Query psy4634
Match_columns 249
No_of_seqs 269 out of 1666
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 21:49:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 3.2E-44 7E-49 303.8 17.4 155 8-162 76-233 (240)
2 COG1135 AbcC ABC-type metal io 100.0 1.3E-42 2.8E-47 307.3 15.4 151 8-158 82-235 (339)
3 COG1125 OpuBA ABC-type proline 100.0 4.5E-41 9.8E-46 290.6 13.8 151 8-158 74-229 (309)
4 COG4175 ProV ABC-type proline/ 100.0 6.9E-40 1.5E-44 290.4 13.2 151 8-158 105-258 (386)
5 COG4555 NatA ABC-type Na+ tran 100.0 2.5E-39 5.4E-44 271.4 13.5 161 8-168 74-236 (245)
6 COG1127 Ttg2A ABC-type transpo 100.0 7.8E-39 1.7E-43 274.7 16.1 148 8-155 84-236 (263)
7 COG1116 TauB ABC-type nitrate/ 100.0 1.8E-38 3.8E-43 274.6 15.3 139 6-144 69-212 (248)
8 COG1118 CysA ABC-type sulfate/ 100.0 1.8E-38 4E-43 280.5 15.0 151 8-158 76-231 (345)
9 COG3839 MalK ABC-type sugar tr 100.0 2.8E-38 6E-43 286.4 16.2 150 8-157 74-226 (338)
10 COG1131 CcmA ABC-type multidru 100.0 8.4E-38 1.8E-42 280.7 18.9 148 8-155 77-227 (293)
11 COG3842 PotA ABC-type spermidi 100.0 2.7E-38 5.8E-43 287.9 14.0 150 8-157 76-229 (352)
12 KOG0055|consensus 100.0 6.6E-38 1.4E-42 315.9 13.7 231 8-249 426-726 (1228)
13 COG1122 CbiO ABC-type cobalt t 100.0 3.2E-37 6.8E-42 268.5 15.9 147 8-155 78-229 (235)
14 PRK13537 nodulation ABC transp 100.0 1.4E-36 3E-41 274.3 19.6 148 8-155 79-228 (306)
15 TIGR02314 ABC_MetN D-methionin 100.0 2.3E-36 5E-41 276.7 20.2 149 8-156 81-232 (343)
16 PRK11650 ugpC glycerol-3-phosp 100.0 2.3E-36 4.9E-41 278.2 19.8 149 8-156 75-226 (356)
17 TIGR03258 PhnT 2-aminoethylpho 100.0 3.4E-36 7.3E-41 277.5 20.3 149 8-156 78-230 (362)
18 PRK11432 fbpC ferric transport 100.0 4.3E-36 9.2E-41 275.8 20.1 150 8-157 77-229 (351)
19 COG1136 SalX ABC-type antimicr 100.0 3.6E-36 7.7E-41 259.0 17.7 137 8-144 82-221 (226)
20 TIGR01186 proV glycine betaine 100.0 6.9E-36 1.5E-40 275.3 20.6 150 8-157 70-222 (363)
21 TIGR03265 PhnT2 putative 2-ami 100.0 7.1E-36 1.5E-40 274.6 20.2 149 8-156 75-226 (353)
22 COG1120 FepC ABC-type cobalami 100.0 1.1E-36 2.3E-41 267.0 13.3 150 5-155 73-229 (258)
23 COG4152 ABC-type uncharacteriz 100.0 1.7E-36 3.7E-41 260.8 13.1 155 4-158 67-223 (300)
24 TIGR01188 drrA daunorubicin re 100.0 1.4E-35 3.1E-40 267.1 19.3 147 9-155 66-214 (302)
25 PRK13536 nodulation factor exp 100.0 2.3E-35 5E-40 269.9 20.1 148 8-155 113-262 (340)
26 PRK09452 potA putrescine/sperm 100.0 2.3E-35 5E-40 273.0 19.7 149 8-156 85-236 (375)
27 PRK11607 potG putrescine trans 100.0 3E-35 6.4E-40 272.5 20.1 149 8-156 90-241 (377)
28 PRK10851 sulfate/thiosulfate t 100.0 5.4E-35 1.2E-39 268.7 19.8 149 8-156 73-228 (353)
29 COG1117 PstB ABC-type phosphat 100.0 8.9E-36 1.9E-40 252.0 13.1 150 8-159 87-242 (253)
30 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3E-35 6.5E-40 256.9 15.8 146 8-155 74-228 (254)
31 PRK11000 maltose/maltodextrin 100.0 9.6E-35 2.1E-39 268.6 20.1 149 8-156 74-225 (369)
32 TIGR03415 ABC_choXWV_ATP choli 100.0 1.3E-34 2.8E-39 268.2 20.5 147 9-155 106-255 (382)
33 TIGR01288 nodI ATP-binding ABC 100.0 1.7E-34 3.7E-39 260.2 19.6 148 8-155 76-225 (303)
34 TIGR01187 potA spermidine/putr 100.0 2.5E-34 5.3E-39 261.7 20.2 149 8-156 41-192 (325)
35 COG2884 FtsE Predicted ATPase 100.0 7.1E-35 1.5E-39 242.6 15.1 141 8-148 78-220 (223)
36 cd03261 ABC_Org_Solvent_Resist 100.0 2E-34 4.3E-39 250.1 18.6 147 8-154 76-226 (235)
37 PRK11153 metN DL-methionine tr 100.0 2.6E-34 5.6E-39 263.4 20.3 149 8-156 81-232 (343)
38 COG1124 DppF ABC-type dipeptid 100.0 8.6E-35 1.9E-39 250.3 15.9 146 8-155 81-232 (252)
39 COG4598 HisP ABC-type histidin 100.0 3.2E-35 6.9E-40 243.3 12.3 154 9-162 93-249 (256)
40 PRK10070 glycine betaine trans 100.0 4.2E-34 9.1E-39 266.4 20.8 148 9-156 106-256 (400)
41 COG3840 ThiQ ABC-type thiamine 100.0 4.8E-35 1E-39 242.3 12.6 154 3-157 65-222 (231)
42 TIGR03522 GldA_ABC_ATP gliding 100.0 2.9E-34 6.3E-39 258.5 18.9 147 8-155 74-222 (301)
43 COG0444 DppD ABC-type dipeptid 100.0 2.8E-34 6E-39 256.2 18.5 153 7-159 86-248 (316)
44 COG1137 YhbG ABC-type (unclass 100.0 7.1E-35 1.5E-39 244.4 13.2 149 8-156 78-230 (243)
45 COG3638 ABC-type phosphate/pho 100.0 6E-35 1.3E-39 250.2 12.8 147 8-154 80-237 (258)
46 cd03265 ABC_DrrA DrrA is the A 100.0 5.5E-34 1.2E-38 245.1 18.1 145 8-152 72-219 (220)
47 PRK15079 oligopeptide ABC tran 100.0 8.3E-34 1.8E-38 258.9 20.2 148 9-156 98-253 (331)
48 PRK13651 cobalt transporter AT 100.0 6E-34 1.3E-38 257.1 18.9 147 8-155 104-255 (305)
49 cd03296 ABC_CysA_sulfate_impor 100.0 9.3E-34 2E-38 246.7 19.0 148 8-155 73-227 (239)
50 PRK13637 cbiO cobalt transport 100.0 1.1E-33 2.4E-38 253.1 19.7 146 8-154 82-234 (287)
51 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-33 2.3E-38 245.4 18.9 146 9-154 75-232 (236)
52 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.3E-33 5.1E-38 248.8 20.4 147 9-155 102-251 (269)
53 cd03258 ABC_MetN_methionine_tr 100.0 1.9E-33 4.2E-38 243.5 19.0 147 8-154 81-230 (233)
54 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.7E-33 8.1E-38 242.4 20.8 157 9-165 74-232 (236)
55 cd03259 ABC_Carb_Solutes_like 100.0 1.2E-33 2.6E-38 241.7 17.4 140 8-147 71-213 (213)
56 TIGR00960 3a0501s02 Type II (G 100.0 1E-33 2.2E-38 242.6 16.7 135 9-143 80-216 (216)
57 cd03218 ABC_YhbG The ABC trans 100.0 2.1E-33 4.5E-38 243.0 18.7 146 9-154 75-222 (232)
58 PRK13643 cbiO cobalt transport 100.0 2.5E-33 5.4E-38 251.0 19.3 146 8-154 83-233 (288)
59 PRK11264 putative amino-acid A 100.0 5.6E-33 1.2E-37 243.0 20.5 148 8-155 84-234 (250)
60 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.6E-33 5.7E-38 240.9 18.0 143 8-150 72-219 (220)
61 PRK13650 cbiO cobalt transport 100.0 2.2E-33 4.9E-38 250.2 18.1 147 9-155 81-230 (279)
62 PRK11022 dppD dipeptide transp 100.0 5.4E-33 1.2E-37 253.0 20.9 149 9-157 89-246 (326)
63 PRK09536 btuD corrinoid ABC tr 100.0 2.2E-33 4.8E-38 261.7 18.7 148 8-155 76-229 (402)
64 PRK13634 cbiO cobalt transport 100.0 3.3E-33 7.2E-38 250.4 18.8 146 9-155 85-236 (290)
65 cd03266 ABC_NatA_sodium_export 100.0 2.6E-33 5.7E-38 240.2 17.3 140 8-147 77-218 (218)
66 TIGR02142 modC_ABC molybdenum 100.0 4.2E-33 9.2E-38 256.3 19.3 147 8-156 74-223 (354)
67 PRK09473 oppD oligopeptide tra 100.0 8.5E-33 1.8E-37 252.1 20.9 149 9-157 97-254 (330)
68 PRK11308 dppF dipeptide transp 100.0 8.6E-33 1.9E-37 251.8 20.7 148 9-156 92-246 (327)
69 PRK13647 cbiO cobalt transport 100.0 5.1E-33 1.1E-37 247.3 18.4 144 9-152 79-225 (274)
70 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.7E-33 1.7E-37 241.3 19.1 148 8-155 74-226 (242)
71 PRK13631 cbiO cobalt transport 100.0 6E-33 1.3E-37 252.2 19.1 147 8-155 115-266 (320)
72 PRK09493 glnQ glutamine ABC tr 100.0 8.6E-33 1.9E-37 240.6 19.2 148 8-155 76-226 (240)
73 PRK10619 histidine/lysine/argi 100.0 1.2E-32 2.7E-37 242.2 20.3 147 9-155 92-242 (257)
74 COG1123 ATPase components of v 100.0 5.7E-33 1.2E-37 263.3 19.3 153 7-159 89-249 (539)
75 cd03301 ABC_MalK_N The N-termi 100.0 5.9E-33 1.3E-37 237.2 17.5 139 9-147 72-213 (213)
76 PRK13641 cbiO cobalt transport 100.0 9E-33 2E-37 247.2 19.1 145 9-154 85-234 (287)
77 PRK11629 lolD lipoprotein tran 100.0 9.9E-33 2.2E-37 239.4 18.8 140 9-148 87-228 (233)
78 TIGR00972 3a0107s01c2 phosphat 100.0 1.5E-32 3.2E-37 240.2 20.1 146 8-155 81-233 (247)
79 PRK14268 phosphate ABC transpo 100.0 1.5E-32 3.2E-37 241.9 20.1 146 9-156 93-244 (258)
80 cd03256 ABC_PhnC_transporter A 100.0 8.3E-33 1.8E-37 240.3 18.1 145 9-153 78-233 (241)
81 cd03263 ABC_subfamily_A The AB 100.0 7.9E-33 1.7E-37 237.6 17.7 144 8-152 74-219 (220)
82 cd03260 ABC_PstB_phosphate_tra 100.0 5.6E-33 1.2E-37 239.7 16.7 142 8-151 80-226 (227)
83 PRK13646 cbiO cobalt transport 100.0 9.9E-33 2.1E-37 246.8 18.7 147 8-155 84-236 (286)
84 PRK11144 modC molybdate transp 100.0 7.5E-33 1.6E-37 254.5 18.4 144 8-157 75-221 (352)
85 cd03224 ABC_TM1139_LivF_branch 100.0 6.8E-33 1.5E-37 238.1 16.9 143 9-153 75-220 (222)
86 PRK11831 putative ABC transpor 100.0 1.2E-32 2.7E-37 244.0 19.0 147 9-155 84-234 (269)
87 COG4161 ArtP ABC-type arginine 100.0 2.2E-33 4.7E-38 229.0 12.9 145 8-152 81-228 (242)
88 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.6E-33 1.4E-37 237.7 16.4 135 9-143 82-218 (218)
89 PRK13644 cbiO cobalt transport 100.0 1.1E-32 2.3E-37 245.2 18.2 146 9-154 77-224 (274)
90 cd03264 ABC_drug_resistance_li 100.0 9.7E-33 2.1E-37 235.7 17.1 139 8-147 71-211 (211)
91 TIGR02211 LolD_lipo_ex lipopro 100.0 1.2E-32 2.6E-37 236.6 17.6 136 9-144 83-220 (221)
92 KOG0055|consensus 100.0 1.9E-33 4.1E-38 283.8 14.6 146 8-157 1063-1216(1228)
93 cd03269 ABC_putative_ATPase Th 100.0 1.4E-32 2.9E-37 234.7 17.5 140 8-147 69-210 (210)
94 PRK15093 antimicrobial peptide 100.0 3.3E-32 7.1E-37 248.2 20.6 148 9-156 89-250 (330)
95 PRK13636 cbiO cobalt transport 100.0 1.9E-32 4.1E-37 244.7 18.6 146 9-154 82-231 (283)
96 TIGR02315 ABC_phnC phosphonate 100.0 1.1E-32 2.4E-37 240.0 16.5 146 8-153 78-234 (243)
97 PRK13635 cbiO cobalt transport 100.0 1.9E-32 4E-37 244.3 18.2 147 8-154 80-229 (279)
98 cd03297 ABC_ModC_molybdenum_tr 100.0 2.1E-32 4.5E-37 234.3 17.6 138 8-147 74-214 (214)
99 cd03292 ABC_FtsE_transporter F 100.0 1.4E-32 3.1E-37 234.8 16.5 135 9-143 78-214 (214)
100 TIGR02770 nickel_nikD nickel i 100.0 4.5E-32 9.9E-37 234.9 19.8 147 9-155 62-216 (230)
101 TIGR02673 FtsE cell division A 100.0 1.4E-32 3.1E-37 235.0 16.4 135 8-142 78-214 (214)
102 PRK10908 cell division protein 100.0 2.4E-32 5.3E-37 235.1 17.6 138 8-145 78-217 (222)
103 PRK13640 cbiO cobalt transport 100.0 2.4E-32 5.1E-37 243.9 18.0 146 9-154 84-232 (282)
104 PRK14273 phosphate ABC transpo 100.0 4.9E-32 1.1E-36 237.8 19.4 148 8-157 87-241 (254)
105 PRK10895 lipopolysaccharide AB 100.0 2.7E-32 5.8E-37 237.6 17.6 146 9-154 78-226 (241)
106 PRK14247 phosphate ABC transpo 100.0 6.8E-32 1.5E-36 236.3 20.0 147 8-155 81-235 (250)
107 KOG0058|consensus 100.0 6.5E-33 1.4E-37 267.3 14.7 156 8-172 541-704 (716)
108 PRK14242 phosphate transporter 100.0 7.8E-32 1.7E-36 236.3 20.3 146 9-156 87-239 (253)
109 PRK13652 cbiO cobalt transport 100.0 4.5E-32 9.8E-37 241.5 19.0 146 9-154 78-227 (277)
110 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.4E-32 5.2E-37 233.3 16.5 139 9-147 70-211 (211)
111 TIGR03411 urea_trans_UrtD urea 100.0 4.8E-32 1E-36 236.0 18.7 145 9-154 77-231 (242)
112 PRK11124 artP arginine transpo 100.0 5.1E-32 1.1E-36 236.0 18.8 145 9-153 82-229 (242)
113 cd03268 ABC_BcrA_bacitracin_re 100.0 2.2E-32 4.8E-37 233.1 16.1 135 9-147 72-208 (208)
114 PRK13638 cbiO cobalt transport 100.0 4.9E-32 1.1E-36 240.3 18.6 147 9-155 77-226 (271)
115 PRK10584 putative ABC transpor 100.0 5.5E-32 1.2E-36 233.7 18.2 138 9-146 88-227 (228)
116 PRK10771 thiQ thiamine transpo 100.0 4.1E-32 9E-37 235.3 17.3 147 9-155 71-220 (232)
117 PRK13649 cbiO cobalt transport 100.0 6.7E-32 1.4E-36 240.4 19.0 146 8-154 84-234 (280)
118 PRK10744 pstB phosphate transp 100.0 8.7E-32 1.9E-36 237.3 19.4 147 8-156 93-246 (260)
119 TIGR01184 ntrCD nitrate transp 100.0 3.7E-32 8.1E-37 235.7 16.8 143 10-152 55-202 (230)
120 PRK13633 cobalt transporter AT 100.0 5.2E-32 1.1E-36 241.4 18.2 147 8-155 84-234 (280)
121 TIGR03005 ectoine_ehuA ectoine 100.0 9.8E-32 2.1E-36 235.7 19.6 149 8-156 86-238 (252)
122 PRK13639 cbiO cobalt transport 100.0 8.4E-32 1.8E-36 239.5 19.0 146 8-154 77-226 (275)
123 PRK13642 cbiO cobalt transport 100.0 6.6E-32 1.4E-36 240.4 18.4 148 8-155 80-230 (277)
124 PRK14239 phosphate transporter 100.0 1.3E-31 2.9E-36 234.5 19.6 147 8-156 85-238 (252)
125 PRK11300 livG leucine/isoleuci 100.0 7.7E-32 1.7E-36 236.4 17.9 146 9-154 80-243 (255)
126 cd03300 ABC_PotA_N PotA is an 100.0 1.6E-31 3.5E-36 231.8 19.7 148 8-155 71-221 (232)
127 PRK14245 phosphate ABC transpo 100.0 1.7E-31 3.6E-36 234.0 20.0 147 8-156 83-236 (250)
128 PRK13548 hmuV hemin importer A 100.0 8.6E-32 1.9E-36 237.3 18.2 146 9-154 76-230 (258)
129 cd03299 ABC_ModC_like Archeal 100.0 1.3E-31 2.8E-36 232.9 19.1 148 8-155 70-220 (235)
130 PRK11614 livF leucine/isoleuci 100.0 4.7E-32 1E-36 235.6 16.3 144 9-154 80-226 (237)
131 COG1123 ATPase components of v 100.0 5.3E-32 1.2E-36 256.7 18.0 149 9-157 367-522 (539)
132 PRK14256 phosphate ABC transpo 100.0 1.9E-31 4.1E-36 233.9 20.1 149 8-157 84-239 (252)
133 TIGR01277 thiQ thiamine ABC tr 100.0 9.2E-32 2E-36 230.3 17.7 141 8-148 69-212 (213)
134 COG4148 ModC ABC-type molybdat 100.0 5.3E-33 1.2E-37 243.1 10.0 143 8-156 75-220 (352)
135 cd03225 ABC_cobalt_CbiO_domain 100.0 6.2E-32 1.4E-36 230.6 16.5 134 9-142 75-211 (211)
136 PRK14267 phosphate ABC transpo 100.0 1.5E-31 3.3E-36 234.5 19.0 146 9-155 85-238 (253)
137 PRK10261 glutathione transport 100.0 6.9E-32 1.5E-36 264.5 18.6 147 9-155 104-259 (623)
138 cd03262 ABC_HisP_GlnQ_permease 100.0 7.3E-32 1.6E-36 230.3 16.5 136 8-143 75-213 (213)
139 PRK14270 phosphate ABC transpo 100.0 2E-31 4.4E-36 233.5 19.7 147 8-156 84-237 (251)
140 PRK10261 glutathione transport 100.0 1.3E-31 2.9E-36 262.5 20.5 149 8-156 400-555 (623)
141 cd03226 ABC_cobalt_CbiO_domain 100.0 6.5E-32 1.4E-36 229.8 15.9 133 8-144 70-205 (205)
142 PRK13632 cbiO cobalt transport 100.0 1E-31 2.2E-36 238.4 17.7 147 8-154 82-231 (271)
143 PRK11231 fecE iron-dicitrate t 100.0 1E-31 2.2E-36 236.1 17.4 146 9-154 76-227 (255)
144 PRK11248 tauB taurine transpor 100.0 1.6E-31 3.4E-36 235.4 18.6 141 9-149 70-215 (255)
145 TIGR02769 nickel_nikE nickel i 100.0 1.7E-31 3.7E-36 236.2 18.5 146 9-154 88-240 (265)
146 PRK14269 phosphate ABC transpo 100.0 2.5E-31 5.5E-36 232.4 19.3 146 8-155 78-231 (246)
147 PRK13645 cbiO cobalt transport 100.0 1.7E-31 3.8E-36 239.0 18.4 146 8-154 89-240 (289)
148 PRK14274 phosphate ABC transpo 100.0 3.1E-31 6.8E-36 233.5 19.7 145 9-155 93-244 (259)
149 PRK14241 phosphate transporter 100.0 3.3E-31 7.1E-36 233.2 19.7 147 8-155 84-243 (258)
150 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-31 3.7E-36 256.5 19.3 147 9-155 109-259 (520)
151 PRK14240 phosphate transporter 100.0 3.6E-31 7.8E-36 231.7 19.6 147 8-156 83-236 (250)
152 PRK09984 phosphonate/organopho 100.0 1.6E-31 3.4E-36 235.8 17.2 144 9-152 86-240 (262)
153 TIGR01978 sufC FeS assembly AT 100.0 3.4E-31 7.3E-36 230.5 18.9 145 9-153 77-233 (243)
154 PRK13648 cbiO cobalt transport 100.0 2.4E-31 5.2E-36 235.7 18.3 148 8-155 82-232 (269)
155 COG4525 TauB ABC-type taurine 100.0 7.7E-32 1.7E-36 225.6 14.2 143 8-150 73-220 (259)
156 TIGR00968 3a0106s01 sulfate AB 100.0 3.6E-31 7.8E-36 230.4 18.9 148 8-155 71-221 (237)
157 PRK15134 microcin C ABC transp 100.0 2.2E-31 4.8E-36 256.3 19.4 147 9-155 362-516 (529)
158 PRK15112 antimicrobial peptide 100.0 3.6E-31 7.8E-36 234.4 19.1 147 9-155 87-240 (267)
159 TIGR03740 galliderm_ABC gallid 100.0 4E-31 8.7E-36 227.7 18.9 139 9-151 70-210 (223)
160 PRK14235 phosphate transporter 100.0 5.4E-31 1.2E-35 233.3 20.0 146 8-155 99-252 (267)
161 COG0411 LivG ABC-type branched 100.0 1.2E-31 2.5E-36 231.0 15.2 149 8-156 78-241 (250)
162 TIGR03410 urea_trans_UrtE urea 100.0 2E-31 4.4E-36 230.4 16.9 141 9-152 75-219 (230)
163 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-31 5.1E-36 233.9 17.5 146 9-154 75-226 (256)
164 PRK14272 phosphate ABC transpo 100.0 6.4E-31 1.4E-35 230.2 19.9 146 9-155 85-237 (252)
165 PRK13549 xylose transporter AT 100.0 1.2E-31 2.7E-36 256.8 16.8 145 9-153 82-231 (506)
166 cd03235 ABC_Metallic_Cations A 100.0 1.8E-31 3.8E-36 228.3 15.9 138 9-147 68-213 (213)
167 cd03257 ABC_NikE_OppD_transpor 100.0 3.2E-31 6.9E-36 228.4 17.6 140 8-147 81-228 (228)
168 PRK14248 phosphate ABC transpo 100.0 5.5E-31 1.2E-35 233.2 19.4 148 8-157 101-255 (268)
169 PRK14244 phosphate ABC transpo 100.0 6.6E-31 1.4E-35 230.3 19.7 146 8-155 85-238 (251)
170 PRK10762 D-ribose transporter 100.0 1.6E-31 3.4E-36 255.8 16.9 145 9-153 79-229 (501)
171 PRK14249 phosphate ABC transpo 100.0 8.7E-31 1.9E-35 229.6 19.9 148 8-157 84-238 (251)
172 PRK03695 vitamin B12-transport 100.0 3.9E-31 8.4E-36 231.9 17.7 145 9-154 69-222 (248)
173 PRK10575 iron-hydroxamate tran 100.0 2.8E-31 6.1E-36 234.8 16.9 146 9-154 85-237 (265)
174 PRK11174 cysteine/glutathione 100.0 2.1E-31 4.6E-36 259.0 17.7 144 8-155 422-573 (588)
175 TIGR01257 rim_protein retinal- 100.0 2.9E-31 6.3E-36 282.4 19.6 149 9-157 2012-2162(2272)
176 PRK14257 phosphate ABC transpo 100.0 8.6E-31 1.9E-35 238.8 19.8 148 8-157 162-316 (329)
177 TIGR03269 met_CoM_red_A2 methy 100.0 5.2E-31 1.1E-35 253.2 19.3 145 9-154 365-517 (520)
178 COG4172 ABC-type uncharacteriz 100.0 3.5E-31 7.6E-36 241.3 16.9 150 8-157 362-519 (534)
179 PRK10253 iron-enterobactin tra 100.0 4.8E-31 1E-35 233.3 17.2 146 9-154 81-233 (265)
180 cd03267 ABC_NatA_like Similar 100.0 7.8E-31 1.7E-35 228.2 18.2 140 8-147 93-236 (236)
181 PRK14251 phosphate ABC transpo 100.0 1.4E-30 3E-35 228.1 19.5 146 8-155 84-236 (251)
182 TIGR03771 anch_rpt_ABC anchore 100.0 7.4E-31 1.6E-35 226.6 17.4 145 9-154 49-201 (223)
183 PRK11247 ssuB aliphatic sulfon 100.0 5.3E-31 1.2E-35 232.6 16.8 137 8-150 80-219 (257)
184 PRK14258 phosphate ABC transpo 100.0 1.8E-30 4E-35 229.1 20.2 147 8-155 87-246 (261)
185 PRK14253 phosphate ABC transpo 100.0 1.6E-30 3.4E-35 227.5 19.5 146 8-155 82-234 (249)
186 PRK09700 D-allose transporter 100.0 4.3E-31 9.3E-36 253.2 17.4 145 9-153 80-233 (510)
187 cd03234 ABCG_White The White s 100.0 1.1E-30 2.3E-35 225.6 18.0 140 8-147 80-226 (226)
188 PRK11701 phnK phosphonate C-P 100.0 2E-30 4.2E-35 228.3 19.9 147 9-155 89-242 (258)
189 COG1132 MdlB ABC-type multidru 100.0 3.2E-31 7E-36 256.9 16.4 144 8-155 402-553 (567)
190 PRK14275 phosphate ABC transpo 100.0 1.9E-30 4.1E-35 232.2 20.1 146 8-155 119-271 (286)
191 PRK15134 microcin C ABC transp 100.0 1.1E-30 2.4E-35 251.5 19.7 147 9-155 92-247 (529)
192 PRK14250 phosphate ABC transpo 100.0 9.3E-31 2E-35 228.3 17.5 143 8-155 76-222 (241)
193 PRK14236 phosphate transporter 100.0 2E-30 4.2E-35 230.3 19.5 146 8-155 105-257 (272)
194 PRK14255 phosphate ABC transpo 100.0 2.7E-30 5.9E-35 226.4 20.1 147 8-156 85-238 (252)
195 PRK14262 phosphate ABC transpo 100.0 1.9E-30 4.2E-35 227.1 19.1 146 8-155 83-235 (250)
196 COG4181 Predicted ABC-type tra 100.0 2.7E-31 5.9E-36 218.2 12.7 138 8-145 87-226 (228)
197 PRK14260 phosphate ABC transpo 100.0 2.4E-30 5.1E-35 228.0 19.5 145 9-155 88-244 (259)
198 PRK15439 autoinducer 2 ABC tra 100.0 7.5E-31 1.6E-35 251.7 17.6 142 9-154 86-229 (510)
199 PRK14254 phosphate ABC transpo 100.0 2.4E-30 5.3E-35 231.4 19.6 145 8-155 119-270 (285)
200 TIGR01257 rim_protein retinal- 100.0 1.2E-30 2.6E-35 277.8 20.2 148 9-157 1003-1152(2272)
201 PRK14261 phosphate ABC transpo 100.0 3.3E-30 7.2E-35 226.1 19.7 146 8-155 86-238 (253)
202 PRK14259 phosphate ABC transpo 100.0 2.4E-30 5.1E-35 229.5 18.9 145 9-156 94-255 (269)
203 PRK10418 nikD nickel transport 100.0 4.1E-30 8.9E-35 225.9 20.2 145 9-155 79-231 (254)
204 COG4172 ABC-type uncharacteriz 100.0 1.1E-30 2.3E-35 238.1 16.8 151 8-158 92-251 (534)
205 PRK14237 phosphate transporter 100.0 3.7E-30 8E-35 227.9 19.9 146 8-155 100-252 (267)
206 PRK14271 phosphate ABC transpo 100.0 4.1E-30 8.8E-35 229.0 20.1 146 8-155 100-252 (276)
207 PRK10982 galactose/methyl gala 100.0 1.1E-30 2.5E-35 249.2 17.6 145 9-153 73-222 (491)
208 PRK14238 phosphate transporter 100.0 3.6E-30 7.8E-35 228.6 19.3 146 8-155 104-256 (271)
209 TIGR02633 xylG D-xylose ABC tr 100.0 1.5E-30 3.2E-35 248.9 17.3 144 9-152 78-228 (500)
210 TIGR03608 L_ocin_972_ABC putat 100.0 2.4E-30 5.2E-35 219.9 16.0 131 8-138 75-206 (206)
211 PRK13549 xylose transporter AT 100.0 1.7E-30 3.7E-35 248.9 16.7 144 9-152 338-492 (506)
212 PRK14243 phosphate transporter 100.0 5.4E-30 1.2E-34 226.5 18.7 146 8-156 90-250 (264)
213 PRK14266 phosphate ABC transpo 100.0 6.4E-30 1.4E-34 223.8 18.9 145 9-155 84-235 (250)
214 PRK14246 phosphate ABC transpo 100.0 9.7E-30 2.1E-34 224.3 20.0 147 8-155 89-242 (257)
215 COG0410 LivF ABC-type branched 100.0 1.1E-30 2.5E-35 223.3 13.5 148 7-155 76-227 (237)
216 PRK14265 phosphate ABC transpo 100.0 7E-30 1.5E-34 227.2 19.0 147 8-157 100-261 (274)
217 COG2274 SunT ABC-type bacterio 100.0 6.8E-31 1.5E-35 258.9 13.8 144 8-155 546-697 (709)
218 TIGR02982 heterocyst_DevA ABC 100.0 4.3E-30 9.3E-35 221.0 16.7 136 8-143 81-219 (220)
219 COG4988 CydD ABC-type transpor 100.0 2.5E-30 5.5E-35 244.9 16.6 146 8-157 394-546 (559)
220 TIGR02323 CP_lyasePhnK phospho 100.0 1.3E-29 2.7E-34 222.3 19.5 147 9-155 86-239 (253)
221 PRK14263 phosphate ABC transpo 100.0 1.3E-29 2.7E-34 224.0 19.6 145 8-155 88-246 (261)
222 PRK13547 hmuV hemin importer A 100.0 4.3E-30 9.4E-35 228.5 16.7 146 9-154 83-244 (272)
223 PRK10419 nikE nickel transport 100.0 9E-30 2E-34 225.7 18.6 147 8-154 88-241 (268)
224 PRK11288 araG L-arabinose tran 100.0 5.1E-30 1.1E-34 245.4 17.7 141 9-149 79-224 (501)
225 cd03252 ABCC_Hemolysin The ABC 100.0 2.4E-30 5.3E-35 224.6 14.0 143 9-155 76-226 (237)
226 PRK14252 phosphate ABC transpo 100.0 1.7E-29 3.6E-34 223.4 19.4 147 8-156 98-251 (265)
227 PRK10762 D-ribose transporter 100.0 4.7E-30 1E-34 245.6 17.0 144 9-152 327-482 (501)
228 PLN03211 ABC transporter G-25; 100.0 8.2E-30 1.8E-34 251.0 18.6 147 8-154 139-296 (659)
229 PRK11288 araG L-arabinose tran 100.0 4.3E-30 9.4E-35 245.9 16.2 145 9-153 328-484 (501)
230 cd03251 ABCC_MsbA MsbA is an e 100.0 7.6E-30 1.6E-34 221.0 15.6 144 8-155 75-226 (234)
231 PRK13546 teichoic acids export 100.0 4E-29 8.8E-34 221.4 20.0 145 11-155 87-233 (264)
232 PRK09700 D-allose transporter 100.0 8.1E-30 1.8E-34 244.4 16.7 141 9-149 338-493 (510)
233 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2E-29 4.4E-34 217.9 17.5 130 18-147 93-224 (224)
234 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-29 2.5E-34 248.6 17.3 147 8-154 98-256 (617)
235 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 6.9E-30 1.5E-34 252.7 15.7 137 8-155 526-674 (686)
236 CHL00131 ycf16 sulfate ABC tra 100.0 4.5E-29 9.7E-34 218.5 18.8 142 10-151 85-238 (252)
237 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-29 2.3E-34 226.3 15.1 139 8-155 76-226 (275)
238 TIGR02633 xylG D-xylose ABC tr 100.0 1E-29 2.3E-34 243.0 16.0 143 9-151 336-489 (500)
239 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-29 2.8E-34 243.2 16.7 146 9-154 338-492 (510)
240 PRK14264 phosphate ABC transpo 100.0 4.3E-29 9.4E-34 225.4 18.9 145 9-155 126-290 (305)
241 PRK10790 putative multidrug tr 100.0 2.6E-29 5.5E-34 244.7 18.7 139 8-155 414-564 (592)
242 PRK13657 cyclic beta-1,2-gluca 100.0 2.6E-29 5.6E-34 244.6 17.8 144 8-155 408-559 (588)
243 cd03254 ABCC_Glucan_exporter_l 100.0 2.4E-29 5.3E-34 217.1 15.7 144 8-155 76-227 (229)
244 TIGR02324 CP_lyasePhnL phospho 100.0 4.2E-29 9.2E-34 215.1 16.7 130 9-138 90-222 (224)
245 PRK10247 putative ABC transpor 100.0 2.5E-29 5.5E-34 217.2 15.2 140 8-150 80-223 (225)
246 PRK11160 cysteine/glutathione 100.0 1.7E-29 3.8E-34 245.4 15.8 141 8-156 413-564 (574)
247 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.6E-29 3.5E-34 250.9 15.8 142 8-155 552-701 (710)
248 PRK11176 lipid transporter ATP 100.0 2.2E-29 4.7E-34 244.6 15.8 142 8-156 416-569 (582)
249 PTZ00265 multidrug resistance 100.0 1.4E-29 3E-34 266.7 15.0 144 8-154 1295-1452(1466)
250 PRK15056 manganese/iron transp 100.0 5.1E-29 1.1E-33 221.2 16.4 145 9-154 78-230 (272)
