb|4G55|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 2
Length = 369
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLE--EVF 165
Y+ R+S G+TI +T + EA A ++G+ RKG +L+ EE I Y + L+ ++
Sbjct: 299 YMNRIS--GETIFVTAPH--EAT-AGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLA 353
Query: 166 LRLCHQQNQA 175
LR+ + N A
Sbjct: 354 LRMAVRNNLA 363
>pdb|2XZG|A Chain A, Clathrin Terminal Domain Complexed With Pitstop 1
Length = 365
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLE--EVF 165
Y+ R+S G+TI +T + EA A ++G+ RKG +L+ EE I Y + L+ ++
Sbjct: 295 YMNRIS--GETIFVTAPH--EAT-AGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLA 349
Query: 166 LRLCHQQNQA 175
LR+ + N A
Sbjct: 350 LRMAVRNNLA 359
>pdb|1UTC|A Chain A, Clathrin Terminal Domain Complexed With Tlpwdlwtt
pdb|1UTC|B Chain B, Clathrin Terminal Domain Complexed With Tlpwdlwtt
pdb|3GC3|B Chain B, Crystal Structure Of Arrestin2s And Clathrin
pdb|3GD1|I Chain I, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 363
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLE--EVF 165
Y+ R+S G+TI +T + EA A ++G+ RKG +L+ EE I Y + L+ ++
Sbjct: 294 YMNRIS--GETIFVTAPH--EAT-AGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLA 348
Query: 166 LRLCHQQNQA 175
LR+ + N A
Sbjct: 349 LRMAVRNNLA 358
>pdb|1BPO|A Chain A, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|B Chain B, Clathrin Heavy-Chain Terminal Domain And Linker
pdb|1BPO|C Chain C, Clathrin Heavy-Chain Terminal Domain And Linker
Length = 494
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLE--EVF 165
Y+ R+S G+TI +T + EA A ++G+ RKG +L+ EE I Y + L+ ++
Sbjct: 294 YMNRIS--GETIFVTAPH--EAT-AGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLA 348
Query: 166 LRLCHQQNQA 175
LR+ + N A
Sbjct: 349 LRMAVRNNLA 358
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLE--EVF 165
Y+ R+S G+TI +T + EA A ++G+ RKG +L+ EE I Y + L+ ++
Sbjct: 294 YMNRIS--GETIFVTAPH--EA-TAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLA 348
Query: 166 LRLCHQQNQA 175
LR+ + N A
Sbjct: 349 LRMAVRNNLA 358
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 27.3 bits (59), Expect = 9.0, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 108 YLQRMSSNGQTIIITTHYIEEARQANVVGLMRK------GVLLAEKSPEELIASYGVD 159
YL ++ NG I+ Y+ + R + +G + + GV+LA +P+E +Y D
Sbjct: 146 YLNALAGNGVHIVTVNDYLAK-RDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNAD 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,159,817
Number of Sequences: 62578
Number of extensions: 274983
Number of successful extensions: 712
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 138
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)