251 cd03253 ABCC_ATM1_transporter 100.0 5.3E-29 1.1E-33 216.0 16.0 143 9-155 75-225 (236)
252 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.7E-29 5.8E-34 218.2 14.2 143 9-155 77-227 (238)
253 TIGR01842 type_I_sec_PrtD type 100.0 6.5E-29 1.4E-33 239.9 17.8 144 8-154 391-542 (544)
254 TIGR00958 3a01208 Conjugate Tr 100.0 5.5E-29 1.2E-33 247.3 17.1 139 8-156 554-704 (711)
255 KOG0057|consensus 100.0 2.8E-29 6E-34 235.8 13.7 140 8-155 424-575 (591)
256 TIGR03375 type_I_sec_LssB type 100.0 4.2E-29 9.2E-34 247.4 15.8 144 8-155 538-689 (694)
257 PRK10938 putative molybdenum t 100.0 4.6E-29 1E-33 238.0 15.3 138 9-154 77-224 (490)
258 COG4559 ABC-type hemin transpo 100.0 2.2E-29 4.8E-34 213.0 11.3 148 8-155 74-231 (259)
259 cd03245 ABCC_bacteriocin_expor 100.0 3.5E-29 7.7E-34 214.9 12.8 131 9-147 78-220 (220)
260 PRK09580 sufC cysteine desulfu 100.0 3.2E-28 6.9E-33 212.5 18.8 144 9-152 78-233 (248)
261 TIGR01192 chvA glucan exporter 100.0 2.3E-28 4.9E-33 238.1 19.2 145 8-156 408-560 (585)
262 PRK13545 tagH teichoic acids e 100.0 2.6E-28 5.5E-33 232.4 19.0 142 14-155 90-233 (549)
263 TIGR01193 bacteriocin_ABC ABC- 100.0 7.8E-29 1.7E-33 246.0 15.8 145 8-156 547-699 (708)
264 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-28 2.5E-33 244.4 16.9 145 8-156 530-682 (694)
265 TIGR01166 cbiO cobalt transpor 100.0 1.1E-28 2.4E-33 207.6 14.1 121 8-129 67-190 (190)
266 PRK09544 znuC high-affinity zi 100.0 1.8E-28 3.8E-33 215.7 15.3 138 9-154 67-209 (251)
267 PRK10535 macrolide transporter 100.0 3.4E-28 7.3E-33 239.5 18.9 145 9-153 86-231 (648)
268 PRK13543 cytochrome c biogenes 100.0 3.6E-28 7.8E-33 208.5 16.5 129 9-140 82-212 (214)
269 PRK10789 putative multidrug tr 100.0 3.7E-28 8.1E-33 235.9 18.5 141 8-156 388-540 (569)
270 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.8E-28 8.3E-33 213.1 16.6 140 10-153 62-206 (246)
271 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-28 2.8E-33 238.4 14.0 141 8-155 405-557 (571)
272 PRK10982 galactose/methyl gala 100.0 3.2E-28 6.9E-33 232.4 16.4 142 9-150 323-476 (491)
273 PRK13538 cytochrome c biogenes 100.0 4E-28 8.6E-33 206.7 15.1 128 8-138 73-202 (204)
274 KOG0059|consensus 100.0 1.2E-28 2.6E-33 249.6 13.8 150 8-157 639-790 (885)
275 cd03369 ABCC_NFT1 Domain 2 of 100.0 5.8E-28 1.2E-32 205.8 15.4 127 8-149 81-207 (207)
276 cd03248 ABCC_TAP TAP, the Tran 100.0 2.8E-28 6.1E-33 210.2 13.3 131 9-143 88-226 (226)
277 cd03213 ABCG_EPDR ABCG transpo 100.0 7E-28 1.5E-32 203.9 15.4 112 8-147 81-194 (194)
278 COG1129 MglA ABC-type sugar tr 100.0 4.6E-28 9.9E-33 228.5 15.6 141 8-148 82-228 (500)
279 cd03244 ABCC_MRP_domain2 Domai 100.0 3.1E-28 6.8E-33 209.1 13.2 132 8-148 77-220 (221)
280 TIGR02204 MsbA_rel ABC transpo 100.0 9E-28 2E-32 232.9 17.8 139 9-155 414-564 (576)
281 cd03232 ABC_PDR_domain2 The pl 100.0 7.6E-28 1.6E-32 203.3 15.1 112 8-147 78-192 (192)
282 COG4987 CydC ABC-type transpor 100.0 2.6E-28 5.7E-33 228.9 12.8 140 9-156 412-563 (573)
283 cd03231 ABC_CcmA_heme_exporter 100.0 8.1E-28 1.8E-32 204.4 14.3 125 8-138 72-198 (201)
284 PLN03232 ABC transporter C fam 100.0 4E-28 8.7E-33 256.7 15.2 140 8-156 1309-1460(1495)
285 COG4604 CeuD ABC-type enteroch 100.0 4.5E-29 9.8E-34 209.2 6.1 148 8-155 74-226 (252)
286 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-27 3.6E-32 202.9 15.7 118 8-147 82-202 (202)
287 PRK11819 putative ABC transpor 100.0 1.7E-27 3.7E-32 230.7 17.7 143 9-154 70-250 (556)
288 cd03288 ABCC_SUR2 The SUR doma 100.0 9.9E-28 2.1E-32 211.2 14.6 143 8-155 94-244 (257)
289 PRK15064 ABC transporter ATP-b 100.0 2.5E-27 5.4E-32 228.3 18.0 143 9-154 64-242 (530)
290 PLN03140 ABC transporter G fam 100.0 3.7E-27 8.1E-32 247.9 19.8 142 9-150 953-1106(1470)
291 PLN03130 ABC transporter C fam 100.0 1.3E-27 2.7E-32 253.9 16.3 139 8-155 1312-1462(1622)
292 cd03215 ABC_Carb_Monos_II This 100.0 1.6E-27 3.5E-32 199.6 13.6 105 8-143 74-182 (182)
293 cd03230 ABC_DR_subfamily_A Thi 99.9 1.9E-27 4.1E-32 197.7 13.5 101 8-143 72-173 (173)
294 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.5E-27 9.7E-32 227.6 18.3 143 9-154 68-248 (552)
295 TIGR00957 MRP_assoc_pro multi 99.9 1.5E-27 3.3E-32 252.7 16.2 139 8-155 1359-1509(1522)
296 PRK13409 putative ATPase RIL; 99.9 2.5E-27 5.4E-32 230.9 16.3 133 10-148 401-536 (590)
297 cd03246 ABCC_Protease_Secretio 99.9 1.7E-27 3.6E-32 198.0 12.7 99 8-143 75-173 (173)
298 TIGR00956 3a01205 Pleiotropic 99.9 3.2E-27 6.9E-32 248.3 17.9 143 8-150 835-989 (1394)
299 cd03217 ABC_FeS_Assembly ABC-t 99.9 4E-27 8.7E-32 200.1 15.2 114 9-153 77-192 (200)
300 cd03247 ABCC_cytochrome_bd The 99.9 2.5E-27 5.3E-32 197.7 13.5 105 8-147 74-178 (178)
301 PRK13539 cytochrome c biogenes 99.9 3.8E-27 8.3E-32 201.1 14.9 128 8-140 72-200 (207)
302 COG3845 ABC-type uncharacteriz 99.9 2.4E-27 5.2E-32 220.7 14.7 141 8-148 78-223 (501)
303 PRK15064 ABC transporter ATP-b 99.9 4.3E-27 9.4E-32 226.6 16.3 139 9-155 382-526 (530)
304 COG4608 AppF ABC-type oligopep 99.9 2.9E-27 6.3E-32 207.1 13.0 118 41-158 82-203 (268)
305 PRK15177 Vi polysaccharide exp 99.9 1.2E-26 2.6E-31 199.3 16.2 136 15-154 55-192 (213)
306 TIGR01271 CFTR_protein cystic 99.9 3.6E-27 7.9E-32 249.3 15.8 139 8-155 1291-1441(1490)
307 PTZ00265 multidrug resistance 99.9 3.2E-27 6.9E-32 248.9 15.0 132 9-141 460-655 (1466)
308 PTZ00243 ABC transporter; Prov 99.9 2.6E-27 5.7E-32 250.9 14.1 139 8-155 1383-1534(1560)
309 cd03229 ABC_Class3 This class 99.9 4.9E-27 1.1E-31 196.0 12.4 102 8-142 75-178 (178)
310 PRK13540 cytochrome c biogenes 99.9 8.8E-27 1.9E-31 197.8 13.8 124 8-136 73-197 (200)
311 cd03271 ABC_UvrA_II The excisi 99.9 1E-26 2.2E-31 205.6 14.6 133 11-149 118-261 (261)
312 cd03290 ABCC_SUR1_N The SUR do 99.9 1.1E-26 2.4E-31 199.4 14.2 126 9-142 79-218 (218)
313 TIGR00956 3a01205 Pleiotropic 99.9 1.8E-26 3.9E-31 242.6 18.4 146 8-153 137-299 (1394)
314 cd03250 ABCC_MRP_domain1 Domai 99.9 9E-27 1.9E-31 198.0 13.1 129 10-142 67-204 (204)
315 COG5265 ATM1 ABC-type transpor 99.9 4.3E-27 9.3E-32 215.4 11.6 146 8-157 336-489 (497)
316 TIGR01189 ccmA heme ABC export 99.9 1.6E-26 3.4E-31 195.8 14.3 123 9-136 73-196 (198)
317 cd03291 ABCC_CFTR1 The CFTR su 99.9 3.4E-26 7.3E-31 204.6 17.0 141 10-155 99-248 (282)
318 PRK13541 cytochrome c biogenes 99.9 1.9E-26 4E-31 195.1 13.3 123 9-136 70-193 (195)
319 KOG0061|consensus 99.9 1.6E-26 3.4E-31 226.0 14.7 147 8-154 103-260 (613)
320 PRK11819 putative ABC transpor 99.9 3.7E-26 8.1E-31 221.4 17.2 140 10-154 388-533 (556)
321 PRK10938 putative molybdenum t 99.9 1.3E-26 2.7E-31 221.3 13.5 139 9-147 336-485 (490)
322 KOG0056|consensus 99.9 2.4E-27 5.2E-32 220.3 8.2 146 8-157 611-764 (790)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.4E-26 9.6E-31 220.7 17.3 140 10-154 386-531 (552)
324 cd03214 ABC_Iron-Siderophores_ 99.9 1.3E-26 2.9E-31 193.7 10.7 96 51-146 81-179 (180)
325 PLN03232 ABC transporter C fam 99.9 2.9E-26 6.3E-31 242.6 15.8 139 8-155 678-829 (1495)
326 cd03236 ABC_RNaseL_inhibitor_d 99.9 6E-26 1.3E-30 200.2 14.8 131 10-147 88-220 (255)
327 COG4586 ABC-type uncharacteriz 99.9 2.4E-26 5.2E-31 200.8 11.9 149 9-157 97-249 (325)
328 cd03223 ABCD_peroxisomal_ALDP 99.9 8.3E-26 1.8E-30 186.9 13.2 100 9-141 64-163 (166)
329 COG4618 ArpD ABC-type protease 99.9 4.2E-26 9E-31 212.9 12.5 145 8-155 409-561 (580)
330 cd03270 ABC_UvrA_I The excisio 99.9 3.7E-25 8E-30 191.7 17.3 99 49-147 118-226 (226)
331 cd03228 ABCC_MRP_Like The MRP 99.9 8.6E-26 1.9E-30 187.4 12.2 96 9-142 76-171 (171)
332 PLN03130 ABC transporter C fam 99.9 1.2E-25 2.5E-30 239.0 15.4 139 8-155 678-829 (1622)
333 PRK10522 multidrug transporter 99.9 1.4E-25 3E-30 216.9 14.0 129 8-147 396-531 (547)
334 TIGR02857 CydD thiol reductant 99.9 5.8E-26 1.3E-30 218.4 11.4 123 8-138 395-529 (529)
335 PLN03140 ABC transporter G fam 99.9 1.5E-25 3.3E-30 235.8 15.3 147 8-154 238-427 (1470)
336 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.4E-25 3E-30 217.3 14.0 128 9-146 416-551 (555)
337 PRK10636 putative ABC transpor 99.9 4.5E-25 9.7E-30 217.0 16.2 136 9-153 375-516 (638)
338 COG4674 Uncharacterized ABC-ty 99.9 1.9E-25 4.2E-30 187.1 11.5 147 10-157 82-238 (249)
339 TIGR00954 3a01203 Peroxysomal 99.9 2.8E-25 6.1E-30 219.1 12.9 129 8-140 514-653 (659)
340 cd03216 ABC_Carb_Monos_I This 99.9 1.1E-24 2.4E-29 179.7 13.2 80 66-145 82-162 (163)
341 PTZ00243 ABC transporter; Prov 99.9 1.1E-24 2.4E-29 231.1 16.4 142 9-155 721-871 (1560)
342 PRK11147 ABC transporter ATPas 99.9 1.3E-24 2.7E-29 213.7 15.4 138 10-152 383-526 (635)
343 cd03238 ABC_UvrA The excision 99.9 2.4E-24 5.3E-29 180.2 14.3 95 49-143 68-166 (176)
344 TIGR00957 MRP_assoc_pro multi 99.9 9.4E-25 2E-29 231.5 14.5 142 10-155 700-851 (1522)
345 COG4167 SapF ABC-type antimicr 99.9 4.5E-24 9.8E-29 177.5 14.9 151 8-158 86-243 (267)
346 TIGR01271 CFTR_protein cystic 99.9 3.4E-24 7.3E-29 226.9 17.7 141 10-155 488-637 (1490)
347 PRK13409 putative ATPase RIL; 99.9 2.9E-24 6.3E-29 209.4 14.8 122 10-141 161-287 (590)
348 COG1129 MglA ABC-type sugar tr 99.9 3.5E-24 7.5E-29 202.3 14.7 143 9-151 334-487 (500)
349 TIGR02868 CydC thiol reductant 99.9 1E-24 2.2E-29 209.9 10.6 111 8-126 407-529 (529)
350 PLN03073 ABC transporter F fam 99.9 1.2E-23 2.5E-28 209.0 18.3 135 9-152 572-712 (718)
351 COG1119 ModF ABC-type molybden 99.9 2E-24 4.3E-29 186.5 9.6 141 8-148 105-256 (257)
352 COG4619 ABC-type uncharacteriz 99.9 6.9E-25 1.5E-29 180.0 5.7 133 8-143 76-212 (223)
353 PRK10636 putative ABC transpor 99.9 3.3E-23 7.1E-28 203.9 17.7 107 44-153 125-235 (638)
354 PRK11147 ABC transporter ATPas 99.9 4.3E-23 9.2E-28 203.0 18.0 106 44-153 135-242 (635)
355 COG1134 TagH ABC-type polysacc 99.9 4.7E-23 1E-27 178.0 15.2 138 18-155 98-237 (249)
356 PRK00349 uvrA excinuclease ABC 99.9 4.9E-23 1.1E-27 208.4 16.4 133 21-155 434-586 (943)
357 KOG0054|consensus 99.9 1.9E-23 4.2E-28 215.3 13.2 139 9-155 582-732 (1381)
358 COG4107 PhnK ABC-type phosphon 99.9 2.9E-23 6.3E-28 171.6 11.4 143 10-156 90-243 (258)
359 COG4136 ABC-type uncharacteriz 99.9 1.1E-23 2.3E-28 170.4 6.9 129 8-137 76-206 (213)
360 COG1101 PhnK ABC-type uncharac 99.9 1E-22 2.3E-27 172.9 11.6 143 8-150 79-234 (263)
361 cd03222 ABC_RNaseL_inhibitor T 99.9 1.7E-22 3.7E-27 169.2 12.4 84 67-150 72-159 (177)
362 TIGR00630 uvra excinuclease AB 99.9 3.5E-22 7.5E-27 201.9 17.0 132 22-154 433-583 (924)
363 PRK00349 uvrA excinuclease ABC 99.9 4.3E-22 9.3E-27 201.6 17.3 128 23-156 791-929 (943)
364 COG0488 Uup ATPase components 99.9 2.5E-22 5.4E-27 192.7 14.1 141 9-152 66-238 (530)
365 PRK00635 excinuclease ABC subu 99.9 5.8E-22 1.3E-26 208.9 17.7 135 20-155 759-907 (1809)
366 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.9E-22 6.3E-27 162.1 11.3 75 65-142 69-144 (144)
367 cd03278 ABC_SMC_barmotin Barmo 99.9 4.4E-22 9.5E-27 169.3 11.9 112 8-140 75-190 (197)
368 KOG0054|consensus 99.9 1.1E-22 2.5E-27 209.6 9.9 145 8-157 1213-1365(1381)
369 TIGR00630 uvra excinuclease AB 99.9 1.1E-21 2.4E-26 198.3 16.5 124 23-152 789-923 (924)
370 PLN03073 ABC transporter F fam 99.9 1.1E-21 2.5E-26 194.8 14.6 106 45-153 321-430 (718)
371 COG0396 sufC Cysteine desulfur 99.9 3.9E-21 8.5E-26 164.6 15.9 151 4-155 76-234 (251)
372 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.6E-21 3.5E-26 159.2 11.7 76 67-142 81-157 (157)
373 cd03273 ABC_SMC2_euk Eukaryoti 99.9 5.3E-22 1.1E-26 174.2 7.0 131 8-139 76-242 (251)
374 cd03272 ABC_SMC3_euk Eukaryoti 99.8 5E-21 1.1E-25 166.6 10.3 129 9-139 98-234 (243)
375 cd03240 ABC_Rad50 The catalyti 99.8 6E-21 1.3E-25 163.1 9.7 115 8-140 70-197 (204)
376 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.8E-20 3.9E-25 160.8 12.4 124 8-142 75-210 (213)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.8 2.4E-22 5.1E-27 172.8 0.5 131 9-140 59-204 (212)
378 PRK00635 excinuclease ABC subu 99.8 4.9E-20 1.1E-24 194.4 17.0 132 22-154 425-572 (1809)
379 cd03276 ABC_SMC6_euk Eukaryoti 99.8 4.9E-20 1.1E-24 156.8 12.6 117 8-142 68-192 (198)
380 KOG0065|consensus 99.8 5.1E-21 1.1E-25 194.5 7.3 144 8-151 863-1018(1391)
381 COG4778 PhnL ABC-type phosphon 99.8 1.1E-20 2.4E-25 155.6 7.6 133 8-140 92-227 (235)
382 COG4138 BtuD ABC-type cobalami 99.8 1.1E-21 2.5E-26 162.2 0.2 143 8-155 71-222 (248)
383 COG3845 ABC-type uncharacteriz 99.8 7.6E-20 1.7E-24 170.7 11.2 146 6-151 331-489 (501)
384 COG0488 Uup ATPase components 99.8 3.7E-19 8E-24 170.9 15.1 135 9-153 385-524 (530)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.8 5.6E-19 1.2E-23 154.8 11.5 79 62-140 151-233 (247)
386 COG4133 CcmA ABC-type transpor 99.8 9.3E-19 2E-23 146.0 11.1 117 10-129 76-193 (209)
387 COG4170 SapD ABC-type antimicr 99.8 3.4E-19 7.3E-24 151.4 6.8 150 8-157 88-251 (330)
388 KOG0062|consensus 99.7 2.5E-17 5.4E-22 154.5 10.9 131 7-145 425-559 (582)
389 cd03239 ABC_SMC_head The struc 99.7 6.3E-17 1.4E-21 135.6 10.8 74 67-140 95-172 (178)
390 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3.6E-17 7.9E-22 140.7 9.0 84 60-143 120-212 (213)
391 COG1245 Predicted ATPase, RNas 99.7 9.9E-17 2.2E-21 148.9 11.2 128 8-139 400-530 (591)
392 COG0178 UvrA Excinuclease ATPa 99.7 1.1E-15 2.3E-20 149.8 15.7 127 23-155 783-920 (935)
393 KOG0927|consensus 99.7 2.8E-16 6E-21 148.2 11.1 107 45-153 198-308 (614)
394 PF00005 ABC_tran: ABC transpo 99.7 1.1E-16 2.3E-21 127.1 6.1 75 8-95 58-137 (137)
395 COG1245 Predicted ATPase, RNas 99.7 2.8E-16 6E-21 145.9 9.1 93 47-139 193-287 (591)
396 cd03241 ABC_RecN RecN ATPase i 99.7 3.6E-16 7.9E-21 139.3 9.3 79 64-143 168-250 (276)
397 cd03227 ABC_Class2 ABC-type Cl 99.6 7.7E-16 1.7E-20 126.7 9.4 77 64-140 75-155 (162)
398 KOG0062|consensus 99.6 2.3E-16 4.9E-21 148.1 5.1 104 48-154 178-285 (582)
399 COG4178 ABC-type uncharacteriz 99.6 1.2E-15 2.6E-20 147.2 9.5 121 8-134 455-582 (604)
400 cd03280 ABC_MutS2 MutS2 homolo 99.6 1E-15 2.2E-20 130.1 7.8 94 52-146 76-171 (200)
401 TIGR00618 sbcc exonuclease Sbc 99.6 2.2E-15 4.8E-20 155.7 11.6 82 60-141 944-1036(1042)
402 TIGR00634 recN DNA repair prot 99.6 2.4E-15 5.1E-20 146.4 10.3 77 65-142 439-519 (563)
403 KOG0065|consensus 99.6 1.5E-15 3.2E-20 155.1 8.5 147 8-154 188-351 (1391)
404 PHA02562 46 endonuclease subun 99.6 2.2E-15 4.8E-20 145.8 9.3 80 62-143 464-555 (562)
405 KOG0927|consensus 99.6 1.8E-15 3.8E-20 142.8 7.6 104 43-149 484-591 (614)
406 PRK10869 recombination and rep 99.5 2.6E-14 5.5E-19 138.8 10.8 76 66-142 430-509 (553)
407 COG0178 UvrA Excinuclease ATPa 99.5 1.8E-13 3.9E-18 134.4 16.3 143 21-166 426-587 (935)
408 PRK03918 chromosome segregatio 99.5 2.6E-14 5.7E-19 145.1 10.5 80 61-140 783-868 (880)
409 PRK01156 chromosome segregatio 99.5 2.5E-13 5.5E-18 138.5 13.5 78 62-139 797-883 (895)
410 PRK10246 exonuclease subunit S 99.5 1.3E-13 2.9E-18 142.5 11.2 80 61-140 944-1032(1047)
411 TIGR00606 rad50 rad50. This fa 99.5 1.4E-13 3.1E-18 145.2 10.7 70 62-131 1195-1275(1311)
412 KOG0066|consensus 99.4 4.4E-13 9.5E-18 124.5 10.3 122 10-141 651-778 (807)
413 TIGR02168 SMC_prok_B chromosom 99.4 2.8E-13 6.1E-18 140.1 8.1 78 61-139 1084-1165(1179)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.4 2.5E-13 5.4E-18 117.6 6.2 96 48-148 73-175 (222)
415 cd03242 ABC_RecF RecF is a rec 99.4 5.5E-13 1.2E-17 118.5 8.1 76 64-143 181-269 (270)
416 KOG0066|consensus 99.4 8.4E-14 1.8E-18 129.2 2.9 99 44-145 388-489 (807)
417 cd03243 ABC_MutS_homologs The 99.4 1.3E-12 2.8E-17 111.1 7.8 91 61-152 86-177 (202)
418 KOG0060|consensus 99.4 1.5E-12 3.2E-17 124.1 8.5 124 9-140 501-641 (659)
419 KOG2355|consensus 99.3 2E-12 4.3E-17 110.0 7.4 105 47-152 129-235 (291)
420 PRK02224 chromosome segregatio 99.3 5E-12 1.1E-16 128.7 9.5 79 63-141 778-869 (880)
421 TIGR02169 SMC_prok_A chromosom 99.3 5.5E-12 1.2E-16 130.9 9.0 79 61-140 1069-1151(1164)
422 PRK00064 recF recombination pr 99.3 9.1E-12 2E-16 115.2 8.8 78 63-143 270-359 (361)
423 smart00534 MUTSac ATPase domai 99.3 2.5E-12 5.4E-17 108.1 4.5 93 50-143 44-139 (185)
424 cd03283 ABC_MutS-like MutS-lik 99.2 2.2E-11 4.7E-16 103.8 7.6 99 12-139 62-164 (199)
425 COG4615 PvdE ABC-type sideroph 99.2 3.1E-11 6.8E-16 111.0 5.7 102 45-146 421-529 (546)
426 cd03282 ABC_MSH4_euk MutS4 hom 99.1 1.8E-10 3.8E-15 98.6 7.5 82 49-131 73-156 (204)
427 KOG0063|consensus 99.1 2.7E-10 5.9E-15 105.7 8.4 131 5-139 398-531 (592)
428 TIGR00611 recf recF protein. A 99.1 2.1E-10 4.5E-15 106.4 7.0 63 65-130 274-345 (365)
429 KOG0064|consensus 99.1 1.2E-10 2.6E-15 110.3 5.1 114 10-131 546-674 (728)
430 KOG0063|consensus 99.0 2.6E-10 5.7E-15 105.8 6.1 93 47-139 193-287 (592)
431 COG0419 SbcC ATPase involved i 99.0 8.3E-10 1.8E-14 113.1 10.5 80 62-141 811-898 (908)
432 PF02463 SMC_N: RecF/RecN/SMC 99.0 7.1E-09 1.5E-13 88.8 12.1 87 46-138 121-211 (220)
433 COG2401 ABC-type ATPase fused 99.0 1.9E-09 4.2E-14 99.9 9.0 98 47-144 485-588 (593)
434 TIGR02680 conserved hypothetic 99.0 9.4E-10 2E-14 116.6 7.7 64 61-127 1242-1317(1353)
435 cd03284 ABC_MutS1 MutS1 homolo 98.9 1E-09 2.2E-14 94.7 5.1 87 65-153 84-180 (216)
436 cd01124 KaiC KaiC is a circadi 98.9 3.6E-09 7.8E-14 87.8 8.0 80 60-139 65-163 (187)
437 PRK00409 recombination and DNA 98.9 2.5E-09 5.4E-14 107.8 7.7 77 61-138 385-463 (782)
438 PRK14079 recF recombination pr 98.9 5.3E-09 1.1E-13 96.4 8.1 76 65-146 262-346 (349)
439 PF13304 AAA_21: AAA domain; P 98.8 2.7E-08 5.8E-13 83.7 8.5 66 64-129 234-302 (303)
440 cd03281 ABC_MSH5_euk MutS5 hom 98.8 2.8E-08 6.1E-13 85.5 8.1 67 65-131 87-159 (213)
441 TIGR01069 mutS2 MutS2 family p 98.7 3.7E-08 8E-13 99.2 7.5 68 61-129 380-448 (771)
442 PF13558 SbcCD_C: Putative exo 98.6 5.4E-08 1.2E-12 72.7 5.7 51 61-111 27-90 (90)
443 PRK13695 putative NTPase; Prov 98.6 8.5E-08 1.9E-12 79.4 6.0 81 62-146 74-156 (174)
444 PTZ00132 GTP-binding nuclear p 98.5 9.4E-08 2E-12 81.6 5.2 50 65-114 149-205 (215)
445 PRK13830 conjugal transfer pro 98.5 1.8E-07 4E-12 95.0 7.4 68 82-149 650-728 (818)
446 cd01128 rho_factor Transcripti 98.5 5.9E-08 1.3E-12 85.5 2.4 76 65-144 128-212 (249)
447 TIGR02858 spore_III_AA stage I 98.3 1.5E-06 3.3E-11 77.5 7.6 78 67-153 177-268 (270)
448 cd03286 ABC_MSH6_euk MutS6 hom 98.2 7E-06 1.5E-10 71.0 8.7 61 71-131 96-158 (218)
449 cd01125 repA Hexameric Replica 98.1 6.5E-06 1.4E-10 71.7 5.6 85 40-127 52-160 (239)
450 PRK08533 flagellar accessory p 98.0 1.4E-05 3.1E-10 69.5 7.5 62 66-128 95-164 (230)
451 cd03287 ABC_MSH3_euk MutS3 hom 98.0 2.5E-05 5.4E-10 67.8 8.2 60 71-130 97-158 (222)
452 PRK06067 flagellar accessory p 98.0 3.2E-05 6.9E-10 67.0 8.8 63 66-128 100-167 (234)
453 PRK13891 conjugal transfer pro 97.9 3.4E-05 7.4E-10 79.0 7.6 54 77-130 680-734 (852)
454 KOG0964|consensus 97.8 1.4E-05 2.9E-10 80.4 2.9 74 64-138 1095-1172(1200)
455 TIGR03185 DNA_S_dndD DNA sulfu 97.8 4.6E-05 1E-09 75.8 6.5 62 63-128 548-616 (650)
456 PF13175 AAA_15: AAA ATPase do 97.8 8.4E-05 1.8E-09 68.8 7.7 66 63-128 338-414 (415)
457 cd01120 RecA-like_NTPases RecA 97.7 0.00015 3.3E-09 57.6 8.1 65 65-129 66-140 (165)
458 PRK07721 fliI flagellum-specif 97.7 0.0001 2.3E-09 70.0 7.5 86 65-151 222-340 (438)
459 COG3910 Predicted ATPase [Gene 97.6 0.00031 6.8E-09 59.5 8.7 82 61-143 124-206 (233)
460 COG1196 Smc Chromosome segrega 97.6 0.0001 2.2E-09 77.9 6.9 73 62-135 1062-1138(1163)
461 COG4637 Predicted ATPase [Gene 97.5 0.00045 9.8E-09 62.6 8.7 73 65-138 269-345 (373)
462 TIGR02655 circ_KaiC circadian 97.5 6.5E-06 1.4E-10 79.1 -3.3 69 61-139 110-190 (484)
463 TIGR00152 dephospho-CoA kinase 97.3 0.00011 2.4E-09 61.5 2.1 71 69-141 60-133 (188)
464 PRK13873 conjugal transfer ATP 97.2 0.00065 1.4E-08 69.3 6.7 49 81-129 632-681 (811)
465 PF13166 AAA_13: AAA domain 97.1 0.0026 5.6E-08 63.7 9.4 66 64-129 498-574 (712)
466 TIGR02788 VirB11 P-type DNA tr 97.0 0.00055 1.2E-08 62.1 3.4 72 74-153 208-280 (308)
467 PRK13898 type IV secretion sys 97.0 0.0018 4E-08 66.0 7.2 50 80-129 638-688 (800)
468 PRK05399 DNA mismatch repair p 96.7 0.0053 1.2E-07 63.1 8.4 68 64-133 664-737 (854)
469 KOG0933|consensus 96.7 0.00088 1.9E-08 68.0 2.5 70 64-134 1080-1153(1174)
470 cd01131 PilT Pilus retraction 96.7 0.0024 5.3E-08 54.1 4.4 56 76-138 66-121 (198)
471 KOG0996|consensus 96.5 0.0025 5.3E-08 65.8 3.8 77 62-139 1191-1271(1293)
472 COG1195 RecF Recombinational D 96.4 0.0079 1.7E-07 55.8 6.3 75 65-143 274-361 (363)
473 TIGR03880 KaiC_arch_3 KaiC dom 96.2 0.01 2.2E-07 50.9 5.9 57 83-139 106-177 (224)
474 PRK06793 fliI flagellum-specif 96.2 0.0064 1.4E-07 57.8 4.7 80 65-149 220-306 (432)
475 COG0497 RecN ATPase involved i 96.0 0.041 8.8E-07 53.7 9.1 75 65-140 430-508 (557)
476 PRK08699 DNA polymerase III su 95.9 0.01 2.2E-07 54.3 4.8 42 88-130 116-157 (325)
477 PF09818 ABC_ATPase: Predicted 95.8 0.036 7.8E-07 52.5 7.9 79 65-143 321-416 (448)
478 KOG0018|consensus 95.7 0.017 3.7E-07 59.4 5.6 79 60-141 1045-1127(1141)
479 KOG0962|consensus 95.7 0.016 3.5E-07 60.9 5.5 66 65-130 1182-1258(1294)
480 COG3044 Predicted ATPase of th 95.6 0.038 8.3E-07 52.0 7.0 81 64-144 318-412 (554)
481 PRK14088 dnaA chromosomal repl 94.9 0.036 7.8E-07 52.8 4.6 68 83-150 193-264 (440)
482 PRK06995 flhF flagellar biosyn 94.8 0.14 2.9E-06 49.5 8.4 127 9-144 287-430 (484)
483 PF00488 MutS_V: MutS domain V 94.5 0.26 5.6E-06 43.0 8.7 66 65-130 101-170 (235)
484 smart00382 AAA ATPases associa 94.5 0.39 8.5E-06 36.0 8.8 61 65-125 59-125 (148)
485 COG4694 Uncharacterized protei 94.3 0.12 2.6E-06 50.2 6.7 64 66-129 529-600 (758)
486 PRK09302 circadian clock prote 94.2 0.059 1.3E-06 52.1 4.5 57 83-139 129-200 (509)
487 TIGR01420 pilT_fam pilus retra 93.7 0.093 2E-06 48.3 4.6 58 74-138 185-242 (343)
488 cd00561 CobA_CobO_BtuR ATP:cor 93.7 0.16 3.4E-06 41.9 5.5 66 74-140 83-154 (159)
489 PRK00454 engB GTP-binding prot 93.5 0.16 3.5E-06 41.8 5.4 66 47-116 126-196 (196)
490 PRK13764 ATPase; Provisional 93.4 0.3 6.5E-06 48.4 7.8 63 79-148 319-399 (602)
491 PRK04296 thymidine kinase; Pro 93.3 0.26 5.5E-06 41.4 6.4 55 82-140 76-141 (190)
492 PF13514 AAA_27: AAA domain 93.3 0.18 3.9E-06 53.5 6.4 66 64-130 1023-1096(1111)
493 TIGR03881 KaiC_arch_4 KaiC dom 93.0 0.43 9.3E-06 40.8 7.4 56 84-139 121-188 (229)
494 PTZ00454 26S protease regulato 92.9 0.31 6.8E-06 45.9 6.8 64 76-143 230-307 (398)
495 cd02023 UMPK Uridine monophosp 92.5 0.1 2.3E-06 43.6 2.8 88 8-99 25-113 (198)
496 TIGR00416 sms DNA repair prote 92.2 0.34 7.4E-06 46.4 6.2 60 83-142 169-247 (454)
497 COG4913 Uncharacterized protei 92.0 0.38 8.2E-06 48.2 6.3 73 65-140 989-1077(1104)
498 PRK06893 DNA replication initi 91.3 0.41 8.8E-06 41.4 5.3 45 82-126 89-134 (229)
499 PRK04863 mukB cell division pr 91.0 0.16 3.5E-06 55.2 2.8 61 64-128 1363-1441(1486)
500 TIGR02903 spore_lon_C ATP-depe 90.9 0.68 1.5E-05 46.1 6.9 49 46-111 242-291 (615)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-44 Score=303.85 Aligned_cols=155 Identities=32% Similarity=0.468 Sum_probs=144.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYAS-LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+++|+|||+++|||++||.||+.++.. ..+.++++.++++.++|+++||.+ .+.++++|||||||||+|||||+.+|
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999998654 467899999999999999999986 79999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCCCcHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLE 162 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~~~l~ 162 (249)
+++|+|||||+|||+...++.+.+++|+++|.|.++|||++.+++. ||||++|++|+++++|+|++++.+...+...
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~ 233 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTR 233 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHH
Confidence 9999999999999999999999999999999999999999999987 9999999999999999999999876544433
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=307.29 Aligned_cols=151 Identities=30% Similarity=0.456 Sum_probs=145.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.++|||+||+++|+...||++|++|+..+.+.+++++++|+.++++.+||++ .++++.+|||||||||+|||||+.+|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK 161 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999999987 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
+||.|||||+|||.+.+.++++|+++.++ |.||+++||.|+.++. |||+++|++|+++++|+..+++.+...
T Consensus 162 iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 162 ILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 99999999999999999999999999877 9999999999999987 999999999999999999999987653
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-41 Score=290.57 Aligned_cols=151 Identities=30% Similarity=0.531 Sum_probs=143.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC---CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP---DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.++||||-|+..|||++||.|||.+...+.+.++++++++++++++++||+. .+|++++|||||||||.+||||+.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 5789999999999999999999999999888899999999999999999963 6999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
|++||+||||++|||.+|.++++.+.++.++ |+|||+||||++|+.. +|||++|++|+++..++|+++..+...
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan 229 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccH
Confidence 9999999999999999999999999999877 9999999999999965 999999999999999999999987653
No 4
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-40 Score=290.36 Aligned_cols=151 Identities=25% Similarity=0.397 Sum_probs=144.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+++++|||++.|+|+.||.||+.|+..+.+.+++++++++.++++.+||.. .++++++|||||||||.|||||+.+|+
T Consensus 105 r~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~ 184 (386)
T COG4175 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184 (386)
T ss_pred hhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCC
Confidence 5689999999999999999999999999999999999999999999999986 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
|||+|||+|+|||--|.++++.|.+|.++ ++||+++|||++|+.. .|||++|++|+|+..|+|+|+..+...
T Consensus 185 IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAn 258 (386)
T COG4175 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPAN 258 (386)
T ss_pred EEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccH
Confidence 99999999999999999999999999876 9999999999999965 999999999999999999999987653
No 5
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-39 Score=271.43 Aligned_cols=161 Identities=32% Similarity=0.525 Sum_probs=152.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.++||+++.+..+|..+|++|||.|+++++++.+.+.+++++++.+.++|.. .++++.++|.||||||+|||||+|+|+
T Consensus 74 rr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 74 RRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred hhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999999987 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCCCcHHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~~~l~~~~ 165 (249)
+++|||||||||..+++.+.+.+++++++|++||++||.|++++. ||+|+++++|+++..|+++++........++..|
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le~~f 233 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIF 233 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHHHHH
Confidence 999999999999999999999999999889999999999999986 9999999999999999999998887777777776
Q ss_pred HHH
Q psy4634 166 LRL 168 (249)
Q Consensus 166 ~~~ 168 (249)
...
T Consensus 234 ~~~ 236 (245)
T COG4555 234 AFA 236 (245)
T ss_pred HHh
Confidence 653
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.8e-39 Score=274.72 Aligned_cols=148 Identities=32% Similarity=0.482 Sum_probs=139.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+++|++||+..||..+||+||+.|..+-+ +++++.+++.+..-++.+||+. .++++++|||||++|++||||++.+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 356999999999999999999999987765 5888999999999999999974 6899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+++++||||+||||.+...+-++|+++++. |.|+++||||++++.. |||++++.+|+|+.+|+++++.+.
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887 9999999999999976 999999999999999999999875
No 7
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=274.60 Aligned_cols=139 Identities=31% Similarity=0.407 Sum_probs=129.2
Q ss_pred CCCCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 6 LGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 6 ~~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
-|...+|||||++.|+|++||.||+.++....+.++++.+++++++++.+||.. .++++++|||||||||+|||||+.+
T Consensus 69 ~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 69 GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred CCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcC
Confidence 457789999999999999999999999999877788888889999999999986 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeC--CEEE
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRK--GVLL 144 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~--G~iv 144 (249)
|++|||||||++||..++..+++.+.++.++ ++||++||||++|+-. +|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999998665 9999999999999965 999999999 5553
No 8
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=280.46 Aligned_cols=151 Identities=30% Similarity=0.473 Sum_probs=141.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR--ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.++||||||+..+|++|||.|||+|+..... .++.+++.++.++|+.++|+. .++++.+|||||||||++||||+.+
T Consensus 76 ~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred hcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence 6789999999999999999999999987653 456788999999999999987 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
|++||||||+++||..-+.++..+|+++.++ |.|+++||||.+++.. ||||++|++|+|...|+++|+....+.
T Consensus 156 P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 156 PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred CCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 9999999999999999999999999999877 9999999999999976 999999999999999999999876553
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=286.45 Aligned_cols=150 Identities=30% Similarity=0.410 Sum_probs=144.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
++.||||||+..|||+|||+||++|+.+.++.++++++++++++.+.+++.+ .+|++++|||||||||+|||||+++|+
T Consensus 74 ~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 74 KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999999987 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
++|||||+|+||...|..+...|+++.++ |.|+|++|||-.|+.. +|||++|++|+|...|+|.|+..+..
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999876 9999999999999986 99999999999999999999987654
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.4e-38 Score=280.74 Aligned_cols=148 Identities=43% Similarity=0.760 Sum_probs=139.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+++|||+||++.+|+.+|++||+.|.+++++.+....+++++++++.++|++ .++++++||+|||||++||+||+++|+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999999998776667789999999999986 678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNG-QTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+||||.++..++++|++++++| +||++|||.+++++. ||+|++|++|+++++|+++++...
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999999999999886 899999999999987 999999999999999999987654
No 11
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=287.93 Aligned_cols=150 Identities=31% Similarity=0.468 Sum_probs=140.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
++.||+|||+..|||+|||+|||+|+.+..+ .+++++++++.++++.++|.+ .+|++++|||||||||+|||||+.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 6789999999999999999999999998544 556778999999999999986 79999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
++||||||.|+||..-|.+++..++++.++ |.|.|++|||-+|+.. +|||++|++|+|...|+|+|+.....
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 999999999999999999999999999776 9999999999999976 99999999999999999999987654
No 12
>KOG0055|consensus
Probab=100.00 E-value=6.6e-38 Score=315.89 Aligned_cols=231 Identities=26% Similarity=0.370 Sum_probs=167.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCCCC-C----CCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE---VLDLPPD-H----RTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~-~----~~~~~LSgGqkQRv~iAr 79 (249)
..+||.|+|+|.||.. |++|||.|+.. +.+.+++.+.++.+.. ...+++. + ..-.+||||||||+||||
T Consensus 426 r~~iglV~QePvlF~~-tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFAT-TIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HhhcCeeeechhhhcc-cHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence 3479999999999986 99999999754 4455666555543322 2334432 2 222579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcCCC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVD 159 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~~~ 159 (249)
||+++|+|||||||||+||+++++.++++|++. .+|+|.|+++|+++++++||+|++|++|+|++.|+|+||....+
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~-~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G-- 579 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKA-SKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGG-- 579 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHh-hcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccc--
Confidence 999999999999999999999999999999994 57999999999999999999999999999999999999988643
Q ss_pred cHHHHHHHHHhhhhhhh-------h-c------------------CCCC----C----CCCCCcCCC-------eEEEE-
Q psy4634 160 SLEEVFLRLCHQQNQAI-------E-A------------------EPEK----G----PNKKGLVGG-------VRVIE- 197 (249)
Q Consensus 160 ~l~~~~~~~~~~~~~~~-------~-~------------------~~~~----~----~~~~~~~~~-------~~~~~- 197 (249)
.|..++..+.... + . .+.. . +..++.... ..+++
T Consensus 580 ----~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i 655 (1228)
T KOG0055|consen 580 ----IYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRI 655 (1228)
T ss_pred ----hHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccccccccccHHHH
Confidence 2333222110000 0 0 0000 0 000000000 01111
Q ss_pred -----EecCeeEEeeehhhhhhHHhHHHHHHHhcccc---------------hhHHHHHHHHHhHhhhhccC
Q psy4634 198 -----ILAGYTIVLVLYNLINIAAMSLVQFVIYGQPY---------------GNFWLSYVLINFIGFTGIFF 249 (249)
Q Consensus 198 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 249 (249)
-.+.+.++|++++.++|+.+|+ |++.++..+ ..++++|+++|+++++++|+
T Consensus 656 ~k~~~pe~~~l~lG~i~a~i~G~~~P~-fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~ 726 (1228)
T KOG0055|consen 656 FKLNKPEWPYLLLGSLGAAIRGATYPL-FAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFL 726 (1228)
T ss_pred HHhccchhHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1237778999999999999999 777766554 35779999999999998863
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-37 Score=268.54 Aligned_cols=147 Identities=33% Similarity=0.499 Sum_probs=138.2
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+++|||+|+| .+|. -||.|.++|+....+.++++++++++++++.+++.+ .++.+.+|||||||||+||.+|+.+
T Consensus 78 ~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 78 RQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred hcceEEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 57799999999 3454 499999999999999999999999999999999987 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|++||||||||||||.+++++++.++++.++ |+|+|++|||++++.. |||+++|++|+++.+|+|.+++++
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999887 7999999999999976 999999999999999999998764
No 14
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.4e-36 Score=274.31 Aligned_cols=148 Identities=34% Similarity=0.619 Sum_probs=137.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.|||+||++.+|+.+|++||+.|.+..++.+..+..+++.++++.+++.. .++++++||||||||++||+||+++|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999998888887776777778889999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+||||.+++.++++|++++++|+|||++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999998779999999999999976 999999999999999999998754
No 15
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.3e-36 Score=276.70 Aligned_cols=149 Identities=27% Similarity=0.424 Sum_probs=138.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.++|||+||++.+++.+||+||+.++....+.++++.++++.++++.+++.+ .++++++|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4579999999999999999999999877666777777888999999999986 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||++|||.++..++++|++++++ |.|||++||+++.+.. ||+|++|++|++++.|++++++...
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 99999999999999999999999999776 9999999999999976 9999999999999999999997653
No 16
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=278.16 Aligned_cols=149 Identities=27% Similarity=0.385 Sum_probs=138.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+++||+||+.|+.+.++.+..+..++++++++.++|.+ .++++++|||||||||+|||||+.+|+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3679999999999999999999999887666777777788999999999986 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||++||+.++..+++.|+++.++ |.|+|++|||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999998776 9999999999999976 9999999999999999999998754
No 17
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.4e-36 Score=277.50 Aligned_cols=149 Identities=23% Similarity=0.384 Sum_probs=139.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+.+||+||+.|+...++.++.+.+++++++++.++|.+ .++++++|||||||||+|||||+.+|+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ 157 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPD 157 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999887777777778888999999999986 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN--GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++.++++.|+++.++ |+|+|++|||++++.. ||+|++|++|+++..|+++++....
T Consensus 158 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 158 VLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999776 7999999999999976 9999999999999999999998754
No 18
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-36 Score=275.83 Aligned_cols=150 Identities=29% Similarity=0.433 Sum_probs=139.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.++||||||++.+|+++||+||+.|+...++.++.+..++++++++.+++.+ .++++++|||||||||+|||||+.+|+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~ 156 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPK 156 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999987777777788889999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+|||||||+|||+.++.++++.|+++.++ |+|+|++|||.+++.. ||+|++|++|+++..|+++++.....
T Consensus 157 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 157 VLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999766 9999999999999965 99999999999999999999987543
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.6e-36 Score=259.03 Aligned_cols=137 Identities=33% Similarity=0.447 Sum_probs=126.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-C-CCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-D-HRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.++||||||+.+|.+.+||.||+.++..+.+.+..+..++++++++.+|+.+ . ++++.+|||||||||+|||||+++|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 4579999999999999999999999887777665567788899999999975 4 4889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEE
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLL 144 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv 144 (249)
+++|.||||++||..+.+.+++++++++++ |+|+|+||||...+..|||++.|++|++.
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999776 99999999999999999999999999953
No 20
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.9e-36 Score=275.29 Aligned_cols=150 Identities=28% Similarity=0.467 Sum_probs=138.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+|||||++.+|+++||+||+.|+....+.+.++..+++.++++.++|+. .++++++|||||||||+|||||+.+|+
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999999999999999887777777777888999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+|||||||+||||.++..+++.+.++.++ |+|||++|||++++.. ||+|++|++|+++..|+++++..+..
T Consensus 150 iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~ 222 (363)
T TIGR01186 150 ILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPA 222 (363)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcc
Confidence 99999999999999999999999999765 9999999999999865 99999999999999999999987543
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.1e-36 Score=274.61 Aligned_cols=149 Identities=30% Similarity=0.453 Sum_probs=139.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+++||+||+.|+...++.++.+.+++++++++.++|.+ .++++++|||||||||+|||||+.+|+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999887667777778889999999999986 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||++||+.++..+++.|+++.++ |.|+|++|||++++.. ||+|++|++|++++.|+++++....
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998776 9999999999999976 9999999999999999999998754
No 22
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.1e-36 Score=266.95 Aligned_cols=150 Identities=27% Similarity=0.378 Sum_probs=135.1
Q ss_pred CCCCCcEEEEeCCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 5 SLGSTYIGFMPQETALFDEFTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 5 ~~~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
++ ++.+|||||++.....+||+|-+.++...+ +.+.++.++.++++++.+++.+ ++|.+.+|||||||||.|||
T Consensus 73 el-Ak~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 73 EL-AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred HH-hhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 44 778999999998888899999999886543 2234555668899999999987 79999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHh-ccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEAR-QANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~-~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|++|||||||+.||+.++.++++.+++++++ |+|||+++||++.+. .||++++|++|++++.|+|+|+.+.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 999999999999999999999999999999999855 999999999999985 5999999999999999999998875
No 23
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-36 Score=260.76 Aligned_cols=155 Identities=25% Similarity=0.500 Sum_probs=146.9
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 4 TSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 4 ~~~~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
++....+|||+|.+..||+.+||.|.+.|.+++.+++.+++++++..+++++++.. .++++.+||.|++||+.+..|++
T Consensus 67 ~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 67 SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred hhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh
Confidence 34446689999999999999999999999999999999999999999999999975 78999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
|+|+++|||||||||||.+.+.+.+.+.+++++|.|||+|||.|+.++. ||++++|++|+.|.+|+.+++.+.++.
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999987 999999999999999999999886653
No 24
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.4e-35 Score=267.05 Aligned_cols=147 Identities=36% Similarity=0.685 Sum_probs=136.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+++.+|++||+.+....++.+..+..++++++++.+++.+ .++++++||||||||++||+||+++|++
T Consensus 66 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 145 (302)
T TIGR01188 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV 145 (302)
T ss_pred hhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999999877777766666778899999999976 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|||||||+||||.+++.+++.|++++++|+|||++||+++++.. ||+|++|++|+++..|+++++...
T Consensus 146 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 146 LFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999999999998779999999999999976 999999999999999999998764
No 25
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.3e-35 Score=269.94 Aligned_cols=148 Identities=36% Similarity=0.629 Sum_probs=136.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.|||+||++.+++.+|++||+.+....++.+..+..++++++++.+++++ .++++++||||||||++||+||+++|+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999999999999998877777666666777888999999986 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+||||.++..++++|++++++|+|||++||+++++.. ||+|++|++|+++..|+++++...
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998779999999999999976 999999999999999999998764
No 26
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.3e-35 Score=272.99 Aligned_cols=149 Identities=28% Similarity=0.406 Sum_probs=138.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
++.|||+||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.+ .++++++|||||||||+|||||+.+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999877666677777788999999999986 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||++||+.++..+.+.|+++.++ |.|+|++|||.+++.. ||+|++|++|+++..|++++++.+.
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999775 9999999999999975 9999999999999999999998754
No 27
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-35 Score=272.54 Aligned_cols=149 Identities=28% Similarity=0.425 Sum_probs=138.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.|||+||++.+|+++||.||+.|+....+.+..+.++++.++++.+++.+ .++++++|||||||||+|||||+.+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999877666677778888999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||++||+.++..+.+.|+++.++ |.|+|++|||.+++.. ||++++|++|+++..|+++++..+.
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998665 9999999999999976 9999999999999999999998754
No 28
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.4e-35 Score=268.74 Aligned_cols=149 Identities=29% Similarity=0.456 Sum_probs=136.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.|||+||++.+|+.+||.||+.|+...+ +.+.++..+++.++++.+++++ .++++.+|||||||||+|||||+
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 357999999999999999999999986542 3455667788999999999976 78999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
.+|++|||||||+|||+.++..+++.|+++.++ |+|+|++|||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999776 8999999999999976 9999999999999999999998753
No 29
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-36 Score=252.01 Aligned_cols=150 Identities=23% Similarity=0.360 Sum_probs=136.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.++||+|||.|+.|| +|++||++|+.++.+...++..+.++..|+...|.+ .++....||||||||++|||||+
T Consensus 87 Rr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 87 RRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred HHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 578999999999999 799999999999998776888888999888877732 36667889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCCC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVD 159 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~~ 159 (249)
.+|++||||||||+|||.+..++-++|.+|+ +.-||++|||.|.-+.. +|+.+++..|++++.|+.++++.+...+
T Consensus 166 v~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~~ 242 (253)
T COG1117 166 VKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKHK 242 (253)
T ss_pred cCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccHH
Confidence 9999999999999999999999999999997 45899999999999865 9999999999999999999999876543
No 30
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-35 Score=256.85 Aligned_cols=146 Identities=27% Similarity=0.430 Sum_probs=126.7
Q ss_pred CCcEEEEeCCCCC---CCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETAL---FDEFTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l---~~~lTv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
..+||||||...+ || .||+|.+.+++..+ +...++.+++++++|+++|+.+ +++++++|||||+|||.|||
T Consensus 74 ~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR 152 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR 152 (254)
T ss_pred CCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence 3689999996533 44 69999999874322 1223344788999999999987 89999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|++|+|||||+|+|+.++..+.++|++++++|+||++||||++.+.. ||+|+.| ++++++.|+++++.+.
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~ 228 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH
Confidence 9999999999999999999999999999999999889999999999999975 9999999 5567789999998764
No 31
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-35 Score=268.57 Aligned_cols=149 Identities=32% Similarity=0.432 Sum_probs=136.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.|||+||++.+|+.+||+||+.|+...++.+.++.+++++++++.+++.+ .++++.+|||||||||+|||||+.+|+
T Consensus 74 ~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999999876666666677788999999999986 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|+++.++ |.|+|++||+++++.. ||+|++|++|+++..|+++++....
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999998765 9999999999999976 9999999999999999999997653
No 32
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.3e-34 Score=268.25 Aligned_cols=147 Identities=26% Similarity=0.450 Sum_probs=136.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
++|||+||++.+|+.+|+.||+.|+....+.++.+.++++.++++.++|.. .++++.+||||||||++|||||+++|++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999999877667777777788999999999976 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|||||||+||||.++..+++.|.+++++ |+|||++|||++++.. ||||++|++|+++..|+++++...
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999775 9999999999999965 999999999999999999999764
No 33
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.7e-34 Score=260.18 Aligned_cols=148 Identities=36% Similarity=0.626 Sum_probs=134.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+++.+|++||+.+....++.+..+.+++++++++.+++++ .++++++||||||||++|||||+++|+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999997766666555566677888999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999997779999999999999976 999999999999999999998654
No 34
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2.5e-34 Score=261.70 Aligned_cols=149 Identities=30% Similarity=0.460 Sum_probs=136.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.+ .++++++||||||||++|||||+++|+
T Consensus 41 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 41 LRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred HCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 3579999999999999999999999876656565666778889999999986 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+.+.|+++.++ |+|+|++||+++++.. ||++++|++|+++..|+++++....
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998765 9999999999999976 9999999999999999999997653
No 35
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.1e-35 Score=242.55 Aligned_cols=141 Identities=26% Similarity=0.429 Sum_probs=133.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.++||+|||+.-|.++.||+||++|..+..+.+++++++++.++|+.+||.+ .+..+.+|||||||||+||||++++|+
T Consensus 78 RR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred hheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 5789999999999999999999999999999999999999999999999987 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
+||-||||.+|||....++++++.++.+.|.||+|.|||.+.+.. --|++.+++|+++.+..
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999889999999999999987 77899999999987643
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-34 Score=250.15 Aligned_cols=147 Identities=34% Similarity=0.504 Sum_probs=131.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.|||+||++.+|+.+|+.||+.++...+ +.+.++..+++.++++.+++.. .++++++||||||||++|||||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 356999999999999999999999875543 3455556677889999999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++|||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 999999999999999999999999998774 8999999999999976 99999999999999999888764
No 37
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=263.37 Aligned_cols=149 Identities=28% Similarity=0.435 Sum_probs=136.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.|||+||++.+|+.+|+.||+.++...++.+.++..+++.++++.+++++ .++++++||||||||++|||||+++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999999877666666666778899999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 232 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP 232 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999765 9999999999999976 9999999999999999999987653
No 38
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.6e-35 Score=250.31 Aligned_cols=146 Identities=27% Similarity=0.404 Sum_probs=133.1
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.|-+|||+| ++-|..||++.|.-+....+.++. ++++.++++.+||+. .+|++++|||||+||++|||||+.
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 56799999998 678889999999888776665544 445899999999985 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|++||||||||+||+..+.++++++.+++++ |.|+|++|||++.+.. ||||++|++|++++.++.+++...
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999999999999999876 9999999999999987 999999999999999999998876
No 39
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-35 Score=243.27 Aligned_cols=154 Identities=27% Similarity=0.405 Sum_probs=141.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFY-ASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.++|+|||+++|+..+||.||+.-. ....+.++.+..++++.+|+.+|+.+ ++.++..||||||||++|||||+.+|+
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~ 172 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPE 172 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCc
Confidence 3589999999999999999998643 23457889999999999999999986 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCCCcHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLE 162 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~~~l~ 162 (249)
++|+|||||+|||+-..++++.+++|+++|+|.+++||.|.+++. +..|+++++|.|-++|+|++++.+.....+.
T Consensus 173 vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~S~Rlk 249 (256)
T COG4598 173 VMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSPRLK 249 (256)
T ss_pred eEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCCCHHHH
Confidence 999999999999999999999999999999999999999999987 9999999999999999999999876654443
No 40
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-34 Score=266.36 Aligned_cols=148 Identities=26% Similarity=0.424 Sum_probs=135.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+|+.+|+.||+.++...++.+.++.++++.++++.+++.+ .++++++||||||||++|||||+.+|++
T Consensus 106 ~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i 185 (400)
T PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI 185 (400)
T ss_pred CCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 479999999999999999999999877666666666778889999999976 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||+|++|++|+++..|+++++....
T Consensus 186 LLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 9999999999999999999999998754 8999999999999965 9999999999999999999987654
No 41
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.8e-35 Score=242.31 Aligned_cols=154 Identities=28% Similarity=0.408 Sum_probs=136.9
Q ss_pred cCCCCCCcEEEEeCCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 3 ATSLGSTYIGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 3 ~~~~~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
.+.-+.+.++++|||.+||.++||.+|+.++.... +++ .+.+++++.++.++||.. .+|.+.+|||||||||++||+
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARc 143 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARC 143 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHH
Confidence 33445677999999999999999999999876532 233 455788899999999986 689999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
|+++-+|||||||+|+|||.-|.++..++.++.++ +.|++||||.++++.. +|+++++++|+|.+.|+.+++.....
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999999999999776 9999999999999976 99999999999999999999886543
No 42
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.9e-34 Score=258.53 Aligned_cols=147 Identities=32% Similarity=0.609 Sum_probs=135.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+|+.||+.+....++.+.++..++++++++.+++.+ .++++++||||||||++|||||+++|+
T Consensus 74 ~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (301)
T TIGR03522 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPK 153 (301)
T ss_pred HhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999999999999999888777776666778899999999986 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+||||.+++.+++.|+++++ ++|||++||+++++.. ||||++|++|+++..|+++++...
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999864 7999999999999976 999999999999999999998654
No 43
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-34 Score=256.19 Aligned_cols=153 Identities=27% Similarity=0.363 Sum_probs=138.1
Q ss_pred CCCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHHHH
Q psy4634 7 GSTYIGFMPQET--ALFDEFTIAETFQFYASLYR-I-SSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVSIA 78 (249)
Q Consensus 7 ~~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~iA 78 (249)
-.+.|+|+||+| +|.|-+||.+.+.-....+. . .+++.++++.++++.++++. .+.++++|||||||||.||
T Consensus 86 RG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IA 165 (316)
T COG0444 86 RGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIA 165 (316)
T ss_pred cCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHH
Confidence 467899999997 67888999999987766543 3 46778899999999999974 2889999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
.||+.+|++||.||||++||...+.+++++|++++++ |.|+|++|||+..+.. ||||+||..|+|++.|+.++++.+.
T Consensus 166 mala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P 245 (316)
T COG0444 166 MALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNP 245 (316)
T ss_pred HHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999999999999875 9999999999999976 9999999999999999999999876
Q ss_pred CCC
Q psy4634 157 GVD 159 (249)
Q Consensus 157 ~~~ 159 (249)
.+.
T Consensus 246 ~HP 248 (316)
T COG0444 246 KHP 248 (316)
T ss_pred CCh
Confidence 543
No 44
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.1e-35 Score=244.36 Aligned_cols=149 Identities=28% Similarity=0.505 Sum_probs=136.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSE--EFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
...|||+||+++.|..+||.|||.........+.+ +.+.+++++++.+++.+ ++.+..+||||||+|+.|||||+.+
T Consensus 78 rlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred hcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 34699999999999999999999988887654333 45556889999999987 7889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|+.+||||||+|.||.+..+++++++.|++.|..|+++.|+..|... |||.+++++|++.++|+++++.++.
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999999999999999999998765 9999999999999999999998764
No 45
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-35 Score=250.15 Aligned_cols=147 Identities=27% Similarity=0.420 Sum_probs=132.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHH--------hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYAS--------LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIA 78 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~--------~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iA 78 (249)
.+++||+||+++|.+.+||.+|+..+.. +.++..++.+..+-++|+++|+.+ ...+.++|||||||||+||
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA 159 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA 159 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence 3579999999999999999999987643 345555666777888999999975 6788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|||+++|+++|-|||+++|||.+.+.+++.|++++++ |.|+|++.|+++.++. ||||+-|++|+|+++|+++|+-.
T Consensus 160 RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 160 RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 9999999999999999999999999999999999765 9999999999999976 99999999999999999998654
No 46
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-34 Score=245.09 Aligned_cols=145 Identities=39% Similarity=0.660 Sum_probs=131.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+++||+||++.+++.+|++||+.+....++...++..+++.++++.+++++ .++++.+||||||||++||||++.+|+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~ 151 (220)
T cd03265 72 RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPE 151 (220)
T ss_pred hhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999998776666655556677889999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
++||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..++++++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 152 VLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999776 8999999999999976 999999999999998887654
No 47
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=8.3e-34 Score=258.86 Aligned_cols=148 Identities=26% Similarity=0.361 Sum_probs=134.3
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLY--RISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
++|+||||++ .+++.+|+.||+.+....+ +.+.++.++++.++++.+++. . .++++++|||||||||+|||||+
T Consensus 98 ~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~ 177 (331)
T PRK15079 98 SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI 177 (331)
T ss_pred CceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 5799999998 6888899999999876544 356677778889999999995 4 58899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 178 ~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 178 LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 253 (331)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 999999999999999999999999999999775 9999999999999976 9999999999999999999998754
No 48
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-34 Score=257.13 Aligned_cols=147 Identities=27% Similarity=0.445 Sum_probs=133.1
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.|||+||++ .++. .||+||+.|+...++.+.++..+++.++++.++|+ . .++++.+||||||||++|||||+.
T Consensus 104 ~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~ 182 (305)
T PRK13651 104 RRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAM 182 (305)
T ss_pred HhceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 45699999986 4454 69999999887766777778888899999999996 4 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|++|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||||++|++|++++.|+++++...
T Consensus 183 ~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998779999999999999865 999999999999999999998754
No 49
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-34 Score=246.68 Aligned_cols=148 Identities=32% Similarity=0.458 Sum_probs=131.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI----SSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.++|+||++.+++.+|+.||+.++...++. ...+..++++++++.+++.+ .++++.+||||||||++|||||+
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~ 152 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA 152 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 35799999999999889999999987554332 33444567788999999976 68889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
.+|++|||||||+|||+.+++.+.++|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 153 VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999999999765 8999999999999876 999999999999999999988654
No 50
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=253.13 Aligned_cols=146 Identities=30% Similarity=0.463 Sum_probs=131.9
Q ss_pred CCcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP--P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.|||+||++. +++ .||+||+.++...++.++++..+++.++++.++|+ . .++++++||||||||++|||||+
T Consensus 82 ~~~ig~v~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFE-ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhcccc-ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 457999999973 444 69999999877666777777788899999999996 4 68899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
.+|++|||||||+|||+.++..++++|++++++ |+|||++||+++++.. ||||++|++|++++.|+++++..
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999765 9999999999999965 99999999999999999998865
No 51
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.1e-33 Score=245.40 Aligned_cols=146 Identities=30% Similarity=0.437 Sum_probs=130.0
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC----------CHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRI----------SSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSI 77 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~i 77 (249)
..+||+||++.+|+.+|++||+.++...++. ...+..+++.++++.+++.. .++++++||||||||++|
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHH
Confidence 4599999999999999999999987654321 13445567888999999976 688899999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
||||+.+|+++||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 999999999999999999999999999999999987779999999999999976 99999999999999999888754
No 52
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-33 Score=248.77 Aligned_cols=147 Identities=28% Similarity=0.452 Sum_probs=132.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+|+.+|+.||+.+.....+....+..+++.++++.+++.+ .++++++||||||||++|||||+++|++
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999988999999998765555445555677888999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|||||||+|||+.++..+.+.|+++.++ |+|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999998755 8999999999999865 999999999999999999998764
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-33 Score=243.49 Aligned_cols=147 Identities=30% Similarity=0.448 Sum_probs=131.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+|+.||+.+....++.......+.+.++++.+++++ .++++++||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999998999999998765555555555667889999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999998765 8999999999999976 99999999999999998887754
No 54
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.7e-33 Score=242.45 Aligned_cols=157 Identities=29% Similarity=0.497 Sum_probs=136.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|+||++.+++.+|++||+.+....++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 479999999998888999999988766555555555667888999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcCCCcHHHHH
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~~~~l~~~~ 165 (249)
+||||||+|||+.++..+.+.|+++++ +|+|+|++||+++++..||++++|++|+++..++++++........+.+.|
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEAAF 232 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHH
Confidence 999999999999999999999999875 589999999999999669999999999999999999887653323344444
No 55
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-33 Score=241.71 Aligned_cols=140 Identities=36% Similarity=0.509 Sum_probs=125.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+++.+|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999988999999998765555555555677889999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+|||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998764 9999999999999876 9999999999998654
No 56
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-33 Score=242.63 Aligned_cols=135 Identities=26% Similarity=0.444 Sum_probs=122.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+++.+|+.||+.++...++...++..+++.++++.+++.+ .++++.+||||||||++|||||+++|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999998999999998766555555556677889999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~i 143 (249)
|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999987779999999999999976 999999999975
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.1e-33 Score=243.00 Aligned_cols=146 Identities=32% Similarity=0.547 Sum_probs=131.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+|+.+|++||+.++...++....+..++++++++.+++.+ .++++++||||||||++|||||+++|++
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999998765555445555667888999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|||||||+|||+.+++.+.+.|+++.++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999987779999999999999876 99999999999999999888754
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-33 Score=251.01 Aligned_cols=146 Identities=30% Similarity=0.479 Sum_probs=132.5
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.+|||||++ .+|. .||.||+.|+...++.+.++.++++.++++.+++. . .++++.+||||||||++|||||+.
T Consensus 83 ~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 83 RKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 35799999987 5666 59999999887766777777788899999999995 4 588999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||||++|++|+++..|++++++.
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999998779999999999999965 99999999999999999999865
No 59
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.6e-33 Score=242.99 Aligned_cols=148 Identities=30% Similarity=0.417 Sum_probs=131.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASL-YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++.+++.+|+.||+.++... .+...++..+++.++++.+++.. .++++++||||||||++|||||+++|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 35799999999999889999999875432 33444555677888999999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|||||||+|||+.++..+.+.|+++.++|.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999987779999999999999976 999999999999999999988654
No 60
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-33 Score=240.85 Aligned_cols=143 Identities=29% Similarity=0.413 Sum_probs=127.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+++.+|+.||+.+....++.+.++..+++.++++.+++.+ .++++++||||||||++|||||+++|+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 151 (220)
T cd03293 72 GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151 (220)
T ss_pred cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999998999999998766555555555677889999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEe--CCEEEEecChh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMR--KGVLLAEKSPE 150 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~--~G~iv~~g~~~ 150 (249)
++||||||+|||+.++..+++.|+++.+ .|+|||++||+++++.. ||++++|+ +|+++++++.+
T Consensus 152 lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999865 48999999999999865 99999999 79999887653
No 61
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-33 Score=250.18 Aligned_cols=147 Identities=29% Similarity=0.406 Sum_probs=133.1
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+++||+||++. ++...||.||+.|+....+.+.++..+++.++++.+++.+ .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 57999999983 6667899999998766556677777788899999999986 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+|||+.++..+++.|++++++ |+|||++||+++++..||+|++|++|+++..|+++++...
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999775 9999999999999966999999999999999999988654
No 62
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-33 Score=253.03 Aligned_cols=149 Identities=19% Similarity=0.280 Sum_probs=132.6
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.|||+||++ .+++.+|+.+++....... +...++.++++.++++.++|++ .++++++|||||||||+|||||
T Consensus 89 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL 168 (326)
T PRK11022 89 AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAI 168 (326)
T ss_pred CCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHH
Confidence 4699999998 5788899999987765543 4556677788999999999963 3788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||++++.. ||||++|++|+|++.|++++++.+..
T Consensus 169 ~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~ 246 (326)
T PRK11022 169 ACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246 (326)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCC
Confidence 9999999999999999999999999999999764 9999999999999965 99999999999999999999987543
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-33 Score=261.67 Aligned_cols=148 Identities=24% Similarity=0.374 Sum_probs=131.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.++|||++|++.+++.+|++||+.++...+ +....+.+++++++++.+++.+ .++++.+||||||||++|||||+
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 467999999999988899999999865322 1113445677899999999976 68999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|++|||||||+|||+.++.+++++|++++++|+|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 9999999999999999999999999999998779999999999999965 999999999999999999998754
No 64
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-33 Score=250.44 Aligned_cols=146 Identities=33% Similarity=0.539 Sum_probs=131.3
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
+.|||+||++ .+++ .||+||+.|+....+.+.++.++++.++++.++|+ . .++++.+||||||||++|||||+.+
T Consensus 85 ~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 163 (290)
T PRK13634 85 KKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAME 163 (290)
T ss_pred hhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 4699999997 4564 69999999886666667777777889999999996 4 5889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|++|||||||+|||+.++..++++|++++++ |.|||++||+++++.. ||||++|++|+++..|+++++.+.
T Consensus 164 P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999765 9999999999999965 999999999999999999988643
No 65
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=2.6e-33 Score=240.19 Aligned_cols=140 Identities=29% Similarity=0.609 Sum_probs=126.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+|++||+.+....++.+..+..+++.++++.+++.+ .++++++||||||||++|||||+.+|+
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred HhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999998999999998766666556666778889999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999987779999999999999976 9999999999997653
No 66
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.2e-33 Score=256.30 Aligned_cols=147 Identities=28% Similarity=0.424 Sum_probs=132.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+||+||+.|+.... ...+.+++++++++.+++.+ .++++++||||||||++|||||+.+|+
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 457999999999999999999999875432 23344567889999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|++++++ |+|+|++||+++++.. ||++++|++|+++..|+++++....
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999999776 8999999999999976 9999999999999999999987654
No 67
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.5e-33 Score=252.13 Aligned_cols=149 Identities=23% Similarity=0.293 Sum_probs=133.4
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.|+||||++ .+++.+|+.+++.+....+ +.+.++..+++.++++.+++++ .++++++|||||||||+|||||
T Consensus 97 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL 176 (330)
T PRK09473 97 EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL 176 (330)
T ss_pred CCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 4799999998 6888899999998766544 3556667788899999999964 2678999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.+|++||+||||+|||+.++..++++|++++++ |.|+|++|||++.+.. ||+|++|++|+|++.|+++++.....
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~ 254 (330)
T PRK09473 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPS 254 (330)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 9999999999999999999999999999999776 9999999999999975 99999999999999999999987644
No 68
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-33 Score=251.79 Aligned_cols=148 Identities=22% Similarity=0.295 Sum_probs=133.5
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.||||||++ .+++.+|+.+++......+ +....+.++++.++++.++|+ . .++++++||||||||++|||||+.
T Consensus 92 ~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~ 171 (327)
T PRK11308 92 QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALML 171 (327)
T ss_pred CCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHc
Confidence 4699999998 5888899999998765543 355666778899999999996 3 588999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||++.+.. ||+|++|++|+|++.|+++++.++.
T Consensus 172 ~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p 246 (327)
T PRK11308 172 DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246 (327)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 99999999999999999999999999999775 9999999999999976 9999999999999999999998754
No 69
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=247.29 Aligned_cols=144 Identities=26% Similarity=0.384 Sum_probs=128.2
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.|||+||++. .+...||+||+.|+....+.+..+.++++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 56999999973 3445799999998765555666666778899999999975 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
+|||||||+|||+.++..+++.|++++++|.|||++||+++++.. ||+|++|++|++++.|+++++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999997779999999999999965 999999999999999998654
No 70
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-33 Score=241.34 Aligned_cols=148 Identities=32% Similarity=0.579 Sum_probs=132.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC---CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP---DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+.++|+||++.+++.+|++||+.++....+...++..+++.++++.+++.. .++++++||||||||++|||||+++
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 3579999999999988999999998766555555555677889999999973 5788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999998765 8999999999999875 999999999999999998887643
No 71
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-33 Score=252.15 Aligned_cols=147 Identities=31% Similarity=0.428 Sum_probs=131.3
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.||||||++ .+|+. |++||+.|+....+.+.++..+++.++++.++++ . .++.+.+||||||||++|||||++
T Consensus 115 ~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~ 193 (320)
T PRK13631 115 RRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI 193 (320)
T ss_pred HhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 35699999998 46764 9999999876544566667777888999999996 4 688899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|++|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||+|++|++|+++..|++++++..
T Consensus 194 ~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 194 QPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999987779999999999999865 999999999999999999988653
No 72
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.6e-33 Score=240.59 Aligned_cols=148 Identities=34% Similarity=0.467 Sum_probs=131.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYAS-LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++.+++.+|+.||+.+... .++....+..+++.++++.++++. .++++.+||||||||++|||||+.+|
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 155 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence 3469999999999988999999987642 234445556677889999999975 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++||||||+|||+.++..+.+.|++++++|+|+|++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999987779999999999999976 999999999999999999887654
No 73
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.2e-32 Score=242.15 Aligned_cols=147 Identities=29% Similarity=0.432 Sum_probs=131.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCC-C-CCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS-LYRISSEEFRAKMKELQEVLDLPP-D-HRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
+.+||+||++.+++.+|++||+.++.. .++....+.++++.++++.+++.. . ++++.+||||||||++|||||+++|
T Consensus 92 ~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p 171 (257)
T PRK10619 92 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 171 (257)
T ss_pred hceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 579999999999998999999987542 334455566778889999999975 3 7889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++||||||+|||+.+++.+.+.|++++++|+|||++||+++++.. |||+++|++|+++..|+++++...
T Consensus 172 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence 9999999999999999999999999997779999999999999976 999999999999999999887653
No 74
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.7e-33 Score=263.34 Aligned_cols=153 Identities=29% Similarity=0.374 Sum_probs=137.6
Q ss_pred CCCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCC-C--CCCcCcCChHHHHHHHHHHH
Q psy4634 7 GSTYIGFMPQET--ALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPP-D--HRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 7 ~~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~--~~~~~~LSgGqkQRv~iArA 80 (249)
-++.|+|+||+| .|.|-+|+.+.+.-....++ .++++.++++.++++.++|++ . ++++++|||||||||.||+|
T Consensus 89 rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmA 168 (539)
T COG1123 89 RGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMA 168 (539)
T ss_pred ccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHH
Confidence 367899999997 45566899999987666654 568889999999999999986 3 35899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
|+.+|++||+||||++||+..+.++.++|+++.++ |.++|++|||++.+.. ||||++|++|++++.|++++++.+..+
T Consensus 169 La~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~h 248 (539)
T COG1123 169 LALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH 248 (539)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCC
Confidence 99999999999999999999999999999999865 9999999999999976 999999999999999999999987654
Q ss_pred C
Q psy4634 159 D 159 (249)
Q Consensus 159 ~ 159 (249)
.
T Consensus 249 p 249 (539)
T COG1123 249 P 249 (539)
T ss_pred c
Confidence 4
No 75
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=5.9e-33 Score=237.24 Aligned_cols=139 Identities=28% Similarity=0.442 Sum_probs=125.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|+||++.+++.+|++||+.++...++...++.++++.++++.+++.. .++++++||||||||++|||||+++|++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999988999999998765555555566677889999999976 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999998764 8999999999999976 9999999999998764
No 76
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-33 Score=247.21 Aligned_cols=145 Identities=29% Similarity=0.458 Sum_probs=130.2
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
+.|||+||++ .++ .+|+.||+.++...++...++..++++++++.+++. . .++++++||||||||++|||||+.+
T Consensus 85 ~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~ 163 (287)
T PRK13641 85 KKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYE 163 (287)
T ss_pred hceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 4699999997 355 479999999876555566666777889999999996 4 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|++|||||||+|||+.++..+.+.|++++++|.|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 164 p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 164 PEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999987779999999999999975 99999999999999999988764
No 77
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-33 Score=239.35 Aligned_cols=140 Identities=31% Similarity=0.429 Sum_probs=125.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+|+.+|++||+.+....++...++.++++.++++.+++++ .++++.+||||||||++||||++.+|++
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 166 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999998655445455556677889999999976 6788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhccCEEEEEeCCEEEEecC
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~ 148 (249)
|||||||+|||+.++..+.+.|+++++ +|+|||++||+++++..+|++++|++|++++.++
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999875 4899999999999998778999999999998765
No 78
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.5e-32 Score=240.20 Aligned_cols=146 Identities=26% Similarity=0.395 Sum_probs=129.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++ .|++||+.+....++ .+..+..+++.++++.+++. . .++++++||||||||++|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 357999999999998 899999998765544 24455567788899999996 4 5788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|+++||||||+|||+.++..++++|+++++ ++|+|++||+++++.. ||++++|++|+++..|+++++...
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999876 4899999999999976 999999999999999999988754
No 79
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=241.93 Aligned_cols=146 Identities=23% Similarity=0.372 Sum_probs=129.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||+||++.+|+ +|++||+.+....++.+.++..+++.++++.+++. . .++++.+||||||||++|||||++
T Consensus 93 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 93 KNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 56999999999888 79999999876655555555566788899999873 2 477889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|++|||||||+|||+.++..+++.|+++++ |+|||++||+++++.. ||++++|++|+++..|+++++..+.
T Consensus 172 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 172 KPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244 (258)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999999864 7999999999999965 9999999999999999999987643
No 80
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-33 Score=240.31 Aligned_cols=145 Identities=27% Similarity=0.437 Sum_probs=126.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL--------YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
+.++|+||++.+|+.+|+.||+.+.... .+....+..+++.++++.+++.. .++++.+||||||||++|||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHH
Confidence 4699999999999989999999875321 12222344567788999999975 68889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
||+++|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999999999999999998764 8999999999999975 9999999999999999988764
No 81
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=7.9e-33 Score=237.55 Aligned_cols=144 Identities=39% Similarity=0.689 Sum_probs=129.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+++.+|+.||+.+....++.+..+..+++.++++.+++++ .++++++||||||||++|||||+.+|+
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 153 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPS 153 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999988999999998776666555556677889999999975 678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
+|||||||+|||+.+++.+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++
T Consensus 154 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 154 VLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999865 5999999999999976 999999999999999988764
No 82
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.6e-33 Score=239.73 Aligned_cols=142 Identities=27% Similarity=0.389 Sum_probs=124.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCCC-CCCC--cCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISS-EEFRAKMKELQEVLDLPP-DHRT--CSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~-~~~~--~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.+||+||++.++ .+|++||+.+....++... .+.++++.++++.+++.+ .+++ +.+||||||||++|||||++
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 35699999999988 7899999998765544332 235677888999999975 4555 59999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~e 151 (249)
+|++|||||||+|||+.++..+++.|++++++ +|||++||+++++.. ||++++|++|+++..|++++
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999777 999999999999975 99999999999999888765
No 83
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-33 Score=246.85 Aligned_cols=147 Identities=28% Similarity=0.493 Sum_probs=131.3
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.|||+||++ .+|+ .|+.||+.++....+.+.++..+++.++++.+|+. . .++++.+||||||||++|||||+.
T Consensus 84 ~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~ 162 (286)
T PRK13646 84 RKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM 162 (286)
T ss_pred HhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 35799999987 4666 49999999876655666777778889999999996 5 578899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|++|||||||+|||+.++..+.++|++++++ |+|||++||+++++.. |||+++|++|++++.|+++++...
T Consensus 163 ~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999764 9999999999999865 999999999999999999887653
No 84
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-33 Score=254.48 Aligned_cols=144 Identities=27% Similarity=0.466 Sum_probs=130.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+|++||+.|+.. ....++++++++.+++.+ .++++++||||||||++|||||+.+|+
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999998643 122456788999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+|||||||+|||+.++..+++.|+++.++ |+|+|++||+++++.. ||++++|++|+++..|+++++..+..
T Consensus 149 llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 149 LLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999998776 8999999999999976 99999999999999999999987643
No 85
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6.8e-33 Score=238.08 Aligned_cols=143 Identities=27% Similarity=0.501 Sum_probs=125.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVL-DLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++.+++.+|++||+.+....++ ..+..+++.++++.+ +++. .++++++||||||||++|||||+++|+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999998765443 233445667778887 4665 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
+|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999987778999999999999876 9999999999999998887764
No 86
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.2e-32 Score=244.03 Aligned_cols=147 Identities=22% Similarity=0.350 Sum_probs=130.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++.+++.+|+.||+.++...+ ..+..+...++.++++.+++.+ .++++++||||||||++|||||+++|+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 163 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 46999999999999899999998865432 2344445567788899999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+|||+.+++.+.++|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998765 8999999999999976 999999999999999999998754
No 87
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-33 Score=229.02 Aligned_cols=145 Identities=29% Similarity=0.453 Sum_probs=135.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQF-YASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+++|+|||+..++|.+||.||+.- ..+..++++++...++.++++++.|.+ .|+.+-.|||||+|||+|||||+.+|
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence 4579999999999999999999754 456678999999999999999999986 79999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
++|++||||++|||+-..++.++|++++..|.|-+++||..+.++. |.+|+.|++|+|++.|+.+-.
T Consensus 161 qvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~f 228 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred cEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhc
Confidence 9999999999999999999999999999889999999999999987 999999999999999987643
No 88
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.6e-33 Score=237.72 Aligned_cols=135 Identities=32% Similarity=0.428 Sum_probs=121.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+|+.+|++||+.++...++....+..+++.++++.+++.+ .++++++||||||||++|||||+.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 569999999999998999999998766555544455667889999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhccCEEEEEeCCEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQANVVGLMRKGVL 143 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~~Dri~vl~~G~i 143 (249)
|||||||+|||+.++..+.+.|+++++ +|+|||++||+++++..||++++|++|++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999977 58999999999999877999999999974
No 89
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=245.19 Aligned_cols=146 Identities=29% Similarity=0.421 Sum_probs=131.4
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++. .+...|++||+.++...++.+..+..+++.++++.+++.. .++++++||||||||++|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 56999999985 3556799999998766555666666778889999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+++.|++++++|.|||++||+++++..||++++|++|+++..|+++++..
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999998877999999999999996699999999999999999988765
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-33 Score=235.74 Aligned_cols=139 Identities=36% Similarity=0.622 Sum_probs=124.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|+||++.+|+.+|+.||+.+....++.+..+..+++.++++.++++. .++++.+||||||||++|||||+.+|+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999998999999998766655555555677889999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
++||||||+|||+.+++.+.+.|+++++ +.|||++||+++++.. |||+++|++|++++.|
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999875 5999999999999975 9999999999998654
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.2e-32 Score=236.61 Aligned_cols=136 Identities=30% Similarity=0.429 Sum_probs=121.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|+||++.+++.+|++||+.+....+.....+..+++.++++.+++++ .++++++||||||||++|||||+.+|++
T Consensus 83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 162 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL 162 (221)
T ss_pred hcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 469999999999988999999998655444444455667888999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLL 144 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv 144 (249)
|||||||+|||+.++..+.+.|++++++ |+|||++||+++++..||++++|++|+++
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 163 VLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999998764 89999999999998779999999999985
No 92
>KOG0055|consensus
Probab=100.00 E-value=1.9e-33 Score=283.78 Aligned_cols=146 Identities=31% Similarity=0.521 Sum_probs=128.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCCC-CCCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE---VLDLPP-DHRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~-~~~~~----~~LSgGqkQRv~iAr 79 (249)
.++||.|.|||.||+. |++|||.|+.. ..+.+++.++++.+.. ..+||+ .|..+ .|||||||||+||||
T Consensus 1063 R~~i~lVsQEP~LF~~-TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNG-TIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred HHhcceeccCchhhcc-cHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHH
Confidence 5679999999999997 99999999822 3677777777655433 357776 34444 699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
|+++||+||||||.||+||.++++.++++|++ +.+|+|.|+++|+++++++||.|+|+++|+|+++|++++|.++.+
T Consensus 1140 AilRnPkILLLDEATSALDseSErvVQeALd~-a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G 1216 (1228)
T KOG0055|consen 1140 AILRNPKILLLDEATSALDSESERVVQEALDR-AMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRG 1216 (1228)
T ss_pred HHHcCCCeeeeeccchhhhhhhHHHHHHHHHH-hhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCC
Confidence 99999999999999999999999999999999 467999999999999999999999999999999999999998533
No 93
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-32 Score=234.67 Aligned_cols=140 Identities=29% Similarity=0.550 Sum_probs=126.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|+||++.+++.+|+.||+.+....++.+..+..+++.++++.++++. .++++.+||||||||++|||||+.+|+
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 148 (210)
T cd03269 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPE 148 (210)
T ss_pred HccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999998999999998766666555566678889999999975 678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
++||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|
T Consensus 149 ~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 149 LLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999987778999999999999976 9999999999997653
No 94
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-32 Score=248.24 Aligned_cols=148 Identities=20% Similarity=0.301 Sum_probs=128.3
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHhc---C---CCHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASLY---R---ISSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~ 76 (249)
+.||||||++. +++.+|+.+++.+....+ + ....+.++++.++++.++|.+ .++++++|||||||||+
T Consensus 89 ~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~ 168 (330)
T PRK15093 89 HNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVM 168 (330)
T ss_pred CCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 47999999985 677889999997643321 1 112345667889999999963 37889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|||||+.+|++|||||||+|||+.++.++.++|++++++ |.|+|+||||++++.. ||+|++|++|+|++.|+++++..
T Consensus 169 iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~ 248 (330)
T PRK15093 169 IAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248 (330)
T ss_pred HHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999875 9999999999999976 99999999999999999999986
Q ss_pred hc
Q psy4634 155 SY 156 (249)
Q Consensus 155 ~~ 156 (249)
+.
T Consensus 249 ~p 250 (330)
T PRK15093 249 TP 250 (330)
T ss_pred CC
Confidence 53
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-32 Score=244.72 Aligned_cols=146 Identities=29% Similarity=0.440 Sum_probs=130.6
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++. .+...|++||+.++...++.+.++..++++++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 56999999983 2234699999998766556666666778899999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+.++|++++++ |+|||++||+++++.. |||+++|++|++++.|+++++..
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999765 9999999999999975 99999999999999999998865
No 96
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.1e-32 Score=239.97 Aligned_cols=146 Identities=29% Similarity=0.428 Sum_probs=126.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASL--------YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIA 78 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iA 78 (249)
.+.+||+||++.+++.+|+.||+.++... .+....+.++++.++++.+++.. .++++.+||||||||++||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred HhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 35699999999999989999999864321 11122344567888999999975 6888999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 9999999999999999999999999999999998765 8999999999999965 9999999999999999988763
No 97
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-32 Score=244.35 Aligned_cols=147 Identities=31% Similarity=0.424 Sum_probs=132.4
Q ss_pred CCcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.|||+||++. ++...|+.||+.++...++.+.++.++++.++++.++|.+ .++++.+||||||||++|||||+.+|
T Consensus 80 ~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred hhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 357999999983 6666799999998766656666666778899999999976 68899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++|||||||+|||+.++..+++.|++++++ |+|||++||+++++..||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999876 899999999999987799999999999999999988765
No 98
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-32 Score=234.34 Aligned_cols=138 Identities=32% Similarity=0.425 Sum_probs=122.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+++.+|+.||+.+....+ .....++++.++++.++++. .++++.+||||||||++|||||+.+|+
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 357999999999998899999998765432 23344567888999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
++||||||+|||+.+++.+.+.|++++++ |+|||++||+++++.. ||++++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999776 8999999999999975 9999999999998764
No 99
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.4e-32 Score=234.82 Aligned_cols=135 Identities=27% Similarity=0.440 Sum_probs=122.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|+||++.+|+.+|+.||+.++...++.+.++..+++.++++.+++++ .++++.+||||||||++|||||+++|++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999998999999998766555555556677889999999976 6788999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~i 143 (249)
+||||||+|||+.+++.+.+.|++++++|+|+|++||+++++.. ||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999987679999999999999976 999999999974
No 100
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.5e-32 Score=234.93 Aligned_cols=147 Identities=27% Similarity=0.334 Sum_probs=129.1
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC---C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP---P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||++|++. +++.+|+.+|+.+....++....+..+++.++++.++++ . .++++.+||||||||++|||||+
T Consensus 62 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~ 141 (230)
T TIGR02770 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALL 141 (230)
T ss_pred heeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 57999999985 556789999998765544433344566788999999997 3 57889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998765 8999999999999975 999999999999999999998764
No 101
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.4e-32 Score=234.98 Aligned_cols=135 Identities=27% Similarity=0.415 Sum_probs=121.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+|+.||+.+....++......++++.++++.+++.+ .++++.+||||||||++|||||+.+|+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred HhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999988999999998765555555555677889999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~ 142 (249)
+|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999987779999999999999976 99999999985
No 102
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.4e-32 Score=235.13 Aligned_cols=138 Identities=22% Similarity=0.345 Sum_probs=124.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|+||++.+++.+|+.||+.+....++.+.++..+++.++++.+++.. .++++++||||||||++|||||+++|+
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred HhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999998888999999998766555555566667888999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLA 145 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~ 145 (249)
+|||||||+|||+.+++.+.+.|++++++|.|+|++||+++++.. ||++++|++|+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999987778999999999999976 99999999999864
No 103
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-32 Score=243.94 Aligned_cols=146 Identities=29% Similarity=0.387 Sum_probs=132.0
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++. +++..|++||+.|....++.+.++..+++.++++.+++.. .++++++||||||||++|||||+++|+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 57999999984 5667899999998765556666677788899999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+.+.|++++++ |+|||++||+++++..||++++|++|++++.|+++++..
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999998765 999999999999996699999999999999999988765
No 104
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-32 Score=237.84 Aligned_cols=148 Identities=25% Similarity=0.375 Sum_probs=128.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCC----CC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDL----PP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l----~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+ +|++||+.++...++. ...+.++++.++++.+++ .+ .++++++||||||||++|||||
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 356999999998885 7999999987654432 334456678888898887 23 5778999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.+|++|||||||+|||+.++..+++.|++++ ++.|+|++||+++++.. |||+++|++|+++..|+++++..+..
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 241 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPK 241 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999985 47999999999999976 99999999999999999999876543
No 105
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-32 Score=237.61 Aligned_cols=146 Identities=27% Similarity=0.509 Sum_probs=130.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++.+++.+|+.||+.+..... ....++.+.++.++++.+++.. .++++++||||||||++|||||+.+|+
T Consensus 78 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred hCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 56999999999999899999998765433 2334455677889999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+.+.+++++++|+|+|++||+++++.. ||++++|++|+++..|+++++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999987779999999999999866 99999999999999999988764
No 106
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-32 Score=236.27 Aligned_cols=147 Identities=24% Similarity=0.353 Sum_probs=129.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI--SSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArA 80 (249)
.+.|||+||++.+++.+|+.||+.++...++. +..+..+++.++++.+++.. .++++.+||||||||++||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 35799999999888889999999987554332 34455677888999999842 478889999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+.+|+++||||||+|||+.++..+.+.|+++.+ |+|+|++||+++++.. ||++++|++|+++..|+++++...
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 9999999999999999999999999999999854 8999999999999965 999999999999999999988754
No 107
>KOG0058|consensus
Probab=100.00 E-value=6.5e-33 Score=267.27 Aligned_cols=156 Identities=29% Similarity=0.495 Sum_probs=132.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HcCCCCC-CCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE---VLDLPPD-HRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~-~~~~----~~LSgGqkQRv~iAr 79 (249)
.++||+|.|||.||.. ||+|||.|+.. ..+.++++..++.+.. ..++++. +..+ .+||||||||+||||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 4679999999999997 99999999877 6677777766665443 3466653 3333 699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcCCC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVD 159 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~~~ 159 (249)
||++||.||||||.||+||.+++..+++.|.++.+ ++|||++.|++++++.||+|+++++|++++.|+++|++++.+
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~-- 694 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPN-- 694 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcc--
Confidence 99999999999999999999999999999999654 699999999999999999999999999999999999998742
Q ss_pred cHHHHHHHHHhhh
Q psy4634 160 SLEEVFLRLCHQQ 172 (249)
Q Consensus 160 ~l~~~~~~~~~~~ 172 (249)
..|..+...+
T Consensus 695 ---gly~~Lv~~q 704 (716)
T KOG0058|consen 695 ---GLYAKLVQRQ 704 (716)
T ss_pred ---cHHHHHHHHh
Confidence 3555555444
No 108
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-32 Score=236.30 Aligned_cols=146 Identities=24% Similarity=0.385 Sum_probs=127.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||+||++.+|+. |+.||+.++...++. ..++..++++++++.+++.. .++++.+||||||||++|||||+
T Consensus 87 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 87 RRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred hcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 469999999998884 999999987654443 33445667888899999842 37788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 239 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 9999999999999999999999999999985 47999999999999965 9999999999999999999887643
No 109
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-32 Score=241.47 Aligned_cols=146 Identities=27% Similarity=0.440 Sum_probs=130.2
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++. .+...|+.||+.++...++.+.++..+++.++++.+++.+ .++++++||||||||++|||||+.+|+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 56999999974 2335799999998765555666666778899999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++.+
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999776 8999999999999965 99999999999999999998865
No 110
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-32 Score=233.32 Aligned_cols=139 Identities=25% Similarity=0.366 Sum_probs=121.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+|+.+|++||+.+.........++.++++.++++.+++.+ .++++.+||||||||++|||||+.+|++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999987543211112334567888999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999998764 8999999999999976 9999999999997653
No 111
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.8e-32 Score=236.02 Aligned_cols=145 Identities=26% Similarity=0.396 Sum_probs=127.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY--------RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
+.+||+||++.+++.+|+.||+.++.... +...++.++++.++++.+++.+ .++++++||||||||++|||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 46999999999999999999998864311 1223345667889999999976 68889999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
||+++|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999999865 7999999999999976 99999999999999999888754
No 112
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-32 Score=236.02 Aligned_cols=145 Identities=29% Similarity=0.455 Sum_probs=129.0
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFY-ASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.++|+||++.+|+.+|+.||+.+. ...++.+..+..+++.++++.++++. .++.+.+||||||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4699999999999999999999753 33344555555677888999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
++||||||+|||+.++..+.+.|++++++|+|+|++||+++++.. ||++++|++|+++..|+++++.
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999987679999999999999975 9999999999999999887764
No 113
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.2e-32 Score=233.06 Aligned_cols=135 Identities=30% Similarity=0.547 Sum_probs=121.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|+||++.+++.+|+.||+.++...++.. .++++++++.+++.+ .++++++||||||||++||||++.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 56999999999998899999999876544432 356778899999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+||||||+|||+.+++.+.+.|++++++|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999987779999999999999976 9999999999998654
No 114
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-32 Score=240.35 Aligned_cols=147 Identities=26% Similarity=0.405 Sum_probs=129.2
Q ss_pred CcEEEEeCCCCC-CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETAL-FDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l-~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.|||+||++.. +...|+.+|+.++...++...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 469999999853 334589999988765555555566677888999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+|||+.++..+.++|++++++|+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999987779999999999999965 999999999999999999887653
No 115
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5.5e-32 Score=233.67 Aligned_cols=138 Identities=28% Similarity=0.337 Sum_probs=123.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+++.+|+.||+.+....++.+..+.++++.++++.+++.+ .++++.+||||||||++|||||+.+|++
T Consensus 88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l 167 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV 167 (228)
T ss_pred heEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999998999999988655444455556778889999999975 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEe
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAE 146 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~ 146 (249)
|||||||+|||+.++..+.+.|++++++ |.|||++||+++++..||++++|++|++++.
T Consensus 168 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 168 LFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999998765 8999999999999866999999999999753
No 116
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-32 Score=235.33 Aligned_cols=147 Identities=24% Similarity=0.371 Sum_probs=128.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+++.+|+.||+.+.........+...+++.++++.++++. .++++++||||||||++||||++.+|++
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 150 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI 150 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999998999999987532111112334567888999999975 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+||||||+|||+.+++.+.+.|+++.++ |+|+|++||+++++.. ||++++|++|+++..|+++++...
T Consensus 151 llLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999998664 8999999999999976 999999999999999999888754
No 117
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-32 Score=240.42 Aligned_cols=146 Identities=29% Similarity=0.493 Sum_probs=129.3
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.|||+||++ .+++ .|++||+.++...++.+.++..++++++++.+++. . .++++.+||||||||++|||||+.
T Consensus 84 ~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (280)
T PRK13649 84 RKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM 162 (280)
T ss_pred HhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 35699999997 4565 59999999876555555556667788899999996 3 588899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.+++.+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 163 EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999987779999999999999975 99999999999999999988765
No 118
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-32 Score=237.29 Aligned_cols=147 Identities=24% Similarity=0.401 Sum_probs=129.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++ .|++||+.++...+ +.+.++..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 357999999999887 79999999876543 345555567788999999973 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+.+|++|||||||+|||+.++..+.+.|++++ ++.|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 246 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKP 246 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999985 47899999999999975 9999999999999999999987643
No 119
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.7e-32 Score=235.72 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=126.0
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASL--YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
..+|+||++.+++.+|+.||+.++... .+..+.+..+++.++++.+++.. .++++++||||||||++|||||+++|+
T Consensus 55 ~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 134 (230)
T TIGR01184 55 DRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPK 134 (230)
T ss_pred hheEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 358999999999989999999886431 23444555667889999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
+|||||||+|||+.+++.+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|+..++
T Consensus 135 lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 135 VLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999999999999998765 8999999999999876 999999999999988876555
No 120
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-32 Score=241.40 Aligned_cols=147 Identities=30% Similarity=0.439 Sum_probs=131.5
Q ss_pred CCcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+.+||+||++. ++ ..|+.+|+.|+....+.+..+..++++++++.+++.. .++++++||||||||++|||||+.+
T Consensus 84 ~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 84 RNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred hhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 457999999984 44 3599999998766556666666778899999999976 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+++||||||+|||+.++..+++.|++++++ |.|||++||+++++..||++++|++|+++..|+++++..+
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999764 9999999999999867999999999999999999998653
No 121
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.8e-32 Score=235.68 Aligned_cols=149 Identities=28% Similarity=0.421 Sum_probs=131.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYAS-LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.++|+||++.+++..|+.||+.++.. ..+....+..+++.++++.+++.. .++.+.+||||||||++|||||+++|
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 165 (252)
T TIGR03005 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRP 165 (252)
T ss_pred hhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCC
Confidence 3579999999999998999999987533 234445555677888999999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+++||||||+|||+.++..+.+.|+++.++ |+|+|++||+++++.. ||++++|++|++++.|+++++....
T Consensus 166 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T TIGR03005 166 KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238 (252)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999998765 9999999999999965 9999999999999999999887543
No 122
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-32 Score=239.51 Aligned_cols=146 Identities=34% Similarity=0.517 Sum_probs=129.4
Q ss_pred CCcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+.|||+||++. +++ .|+.||+.++...++...++.++++.++++.+++.. .++++++||||||||++|||||+.+
T Consensus 77 ~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred HhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 356999999973 454 699999987654445555566677889999999975 6888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|+++||||||+|||+.++..+.+.|++++++|.|||++||+++++.. ||++++|++|++++.|+++++..
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999997679999999999999975 99999999999999999998865
No 123
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-32 Score=240.40 Aligned_cols=148 Identities=28% Similarity=0.405 Sum_probs=131.6
Q ss_pred CCcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++. .+...|+.||+.++....+.+.++..++++++++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356999999984 5666799999998765445556666678889999999975 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|||||||+|||+.++..+.+.|++++++ |.|||++||+++++..||++++|++|++++.|+++++...
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999776 9999999999999977999999999999999999988653
No 124
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=234.50 Aligned_cols=147 Identities=25% Similarity=0.372 Sum_probs=127.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+ .|++||+.++...++.. .....+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 356999999999887 79999999876544433 333456778888988873 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999865 6899999999999865 9999999999999999999987653
No 125
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-32 Score=236.42 Aligned_cols=146 Identities=23% Similarity=0.352 Sum_probs=126.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh----------cCC-----CHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL----------YRI-----SSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQV 72 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqk 72 (249)
..++|+||++.+++.+|+.||+.++... ++. ...+..+++.++++.+++.. .++++++||||||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence 3589999999999999999999986421 110 11223456778899999975 6889999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChh
Q psy4634 73 RRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPE 150 (249)
Q Consensus 73 QRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~ 150 (249)
||++|||||+++|++|||||||+|||+.++..+++.|.+++++ |+|||++||+++++.. ||++++|++|+++..|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 9999999999999999999999999999999999999998776 8999999999999976 9999999999999999988
Q ss_pred HHHH
Q psy4634 151 ELIA 154 (249)
Q Consensus 151 el~~ 154 (249)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8754
No 126
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-31 Score=231.79 Aligned_cols=148 Identities=31% Similarity=0.467 Sum_probs=132.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||++|++.+|+.+|+.||+.+....++.......+++.++++.+++.. .++.+.+||+|||||++|||||+.+|+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999988999999998766555555555677888999999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++||||||+|||+.+++.+++.|++++++ |.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999998765 8999999999999976 999999999999999998887654
No 127
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-31 Score=233.95 Aligned_cols=147 Identities=22% Similarity=0.357 Sum_probs=127.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++ .|+.||+.++...++.. .+...+++.++++.+++.. .++++.+||||||||++|||||
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 346999999999887 59999998876554432 3345567788899998842 4678899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++++.. ||++++|++|++++.|+++++.++.
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~ 236 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNP 236 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 99999999999999999999999999999985 57999999999999965 9999999999999999999987643
No 128
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.6e-32 Score=237.31 Aligned_cols=146 Identities=28% Similarity=0.415 Sum_probs=128.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh-----
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL----- 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~----- 82 (249)
+.+||+||++.+++.+|++||+.+.....+...++..+++.++++.+++.+ .++.+.+||||||||++|||||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 569999999988778899999988654333333344566788999999975 68899999999999999999999
Q ss_pred -cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 83 -HTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 83 -~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
.+|++|||||||+|||+.++..+.++|++++ ++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999987 569999999999999975 99999999999999999888764
No 129
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-31 Score=232.87 Aligned_cols=148 Identities=32% Similarity=0.494 Sum_probs=132.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+|+.||+.+....++.+..+..+.+.++++.+++.. .++++.+||||||||++||||++++|+
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999988999999998765555555566677888999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++|||||+|||+.+++.+++.|+++.++ |+|+|++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999998765 9999999999999976 999999999999999998887654
No 130
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-32 Score=235.56 Aligned_cols=144 Identities=22% Similarity=0.470 Sum_probs=125.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVL-DLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++.+|+.+|+.||+.+..... ...+..+++.++++.+ ++.+ .++++++||||||||++|||||+.+|+
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 46999999999999899999998764322 2233445667777877 4654 577889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999987779999999999999865 99999999999999999998864
No 131
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.3e-32 Score=256.72 Aligned_cols=149 Identities=31% Similarity=0.416 Sum_probs=136.0
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+++-++||+| +|.|.+||.+++......++. ...+.++++.++++.++|+. .++++++||||||||++|||||+.
T Consensus 367 ~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~ 446 (539)
T COG1123 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALAL 446 (539)
T ss_pred hheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhc
Confidence 5677889987 789999999999988876653 35667778999999999975 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+|++|++|||||+||+..+..+.++|++++++ |.|.+++|||++.++. ||||++|++|+|++.|+.++++....
T Consensus 447 ~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~ 522 (539)
T COG1123 447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQ 522 (539)
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCC
Confidence 99999999999999999999999999999887 9999999999999987 99999999999999999999987654
No 132
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=233.89 Aligned_cols=149 Identities=22% Similarity=0.326 Sum_probs=129.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++.+|+.||+.++...++ ....+..+++.++++.+++.. .++.+.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 4569999999999998999999987655433 234445567888899999742 3677899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++++.. ||++++|++|+++..|+++++.....
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999999999999999999865 6899999999999965 99999999999999999999876543
No 133
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.2e-32 Score=230.32 Aligned_cols=141 Identities=24% Similarity=0.390 Sum_probs=122.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+|+.+|+.||+.+..........+.++++.++++.+++.+ .++.+.+||||||||++|||||+.+|+
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999998999999987543211112233566788999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
++||||||+|||+.++..+.++|+++.++ |.|||++||+++++.. ||++++|++|++++.|+
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999998765 8999999999999875 99999999999998774
No 134
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-33 Score=243.14 Aligned_cols=143 Identities=29% Similarity=0.452 Sum_probs=131.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+++||||||+..||+++||+.|+.|+.+.. .....+++.+.+|+.+ .+|++.+|||||||||+|+|||+..|+
T Consensus 75 ~RriGYVFQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~ 148 (352)
T COG4148 75 KRRIGYVFQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hheeeeEeeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCC
Confidence 578999999999999999999999986632 2445677889999987 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+||||||.|+||..-+++++..|.++.++ ..-|++|||.++|+.. ||+|++|++|++.+.|..+++....
T Consensus 149 LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 149 LLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred eeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999999999999999999887 8999999999999966 9999999999999999999998754
No 135
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.2e-32 Score=230.57 Aligned_cols=134 Identities=33% Similarity=0.477 Sum_probs=118.3
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.++|+||++. .++.+|+.||+.+....++....+..+++.++++.++++. .++++++||||||||++|||||+++|+
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 154 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 56999999985 3556899999988665444444555667888999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~ 142 (249)
+|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+
T Consensus 155 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 155 ILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999987779999999999999986 99999999985
No 136
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.5e-31 Score=234.49 Aligned_cols=146 Identities=24% Similarity=0.332 Sum_probs=128.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRI--SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.+||+||++.+|+.+|+.||+.++...++. +.++..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 5699999999999989999999987554332 3445556788889998873 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999865 6999999999999876 999999999999999999988754
No 137
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=6.9e-32 Score=264.54 Aligned_cols=147 Identities=27% Similarity=0.352 Sum_probs=132.7
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.||||+|++ .+++.+||.||+.++.+.. +.+..+.++++.++++.+|++. .++++++|||||||||+|||||
T Consensus 104 ~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL 183 (623)
T PRK10261 104 ADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMAL 183 (623)
T ss_pred CCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHH
Confidence 4699999998 6788899999999887653 5566677788999999999953 4788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|++|||||||++||+.++.+++++|++++++ |+|||+||||++++.. ||||++|++|++++.|+++++...
T Consensus 184 ~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 184 SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhcC
Confidence 9999999999999999999999999999999765 9999999999999976 999999999999999999988653
No 138
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.98 E-value=7.3e-32 Score=230.29 Aligned_cols=136 Identities=31% Similarity=0.456 Sum_probs=121.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYAS-LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.++|+||++.+++.+|+.||+.++.. .++...++..+++.++++.++++. .++++.+||||||||++|||||+++|
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 154 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNP 154 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCC
Confidence 3579999999999988999999988643 234445555677888999999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEE
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~i 143 (249)
++|||||||+|||+.+++.+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 155 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 155 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999997778999999999999976 999999999974
No 139
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2e-31 Score=233.54 Aligned_cols=147 Identities=23% Similarity=0.357 Sum_probs=128.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+ +|++||+.+....++. ...+..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 356999999999887 7999999987655543 3345556778889999873 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+++|+++||||||+|||+.++..+.+.|+++.+ ++|+|++||+++++.. ||++++|++|+++..|+++++....
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEP 237 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999866 6899999999999976 9999999999999999999987653
No 140
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.3e-31 Score=262.53 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=132.9
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.++||||||++ .+++.+||.||+.+....++. ..++..+++.++++.++++ . .++++++|||||||||+|||||+
T Consensus 400 ~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~ 479 (623)
T PRK10261 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA 479 (623)
T ss_pred cCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 35799999997 588889999999986654443 3445567888999999995 4 68899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++.. ||||++|++|++++.|++++++.+.
T Consensus 480 ~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p 555 (623)
T PRK10261 480 LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENP 555 (623)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999776 9999999999999976 9999999999999999999997643
No 141
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=6.5e-32 Score=229.82 Aligned_cols=133 Identities=27% Similarity=0.371 Sum_probs=115.8
Q ss_pred CCcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++. .+..+|++||+.++...++. ..+++.++++.+++.+ .++++++||||||||++|||||+.+|
T Consensus 70 ~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 70 RKSIGYVMQDVDYQLFTDSVREELLLGLKELDA----GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred hcceEEEecChhhhhhhccHHHHHhhhhhhcCc----cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 357999999974 23356999999886543321 1356788899999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEE
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLL 144 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv 144 (249)
+++||||||+|||+.+++.+.+.|++++++|+|+|++||+++++.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999987779999999999999976 9999999999974
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1e-31 Score=238.37 Aligned_cols=147 Identities=27% Similarity=0.393 Sum_probs=129.9
Q ss_pred CCcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++. .++.+|++||+.++....+.+.++.++++.++++.+++.+ .++.+.+||||||||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356999999984 5667899999998765444555556677889999999975 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++|||||||+|||+.+++.++++|++++++ |+|||++||+++++..||++++|++|+++..|+++++..
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999998766 599999999999986799999999999999999888764
No 143
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1e-31 Score=236.09 Aligned_cols=146 Identities=25% Similarity=0.407 Sum_probs=127.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS----LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||+||++.+++.+|++||+.++.. .++...++..+++.++++.+++.+ .++++++||||||||++||||++.
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 469999999998888999999987531 122222344567788999999975 688899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++++.. ||++++|++|+++..|+++++..
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999987779999999999999976 99999999999999999888754
No 144
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.6e-31 Score=235.42 Aligned_cols=141 Identities=26% Similarity=0.332 Sum_probs=125.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
..+||+||++.+++.+|+.||+.++...++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+++|++
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 468999999999998999999998765555555556677889999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEe--CCEEEEecCh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMR--KGVLLAEKSP 149 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~--~G~iv~~g~~ 149 (249)
|||||||+|||+.++..+.+.|+++.+ +|+|||++||+++++.. ||++++|+ +|+++.+++.
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999854 58999999999999976 99999998 5999988754
No 145
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.98 E-value=1.7e-31 Score=236.15 Aligned_cols=146 Identities=25% Similarity=0.403 Sum_probs=128.6
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.|||+||++ .+++.+|+.||+.+..... +....+..+++.++++.+++. . .++++.+||||||||++|||||++
T Consensus 88 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~ 167 (265)
T TIGR02769 88 RDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAV 167 (265)
T ss_pred hceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 4699999997 4667789999998765432 344445566788999999995 4 588899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 168 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 168 KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999998765 8999999999999975 99999999999999999999875
No 146
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.5e-31 Score=232.44 Aligned_cols=146 Identities=26% Similarity=0.415 Sum_probs=127.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI--SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArA 80 (249)
.+.+||+||++.+|+ .|++||+.++...++. .....++++.++++.+++. . .++++.+||||||||++||||
T Consensus 78 ~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 78 RKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred hhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 356999999999997 5999999987554442 2234456678899999994 2 467889999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+++|+++||||||+|||+.++..+.+.|+++.+ |+|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999864 8999999999999975 999999999999999999998754
No 147
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.7e-31 Score=238.95 Aligned_cols=146 Identities=32% Similarity=0.447 Sum_probs=127.3
Q ss_pred CCcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.|||+||++. +++ .|++||+.+.....+...++..+++.++++.++++ . .++++++||||||||++|||||+.
T Consensus 89 ~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~ 167 (289)
T PRK13645 89 RKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM 167 (289)
T ss_pred hccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 346999999973 454 59999999875544445555566788899999995 4 688899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 168 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998764 8999999999999865 99999999999999999888754
No 148
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.1e-31 Score=233.49 Aligned_cols=145 Identities=23% Similarity=0.393 Sum_probs=127.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||+||++.+|+. |++||+.+....++. ..++..++++++++.+++. + .++++.+||||||||++|||||+
T Consensus 93 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 93 KNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 469999999999886 999999987655443 3345566778889988884 2 46788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|+++||||||+|||+.++..+++.|+++.+ ++|+|++||+++++.. ||++++|++|+++..|+++++..+
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 99999999999999999999999999999864 7999999999999976 999999999999999999998764
No 149
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.3e-31 Score=233.25 Aligned_cols=147 Identities=22% Similarity=0.359 Sum_probs=128.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||++|++.+++.+|+.||+.+....++. +.++.++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 35699999999999989999999987654442 3445566788889999883 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEe------CCEEEEecChhHHHH
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMR------KGVLLAEKSPEELIA 154 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~------~G~iv~~g~~~el~~ 154 (249)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|+ +|++++.|+++++..
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence 999999999999999999999999999999854 6899999999999975 99999997 899999999998875
Q ss_pred h
Q psy4634 155 S 155 (249)
Q Consensus 155 ~ 155 (249)
.
T Consensus 243 ~ 243 (258)
T PRK14241 243 N 243 (258)
T ss_pred C
Confidence 4
No 150
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=1.7e-31 Score=256.52 Aligned_cols=147 Identities=26% Similarity=0.374 Sum_probs=132.1
Q ss_pred CcEEEEeCC-CCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQE-TALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~-~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||+ +.+++.+|++||+.+....++.+.++.++++.++++.+++++ .++++++|||||||||+|||||+++|+
T Consensus 109 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~ 188 (520)
T TIGR03269 109 KRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188 (520)
T ss_pred hcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 459999997 678888999999998766556666666778899999999976 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+|||+.++..+.+.|++++++ |+|||+||||++.+.. ||++++|++|+++..|+++++...
T Consensus 189 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 99999999999999999999999998654 9999999999999976 999999999999999998887653
No 151
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.6e-31 Score=231.68 Aligned_cols=147 Identities=22% Similarity=0.354 Sum_probs=127.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++ .|+.||+.++...++. +.++.++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 346999999999888 7999999987655443 3344566788888888873 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+++|++|||||||+|||+.++..+.+.|++++ +|+|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 236 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNP 236 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999985 47999999999999976 9999999999999999999887543
No 152
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.98 E-value=1.6e-31 Score=235.76 Aligned_cols=144 Identities=25% Similarity=0.411 Sum_probs=126.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL--------YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
+++||+||++.+|+.+|+.||+.++... .+...++.++++.++++.+++.+ .++.+.+||||||||++|||
T Consensus 86 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 165 (262)
T PRK09984 86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIAR 165 (262)
T ss_pred hheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHH
Confidence 4699999999999989999999875421 01112344567888999999975 68899999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++
T Consensus 166 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 166 ALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999998764 8999999999999865 999999999999999999886
No 153
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.98 E-value=3.4e-31 Score=230.48 Aligned_cols=145 Identities=21% Similarity=0.226 Sum_probs=125.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYR-------ISSEEFRAKMKELQEVLDLP-P-DHRTCS-TLSGGQVRRVSIA 78 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQRv~iA 78 (249)
..++|+||++.+++.+|+.||+.+...... .+..+..+++.++++.++++ . .++++. +||||||||++||
T Consensus 77 ~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la 156 (243)
T TIGR01978 77 AGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEIL 156 (243)
T ss_pred cceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHH
Confidence 348999999999999999999987644321 12234456788899999996 3 577776 5999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--cCEEEEEeCCEEEEecChhHHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ--ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~--~Dri~vl~~G~iv~~g~~~el~ 153 (249)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 157 QMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999997779999999999999964 7999999999999999887543
No 154
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.4e-31 Score=235.68 Aligned_cols=148 Identities=30% Similarity=0.392 Sum_probs=131.0
Q ss_pred CCcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++. +++..|+.+|+.+.....+.+.++..+++.++++.+++.+ .++++.+||||||||++||||++.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356999999985 6777899999988765555555566677888999999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++||||||+|||+.++..+++.|++++++ |+|||++||+++++..||++++|++|+++..|+++++...
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999998765 8999999999999867999999999999999999887653
No 155
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.7e-32 Score=225.58 Aligned_cols=143 Identities=26% Similarity=0.368 Sum_probs=132.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
...-|+|||++.|+|++|+.||++|+.++.++++.++++++.+.+..+||.. .++++-+||||||||+.|||||+.+|+
T Consensus 73 gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 73 GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred CccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 4457899999999999999999999999999999999999999999999986 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEe--CCEEEEecChh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMR--KGVLLAEKSPE 150 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~--~G~iv~~g~~~ 150 (249)
+|+||||+++||.-+|+.++++|.++.++ |+.++++||+++|+.. ++|+++|+ .|+|+..-+++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999999999999998654 9999999999999976 99999998 56998876665
No 156
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.98 E-value=3.6e-31 Score=230.40 Aligned_cols=148 Identities=30% Similarity=0.471 Sum_probs=132.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|+||++.+|+.+|+.||+.+....++.......+.+.++++.+++.. .++.+.+||+||+||++|||||+++|+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999998999999998766555544455567788999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++||||||+|||+.++..+++.|.+++++ |+|+|++||+++++.. ||++++|++|+++..|+++++...
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999998776 8999999999999876 999999999999999999888653
No 157
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.98 E-value=2.2e-31 Score=256.29 Aligned_cols=147 Identities=24% Similarity=0.372 Sum_probs=130.5
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLYR--ISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+++||+||++ .+++.+||.||+.++...++ .+..+.++++.++++.+++. . .++++++|||||||||+|||||+
T Consensus 362 ~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 441 (529)
T PRK15134 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI 441 (529)
T ss_pred hceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh
Confidence 4699999997 47888999999998754332 34445567788999999996 4 68899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|++++.|+++++.+.
T Consensus 442 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 442 LKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred CCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999999775 8999999999999976 999999999999999999998754
No 158
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.98 E-value=3.6e-31 Score=234.42 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=129.3
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||+||++. +++.+|+.+++.+....+ +....+..+++.++++.+++. . .++++++||||||||++|||||++
T Consensus 87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (267)
T PRK15112 87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL 166 (267)
T ss_pred ccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh
Confidence 46999999985 567789999998765543 344455566788999999994 4 577889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 167 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 240 (267)
T PRK15112 167 RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240 (267)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcC
Confidence 99999999999999999999999999999765 8999999999999976 999999999999999999988764
No 159
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.98 E-value=4e-31 Score=227.70 Aligned_cols=139 Identities=28% Similarity=0.547 Sum_probs=124.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|+||++.+++.+|++||+.++...++.. .+++.++++.+++.+ .++++.+||||||||++||||++.+|++
T Consensus 70 ~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred ccEEEEcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 57999999999998899999998876554433 245678889999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhH
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~e 151 (249)
+||||||+|||+.+++.+++.|++++++|.|||++||+++++.. ||++++|++|+++..|++++
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999987779999999999999965 99999999999999988754
No 160
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.4e-31 Score=233.32 Aligned_cols=146 Identities=23% Similarity=0.385 Sum_probs=127.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI--SSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArA 80 (249)
.+.+||+||++.+|+. |+.||+.++...++. +..+..+++.++++.+++.. .++++.+||||||||++||||
T Consensus 99 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 99 RARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred hhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 3569999999998885 999999987654432 33444567788999999852 367789999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 178 IAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999865 7899999999999976 999999999999999999988754
No 161
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.2e-31 Score=231.01 Aligned_cols=149 Identities=30% Similarity=0.408 Sum_probs=134.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY------------RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRR 74 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~------------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQR 74 (249)
...|+--||.+.+|++|||.||+..+...+ ....++..+++.++|+++||.+ ++++.++||+|||+|
T Consensus 78 r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred hccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHH
Confidence 445777899999999999999998764421 1134677888999999999987 799999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
+.|||||+.+|++||||||++||.|....++.+.|++++++ |.||+++.|||+.+.. ||||+||+.|+++++|+|+++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 99999999999999999999999999999999999999875 7999999999999976 999999999999999999999
Q ss_pred HHhc
Q psy4634 153 IASY 156 (249)
Q Consensus 153 ~~~~ 156 (249)
.++.
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 8764
No 162
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.98 E-value=2e-31 Score=230.40 Aligned_cols=141 Identities=29% Similarity=0.489 Sum_probs=123.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD-LPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++.+|+.+|+.||+.++...++... .+...++++.++ +.. .++++.+||||||||++|||||+++|+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999998999999998765443221 234566777776 454 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
++||||||+|||+.++..+.+.|.+++++ |+|+|++||+++++.. ||++++|++|+++..|+++++
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998765 8999999999999976 999999999999999998887
No 163
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.98 E-value=2.4e-31 Score=233.92 Aligned_cols=146 Identities=23% Similarity=0.332 Sum_probs=127.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH-h---cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS-L---YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.++|+||++.++..+|+.||+.++.. . +.....+..+++.++++.+++.+ .++++.+||||||||++|||||+.
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred hheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 469999999988888899999987532 1 12222334457888999999976 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|+++||||||+|||+.++..+.++|++++++|.|||++||+++++.. ||+|++|++|+++..|+++++..
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999987778999999999999965 99999999999999999888754
No 164
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.4e-31 Score=230.22 Aligned_cols=146 Identities=23% Similarity=0.335 Sum_probs=126.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||+||++.+|+.+|+.||+.+.....+. ..++..+++.++++.+++. . .++++++||||||||++|||||+
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 4699999999999989999999876544332 2334456666777777652 2 47789999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|++|||||||+|||+.++..+.+.|+++++ ++|+|++||+++++.. ||++++|++|++++.|+++++...
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999864 7999999999999976 999999999999999999998764
No 165
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-31 Score=256.76 Aligned_cols=145 Identities=21% Similarity=0.333 Sum_probs=129.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY--R-ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
+.+||+||++.+++.+|++||+.++...+ + .+.++..++++++++.+++.. .++++++||||||||++|||||+.+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~ 161 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQ 161 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 56999999999999999999999875432 2 234455667889999999975 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
|++|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 162 ARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999997779999999999999976 9999999999999999887763
No 166
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=1.8e-31 Score=228.25 Aligned_cols=138 Identities=28% Similarity=0.420 Sum_probs=116.8
Q ss_pred CcEEEEeCCCCCC--CCCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALF--DEFTIAETFQFYASLYR----ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~--~~lTv~enl~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.+||+||++.++ ..+|++||+.+....+. ...++..++++++++.+++++ .++++.+||||||||++|||||
T Consensus 68 ~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 68 KRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred hheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 5699999998763 23799999987543211 122344567888999999975 6888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+.+|++|||||||+|||+.++..+.+.|++++++|+|+|++||+++++.. ||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999987779999999999999976 9999999886 44443
No 167
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=3.2e-31 Score=228.39 Aligned_cols=140 Identities=30% Similarity=0.367 Sum_probs=118.7
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCC-HHHHHHH-HHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYRIS-SEEFRAK-MKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~-~~~~~~~-~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++ .+++.+|++||+.+....++.. ..+..+. +.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 35799999998 4667789999998865544322 2222222 35788999995 4 5888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999776 8999999999999975 9999999999997654
No 168
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.5e-31 Score=233.16 Aligned_cols=148 Identities=25% Similarity=0.338 Sum_probs=126.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+. |++||+.++....+. ......+++.++++.+++. . .++++++||||||||++|||||
T Consensus 101 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 101 RREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 3569999999998885 999999986544332 2233445677788888873 2 4678999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++..+..
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 255 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPK 255 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999999999999999999865 6899999999999875 99999999999999999999876543
No 169
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.6e-31 Score=230.30 Aligned_cols=146 Identities=22% Similarity=0.412 Sum_probs=126.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI--SSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArA 80 (249)
.+.+||+||++.+|+. |+.||+.+....++. ...+..+.+.++++.+++.. .++.+.+||||||||++||||
T Consensus 85 ~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 163 (251)
T PRK14244 85 RAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163 (251)
T ss_pred hhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence 4579999999998886 999999887544332 23344566788899999853 356789999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999985 48999999999999976 999999999999999999988764
No 170
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=255.78 Aligned_cols=145 Identities=26% Similarity=0.394 Sum_probs=129.0
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY---R-ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~---~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||+||++.+++.+||+||+.++...+ + .+..+.++++.++++.+++.+ .++++++||||||||++|||||+.
T Consensus 79 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred CCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc
Confidence 46999999999999999999999864332 1 234455667889999999976 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
+|++|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||+|++|++|+++..|+++++.
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999997779999999999999976 9999999999999999887653
No 171
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.7e-31 Score=229.55 Aligned_cols=148 Identities=24% Similarity=0.369 Sum_probs=127.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++. |+.||+.+....++.. .++..++++++++.+++. . .++++.+||||||||++|||||
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 4569999999999885 9999999876544433 233456677778888863 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.+|+++||||||+|||+.++..+.++|+++. +|+|||++||+++++.. ||++++|++|+++..|+++++.....
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999984 58999999999999976 99999999999999999999876543
No 172
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=3.9e-31 Score=231.89 Aligned_cols=145 Identities=23% Similarity=0.382 Sum_probs=127.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc----
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH---- 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~---- 83 (249)
+.+||+||++.+++.+|+.+|+.++... ....++..+++.++++.+++.+ .++++.+||||||||++|||||++
T Consensus 69 ~~i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 69 RHRAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred hheEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 4599999999888888999999876322 2333445667889999999976 688899999999999999999998
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 ---TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ---~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999987779999999999999865 99999999999999999888754
No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.8e-31 Score=234.76 Aligned_cols=146 Identities=27% Similarity=0.413 Sum_probs=126.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.++|+||++.+++.+|+.||+.+..... +.......+++.++++.+++.+ .++++++||||||||++|||||+.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 46999999998888899999998753211 1112334567788999999975 688899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.+++.+.+.|++++++ |.|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999998765 8999999999999975 99999999999999999888754
No 174
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.97 E-value=2.1e-31 Score=259.00 Aligned_cols=144 Identities=25% Similarity=0.353 Sum_probs=119.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE-----LQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.++||||||++.+|+. |++|||.++.. ..++++..+.++. .++.+ |++. ....-.+||||||||++|||
T Consensus 422 r~~i~~v~Q~~~LF~~-TI~eNI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialAR 498 (588)
T PRK11174 422 RKHLSWVGQNPQLPHG-TLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALAR 498 (588)
T ss_pred HhheEEecCCCcCCCc-CHHHHhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 4579999999999997 99999998632 3455555444432 12222 2221 12233679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|++||||||||+||+.+++.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++|+.++
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 9999999999999999999999999999999974 57999999999999999999999999999999999999875
No 175
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=2.9e-31 Score=282.41 Aligned_cols=149 Identities=30% Similarity=0.525 Sum_probs=139.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.|||+||++.+++.+|++||+.+++++++.+.++.+++++++++.++|.+ .++++++||||||||+++|+||+++|++
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V 2091 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL 2091 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999999999999999888888777777778889999999976 7899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+||||||+||||.+++.+++.|++++++|+|||++||++++++. ||||++|++|+++..|+++++..+.+
T Consensus 2092 LLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2092 VLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999987789999999999999986 99999999999999999999987654
No 176
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.6e-31 Score=238.83 Aligned_cols=148 Identities=22% Similarity=0.340 Sum_probs=127.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEE-FRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~-~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+ .|++||+.|+....+.+.++ ..+.+.++++.+++. . .+++..+||||||||++|||||
T Consensus 162 r~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl 240 (329)
T PRK14257 162 RTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAI 240 (329)
T ss_pred hccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 457999999999987 59999999875544443333 334567778888773 2 4678899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+++|++|||||||+|||+.+...+.+.|+++.+ ++|+|++||+++++.. ||||++|++|++++.|+++++.+...
T Consensus 241 ~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 241 ALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPK 316 (329)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 999999999999999999999999999999865 6999999999999977 99999999999999999999987544
No 177
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=5.2e-31 Score=253.17 Aligned_cols=145 Identities=28% Similarity=0.419 Sum_probs=128.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC------CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP------DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+++||+||++.+++.+||.||+.+.... ..+.++.++++.++++.+++.. .++++.+||||||||++|||||+
T Consensus 365 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~ 443 (520)
T TIGR03269 365 RYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI 443 (520)
T ss_pred hhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 4699999999999999999999875432 3334444567888999999963 47889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
.+|++|||||||+|||+.+++.+++.|++++++ |.|||++||+++++.. ||++++|++|+++..|+++++.+
T Consensus 444 ~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 444 KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999765 9999999999999976 99999999999999999888764
No 178
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=3.5e-31 Score=241.29 Aligned_cols=150 Identities=25% Similarity=0.384 Sum_probs=139.4
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASLYR--ISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+-+|||+| +|-|.+||.+.|.-+..... .+..++.+++.++++.+||+. .+|+++++|||||||++||||+
T Consensus 362 R~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl 441 (534)
T COG4172 362 RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL 441 (534)
T ss_pred hhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH
Confidence 34588999998 68899999999999888764 678899999999999999975 6999999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.+|++++||||||+||..-+.++.++|++|.++ |.+.+++|||+..++. ||+|+||++|+|+++|+.++++++..
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~ 519 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQ 519 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCC
Confidence 9999999999999999999999999999999776 9999999999999987 99999999999999999999998754
No 179
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-31 Score=233.27 Aligned_cols=146 Identities=23% Similarity=0.327 Sum_probs=126.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc-C---CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY-R---ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||+||++.+++..|+.||+.++.... + ...+...+++.++++.+++.+ .++++.+||||||||++||||++.
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence 46999999999988899999998752111 1 112334557788999999975 688999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|+++||||||+|||+.++..+.+.|+++.++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999998764 8999999999999976 99999999999999999988764
No 180
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.97 E-value=7.8e-31 Score=228.25 Aligned_cols=140 Identities=33% Similarity=0.569 Sum_probs=124.2
Q ss_pred CCcEEEEe-CCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMP-QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~-Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||++ |++.+++.+|++||+.+....++...++..+++.++++.+++++ .++++.+||||||||++|||||+++|
T Consensus 93 ~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p 172 (236)
T cd03267 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP 172 (236)
T ss_pred cccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 45799998 56778888999999998766666555666677888999999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
++|||||||+|||+.+++.+.++|++++++ |.|||++||+++++.. ||++++|++|++++.|
T Consensus 173 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 173 EILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998765 8999999999999976 9999999999998654
No 181
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=228.12 Aligned_cols=146 Identities=25% Similarity=0.409 Sum_probs=126.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||++|++.+|+ .|++||+.++...++.. .+...+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 356999999999887 69999998865544433 333456677888988883 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999854 7999999999999876 999999999999999999988654
No 182
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=7.4e-31 Score=226.58 Aligned_cols=145 Identities=28% Similarity=0.407 Sum_probs=124.0
Q ss_pred CcEEEEeCCCCCCC--CCCHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFD--EFTIAETFQFYASL----YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~--~lTv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.+||+||++.++. .+|+.||+.++... ...+..+.++++.++++.+++.+ .++++++||||||||++|||||
T Consensus 49 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 128 (223)
T TIGR03771 49 RHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL 128 (223)
T ss_pred CcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 56999999987643 37999999875321 11122334556888999999976 6888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+++|+++||||||+|||+.++..+.+.|++++++|+|+|++||+++++.. ||+++++ +|+++..|+++++.+
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99999999999999999999999999999987779999999999999975 9999999 899999999988765
No 183
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=5.3e-31 Score=232.56 Aligned_cols=137 Identities=24% Similarity=0.355 Sum_probs=121.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+++.+|++||+.+... . ...+++.++++.+++.+ .++++.+||||||||++|||||+++|+
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999998999999987521 1 12456778899999976 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPE 150 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~ 150 (249)
+|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++++.. ||++++|++|+++.+++.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999865 48999999999999865 9999999999999888754
No 184
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=229.11 Aligned_cols=147 Identities=20% Similarity=0.360 Sum_probs=127.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.++|+||++.+|+ .|+.||+.+....++. +..+..+++.++++.+++. + .++++.+||||||||++|||||
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 346999999999888 7999999887544443 3344456678889998873 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEeC-----CEEEEecChhHHHH
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMRK-----GVLLAEKSPEELIA 154 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~~-----G~iv~~g~~~el~~ 154 (249)
+++|++|||||||+|||+.++..+.+.|+++++ +|+|||++||+++++.. ||+|++|++ |+++..|+++++.+
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 245 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFN 245 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHh
Confidence 999999999999999999999999999999865 48999999999999976 999999999 99999999999876
Q ss_pred h
Q psy4634 155 S 155 (249)
Q Consensus 155 ~ 155 (249)
.
T Consensus 246 ~ 246 (261)
T PRK14258 246 S 246 (261)
T ss_pred C
Confidence 4
No 185
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=227.52 Aligned_cols=146 Identities=24% Similarity=0.378 Sum_probs=125.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+ .|+.||+.+....++.. .+..++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 356999999999887 79999998865544432 334456677888888873 2 4678899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 999999999999999999999999999999865 5899999999999976 999999999999999998887653
No 186
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-31 Score=253.19 Aligned_cols=145 Identities=22% Similarity=0.344 Sum_probs=128.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH----hcCC---CHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS----LYRI---SSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~----~~~~---~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.+||+||++.+++.+||+||+.++.. .++. +.++..+++.++++.+++.+ .++++++|||||||||+||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 469999999999999999999987532 1221 23455677889999999976 689999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 999999999999999999999999999999998779999999999999976 9999999999999999888764
No 187
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=1.1e-30 Score=225.65 Aligned_cols=140 Identities=29% Similarity=0.434 Sum_probs=119.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHH-HHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI---SSEEFRAKMKE-LQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~---~~~~~~~~~~~-~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.+||+||++.+|+.+|+.||+.+....... .......++.+ .++.+++.. .++.+++||||||||++|||||+
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 46799999999999999999999987554321 22222334555 788889876 67889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh-hHHhc-cCEEEEEeCCEEEEec
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI-EEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l-~~~~~-~Dri~vl~~G~iv~~g 147 (249)
.+|+++||||||+|||+.++..+.+.|+++.++|.|+|++||++ +++.. ||++++|++|++++.|
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999877799999999999 57765 9999999999998764
No 188
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.97 E-value=2e-30 Score=228.31 Aligned_cols=147 Identities=24% Similarity=0.356 Sum_probs=127.3
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||+||++. ++..+|+.+|+.+.....+. ...+.++++.++++.+++. . .++.+.+||||||||++|||||+.
T Consensus 89 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred cceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc
Confidence 46999999984 66778999999865433221 2334566788899999996 3 578899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++++.. ||++++|++|+++..|+++++..+
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 169 HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998765 8999999999999975 999999999999999999998754
No 189
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=3.2e-31 Score=256.93 Aligned_cols=144 Identities=31% Similarity=0.487 Sum_probs=122.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HH-HcCCCC-CCCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QE-VLDLPP-DHRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~-~~~l~~-~~~~~----~~LSgGqkQRv~iAr 79 (249)
.+.||||||++.+|+. |++|||.++.. ..++++..++++.+ .+ ...+|+ .+..+ ..||||||||++|||
T Consensus 402 r~~I~~V~Qd~~LF~~-TI~~NI~~g~~--~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 402 RKRIGIVSQDPLLFSG-TIRENIALGRP--DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHhccEEcccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 4679999999999995 99999999754 35566666665544 11 123343 23333 589999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|++++|++|+||||||+||+.+++.+++.++++. +|+|+++++|+++.++.||+|++|++|++++.|+++|+.++
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999999876 67899999999999999999999999999999999999986
No 190
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=232.16 Aligned_cols=146 Identities=26% Similarity=0.401 Sum_probs=126.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+. |+.||+.++...++.. ....++++.++++.+++. + .++++.+||||||||++|||||
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 3579999999998885 9999999876544432 334456677888888873 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++..+
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999865 6899999999999976 999999999999999999998764
No 191
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.1e-30 Score=251.47 Aligned_cols=147 Identities=26% Similarity=0.360 Sum_probs=129.7
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASL-YRISSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.+||+||++. +++.+|+.+|+.+.... .+.+..+..++++++++.+++.+ .++++++|||||||||+|||||
T Consensus 92 ~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL 171 (529)
T PRK15134 92 NKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMAL 171 (529)
T ss_pred CceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHH
Confidence 46999999975 66778999998865433 24555666788899999999964 3788999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++|++|||||||+|||+.++..++++|++++++ |+|||++||+++++.. ||||++|++|+++..|+++++...
T Consensus 172 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 172 LTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA 247 (529)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhC
Confidence 9999999999999999999999999999999765 9999999999999976 999999999999999999988754
No 192
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.3e-31 Score=228.33 Aligned_cols=143 Identities=27% Similarity=0.467 Sum_probs=125.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++.+++ .|++||+.+.....+ . ...++.++++.++++ . .++++.+||||||||++|||||+++|
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 76 RRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hhcEEEEecCchhch-hhHHHHHhcchhhcC--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 356999999999887 599999987543322 1 134677889999996 4 57889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998764 9999999999999976 999999999999999999998754
No 193
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=230.30 Aligned_cols=146 Identities=27% Similarity=0.370 Sum_probs=126.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.++|+||++.+|+. |+.||+.+....++. ..+..++++.++++.+++.. .++.+.+||||||||++|||||
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 4579999999999986 999999887554443 23334566788888888842 4678899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++|+++||||||+|||+.++..+++.|+++++ +.|+|++||+++++.. ||++++|++|+++..|+++++...
T Consensus 184 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 999999999999999999999999999999865 7899999999999975 999999999999999999988654
No 194
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=226.40 Aligned_cols=147 Identities=25% Similarity=0.375 Sum_probs=125.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++ .|+.||+.+....++.. .+...+++.+.++.+++. . .++.+.+||||||||++|||||
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 357999999999888 69999999875544432 233345566778877763 2 4678899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+.+|++|||||||+|||+.++..+.+.|+++.+ +.|+|++||+++++.. ||+|++|++|+++..|++.++..+.
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999865 5899999999999975 9999999999999999998887653
No 195
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=227.09 Aligned_cols=146 Identities=28% Similarity=0.436 Sum_probs=126.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.++|+||++.+++ .|++||+.++...++. +.+..++.+.++++.+++.. .++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 357999999999888 7999999987654443 23345566778888888842 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|++|||||||+|||+.++..+++.|+++++ ++|+|++||+++++.. ||++++|++|+++..|+++++...
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999999864 7999999999999865 999999999999999999988654
No 196
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=2.7e-31 Score=218.24 Aligned_cols=138 Identities=28% Similarity=0.344 Sum_probs=129.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+++|+|||.+.|.|++|..||+..++.+.+-...+.+..+.++++.+||.+ .+.+++||||||||||+||||++..|+
T Consensus 87 ~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~ 166 (228)
T COG4181 87 ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPD 166 (228)
T ss_pred ccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCC
Confidence 6789999999999999999999999999988666666778889999999987 578899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLA 145 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~ 145 (249)
+|+-||||.+||..+-.++.+++..++++ |.|.++||||...+..|+|++-|.+|+++.
T Consensus 167 vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 167 VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred EEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 99999999999999999999999999776 999999999999999999999999999975
No 197
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=228.02 Aligned_cols=145 Identities=22% Similarity=0.358 Sum_probs=125.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||+||++.+|+ .|++||+.++...++ .+..+..+++.++++.+++. + .++++.+||||||||++|||||+
T Consensus 88 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 88 RQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 46999999999998 799999988655433 23344456677888888873 2 57788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEe-----CCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMR-----KGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~-----~G~iv~~g~~~el~~~ 155 (249)
++|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|+ +|+++..|+++++.+.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcC
Confidence 99999999999999999999999999999865 6999999999999976 99999998 5999999999998654
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=7.5e-31 Score=251.71 Aligned_cols=142 Identities=25% Similarity=0.386 Sum_probs=127.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+++.+||+||+.++... ..+.++++.++++.+++.. .++++++||||||||++|||||+++|++
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 4699999999999999999999875421 2334567888999999976 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999998779999999999999976 99999999999999999887754
No 199
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=231.44 Aligned_cols=145 Identities=21% Similarity=0.379 Sum_probs=125.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.++|+||++.+|+. |+.||+.+....++.+. +..+++.++++.+++. . .++++.+||||||||++|||||+
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 4579999999998885 99999998765544433 4456788899999884 2 47788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEE-EEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVG-LMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~-vl~~G~iv~~g~~~el~~~ 155 (249)
++|++|||||||+|||+.+++.+.+.|++++++ .|||++||+++++.. |||++ +|++|+++..|+++++..+
T Consensus 197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 197 PDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998764 899999999999976 99975 6799999999999888654
No 200
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.2e-30 Score=277.80 Aligned_cols=148 Identities=34% Similarity=0.583 Sum_probs=137.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+++.+||+||+.++++.++.+.++.+++++++++.++|.+ .++++++||||||||++||+||+.+|++
T Consensus 1003 ~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred hcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 569999999999999999999999888877776677788999999999986 6899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+||||||+||||.+++.++++|++++ +|+|||++||+++++.. ||||++|++|+++..|+++++.++.+
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 99999999999999999999999984 69999999999999976 99999999999999999999977544
No 201
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-30 Score=226.12 Aligned_cols=146 Identities=25% Similarity=0.385 Sum_probs=126.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+. ||+||+.+....++. ...+.++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 3569999999999885 999999987665443 2334456677888888873 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|+++||||||+|||+.+++.+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence 999999999999999999999999999999865 6899999999999975 999999999999999999988754
No 202
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-30 Score=229.51 Aligned_cols=145 Identities=23% Similarity=0.370 Sum_probs=124.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||+||++.+|+. |++||+.+....++.. .+..+++.++++.+++. . .++++.+||||||||++|||||++
T Consensus 94 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 94 RRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred hceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 469999999998885 9999999876544433 23345667778888763 2 477889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeC-----------CEEEEecChhH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRK-----------GVLLAEKSPEE 151 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~-----------G~iv~~g~~~e 151 (249)
+|++|||||||+|||+.++..++++|++++ ++.|||++||+++++.. ||++++|++ |++++.|++++
T Consensus 172 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 172 EPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence 999999999999999999999999999985 47999999999999976 999999996 67899999999
Q ss_pred HHHhc
Q psy4634 152 LIASY 156 (249)
Q Consensus 152 l~~~~ 156 (249)
+.+..
T Consensus 251 ~~~~~ 255 (269)
T PRK14259 251 IFNSP 255 (269)
T ss_pred HHhCc
Confidence 87643
No 203
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=4.1e-30 Score=225.92 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=125.5
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||+||++. +.+.+|+.+|+.+.....+.... .+++.++++.+++.. .++.+.+||||||||++|||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~ 156 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL 156 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence 57999999985 44557999998776544443322 356788999999964 37788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999999999998765 8999999999999965 999999999999999999998764
No 204
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=238.11 Aligned_cols=151 Identities=31% Similarity=0.417 Sum_probs=137.4
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCC----CCCCcCcCChHHHHHHHHHHH
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASL-YRISSEEFRAKMKELQEVLDLPP----DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQRv~iArA 80 (249)
..+|+++||+| +|.|-.|+...+.-..+. ++++.++.++++.++++.+|+++ .+.++++|||||||||.||.|
T Consensus 92 G~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMA 171 (534)
T COG4172 92 GNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMA 171 (534)
T ss_pred ccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHH
Confidence 45799999998 567777988888776665 46888999999999999999974 277899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
|+++|++||-||||++||..-+.+++++|++|+++ |..++++|||++.++. ||||+||.+|++++.|+.++++....+
T Consensus 172 Lan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqH 251 (534)
T COG4172 172 LANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQH 251 (534)
T ss_pred HcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCC
Confidence 99999999999999999999999999999999877 9999999999999987 999999999999999999999987543
No 205
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.7e-30 Score=227.94 Aligned_cols=146 Identities=24% Similarity=0.361 Sum_probs=127.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.|||+||++.+|+ .|++||+.++....+. ...+..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 100 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 100 RKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred hcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 456999999999887 5999999986554333 3344566778889998884 2 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++|++|||||||+|||+.++..+.++|+++. ++.|||++||+++++.. ||++++|++|++++.|+++++...
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999985 47999999999999965 999999999999999999988654
No 206
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-30 Score=228.96 Aligned_cols=146 Identities=27% Similarity=0.393 Sum_probs=127.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.++|+||++.+|+ .|++||+.++....+ .+.++.++++.++++.+++.. .++.+.+||||||||++|||||
T Consensus 100 ~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred hhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 457999999999988 799999988654333 344555566778889888852 3677899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++|+++||||||+|||+.+++.+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++.+.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999875 5899999999999976 999999999999999999998765
No 207
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=249.20 Aligned_cols=145 Identities=21% Similarity=0.314 Sum_probs=128.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS-LYR--ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
+.+||+||++.+++.+||+||+.++.. ..+ .+.++..++++++++.+++.. .++++++|||||||||+|||||+++
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 569999999999999999999987542 112 233445567889999999975 6888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
|++|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999998779999999999999976 9999999999999999887753
No 208
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-30 Score=228.59 Aligned_cols=146 Identities=23% Similarity=0.378 Sum_probs=123.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCC----CC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDL----PP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l----~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+. |+.||+.++...++.. .+..++.+.++++.+++ .+ .++++.+||||||||++|||||
T Consensus 104 ~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 104 RTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 3569999999998875 9999999876544432 22334556677776643 33 4778899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 999999999999999999999999999999865 7999999999999976 999999999999999999998754
No 209
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1.5e-30 Score=248.89 Aligned_cols=144 Identities=24% Similarity=0.373 Sum_probs=126.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc--C--CCHHHHHHHHHHHHHHcCCCC-C-CCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY--R--ISSEEFRAKMKELQEVLDLPP-D-HRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||+||++.+++.+|+.||+.++...+ + ...++..++++++++.+++.. . ++++++||||||||++|||||+
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 46999999999999999999998864432 1 234455667889999999975 3 5779999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||+|++|++|+++..++++++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999998779999999999999976 999999999999998877654
No 210
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=2.4e-30 Score=219.87 Aligned_cols=131 Identities=34% Similarity=0.453 Sum_probs=117.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||++|++.+|+.+|++||+.+.....+....+..+++.++++.+++++ .++++.+||||||||++|||||+++|+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~ 154 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPP 154 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999998999999998765555555566778889999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM 138 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl 138 (249)
+|||||||+|||+.++..+.+.|+++.++|.|+|++||+++.+..||++++|
T Consensus 155 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 155 LILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999876799999999999977669999875
No 211
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-30 Score=248.93 Aligned_cols=144 Identities=22% Similarity=0.343 Sum_probs=125.8
Q ss_pred CcEEEEeCCC---CCCCCCCHHHHHHHHHH--hcC---CCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHH
Q psy4634 9 TYIGFMPQET---ALFDEFTIAETFQFYAS--LYR---ISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIA 78 (249)
Q Consensus 9 ~~Ig~v~Q~~---~l~~~lTv~enl~~~~~--~~~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iA 78 (249)
+.+||+||++ .+++.+|+.||+.++.. .++ ...++.+++++++++.+++. + .++++++||||||||++||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 4599999996 47888999999987532 221 13344556788999999995 4 6889999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
|||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. ||++++|++|+++..|+++++
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999999999999999998789999999999999976 999999999999999988765
No 212
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-30 Score=226.54 Aligned_cols=146 Identities=23% Similarity=0.367 Sum_probs=124.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.+||++|++.+|+. |+.||+.++....+.. .+..+++.++++.+++. . .++++.+||||||||++|||||+
T Consensus 90 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 90 RRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred hhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3569999999998885 9999998875443322 23345566777777763 2 46788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEe---------CCEEEEecChhHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMR---------KGVLLAEKSPEEL 152 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~---------~G~iv~~g~~~el 152 (249)
.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++++.. ||++++|+ +|++++.|+++++
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 99999999999999999999999999999865 5899999999999976 99999998 8999999999999
Q ss_pred HHhc
Q psy4634 153 IASY 156 (249)
Q Consensus 153 ~~~~ 156 (249)
....
T Consensus 247 ~~~~ 250 (264)
T PRK14243 247 FNSP 250 (264)
T ss_pred HhCC
Confidence 7653
No 213
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.4e-30 Score=223.80 Aligned_cols=145 Identities=21% Similarity=0.379 Sum_probs=126.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
+.+||+||++.+|+. |+.||+.+....++. ..+..++++.++++.+++. . .++++.+||||||||++|||||+
T Consensus 84 ~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 84 KKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 569999999999985 999999876544432 2344567788889998873 2 47788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|++|||||||+|||+.++..+.+.|+++++ |.|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 99999999999999999999999999999854 7999999999999976 999999999999999999998654
No 214
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.7e-30 Score=224.27 Aligned_cols=147 Identities=24% Similarity=0.358 Sum_probs=129.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-SSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+++.+|+.||+.++....+. +.++.++++.++++.+++. + .++.+..||+|||||++|||||
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 35699999999999989999999987543332 3445567788899999985 2 4678899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||+++++.. ||++++|++|+++..|+++++..+
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999864 6999999999999965 999999999999999999998764
No 215
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=223.34 Aligned_cols=148 Identities=25% Similarity=0.442 Sum_probs=128.9
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 7 GSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD-LPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 7 ~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
-+..|+||||....|+.+||.||+..+...... ++..+..++++.+.|- |.+ .+++.++|||||||.++|||||+.+
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 356799999999999999999999987654322 1222222777788775 555 6888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|++|+|||||.||-|.-.+++.+.|++++++ |.||++|.++...+.. +||.++|.+|+|+.+|+.+++..+
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999876 8899999999999976 999999999999999999999875
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7e-30 Score=227.16 Aligned_cols=147 Identities=22% Similarity=0.345 Sum_probs=124.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.|||+||++.+|+. |+.||+.++...++.. ....+.+.++++.+++. + .++++.+||||||||++|||||+
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3579999999998875 9999998865443322 22334566777887763 2 47788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEe---------CCEEEEecChhHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMR---------KGVLLAEKSPEEL 152 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~---------~G~iv~~g~~~el 152 (249)
.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|+ +|++++.|+++++
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 99999999999999999999999999999864 6899999999999975 99999998 8999999999998
Q ss_pred HHhcC
Q psy4634 153 IASYG 157 (249)
Q Consensus 153 ~~~~~ 157 (249)
.....
T Consensus 257 ~~~~~ 261 (274)
T PRK14265 257 FGSPQ 261 (274)
T ss_pred HhCCC
Confidence 76543
No 217
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=6.8e-31 Score=258.95 Aligned_cols=144 Identities=31% Similarity=0.493 Sum_probs=120.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HH-HcCCCC-CCCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QE-VLDLPP-DHRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~-~~~l~~-~~~~~----~~LSgGqkQRv~iAr 79 (249)
.++||||+|++.+|.. |++||+.++.. ..+.+++.+++..+ -+ ..++|. .+..+ ..||||||||++|||
T Consensus 546 R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 546 RRQVGYVLQDPFLFSG-SIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALAR 622 (709)
T ss_pred HhheeEEcccchhhcC-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 5789999999999987 99999998754 33444544443321 11 223443 23333 789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|++||||||||+||+.+++.+.+.|.++. .|+|+|++||+++.++.||||++|++|+|+++|+++|+...
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999999999975 57999999999999999999999999999999999999986
No 218
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=4.3e-30 Score=221.03 Aligned_cols=136 Identities=32% Similarity=0.414 Sum_probs=121.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++.+|+.+|+.||+.+....+. .+.++.++++.++++.+++.+ .++++.+||+|||||++|||||+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 3579999999999998999999998765543 445566678889999999975 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhccCEEEEEeCCEE
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQANVVGLMRKGVL 143 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~~Dri~vl~~G~i 143 (249)
+++||||||+|||+.++..+.+.|+++.+ .|+|+|++||+++....||++++|++|++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999876 48999999999986656999999999986
No 219
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=244.92 Aligned_cols=146 Identities=32% Similarity=0.475 Sum_probs=120.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH--HHHHcCCCC-CCCCc----CcCChHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE--LQEVLDLPP-DHRTC----STLSGGQVRRVSIAVT 80 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~-~~~~~----~~LSgGqkQRv~iArA 80 (249)
.++++||+|+|.+|+. |++||+.++.. ..+++++.+.+++ +.+.++-++ .|..+ ..|||||+||+++|||
T Consensus 394 ~k~i~~v~Q~p~lf~g-TireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 394 RKQISWVSQNPYLFAG-TIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred HhHeeeeCCCCccccc-cHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHH
Confidence 4679999999999998 99999998744 3444444444332 122222222 23334 4599999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
|+++++++|+||||++||.++++.+.+.|.++++ ++|++++||++..+..||+|++|++|++++.|+++++..+.+
T Consensus 471 ll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~ 546 (559)
T COG4988 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG 546 (559)
T ss_pred hcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCc
Confidence 9999999999999999999999999999999875 599999999999999999999999999999999999987643
No 220
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=1.3e-29 Score=222.28 Aligned_cols=147 Identities=24% Similarity=0.343 Sum_probs=124.8
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.+||++|++. ++...|+.+|+.+...... ....+.++.+.++++.+++. . .++.+++||||||||++|||||+.
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhc
Confidence 46999999974 4556789999976432221 12223456778899999996 3 588899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|++|||||||+|||+.+++.+.+.|+++.++ |.|+|++||+++++.. ||++++|++|+++..|+++++..+
T Consensus 166 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 166 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998654 8999999999999975 999999999999999999888754
No 221
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=224.05 Aligned_cols=145 Identities=25% Similarity=0.404 Sum_probs=125.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-----CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-----DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.+||+||++.+|. +|+.||+.++...++. ..+..+++.++++.+++.. .++++.+||||||||++|||||+
T Consensus 88 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 88 RRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhceEEEecCCcccc-ccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 356999999999884 8999999987654432 2344567888899998842 25677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEe--------CCEEEEecChhHHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMR--------KGVLLAEKSPEELI 153 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~--------~G~iv~~g~~~el~ 153 (249)
++|++|||||||+|||+.++..+++.|+++. ++.|+|++||+++++.. ||++++|+ +|++++.|+++++.
T Consensus 166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 166 TEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999999999999999999999999985 47999999999999976 99999996 89999999999987
Q ss_pred Hh
Q psy4634 154 AS 155 (249)
Q Consensus 154 ~~ 155 (249)
+.
T Consensus 245 ~~ 246 (261)
T PRK14263 245 QN 246 (261)
T ss_pred hC
Confidence 64
No 222
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=4.3e-30 Score=228.49 Aligned_cols=146 Identities=21% Similarity=0.302 Sum_probs=124.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh-
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL- 82 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~- 82 (249)
+.++|+||++.++..+|+.||+.+..... +....+..+++.++++.+++.. .++++.+||||||||++|||||+
T Consensus 83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 35899999987655689999998753211 1112334566788999999975 68889999999999999999999
Q ss_pred --------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 83 --------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 83 --------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++++.. ||++++|++|+++..|+++++
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 599999999999999999999999999998776 8999999999999975 999999999999999998887
Q ss_pred HH
Q psy4634 153 IA 154 (249)
Q Consensus 153 ~~ 154 (249)
..
T Consensus 243 ~~ 244 (272)
T PRK13547 243 LT 244 (272)
T ss_pred cC
Confidence 54
No 223
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=9e-30 Score=225.68 Aligned_cols=147 Identities=24% Similarity=0.335 Sum_probs=128.2
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASL-YRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.+||+||++ .+++..|+.+|+.+.... .+....+...+++++++.+++. . .++++.+||||||||++|||||+
T Consensus 88 ~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~ 167 (268)
T PRK10419 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA 167 (268)
T ss_pred HhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh
Confidence 35799999998 366778999999765432 2344455566788999999996 4 68889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++|++|||||||+|||+.++..+.+.|++++++ |.|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 999999999999999999999999999998765 8999999999999976 99999999999999999988764
No 224
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.1e-30 Score=245.36 Aligned_cols=141 Identities=22% Similarity=0.295 Sum_probs=124.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH--hcC-CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS--LYR-ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
+.|||+||++.+++.+|+.||+.++.. .++ .+..+.++++.++++.+++.. .++++++||||||||++|||||+.+
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 569999999999999999999998542 122 234455677889999999975 6888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecCh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSP 149 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~ 149 (249)
|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999997779999999999999976 999999999999876653
No 225
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=2.4e-30 Score=224.62 Aligned_cols=143 Identities=29% Similarity=0.458 Sum_probs=117.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-----KMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.+||+||++.+++ .|+.||+.++.. ......... .+.++++.+ +++. .++++.+||||||||++||||
T Consensus 76 ~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 76 RQVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred hcEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 56999999998876 599999987432 222222111 123344444 4443 467889999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||+++++..||++++|++|+++..|+++++...
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999999999986 48999999999999966999999999999999999988765
No 226
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=223.35 Aligned_cols=147 Identities=22% Similarity=0.332 Sum_probs=126.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCC----C-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISS-EEFRAKMKELQEVLDLP----P-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
.+.+||+||++.+|+. |++||+.++....+.+. ...++++.++++.+++. . .++.+.+||||||||++|||||
T Consensus 98 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 176 (265)
T PRK14252 98 RMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176 (265)
T ss_pred hccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3469999999999986 99999988755444332 23345677788888763 2 4678899999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..|+.+++..+.
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 251 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKP 251 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999865 6899999999999975 9999999999999999999887543
No 227
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=4.7e-30 Score=245.59 Aligned_cols=144 Identities=22% Similarity=0.402 Sum_probs=125.4
Q ss_pred CcEEEEeCCC---CCCCCCCHHHHHHHHHH--hc---C-CCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHH
Q psy4634 9 TYIGFMPQET---ALFDEFTIAETFQFYAS--LY---R-ISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSI 77 (249)
Q Consensus 9 ~~Ig~v~Q~~---~l~~~lTv~enl~~~~~--~~---~-~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~i 77 (249)
+.+||+||++ .+++.+|+.||+.+... .. + .+.++.+++++++++.+++. . .++++++||||||||++|
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAI 406 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHH
Confidence 4699999996 57888999999987532 11 1 23334456788999999994 4 688999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
||||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 407 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999998779999999999999976 999999999999999887765
No 228
>PLN03211 ABC transporter G-25; Provisional
Probab=99.97 E-value=8.2e-30 Score=250.98 Aligned_cols=147 Identities=31% Similarity=0.414 Sum_probs=129.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCC-C-----CCCcCcCChHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY---RISSEEFRAKMKELQEVLDLPP-D-----HRTCSTLSGGQVRRVSIA 78 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~-----~~~~~~LSgGqkQRv~iA 78 (249)
.+++|||+|++.+++.+||+||+.+.+..+ ..+.++.+++++++++.+||.+ . ++.+++||||||||++||
T Consensus 139 ~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia 218 (659)
T PLN03211 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA 218 (659)
T ss_pred ccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence 356999999999999999999999876543 2345566678899999999965 3 345688999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh-HHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE-EARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~-~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++|+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.. ||++++|++|+++..|+++++..
T Consensus 219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999999999999999999878999999999998 4655 99999999999999999998864
No 229
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=245.87 Aligned_cols=145 Identities=19% Similarity=0.330 Sum_probs=125.4
Q ss_pred CcEEEEeCCC---CCCCCCCHHHHHHHHHHhc----C--CCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHH
Q psy4634 9 TYIGFMPQET---ALFDEFTIAETFQFYASLY----R--ISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSI 77 (249)
Q Consensus 9 ~~Ig~v~Q~~---~l~~~lTv~enl~~~~~~~----~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~i 77 (249)
+.+||+||++ .+++.+|+.||+.++...+ + ....+.++++.++++.+++. . .++++.+||||||||++|
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHH
Confidence 5699999997 3888899999998753221 1 12233345678899999994 4 689999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
||||+.+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. ||++++|++|++++.|++++..
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999998889999999999999976 9999999999999999887653
No 230
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=7.6e-30 Score=220.97 Aligned_cols=144 Identities=28% Similarity=0.411 Sum_probs=119.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-----KMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.+||+||++.+++ .|++||+.++...+ ...+..+ .+.+.++.+ ++.. .++++.+||||||||++|||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHH
Confidence 356999999999887 59999998754321 2222221 234455555 5554 56778999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|+++||||||+|||+.++..+.+.|+++. +|+|||++||+++++..||++++|++|+++..++++++...
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999999999999986 48999999999999966999999999999999999888654
No 231
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=4e-29 Score=221.41 Aligned_cols=145 Identities=16% Similarity=0.267 Sum_probs=129.1
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEE
Q psy4634 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVI 89 (249)
Q Consensus 11 Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLl 89 (249)
+++++|++.+++.+|+.||+.+.....+.+.++..+.+.++++.+++.. .++++++||||||||++||||++++|++||
T Consensus 87 ~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLl 166 (264)
T PRK13546 87 VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV 166 (264)
T ss_pred EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 5688888878888999999987655555555566666778888889976 688899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 90 LDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|||||+|||+.++..+.+.|.+++++|+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 167 LDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 167 IDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 999999999999999999999987779999999999999976 999999999999999999998764
No 232
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.1e-30 Score=244.39 Aligned_cols=141 Identities=21% Similarity=0.390 Sum_probs=122.0
Q ss_pred CcEEEEeCC---CCCCCCCCHHHHHHHHHHhc--------CC-CHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHH
Q psy4634 9 TYIGFMPQE---TALFDEFTIAETFQFYASLY--------RI-SSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRR 74 (249)
Q Consensus 9 ~~Ig~v~Q~---~~l~~~lTv~enl~~~~~~~--------~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQR 74 (249)
+.+||+||+ +.+++.+|++||+.+....+ +. .....++++.++++.+++. + .++++++||||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHH
Confidence 469999998 46888899999998753211 11 2233345678899999996 5 689999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecCh
Q psy4634 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSP 149 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~ 149 (249)
|+|||||+++|++|||||||+|||+.++..+.++|++++++|.|||++|||++++.. ||++++|++|+++..++.
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999998779999999999999976 999999999999987765
No 233
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=2e-29 Score=217.87 Aligned_cols=130 Identities=20% Similarity=0.281 Sum_probs=115.5
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy4634 18 TALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSG 96 (249)
Q Consensus 18 ~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsg 96 (249)
..+++.+|+.||+.++...++.+..+.++++.++++.+++++ .++++++||||||||++|||||+++|+++||||||+|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 456677899999998766555555556667888999999976 6888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 97 LDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 97 LD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
||+.+++.+++.|++++++|+|||++||+++++.. ||++++|++|+++..|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999987778999999999999975 9999999999998654
No 234
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=1.2e-29 Score=248.57 Aligned_cols=147 Identities=30% Similarity=0.449 Sum_probs=131.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCC-CCCCcC------cCChHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR---ISSEEFRAKMKELQEVLDLPP-DHRTCS------TLSGGQVRRVSI 77 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~------~LSgGqkQRv~i 77 (249)
.+.+||++|++.+++.+||+||+.|.+.++. .++++.+++++++++.+++.+ .|..++ .||||||||++|
T Consensus 98 ~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsi 177 (617)
T TIGR00955 98 RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAF 177 (617)
T ss_pred hhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHH
Confidence 4578999999999999999999999887642 345677788999999999976 577665 599999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh-HHh-ccCEEEEEeCCEEEEecChhHHHH
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE-EAR-QANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~-~~~-~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|++|+.+|++++|||||+|||+.++..+++.|++++++|+|||+++|+++ ++. .||++++|++|+++..|+++++..
T Consensus 178 a~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred HHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99999999999999999999999999999999999878999999999996 665 499999999999999999998754
No 235
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.97 E-value=6.9e-30 Score=252.70 Aligned_cols=137 Identities=28% Similarity=0.393 Sum_probs=115.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCC-CC----CcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PPD-HR----TCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~-~~----~~~~LSgGqkQRv 75 (249)
.+.||||||++.+|+. |++||+.++.. .+.++. .++++..++ +.. +. .-.+||||||||+
T Consensus 526 r~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~i----~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSG-SIFENIAGGAP---LTLDEA----WEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred HhccEEEccCCccCcc-cHHHHHhcCCC---CCHHHH----HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 4679999999999987 99999998633 344433 344444443 221 22 2367999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|++||||||||+||+.+++.+.+.|+++ ++|+|++||+++.++.||+|++|++|++++.|+++++.++
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999886 5899999999999999999999999999999999999875
No 236
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=4.5e-29 Score=218.54 Aligned_cols=142 Identities=22% Similarity=0.255 Sum_probs=121.7
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLY----R---ISSEEFRAKMKELQEVLDLP-P-DHRTCS-TLSGGQVRRVSIAV 79 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQRv~iAr 79 (249)
.++|++|++.+++.+|+.+|+.+....+ . ....+..+++.++++.++++ . .++++. +||||||||++|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 4889999999999999999998754321 1 11223446678889999996 3 577776 59999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh-c-cCEEEEEeCCEEEEecChhH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR-Q-ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~-~-~Dri~vl~~G~iv~~g~~~e 151 (249)
||+++|+++||||||+|||+.++..+.+.|++++++|+|||++||+++++. . ||++++|++|+++..|++++
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999998777999999999999986 4 89999999999999998874
No 237
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=1.1e-29 Score=226.35 Aligned_cols=139 Identities=21% Similarity=0.343 Sum_probs=119.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCc-----------CChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCST-----------LSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~-----------LSgGqkQRv 75 (249)
.+.|+|+||++.+|+. |+++|+.++. ..+. +++.++++.+++.. .++.+.+ ||||||||+
T Consensus 76 r~~i~~v~q~~~lf~~-tv~~nl~~~~---~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl 147 (275)
T cd03289 76 RKAFGVIPQKVFIFSG-TFRKNLDPYG---KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLM 147 (275)
T ss_pred hhhEEEECCCcccchh-hHHHHhhhcc---CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 3579999999999985 9999997432 1222 34556677888864 4555554 999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++++..||||++|++|++++.|+++++...
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC
Confidence 99999999999999999999999999999999999864 58999999999999877999999999999999999999874
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1e-29 Score=243.01 Aligned_cols=143 Identities=20% Similarity=0.332 Sum_probs=123.9
Q ss_pred CcEEEEeCCC---CCCCCCCHHHHHHHHHH--hc---CCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHH
Q psy4634 9 TYIGFMPQET---ALFDEFTIAETFQFYAS--LY---RISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIA 78 (249)
Q Consensus 9 ~~Ig~v~Q~~---~l~~~lTv~enl~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iA 78 (249)
+++||+||++ .+++.+|++||+.+... .. .....+.+++++++++.+++. . .++++++||||||||++||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 4699999996 58888999999987531 11 123344556788999999996 3 5889999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~e 151 (249)
|||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+++..++.++
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999998789999999999999976 99999999999998776543
No 239
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.3e-29 Score=243.17 Aligned_cols=146 Identities=22% Similarity=0.372 Sum_probs=124.8
Q ss_pred CcEEEEeCCC---CCCCCCCHHHHHHHHHH--h-cCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQET---ALFDEFTIAETFQFYAS--L-YRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~---~l~~~lTv~enl~~~~~--~-~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.|||+||++ .+++.+|+.+|+..... . ........+++++++++.++++ . .++++++||||||||++||||
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~a 417 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKC 417 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHH
Confidence 4699999985 57888999999864311 1 1112233345678899999996 4 688999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|+.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 418 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 999999999999999999999999999999998789999999999999976 99999999999999998877653
No 240
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.3e-29 Score=225.35 Aligned_cols=145 Identities=20% Similarity=0.332 Sum_probs=123.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc------------CCC-HHHHHHHHHHHHHHcCCC----C-CCCCcCcCChH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY------------RIS-SEEFRAKMKELQEVLDLP----P-DHRTCSTLSGG 70 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgG 70 (249)
+.+||+||++.+|+. |++||+.++.... +.. ....++++.++++.+++. . .++++.+||||
T Consensus 126 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 126 KRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 579999999998885 9999999864321 111 123356678888988874 2 46778999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEE-EEEeCCEEEEecC
Q psy4634 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVV-GLMRKGVLLAEKS 148 (249)
Q Consensus 71 qkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri-~vl~~G~iv~~g~ 148 (249)
||||++|||||+++|++|||||||+|||+.++..+.+.|+++++ ++|+|++||+++++.. ||++ ++|++|+++..|+
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~ 283 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD 283 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence 99999999999999999999999999999999999999999876 4899999999999976 9996 5789999999999
Q ss_pred hhHHHHh
Q psy4634 149 PEELIAS 155 (249)
Q Consensus 149 ~~el~~~ 155 (249)
++++...
T Consensus 284 ~~~~~~~ 290 (305)
T PRK14264 284 TDKIFEN 290 (305)
T ss_pred HHHHHhC
Confidence 9988754
No 241
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=2.6e-29 Score=244.73 Aligned_cols=139 Identities=22% Similarity=0.350 Sum_probs=117.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-CC----CCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-DH----RTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~----~~~~~LSgGqkQRv 75 (249)
.+.||||||++.+|++ |++|||.++. ..+.++ +.++++.+++ +. .+ ..-.+||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~----i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CCCHHH----HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 4679999999999998 9999999873 234443 3444444443 21 12 22367999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|++||||||||+||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++|+.++
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999999754 6999999999999989999999999999999999999875
No 242
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.96 E-value=2.6e-29 Score=244.63 Aligned_cols=144 Identities=28% Similarity=0.396 Sum_probs=116.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE-----LQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.|+|+||++.+|+. |++||+.++.. ..++++..+.++. .++.+ |++. ....-..||||||||++|||
T Consensus 408 r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialAR 484 (588)
T PRK13657 408 RRNIAVVFQDAGLFNR-SIEDNIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484 (588)
T ss_pred HhheEEEecCcccccc-cHHHHHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHH
Confidence 4679999999999986 99999998632 3344444333222 12211 2221 12223579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|+++|||||||+||+.+++.+.+.|+++. +++|+|++||+++.++.||+|++|++|++++.|+++++..+
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9999999999999999999999999999999864 47999999999999988999999999999999999999865
No 243
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.4e-29 Score=217.11 Aligned_cols=144 Identities=26% Similarity=0.396 Sum_probs=115.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-----KMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.+||+||++.+++. |++||+.++...+ ...+..+ .+.+.++.+ ++.. .++++.+||||||||++|||
T Consensus 76 ~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~ 152 (229)
T cd03254 76 RSMIGVVLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIAR 152 (229)
T ss_pred hhhEEEecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHH
Confidence 3569999999988886 9999998753211 1222111 122333333 4443 45668999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..||++++|++|+++..++.+++...
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999999999999985 58999999999999867999999999999998888777643
No 244
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=4.2e-29 Score=215.10 Aligned_cols=130 Identities=25% Similarity=0.301 Sum_probs=115.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.+||+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~ 169 (224)
T TIGR02324 90 KTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYP 169 (224)
T ss_pred cceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999988655445544555677888999999974 377899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLM 138 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl 138 (249)
++||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||+++.+
T Consensus 170 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 170 ILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999987779999999999999975 9999876
No 245
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=2.5e-29 Score=217.18 Aligned_cols=140 Identities=24% Similarity=0.314 Sum_probs=118.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.+||+||++.+|+. |++||+.+....++... ..+++.++++.+++. . .++++.+||||||||++|||||+++|
T Consensus 80 ~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 80 RQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred HhccEEEecccccccc-cHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 3579999999998875 99999988654443221 235677889999995 3 58889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEe-CCEEEEecChh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMR-KGVLLAEKSPE 150 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~-~G~iv~~g~~~ 150 (249)
+++||||||+|||+.++..+.+.|+++.++ |.|||++||+++++..||++++|+ ++..+++|+++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998764 899999999999997799999995 55555777653
No 246
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=1.7e-29 Score=245.44 Aligned_cols=141 Identities=28% Similarity=0.440 Sum_probs=120.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CC------C----CcCcCChHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DH------R----TCSTLSGGQVRRVS 76 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~------~----~~~~LSgGqkQRv~ 76 (249)
.+.||||||++.+|+. |++||+.++.. ..+. +.+.++++..++++ .+ . ...+||||||||++
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP--NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC--ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence 4569999999999986 99999998642 2333 34555666666643 12 1 34679999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
||||++++|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++|+.++.
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 9999999999999999999999999999999999975 589999999999999889999999999999999999998764
No 247
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.96 E-value=1.6e-29 Score=250.86 Aligned_cols=142 Identities=27% Similarity=0.432 Sum_probs=115.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL-----QEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.||||||++.+|+. |++|||.++.. ..+.++..+.++.+ ++.+ |++. ....-.+||||||||++|||
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHH
Confidence 5679999999999986 99999987532 23444443333221 1111 2211 12223679999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|++||||||||+||+.+++.+.+.|++ .++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 629 all~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999999999999999999976 47999999999999989999999999999999999999875
No 248
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=244.57 Aligned_cols=142 Identities=24% Similarity=0.374 Sum_probs=116.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCC-CCCC----cCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD-------LPP-DHRT----CSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~-~~~~----~~~LSgGqkQRv 75 (249)
.+.|||+||++.+|+. |++|||.++.. ...+.++.++ +++..+ +++ .+.. -.+||||||||+
T Consensus 416 ~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i~~----al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi 489 (582)
T PRK11176 416 RNQVALVSQNVHLFND-TIANNIAYART-EQYSREQIEE----AARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489 (582)
T ss_pred HhhceEEccCceeecc-hHHHHHhcCCC-CCCCHHHHHH----HHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence 4679999999999986 99999998632 1134444333 333333 222 1222 267999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|++||||||||+||+.++..+.+.|.++. +++|+|++||+++.++.||+|++|++|++++.|+++++.++
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999974 57999999999999988999999999999999999999876
Q ss_pred c
Q psy4634 156 Y 156 (249)
Q Consensus 156 ~ 156 (249)
.
T Consensus 569 ~ 569 (582)
T PRK11176 569 N 569 (582)
T ss_pred C
Confidence 3
No 249
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=1.4e-29 Score=266.71 Aligned_cols=144 Identities=28% Similarity=0.449 Sum_probs=118.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HH-HcCCCC-CCCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QE-VLDLPP-DHRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~-~~~l~~-~~~~~----~~LSgGqkQRv~iAr 79 (249)
.+.||||||+|.||+. |++|||.|+.. ..+.++.++.++.+ -+ ...||+ .+..+ .+||||||||++|||
T Consensus 1295 R~~i~~V~Qep~LF~g-TIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIAR 1371 (1466)
T PTZ00265 1295 RNLFSIVSQEPMLFNM-SIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIAR 1371 (1466)
T ss_pred HhhccEeCCCCccccc-cHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHH
Confidence 4679999999999986 99999999743 34555554444321 11 123444 23333 579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecChhHHhccCEEEEEeC----CEEE-EecChhHHH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIEEARQANVVGLMRK----GVLL-AEKSPEELI 153 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~TiiivtH~l~~~~~~Dri~vl~~----G~iv-~~g~~~el~ 153 (249)
||+++|+|||||||||+||+.+++.+++.|.++. .+|+|+|++||+++.++.||+|++|++ |+++ +.|+++|++
T Consensus 1372 ALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1372 ALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999999999975 358999999999999999999999999 9955 799999998
Q ss_pred H
Q psy4634 154 A 154 (249)
Q Consensus 154 ~ 154 (249)
+
T Consensus 1452 ~ 1452 (1466)
T PTZ00265 1452 S 1452 (1466)
T ss_pred h
Confidence 6
No 250
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.1e-29 Score=221.22 Aligned_cols=145 Identities=21% Similarity=0.368 Sum_probs=120.7
Q ss_pred CcEEEEeCCCCCC--CCCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALF--DEFTIAETFQFYAS----LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~--~~lTv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.+||+||++.++ ...++.+|+.++.. ....+....++++.++++.+++.. .++++++||||||||++|||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 4699999998652 23478888865321 111122334556778899999975 6888999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+.+|++|||||||+|||+.+++.+.+.|++++++|+|||++||+++++.. ||+++++ +|+++..|+++++..
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 99999999999999999999999999999987779999999999999965 9999877 899999999988753
No 251
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.3e-29 Score=215.95 Aligned_cols=143 Identities=28% Similarity=0.428 Sum_probs=116.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-----KMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.+||+||++.+++ .|+.||+.++.. ..+..+... .+.+.++.+ ++.. .++++.+||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~a 151 (236)
T cd03253 75 RAIGVVPQDTVLFN-DTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARA 151 (236)
T ss_pred hhEEEECCCChhhc-chHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 46999999999886 599999987532 122222221 122333333 3333 456689999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+++|+++||||||+|||+.++..+.+.|.++++ |+|||++||+++++..||++++|++|+++..|+.+++...
T Consensus 152 L~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 9999999999999999999999999999999876 9999999999999967999999999999999998887653
No 252
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.96 E-value=2.7e-29 Score=218.19 Aligned_cols=143 Identities=31% Similarity=0.497 Sum_probs=116.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAK-----MKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.+||+||++.+++ .|++||+.++...+ ..++.... +.++++.+ ++.. .++++.+||||||||++||||
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~a 153 (238)
T cd03249 77 SQIGLVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARA 153 (238)
T ss_pred hhEEEECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHH
Confidence 46999999998887 59999998753321 12221111 22223333 4443 467789999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+.+|+++||||||+|||+.+++.+++.|++++ +|+|||++||+++++..||++++|++|+++..++.+++...
T Consensus 154 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999999986 79999999999999877999999999999999998887654
No 253
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=6.5e-29 Score=239.87 Aligned_cols=144 Identities=27% Similarity=0.401 Sum_probs=119.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKM-----KELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.+||+||++.+|+. |++||+.++.. ..+.++..+.+ ++.++.+ |++. ..+...+||||||||++|||
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 4579999999999987 99999986432 23444433322 2344444 3432 34556899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|++++|++|||||||+|||+.+++.+.+.|+++..+|+|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999998656899999999999887799999999999999999998864
No 254
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.96 E-value=5.5e-29 Score=247.34 Aligned_cols=139 Identities=24% Similarity=0.417 Sum_probs=113.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-----CCCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-----DHRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-----~~~~~~~LSgGqkQRv 75 (249)
.++|+||||+|.+|+. |++|||.++.. ..++++.. ++++..++ ++ ....-.+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~~e~i~----~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--DTPDEEIM----AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--CCCHHHHH----HHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 3579999999999986 99999998643 23444333 33443332 21 1223368999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+||||++++|+++|||||||+||+.+++.+.+ .. ..+++|+|++||+++.+..||+|++|++|+|++.|+++|+.++
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999999999998 22 2358999999999999988999999999999999999999875
Q ss_pred c
Q psy4634 156 Y 156 (249)
Q Consensus 156 ~ 156 (249)
.
T Consensus 704 ~ 704 (711)
T TIGR00958 704 Q 704 (711)
T ss_pred C
Confidence 3
No 255
>KOG0057|consensus
Probab=99.96 E-value=2.8e-29 Score=235.76 Aligned_cols=140 Identities=26% Similarity=0.391 Sum_probs=119.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-C-----------CCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-D-----------HRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-----------~~~~~~LSgGqkQRv 75 (249)
.+.||||||+..||++ ||..||.|+.. ..+.+ ++.+.+++.++++ . ..+-..|||||||||
T Consensus 424 R~~Ig~VPQd~~LFnd-TIl~NI~YGn~--sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFND-TILYNIKYGNP--SASDE----EVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hhheeEeCCcccccch-hHHHHhhcCCC--CcCHH----HHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 5679999999999998 99999998754 33443 3444455555543 1 122368999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++|||++.+|+|+++|||||+||.++++++.+.+.+ ...|+|+|++.|+++.+..||+|+++++|++.+.|+++|+...
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~ 575 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP 575 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh
Confidence 999999999999999999999999999999999999 4568999999999999999999999999999999999999873
No 256
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.96 E-value=4.2e-29 Score=247.38 Aligned_cols=144 Identities=27% Similarity=0.433 Sum_probs=117.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HHHc-CCCC-----CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QEVL-DLPP-----DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~~~-~l~~-----~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.||||||++.+|+. |++|||.++.. ..+.++..+.++.+ .+.+ .++. ....-.+||||||||++|||
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 4679999999999997 99999997633 23444444333221 1111 1222 12233689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|+++|||||||+||+.+++.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+++|+.+.
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 9999999999999999999999999999999975 47999999999999988999999999999999999998764
No 257
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=4.6e-29 Score=238.02 Aligned_cols=138 Identities=22% Similarity=0.312 Sum_probs=120.3
Q ss_pred CcEEEEeCCCCC--C-C-----CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 9 TYIGFMPQETAL--F-D-----EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 9 ~~Ig~v~Q~~~l--~-~-----~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
+.+||++|++.+ + . .+|++||+.+. .+.+++++++++.+++++ .++++++||||||||++||+
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHH
Confidence 459999998753 1 1 46888877532 123466788999999976 68999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
||+++|++|||||||+|||+.+++.+.+.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999998779999999999999976 99999999999999999888764
No 258
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-29 Score=213.05 Aligned_cols=148 Identities=28% Similarity=0.380 Sum_probs=130.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc-
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSE--EFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH- 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~- 83 (249)
++.-+++||+..+-..+||+|-+.++...++...+ +..+.++.+++..++.. ..|.+.+|||||||||.+||.|++
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 56788999998875557999999998776643333 55666888999999986 688899999999999999999995
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 -----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 -----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
++++|+||||||+||+..+...+++.++++++|..|+.+-||++.+.. ||||++|++||+++.|+|+++.+.
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH
Confidence 556999999999999999999999999999999999999999999865 999999999999999999998865
No 259
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=3.5e-29 Score=214.86 Aligned_cols=131 Identities=27% Similarity=0.429 Sum_probs=108.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCC-----------CcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHR-----------TCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~-----------~~~~LSgGqkQRv~ 76 (249)
+.++|+||++.+++ .|+.||+.++... .. .+++.++++.+++.+ .++ .+.+||||||||++
T Consensus 78 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~ 150 (220)
T cd03245 78 RNIGYVPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA 150 (220)
T ss_pred hhEEEeCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH
Confidence 46999999998887 5999999864321 11 233455667777643 233 34799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEec
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEK 147 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g 147 (249)
||||++.+|++|||||||+|||+.++..+++.|++++++ +|||++||++++++.||++++|++|+++..|
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999998664 8999999999987669999999999997653
No 260
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.96 E-value=3.2e-28 Score=212.53 Aligned_cols=144 Identities=23% Similarity=0.272 Sum_probs=118.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH-h--cC----CCHHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS-L--YR----ISSEEFRAKMKELQEVLDLP-P-DHRTCS-TLSGGQVRRVSIA 78 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~--~~----~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQRv~iA 78 (249)
..++|++|++.+++.+|..+++.+... . +. ....+..++++++++.++++ . .++++. +||||||||++||
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 469999999988888787776653221 1 11 11223456677888999995 3 466664 8999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--cCEEEEEeCCEEEEecChhHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ--ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~--~Dri~vl~~G~iv~~g~~~el 152 (249)
|||+++|++|||||||+|||+.++..+.+.|+++++.|+|||++||+++++.. ||++++|++|+++..|+++.+
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999999987778999999999999964 899999999999999987754
No 261
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.96 E-value=2.3e-28 Score=238.14 Aligned_cols=145 Identities=25% Similarity=0.336 Sum_probs=118.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE-----LQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.+||+||++.+|+. |++||+.++.. ..+.++..+.++. .+..+ |++. ..+...+||||||||++|||
T Consensus 408 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 408 RKSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred HhheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 4579999999999985 99999998633 2344444443332 12211 3332 24456789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
||+++|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.++.
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 9999999999999999999999999999999874 589999999999999889999999999999999999998753
No 262
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-28 Score=232.40 Aligned_cols=142 Identities=16% Similarity=0.275 Sum_probs=125.5
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeC
Q psy4634 14 MPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDE 92 (249)
Q Consensus 14 v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDE 92 (249)
+.+.+.+++.+|++||+.+....++.+.++..+++.++++.+++.+ .++++.+||||||||++|||||+.+|++|||||
T Consensus 90 i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE 169 (549)
T PRK13545 90 IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE 169 (549)
T ss_pred EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3445566777899999988665555555666677888999999976 688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 93 PTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 93 PtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++...
T Consensus 170 PTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 170 ALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999987779999999999999976 999999999999999999988764
No 263
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.96 E-value=7.8e-29 Score=245.99 Aligned_cols=145 Identities=28% Similarity=0.465 Sum_probs=116.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HHHc-CCCC-----CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QEVL-DLPP-----DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~~~-~l~~-----~~~~~~~LSgGqkQRv~iAr 79 (249)
.++||||||++.+|+. |++|||.++.. ...+.++..+.++.+ .+.+ .++. ....-.+||||||||++|||
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 4579999999999987 99999998632 133444443333221 1111 1222 12234689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|++++|++||||||||+||+.+++.+.+.|+++ +|+|+|++||+++.++.||+|++|++|++++.|+++++.++.
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 999999999999999999999999999999985 479999999999999889999999999999999999998753
No 264
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.96 E-value=1.1e-28 Score=244.37 Aligned_cols=145 Identities=26% Similarity=0.400 Sum_probs=118.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMK-----ELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.||||||++.+|+. |++||+.++.. ..+.++..+.++ +.++.+ |++. ......+||||||||++|||
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 4569999999999986 99999987532 234444443332 222222 3332 23345789999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
||+++|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.++.
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC
Confidence 9999999999999999999999999999999974 589999999999999889999999999999999999998763
No 265
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.96 E-value=1.1e-28 Score=207.57 Aligned_cols=121 Identities=29% Similarity=0.486 Sum_probs=105.7
Q ss_pred CCcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+.+||+||++. +++ .|++||+.+....++.+.++..+++.++++.+++++ .++++.+||||||||++|||||+++
T Consensus 67 ~~~i~~~~q~~~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 145 (190)
T TIGR01166 67 RQRVGLVFQDPDDQLFA-ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMR 145 (190)
T ss_pred HhhEEEEecChhhcccc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 346999999983 454 699999998755445555566677889999999976 6888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
|+++||||||+|||+.+++.+.+.|++++++|+|||++||+++++
T Consensus 146 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 146 PDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 999999999999999999999999999877799999999998763
No 266
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=1.8e-28 Score=215.70 Aligned_cols=138 Identities=20% Similarity=0.341 Sum_probs=118.2
Q ss_pred CcEEEEeCCCCCCCCC--CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 9 TYIGFMPQETALFDEF--TIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~l--Tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
..+||+||++.+++.+ |+.+++.+.. +.. .+++.++++.+++.+ .++++.+||||||||++|||||+++|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4699999999887653 7777765321 122 245678899999976 68889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+++||||||+|||+.++..+++.|+++.++ |+|||++||+++++.. ||++++|++ +++..|+++++..
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 999999999999999999999999998766 8999999999999965 999999965 7889999988764
No 267
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=3.4e-28 Score=239.47 Aligned_cols=145 Identities=30% Similarity=0.379 Sum_probs=132.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.+||+||++.+|+.+|+.||+.+.....+.+..+.++++.++++.+++.+ .++++++||+|||||++|||||+++|++
T Consensus 86 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~l 165 (648)
T PRK10535 86 EHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQV 165 (648)
T ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999998665545555666778889999999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHH
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~ 153 (249)
|||||||+|||+.+++.+.+.|++++++|+|+|++||+++.+..||++++|++|+++++|++++..
T Consensus 166 LllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 166 ILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999877799999999999988779999999999999999988775
No 268
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.6e-28 Score=208.46 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=114.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|++|++.+++.+|++||+.+....++.. ..+.+.++++.+++.. .++++.+||||||||++||||++++|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 46999999999998899999998876554422 2345678889999975 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeC
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRK 140 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~ 140 (249)
+||||||+|||+.+++.+.+.|++++++|.|+|++||+++++.. ||++++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999987789999999999999976 999999864
No 269
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=3.7e-28 Score=235.85 Aligned_cols=141 Identities=25% Similarity=0.404 Sum_probs=117.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCC-----CCCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD-------LPP-----DHRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~-----~~~~~~~LSgGqkQRv 75 (249)
.+.+||+||++.+|+. |++||+.++.. ..+.++..+ +++..+ +++ ......+||||||||+
T Consensus 388 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~----~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 388 RSRLAVVSQTPFLFSD-TVANNIALGRP--DATQQEIEH----VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460 (569)
T ss_pred HhheEEEccCCeeccc-cHHHHHhcCCC--CCCHHHHHH----HHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 3579999999999986 99999987632 233433333 333322 222 1334578999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+||||++++|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 539 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ 539 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999999999999999999999999974 58999999999999988999999999999999999999875
Q ss_pred c
Q psy4634 156 Y 156 (249)
Q Consensus 156 ~ 156 (249)
.
T Consensus 540 ~ 540 (569)
T PRK10789 540 S 540 (569)
T ss_pred C
Confidence 3
No 270
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=3.8e-28 Score=213.06 Aligned_cols=140 Identities=21% Similarity=0.258 Sum_probs=116.5
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
.|+|+||++..+..+||.||+.+....... . .....++++.++++. .++++++||||||||++|||||+.+|+++
T Consensus 62 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 62 TVSYKPQYIKADYEGTVRDLLSSITKDFYT-H---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred eEEEecccccCCCCCCHHHHHHHHhhhccc-c---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 799999999877778999999765432221 1 223567888999976 68889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEE--EecChhHHH
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLL--AEKSPEELI 153 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv--~~g~~~el~ 153 (249)
||||||++||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|+++..+ ..+++.++.
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999998764 8999999999999976 9999999765433 335665554
No 271
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.96 E-value=1.3e-28 Score=238.42 Aligned_cols=141 Identities=26% Similarity=0.409 Sum_probs=116.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-CCCC----cCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-DHRT----CSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~----~~~LSgGqkQRv 75 (249)
.++++|+||+|.+|+. |++|||.++.. ...+.++ +.++++.+++ +. .+.. -..||||||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~----i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 405 RRQVALVSQDVVLFND-TIANNIAYGRT-EQADRAE----IERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred HhhceEEccCcccccc-cHHHHHhcCCC-CCCCHHH----HHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 4569999999999987 99999997631 1233333 3344444433 21 1222 357999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+||||++++|++++||||||+||+.+++.+.+.|+++. +++|+|++||+.+.+..||+|++|++|++++.|+++++.++
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999999999999974 57999999999999888999999999999999999999865
No 272
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.2e-28 Score=232.39 Aligned_cols=142 Identities=19% Similarity=0.351 Sum_probs=119.2
Q ss_pred CcEEEEeCCC---CCCCCCCHHHHH-----HHHHHhcCC-CHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHH
Q psy4634 9 TYIGFMPQET---ALFDEFTIAETF-----QFYASLYRI-SSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSI 77 (249)
Q Consensus 9 ~~Ig~v~Q~~---~l~~~lTv~enl-----~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~i 77 (249)
+.+||+||++ .+|+.+|+.+|. .+....++. +....++++.++++.+++. . .++++++||||||||++|
T Consensus 323 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 402 (491)
T PRK10982 323 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVII 402 (491)
T ss_pred CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHH
Confidence 3499999985 478888887773 322221221 2334456778889999995 4 688999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChh
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPE 150 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~ 150 (249)
|||++.+|++|||||||+|||+.++..+++.|+++.++|.|||++|||++++.. |||+++|++|+++..++.+
T Consensus 403 a~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 403 GRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999998789999999999999976 9999999999999877654
No 273
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=4e-28 Score=206.65 Aligned_cols=128 Identities=23% Similarity=0.255 Sum_probs=112.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|++|++.+++.+|+.||+.++...++. +..++++++++.+++.. .++++++||||||||++|||||+++|+
T Consensus 73 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 73 HQDLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred hhheEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 35699999999999989999999987655432 23456788999999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLM 138 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl 138 (249)
++||||||+|||+.++..++++|++++++|.|+|++||+++++.. .+|++.+
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999987778999999999999976 5677666
No 274
>KOG0059|consensus
Probab=99.96 E-value=1.2e-28 Score=249.58 Aligned_cols=150 Identities=36% Similarity=0.668 Sum_probs=143.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||+..+++.+|.+|++.++++++|+++.+..+.++.+++.++|.+ .+++++.+|||+|+|+++|.|++.+|+
T Consensus 639 ~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~ 718 (885)
T KOG0059|consen 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS 718 (885)
T ss_pred hhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC
Confidence 4569999999999999999999999999999999999999999999999975 899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+++|||||+|+||.+|+.+|+++.+++++|+.+|++||.++|++. |||+.+|.+|++..-|+++++..+.+
T Consensus 719 vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 719 VILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 999999999999999999999999998888899999999999987 99999999999999999999987765
No 275
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=5.8e-28 Score=205.82 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=107.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.|||+||++.+++. |++||+.+.. ..+. +.+.+.++ .++++.+||||||||++||||++.+|++
T Consensus 81 ~~~i~~v~q~~~~~~~-tv~~~l~~~~---~~~~----~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~l 146 (207)
T cd03369 81 RSSLTIIPQDPTLFSG-TIRSNLDPFD---EYSD----EEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRV 146 (207)
T ss_pred HhhEEEEecCCcccCc-cHHHHhcccC---CCCH----HHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 3579999999988875 9999997532 1222 12333333 2567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecCh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSP 149 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~ 149 (249)
+||||||+|||+.++..+++.|+++. +|+|+|++||+++++..||++++|++|+++..|++
T Consensus 147 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 147 LVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999975 58999999999999866999999999999887753
No 276
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=2.8e-28 Score=210.24 Aligned_cols=131 Identities=26% Similarity=0.364 Sum_probs=109.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEF-----RAKMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.++|+||++.+|+ .|++||+.++... ....+. +..+.++++.+ ++.. .++++.+||||||||++||||
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 56999999998887 5999999875331 111111 12245677777 6765 577899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEE
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVL 143 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~i 143 (249)
|+++|+++||||||+|||+.++..+.+.|+++++ ++|+|++||+++++..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999865 6899999999999966999999999974
No 277
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=7e-28 Score=203.95 Aligned_cols=112 Identities=39% Similarity=0.579 Sum_probs=100.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.++|+||++.+++.+|++||+.+....+ +||||||||++|||||+.+|++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------------------------~LS~G~~qrv~laral~~~p~i 132 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR----------------------------GLSGGERKRVSIALELVSNPSL 132 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc----------------------------cCCHHHHHHHHHHHHHHcCCCE
Confidence 456999999999998899999998653210 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh-HHhc-cCEEEEEeCCEEEEec
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE-EARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~-~~~~-~Dri~vl~~G~iv~~g 147 (249)
+||||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.. ||++++|++|+++..|
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999998777999999999997 6765 9999999999997653
No 278
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.6e-28 Score=228.50 Aligned_cols=141 Identities=26% Similarity=0.375 Sum_probs=130.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR----ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
...|+.|+|+.+|.+++||.||+.++....+ +.++..++++.++++.+++.. .+.++++||.||||.|+||||+.
T Consensus 82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh
Confidence 3569999999999999999999988766432 577889999999999999853 67889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
.+++++|||||||+|+....+.+++.+++++++|.++|++||+|+|+.. ||||.||+||+.+...+
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999976 99999999999998877
No 279
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=3.1e-28 Score=209.14 Aligned_cols=132 Identities=21% Similarity=0.323 Sum_probs=109.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-----------P-DHRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQRv 75 (249)
.+.+||+||++.+++ .|++||+.+... ... +++.+.++.+++. . .++++.+||+|||||+
T Consensus 77 ~~~i~~~~q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~ 148 (221)
T cd03244 77 RSRISIIPQDPVLFS-GTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLL 148 (221)
T ss_pred hhhEEEECCCCcccc-chHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHH
Confidence 457999999999887 499999975422 222 2233334444432 2 2467899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecC
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~ 148 (249)
+|||||+++|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++..||++++|++|++++.|+
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999999999999999854 689999999999997799999999999988765
No 280
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.95 E-value=9e-28 Score=232.87 Aligned_cols=139 Identities=27% Similarity=0.438 Sum_probs=115.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------CC-CCCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-----------PP-DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~-~~~~~~~LSgGqkQRv~ 76 (249)
+.+||+||++.+|+. |++||+.++.. ..+.++ +.++++..++ +. .......||||||||++
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~~~----~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGRP--DATDEE----VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCCC--CCCHHH----HHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 579999999999987 99999987532 223333 3333443332 21 12334679999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||||++++|+++|||||||+||+.+++.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 9999999999999999999999999999999999974 58999999999999888999999999999999999998765
No 281
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.6e-28 Score=203.32 Aligned_cols=112 Identities=30% Similarity=0.449 Sum_probs=100.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.++|++|++.+++.+|++||+.+.... + +||||||||++|||||+.+|++
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------------~------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL----------------R------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH----------------h------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 35799999999999989999999875321 0 8999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH-Hh-ccCEEEEEeC-CEEEEec
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-AR-QANVVGLMRK-GVLLAEK 147 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~-~~-~~Dri~vl~~-G~iv~~g 147 (249)
+||||||+|||+.++..+++.|++++++|+|+|++||++++ +. .||++++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999987779999999999984 65 4999999999 9998754
No 282
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-28 Score=228.93 Aligned_cols=140 Identities=28% Similarity=0.473 Sum_probs=119.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CC----------CCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DH----------RTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~----------~~~~~LSgGqkQRv~ 76 (249)
+.|++++|.+.+|.+ |+++|+.+... +.++++ +.++++.+||.+ .+ ..-..||||||||++
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~~--~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLANP--DASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcCC--CCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 379999999999998 99999997644 344444 444556666542 12 223689999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|||+|.+|.+++||||||.||||.+++++++.|.+- .+|+|+|++||++..++.||||++|++|+++++|++.++..+.
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~-~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH-AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH-hcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccc
Confidence 999999999999999999999999999999999984 4699999999999999999999999999999999999998753
No 283
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.95 E-value=8.1e-28 Score=204.41 Aligned_cols=125 Identities=23% Similarity=0.300 Sum_probs=110.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|+||++.+++.+|++||+.+....+ ..++++++++.+++.. .++++.+||||||||++|||||+++|+
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 72 ARGLLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred hhheEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 357999999999988899999998753211 2456778899999975 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLM 138 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl 138 (249)
++||||||+|||+.+++.+.+.|++++++|.|+|++||+..+... |++++.+
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999999987779999999999988765 9999876
No 284
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=4e-28 Score=256.72 Aligned_cols=140 Identities=19% Similarity=0.309 Sum_probs=117.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-C----CCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-D----HRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~----~~~~~~LSgGqkQRv 75 (249)
.++|+||||+|.+|+. |++|||.++. ..++++..+ +++..++ +. . ...-.+||||||||+
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~----al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---EHNDADLWE----ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC---CCCHHHHHH----HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 4679999999999997 9999998652 234444433 3443333 21 1 223368999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|+|||||||||+||+.+.+.+++.|++.. +++|+|+++|+++.+..||||++|++|+|++.|+|+|+.++
T Consensus 1381 aLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1381 SLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999863 58999999999999999999999999999999999999875
Q ss_pred c
Q psy4634 156 Y 156 (249)
Q Consensus 156 ~ 156 (249)
.
T Consensus 1460 ~ 1460 (1495)
T PLN03232 1460 D 1460 (1495)
T ss_pred C
Confidence 3
No 285
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.5e-29 Score=209.16 Aligned_cols=148 Identities=28% Similarity=0.406 Sum_probs=135.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY--RISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
+++++.+-|+...-..+||+|-+.|+.-.| |-..++.+..++++++.++|.. .+|+..+||||||||..||..++++
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 566788889998888999999999987655 3345677888999999999987 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
.+.++||||.++||......+++.|++++++ |+||++|-||++++.. +|.|+-|++|+++.+|+++|+...
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999999999999999999988 9999999999999975 999999999999999999999864
No 286
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.7e-27 Score=202.85 Aligned_cols=118 Identities=24% Similarity=0.307 Sum_probs=101.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.++|+||++.+++.+||+||+.+..... .++++.+||||||||++|||||+++|++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 457999999999999899999998754311 4567889999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE-ecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIIT-THYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~Tiiiv-tH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
+||||||+|||+.+++.+++.|+++.++ +.|++++ +|+.+++.. ||++++|++|+++..|
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999998765 6676555 566788865 9999999999998653
No 287
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=1.7e-27 Score=230.70 Aligned_cols=143 Identities=25% Similarity=0.355 Sum_probs=120.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH-hc-------------CCCH----------------------HHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS-LY-------------RISS----------------------EEFRAKMKELQ 52 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~~-------------~~~~----------------------~~~~~~~~~~l 52 (249)
..|||+||++.+++.+|+.||+.++.. ++ ..+. .+..+++.+++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 569999999999999999999987532 10 1110 01245677889
Q ss_pred HHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-
Q psy4634 53 EVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ- 131 (249)
Q Consensus 53 ~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~- 131 (249)
+.++++..++++++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||++||+++++..
T Consensus 150 ~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~ 226 (556)
T PRK11819 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNV 226 (556)
T ss_pred HhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhh
Confidence 9999965688899999999999999999999999999999999999999999999999862 499999999999976
Q ss_pred cCEEEEEeCCEEE-EecChhHHHH
Q psy4634 132 ANVVGLMRKGVLL-AEKSPEELIA 154 (249)
Q Consensus 132 ~Dri~vl~~G~iv-~~g~~~el~~ 154 (249)
||+|++|++|+++ ..|+.+++..
T Consensus 227 ~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 227 AGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred cCeEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999986 6788776543
No 288
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=9.9e-28 Score=211.23 Aligned_cols=143 Identities=19% Similarity=0.330 Sum_probs=115.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-----KMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.+.+||++|++.+|+. |++||+..... ........ .+.+.++.+ +++. .++...+||||||||++|||
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 4569999999988875 99999864211 11111111 123334444 4543 45667899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|++|||||||+|||+.++..+.+.++++. ++.|+|++||+++++..|||+++|++|+++..|+++++...
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999999999999974 58999999999999977999999999999999999988764
No 289
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=228.28 Aligned_cols=143 Identities=24% Similarity=0.333 Sum_probs=119.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHH-h----------cCCC---------------------HHHHHHHHHHHHHHcC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYAS-L----------YRIS---------------------SEEFRAKMKELQEVLD 56 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~~~~ 56 (249)
..|||++|++.+++.+|++||+.++.. . ...+ ..+.++++.++++.++
T Consensus 64 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 143 (530)
T PRK15064 64 ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143 (530)
T ss_pred CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Confidence 469999999999999999999986421 0 0000 0122456788999999
Q ss_pred CCC-C-CCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cC
Q psy4634 57 LPP-D-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-AN 133 (249)
Q Consensus 57 l~~-~-~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~D 133 (249)
++. . ++++++||||||||++|||||+.+|++|||||||+|||+.++..+.+.|.+ .|.|||+|||+++++.. ||
T Consensus 144 l~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 144 IPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred CChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcc
Confidence 974 3 567899999999999999999999999999999999999999999999864 48999999999999976 99
Q ss_pred EEEEEeCCEEE-EecChhHHHH
Q psy4634 134 VVGLMRKGVLL-AEKSPEELIA 154 (249)
Q Consensus 134 ri~vl~~G~iv-~~g~~~el~~ 154 (249)
+|++|++|+++ ..|+++++..
T Consensus 221 ~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 221 HMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred eEEEEeCCEEEEecCCHHHHHH
Confidence 99999999994 7888887753
No 290
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=3.7e-27 Score=247.86 Aligned_cols=142 Identities=27% Similarity=0.382 Sum_probs=125.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCC-CCCCc-----CcCChHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY---RISSEEFRAKMKELQEVLDLPP-DHRTC-----STLSGGQVRRVSIAV 79 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkQRv~iAr 79 (249)
+.+|||+|++.+++.+||+||+.|.+.++ ..+.++..++++++++.++|.+ .++.+ +.||||||||++||+
T Consensus 953 ~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~ 1032 (1470)
T PLN03140 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAV 1032 (1470)
T ss_pred hheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHH
Confidence 56899999999999999999999987653 2344566677899999999976 56665 689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh-HHh-ccCEEEEEeC-CEEEEecChh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE-EAR-QANVVGLMRK-GVLLAEKSPE 150 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~-~~~-~~Dri~vl~~-G~iv~~g~~~ 150 (249)
+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++. .||++++|++ |+++..|++.
T Consensus 1033 aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1033 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 999999999999999999999999999999999888999999999998 454 4999999996 8999999863
No 291
>PLN03130 ABC transporter C family member; Provisional
Probab=99.95 E-value=1.3e-27 Score=253.86 Aligned_cols=139 Identities=19% Similarity=0.319 Sum_probs=117.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-CC----CCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-DH----RTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~----~~~~~LSgGqkQRv 75 (249)
.++||+|||+|.+|+. |++|||.++. ..++++..+. ++..++ +. .+ ..-.+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~~tdeei~~A----l~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---EHNDADLWES----LERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---CCCHHHHHHH----HHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 4679999999999997 9999998753 2344444433 333332 22 12 22358999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|+|||||||||+||+.+.+.+++.|++.. +|+|+|+++|+++.+..||||++|++|+|++.|+|+|+.++
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999964 58999999999999999999999999999999999999875
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=1.6e-27 Score=199.63 Aligned_cols=105 Identities=24% Similarity=0.482 Sum_probs=95.8
Q ss_pred CCcEEEEeCCC---CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIGFMPQET---ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig~v~Q~~---~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+.++|+||++ .+++.+|++||+.++.. ||||||||++|||||+++
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~ 122 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARD 122 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccC
Confidence 35799999985 57888899999987531 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEE
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~i 143 (249)
|+++||||||+|||+.+++.+.+.|++++++|+|+|++||+++++.. ||++++|++|++
T Consensus 123 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 123 PRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987678999999999999976 999999999974
No 293
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.9e-27 Score=197.66 Aligned_cols=101 Identities=41% Similarity=0.840 Sum_probs=95.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.++|+||++.+++.+|+.||+. ||||||||++|||||+.+|++
T Consensus 72 ~~~i~~~~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 72 KRRIGYLPEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred hccEEEEecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 357999999999999899999974 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~i 143 (249)
+||||||+|||+.++..+.+.|++++++|.|+|++||+.+++.. ||++++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999997779999999999999975 999999999974
No 294
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=4.5e-27 Score=227.61 Aligned_cols=143 Identities=26% Similarity=0.328 Sum_probs=118.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh-c-------------CCCHHH----------------------HHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL-Y-------------RISSEE----------------------FRAKMKELQ 52 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~-~-------------~~~~~~----------------------~~~~~~~~l 52 (249)
..|||+||++.+++.+|+.||+.++... + ..+..+ ...++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 5699999999999999999999875321 0 111111 124566778
Q ss_pred HHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-
Q psy4634 53 EVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ- 131 (249)
Q Consensus 53 ~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~- 131 (249)
+.++++..++++++||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+|||+++.+..
T Consensus 148 ~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~ 224 (552)
T TIGR03719 148 DALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNV 224 (552)
T ss_pred hhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhh
Confidence 888886567889999999999999999999999999999999999999999999999886 3599999999999976
Q ss_pred cCEEEEEeCCEEE-EecChhHHHH
Q psy4634 132 ANVVGLMRKGVLL-AEKSPEELIA 154 (249)
Q Consensus 132 ~Dri~vl~~G~iv-~~g~~~el~~ 154 (249)
||++++|++|+++ ..|+.+++..
T Consensus 225 ~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 225 AGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred cCeEEEEECCEEEEecCCHHHHHH
Confidence 9999999999976 6788877554
No 295
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=1.5e-27 Score=252.67 Aligned_cols=139 Identities=23% Similarity=0.340 Sum_probs=116.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-CCCCc----CcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-DHRTC----STLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~~----~~LSgGqkQRv 75 (249)
.++|++|||+|.+|+. |++|||..+. ..++++.. ++++..++ +. .+..+ .+||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~----~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QYSDEEVW----WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CCCHHHHH----HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 4679999999999998 9999997432 34454443 33444333 22 23333 57999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|+|||||||||+||+.+.+.+++.|++.. +++|+|+++|+++.+..||||++|++|+|++.|+|+++.++
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999853 57999999999999999999999999999999999999875
No 296
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=2.5e-27 Score=230.86 Aligned_cols=133 Identities=22% Similarity=0.241 Sum_probs=116.5
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
.+||+||++.+++.+||+||+.++...++ . ...+.++++.+++.. .++++.+|||||||||+|||||+++|++|
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~--~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDDLG--S---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhhcC--h---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 58999999988888999999987533222 1 224678899999976 68999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecC
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
||||||+|||+.++..+.+.|++++++ |+|+|++|||++++.. |||+++|+ |++...|+
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999999765 8999999999999976 99999996 47777775
No 297
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.95 E-value=1.7e-27 Score=198.00 Aligned_cols=99 Identities=32% Similarity=0.533 Sum_probs=92.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.++|++|++.+++. |++||+ ||||||||++|||||+++|++
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 3579999999988875 999987 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVL 143 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~i 143 (249)
+||||||+|||+.++..+.+.|++++++|+|+|++||+++++..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999987779999999999998866999999999974
No 298
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=3.2e-27 Score=248.28 Aligned_cols=143 Identities=27% Similarity=0.402 Sum_probs=127.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCC-CCCCcC----cCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR---ISSEEFRAKMKELQEVLDLPP-DHRTCS----TLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~----~LSgGqkQRv~iAr 79 (249)
.+.+|||+|++.+++.+||+||+.|.+.++. .++++..++++++++.+++.+ .++.++ +||||||||++||+
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 4679999999988899999999999876652 355666788999999999976 677776 79999999999999
Q ss_pred HHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH--hccCEEEEEeCC-EEEEecChh
Q psy4634 80 TLLHTPS-LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA--RQANVVGLMRKG-VLLAEKSPE 150 (249)
Q Consensus 80 AL~~~P~-iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~--~~~Dri~vl~~G-~iv~~g~~~ 150 (249)
+|+.+|+ +|+|||||+|||+.++..+++.|++++++|+|||+++|+++.. ..||++++|++| +++..|++.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 9999997 9999999999999999999999999988899999999999974 359999999997 999999863
No 299
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=4e-27 Score=200.11 Aligned_cols=114 Identities=26% Similarity=0.357 Sum_probs=101.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
..++|+||++.+++..|+.+++ ++...+||||||||++|||||+.+|+++
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~il 126 (200)
T cd03217 77 LGIFLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLA 126 (200)
T ss_pred CcEEEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3599999999999888888766 1123589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh--ccCEEEEEeCCEEEEecChhHHH
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR--QANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~--~~Dri~vl~~G~iv~~g~~~el~ 153 (249)
||||||+|||+.++..+++.|++++++|+|+|++||+++.+. .||++++|++|++++.|+ .++.
T Consensus 127 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~-~~~~ 192 (200)
T cd03217 127 ILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD-KELA 192 (200)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEcc-HHHH
Confidence 999999999999999999999998777899999999999996 599999999999999884 4443
No 300
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=2.5e-27 Score=197.71 Aligned_cols=105 Identities=28% Similarity=0.500 Sum_probs=96.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.++|+||++.+++ .|++||+ +.+||||||||++||||++++|++
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 74 SSLISVLNQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred HhhEEEEccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 356999999998886 5999987 678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEec
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEK 147 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g 147 (249)
|||||||+|||+.+++.+++.|+++. +|.|||++||+++++..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999985 589999999999998779999999999998653
No 301
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=3.8e-27 Score=201.12 Aligned_cols=128 Identities=25% Similarity=0.338 Sum_probs=111.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|++|++.+++.+|+.||+.+....++.. .+++.++++.+++.. .++++++||||||||++||||++++|+
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 456899999988888899999998866544322 234778899999975 578889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
++||||||+|||+.++..+++.|++++++|+|||++||+++++.. |+++-++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999987779999999999999977 88877743
No 302
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=220.69 Aligned_cols=141 Identities=33% Similarity=0.457 Sum_probs=129.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASL---YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+..||+|+|++.|++.+||.|||.++... .....+..+++++++.+.+|++- .+.++.+||-|+||||.|-+||.+
T Consensus 78 ~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred HcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc
Confidence 34699999999999999999999988753 13567788999999999999985 789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecC
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
+|++|||||||+-|-|...+++++.+++++++|+|||++||.++|+.. |||+-||++|+++...+
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999976 99999999999876554
No 303
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-27 Score=226.59 Aligned_cols=139 Identities=19% Similarity=0.271 Sum_probs=118.6
Q ss_pred CcEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
+++||+||++. +++.+|+.||+.+.. ... ..+++++++++.+++. . .++++++||||||||++|||||+.+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 456 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWR---QEG--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK 456 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhc---cCC--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcC
Confidence 56999999974 566789999987532 111 1235677889999994 4 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEE-EecChhHHHHh
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLL-AEKSPEELIAS 155 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv-~~g~~~el~~~ 155 (249)
|++|||||||+|||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|+++ ..|+++++.+.
T Consensus 457 p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 457 PNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999999999999999999886 3599999999999976 9999999999998 77888877654
No 304
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=2.9e-27 Score=207.14 Aligned_cols=118 Identities=30% Similarity=0.414 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-Cc
Q psy4634 41 SEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQ 117 (249)
Q Consensus 41 ~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~ 117 (249)
.++..+++.++++.+|++. .+|++++|||||+||++|||||+.+|+++++|||+|+||...+.++.++|.+++++ |.
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l 161 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL 161 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC
Confidence 5567788999999999974 69999999999999999999999999999999999999999999999999999876 99
Q ss_pred EEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 118 TIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 118 TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
|.+++|||++.++. ||||++|..|+|++.|+.++++.+..+
T Consensus 162 t~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 162 TYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred eEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 99999999999987 999999999999999999999986543
No 305
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=1.2e-26 Score=199.31 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=114.2
Q ss_pred eCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy4634 15 PQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEP 93 (249)
Q Consensus 15 ~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEP 93 (249)
.+++.+++.+|+.||+.+....++.+.++.. ..+.+.++++. .++++++||||||||++|||||+++|+++|||||
T Consensus 55 ~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP 131 (213)
T PRK15177 55 GANSFILPGLTGEENARMMASLYGLDGDEFS---HFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGK 131 (213)
T ss_pred ccccccCCcCcHHHHHHHHHHHcCCCHHHHH---HHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4556788899999999998776665544332 23345667765 6788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 94 TSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 94 tsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
|+++|+.+++.+.+.+.+..+ ++|+|++||+++++.. ||++++|++|+++..++.++..+
T Consensus 132 ~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 132 LYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred CccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 999999999999998866433 4789999999999975 99999999999999999887753
No 306
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.95 E-value=3.6e-27 Score=249.30 Aligned_cols=139 Identities=21% Similarity=0.344 Sum_probs=117.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--------DHRTC----STLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQRv 75 (249)
.++|+||||+|.+|+. |+++||.... ..+++ .+.++++.+++.+ .+..+ ..||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~---~~tde----ei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE---QWSDE----EIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCccc---CCCHH----HHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 4679999999999997 9999997532 23333 4445556555421 12222 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|+|||||||||+||+.+.+.+++.|++.. +++|||++||+++.+..||||++|++|+|++.|+|+++.++
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999999999999999999999853 57999999999999999999999999999999999999863
No 307
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=3.2e-27 Score=248.87 Aligned_cols=132 Identities=24% Similarity=0.381 Sum_probs=106.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh----------cCC---C-----------------------------------
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL----------YRI---S----------------------------------- 40 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~----------~~~---~----------------------------------- 40 (249)
+.||||+|++.+|+. |++|||.++... ++. .
T Consensus 460 ~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 460 SKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred HhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 569999999999985 999999986310 000 0
Q ss_pred ---HHHHHHHHHHHHHHcCCC-------C-----CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Q psy4634 41 ---SEEFRAKMKELQEVLDLP-------P-----DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYF 105 (249)
Q Consensus 41 ---~~~~~~~~~~~l~~~~l~-------~-----~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i 105 (249)
.....+.+.++++.++++ + ..+...+||||||||++|||||+++|++||||||||+||+.++..+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 001123455555555442 2 1345689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCcEEEEEecChhHHhccCEEEEEeCC
Q psy4634 106 WQYLQRMSS-NGQTIIITTHYIEEARQANVVGLMRKG 141 (249)
Q Consensus 106 ~~~L~~l~~-~g~TiiivtH~l~~~~~~Dri~vl~~G 141 (249)
++.|+++.+ +|+|+|++||+++.++.||+|++|++|
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999875 589999999999999889999999986
No 308
>PTZ00243 ABC transporter; Provisional
Probab=99.95 E-value=2.6e-27 Score=250.92 Aligned_cols=139 Identities=24% Similarity=0.366 Sum_probs=116.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-------P-DHRTC----STLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQRv 75 (249)
.+.||||||+|.+|+. |++|||..+. ..++++ +.++++..++. . .+..+ .+||||||||+
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~---~~sdee----I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL---EASSAE----VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc---CCCHHH----HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 5679999999999997 9999997532 334444 44445544442 2 12223 57999999999
Q ss_pred HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 76 SIAVTLLHT-PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 76 ~iArAL~~~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||+++ |+|||||||||+||+.+.+.+++.|++.. +++|+|+++|+++.+..||+|++|++|+|++.|+++|+..
T Consensus 1455 aLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999996 89999999999999999999999999853 4799999999999999999999999999999999999986
Q ss_pred h
Q psy4634 155 S 155 (249)
Q Consensus 155 ~ 155 (249)
+
T Consensus 1534 ~ 1534 (1560)
T PTZ00243 1534 N 1534 (1560)
T ss_pred C
Confidence 4
No 309
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.9e-27 Score=196.03 Aligned_cols=102 Identities=37% Similarity=0.603 Sum_probs=95.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.++|++|++.+++.+|+.||+.+. ||||||||++|||||+++|++
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 45799999999998889999998753 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~ 142 (249)
+||||||+|||+.++..+.+.|++++++ |+|+|++||+++++.. ||++++|++|+
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999877 8999999999999985 99999999985
No 310
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=8.8e-27 Score=197.79 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=108.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||+||++.+++.+|+.||+.+..... .. ...+.++++.+++++ .++++.+||||||||++||||++++|+
T Consensus 73 ~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred HhheEEeccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 357999999999988899999999864321 11 246778899999975 678889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~ 136 (249)
+|||||||+|||+.++..+.+.|++++++|.|+|++||+.+.+..||.-+
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 99999999999999999999999998777999999999999998888644
No 311
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1e-26 Score=205.64 Aligned_cols=133 Identities=25% Similarity=0.389 Sum_probs=117.5
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcC---C
Q psy4634 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHT---P 85 (249)
Q Consensus 11 Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~---P 85 (249)
+.|..++...+..+|+.|++.|+...++ .++..++++.+||.. .++++.+||||||||++||++|+++ |
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p 191 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGK 191 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 5666777766788999999998866432 235667899999975 5888999999999999999999996 7
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecCh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSP 149 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~ 149 (249)
+++||||||+|||+..+..+.+.|+++.++|.|+|++||++++++.||+++.| ++|+|+++|++
T Consensus 192 ~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 192 TLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999999999999999999999987899999999999999789999999 89999999874
No 312
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=1.1e-26 Score=199.41 Aligned_cols=126 Identities=25% Similarity=0.397 Sum_probs=101.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-----------P-DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQRv~ 76 (249)
+.+||++|++.+++ .|++||+.+... ...++ ..++++.+++. . .++++.+||||||||++
T Consensus 79 ~~i~~~~q~~~~~~-~t~~~nl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03290 79 YSVAYAAQKPWLLN-ATVEENITFGSP---FNKQR----YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC 150 (218)
T ss_pred ceEEEEcCCCcccc-ccHHHHHhhcCc---CCHHH----HHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH
Confidence 56999999998885 699999987532 12211 22233333331 1 24568999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCE
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ--YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGV 142 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~ 142 (249)
||||++.+|+++||||||+|||+.++..+++ +++.+++.|.|+|++||+++++..||++++|++|.
T Consensus 151 laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 151 VARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999999999999998 66666656899999999999987799999999884
No 313
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=1.8e-26 Score=242.60 Aligned_cols=146 Identities=21% Similarity=0.261 Sum_probs=125.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-------CCHHHHHHH-HHHHHHHcCCCC-CCCC-----cCcCChHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR-------ISSEEFRAK-MKELQEVLDLPP-DHRT-----CSTLSGGQVR 73 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-------~~~~~~~~~-~~~~l~~~~l~~-~~~~-----~~~LSgGqkQ 73 (249)
.+.++|++|++.+++.+||+||+.|.+.++. .++++..++ .+++++.+||.+ .+.+ ++.|||||||
T Consensus 137 r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerk 216 (1394)
T TIGR00956 137 RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERK 216 (1394)
T ss_pred CceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccch
Confidence 3459999999999999999999999876542 334444334 466899999975 4444 5789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecCh-hHHhc-cCEEEEEeCCEEEEecChh
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYI-EEARQ-ANVVGLMRKGVLLAEKSPE 150 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l-~~~~~-~Dri~vl~~G~iv~~g~~~ 150 (249)
||+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+. +++.. +|++++|++|+++..|+++
T Consensus 217 RvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~ 296 (1394)
T TIGR00956 217 RVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296 (1394)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 99999999997 56755 9999999999999999998
Q ss_pred HHH
Q psy4634 151 ELI 153 (249)
Q Consensus 151 el~ 153 (249)
++.
T Consensus 297 ~~~ 299 (1394)
T TIGR00956 297 KAK 299 (1394)
T ss_pred HHH
Confidence 874
No 314
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=9e-27 Score=198.04 Aligned_cols=129 Identities=23% Similarity=0.345 Sum_probs=100.7
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKM-----KELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
+|||+||++.+++ .|++||+.+.... ..+...+.. .+.++.. ++.. .+++..+||+|||||++|||||
T Consensus 67 ~i~~~~q~~~l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 67 SIAYVSQEPWIQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred EEEEEecCchhcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 4899999999885 5999999875332 222111111 1112222 2222 3566799999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCE
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQ-YLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGV 142 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~ 142 (249)
+.+|+++||||||+|||+.+++.+.+ +++++.++|.|||++||+++++..||++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999999999988 56766556899999999999987799999999985
No 315
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.3e-27 Score=215.41 Aligned_cols=146 Identities=32% Similarity=0.503 Sum_probs=121.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HHHc-CCCC-CCCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QEVL-DLPP-DHRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~~~-~l~~-~~~~~----~~LSgGqkQRv~iAr 79 (249)
.+.||+|||+..||++ |++.|+.|+.. ..+.++....++.. -+.. .+|+ .+..+ -.|||||||||+|||
T Consensus 336 R~aIg~VPQDtvLFND-ti~yni~ygr~--~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 336 RRAIGIVPQDTVLFND-TIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred HHHhCcCcccceehhh-hHHHHHhccCc--cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 4569999999999998 99999998755 34455544444322 1122 3444 23333 379999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+++.+|+||+|||.||+||..+++.++..|++.. .|+|.+++.|+++++-.||.|++|++|+|++.|+++|++...+
T Consensus 413 ~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g 489 (497)
T COG5265 413 TILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489 (497)
T ss_pred HHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCC
Confidence 9999999999999999999999999999999964 6899999999999999999999999999999999999998633
No 316
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.94 E-value=1.6e-26 Score=195.79 Aligned_cols=123 Identities=24% Similarity=0.288 Sum_probs=105.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|++|++.+++.+|+.||+.+....++. + .+++.++++.+++.+ .++++++||||||||++||||++.+|++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~--~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHGG--A--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcCC--c--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 5799999999988889999999887654431 1 345778899999976 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~ 136 (249)
++|||||+|||+.++..+.+.|++++++|.|+|++||+...+. |++++
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 9999999999999999999999998777999999999985543 35543
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=3.4e-26 Score=204.57 Aligned_cols=141 Identities=23% Similarity=0.254 Sum_probs=109.0
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCC---CCCCCcCcCChHHHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAK-----MKELQEVLDLP---PDHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~---~~~~~~~~LSgGqkQRv~iArAL 81 (249)
.|+|++|++.+++. |++||+.+.... ........ +.+.++.+... ..++.+.+||||||||++|||||
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV 174 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH
Confidence 49999999988885 999999874321 11111111 11222222111 12344689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYL-QRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||++||+++++..||++++|++|+++..|+++++...
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999865 5554 57999999999999877999999999999999999988753
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.9e-26 Score=195.07 Aligned_cols=123 Identities=19% Similarity=0.327 Sum_probs=107.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.++|++|++.+++.+|+.||+.+....++ ..+++.++++.+++++ .++++++||||||||++||||++++|++
T Consensus 70 ~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 70 PYCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred hhEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 458999999888788899999998655432 1345677889999975 6888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~ 136 (249)
+||||||+|||+.++..+.+.|++..++|.|+|++||++++++.||-+-
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 9999999999999999999999876667999999999999998887653
No 319
>KOG0061|consensus
Probab=99.94 E-value=1.6e-26 Score=225.97 Aligned_cols=147 Identities=37% Similarity=0.527 Sum_probs=134.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCC-CCCCcC-----cCChHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR---ISSEEFRAKMKELQEVLDLPP-DHRTCS-----TLSGGQVRRVSIA 78 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~-----~LSgGqkQRv~iA 78 (249)
++..|||.|+..+++.+||+|++.|.+.++- .+.++.+++++++++.+||.+ +|..++ .+||||||||+||
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 5679999999999999999999999988753 366899999999999999986 677775 5999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh-HHh-ccCEEEEEeCCEEEEecChhHHHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE-EAR-QANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~-~~~-~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
.-|++||.+|+|||||+|||..+..++.+.|++++++|+|||++-|..+ ++- ..|++++|.+|+++..|+++++..
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 9999999999999999999999999999999999989999999999996 454 499999999999999999987644
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=3.7e-26 Score=221.40 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=117.2
Q ss_pred cEEEEeCCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 10 YIGFMPQET-ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 10 ~Ig~v~Q~~-~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.|||+||++ .+++.+|+.||+.++....+.... .....++++.+++. . .++++++||||||||++|||||+.+|+
T Consensus 388 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 465 (556)
T PRK11819 388 KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGN 465 (556)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 599999997 678889999999886543332211 12345689999996 3 588999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeC-CEEE-EecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRK-GVLL-AEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~-G~iv-~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+.+.|+++. | |||++|||++++.. ||++++|++ |++. ..|+.++..+
T Consensus 466 lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 999999999999999999999999872 4 89999999999976 999999986 7876 4677777654
No 321
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=1.3e-26 Score=221.30 Aligned_cols=139 Identities=22% Similarity=0.345 Sum_probs=113.1
Q ss_pred CcEEEEeCCCCCCC--CCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFD--EFTIAETFQFYAS----LYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~--~lTv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArA 80 (249)
+.|||++|++.++. ..|+.+++.+... .+.....+.+++++++++.+++.. .++++++||||||||++||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 46999999986643 2467666553311 111112333567889999999974 588899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecChhHHh-c-cCEEEEEeCCEEEEec
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNG-QTIIITTHYIEEAR-Q-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~TiiivtH~l~~~~-~-~Dri~vl~~G~iv~~g 147 (249)
|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||+++++. . ||++++|++|+++...
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999998775 57999999999995 4 8999999999987654
No 322
>KOG0056|consensus
Probab=99.94 E-value=2.4e-27 Score=220.28 Aligned_cols=146 Identities=32% Similarity=0.528 Sum_probs=124.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH--HHH-HcCCCCC-CCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE--LQE-VLDLPPD-HRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~--~l~-~~~l~~~-~~~~----~~LSgGqkQRv~iAr 79 (249)
.+.||+|||+..||++ |+..||+|+.. +.+.++..++++. +-+ .++.|+. +.++ -.|||||||||+|||
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 5679999999999998 99999998744 3445554444332 222 5677763 4444 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+++.+|.+++|||.||+||..+++.++..|.++.+ ++|.|++.|+++++-+||.|+++++|+|++.|.++|+....+
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdg 764 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDG 764 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccC
Confidence 99999999999999999999999999999999864 799999999999999999999999999999999999998644
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.94 E-value=4.4e-26 Score=220.67 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=116.3
Q ss_pred cEEEEeCCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 10 YIGFMPQET-ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 10 ~Ig~v~Q~~-~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.|||+||++ .+++.+|+.||+.++...++.... ..+.+++++.+++. . .++++++||||||||++|||||+.+|+
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ 463 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGN 463 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 599999997 478889999999986543332221 22355789999996 3 588999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeC-CEEE-EecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRK-GVLL-AEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~-G~iv-~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+.+.|+++. | |||++|||++++.. ||++++|++ |+++ ..|+.++..+
T Consensus 464 lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 464 VLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999973 4 89999999999976 999999987 5776 4567666543
No 324
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=1.3e-26 Score=193.71 Aligned_cols=96 Identities=33% Similarity=0.536 Sum_probs=89.5
Q ss_pred HHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhH
Q psy4634 51 LQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128 (249)
Q Consensus 51 ~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~ 128 (249)
+++.+++.+ .++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++++++ |.|+|++||++++
T Consensus 81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 788889975 57889999999999999999999999999999999999999999999999998776 8999999999999
Q ss_pred Hhc-cCEEEEEeCCEEEEe
Q psy4634 129 ARQ-ANVVGLMRKGVLLAE 146 (249)
Q Consensus 129 ~~~-~Dri~vl~~G~iv~~ 146 (249)
+.. ||++++|++|+++..
T Consensus 161 ~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 161 AARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHhCCEEEEEECCEEEec
Confidence 965 999999999999764
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=2.9e-26 Score=242.63 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=112.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCCCCCC-----cCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD-------LPPDHRT-----CSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~-----~~~LSgGqkQRv 75 (249)
.+.|+||+|+|.+|+. |++|||.|+.. .++++.+ ++++..+ +++.+.+ -.+||||||||+
T Consensus 678 ~~~Iayv~Q~p~Lf~g-TIreNI~fg~~---~~~e~~~----~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 749 (1495)
T PLN03232 678 RGSVAYVPQVSWIFNA-TVRENILFGSD---FESERYW----RAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV 749 (1495)
T ss_pred cCcEEEEcCccccccc-cHHHHhhcCCc---cCHHHHH----HHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH
Confidence 4579999999999987 99999998743 2333333 3333332 3332222 257999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY-LQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+||||+.++|+++|||||||+||+.+.+.+.+. ++.+ .+|+|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999999987654 5553 36899999999999988899999999999999999999986
Q ss_pred h
Q psy4634 155 S 155 (249)
Q Consensus 155 ~ 155 (249)
+
T Consensus 829 ~ 829 (1495)
T PLN03232 829 S 829 (1495)
T ss_pred c
Confidence 4
No 326
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=6e-26 Score=200.23 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=113.0
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
.++|++|.+.+++. ++.+++.+... ....++.+.++++.+++.. .++.+.+||||||||++|||||+.+|+++
T Consensus 88 ~i~~~~~~~~~~~~-~~~~~i~~~l~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 88 KVIVKPQYVDLIPK-AVKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred ceeeecchhccCch-HHHHHHHHHhc-----hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 47899999888874 88888876422 2334566788999999976 68889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEec
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g 147 (249)
||||||++||+.++..+.+.|++++++|+|||++||+++++.. ||+|++| +|++.+.|
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999998779999999999999976 9999999 56565433
No 327
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.4e-26 Score=200.81 Aligned_cols=149 Identities=28% Similarity=0.483 Sum_probs=134.3
Q ss_pred CcEEEEe-CCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMP-QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~-Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+++|+|+ |...+...+.+.|.+.....+|.++.++.+++.+++.+.++++. .+.+++.||-|||.|+.||.||+|+|+
T Consensus 97 ~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~ 176 (325)
T COG4586 97 RSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPK 176 (325)
T ss_pred HHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCc
Confidence 3466653 44566667778888888888899999999999999999999986 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+|+|||||-|||...+..+.+.++++.++ +.||+++||+++.+.. ||||+.|++|+++.+|+.+++...++
T Consensus 177 VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 177 VLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred EEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 99999999999999999999999999765 9999999999999976 99999999999999999999987654
No 328
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=8.3e-26 Score=186.89 Aligned_cols=100 Identities=31% Similarity=0.359 Sum_probs=90.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
+.++|++|++.++ ..|+.||+.+. ++.+||||||||++|||||+++|+++
T Consensus 64 ~~i~~~~q~~~~~-~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 64 EDLLFLPQRPYLP-LGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred ceEEEECCCCccc-cccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 5799999999876 46999999753 35799999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCC
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKG 141 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G 141 (249)
||||||+|||+.+++.+.+.|+++ +.|+|++||+++....||++++|++|
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999999999999999999986 58999999999876669999999876
No 329
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.93 E-value=4.2e-26 Score=212.88 Aligned_cols=145 Identities=30% Similarity=0.466 Sum_probs=121.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHH--HHHHH-HcCCCCC-CCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKM--KELQE-VLDLPPD-HRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~--~~~l~-~~~l~~~-~~~~----~~LSgGqkQRv~iAr 79 (249)
.+.|||+||+..||+. ||.|||.=+.. ..+.+.+.+.+ ..+-| .+.+++. +..+ ..||||||||+++||
T Consensus 409 G~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 409 GRHIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred ccccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 6789999999999998 99999974322 23333322222 12222 3456663 4444 699999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||-.+|.+++||||-|+||...+..+.+.|...+++|.|+|++||+.+.+..+|+|.+|++|++-..|+.+|+..+
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999999899999999999999999999999999999999999998765
No 330
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=3.7e-25 Score=191.71 Aligned_cols=99 Identities=27% Similarity=0.382 Sum_probs=91.8
Q ss_pred HHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 49 KELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP--SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 49 ~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
.+.++.+++.. .++++++||||||||++|||||+.+| +++||||||+|||+.++..+.+.|++++++|.|+|++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 46789999964 58889999999999999999999998 599999999999999999999999998777999999999
Q ss_pred ChhHHhccCEEEEE------eCCEEEEec
Q psy4634 125 YIEEARQANVVGLM------RKGVLLAEK 147 (249)
Q Consensus 125 ~l~~~~~~Dri~vl------~~G~iv~~g 147 (249)
+++++..||++++| ++|+|+++|
T Consensus 198 ~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99998779999999 999999875
No 331
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=8.6e-26 Score=187.36 Aligned_cols=96 Identities=38% Similarity=0.630 Sum_probs=89.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
+.++|+||++.+++ .|++||+ ||||||||++|||||+.+|+++
T Consensus 76 ~~i~~~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 76 KNIAYVPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred hhEEEEcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 46999999998887 5999987 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCE
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGV 142 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~ 142 (249)
||||||+|||+.++..+.+.|+++. +++|+|++||+++++..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999985 4799999999999996699999999985
No 332
>PLN03130 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.2e-25 Score=238.97 Aligned_cols=139 Identities=24% Similarity=0.406 Sum_probs=112.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCCCCC-----CcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD-------LPPDHR-----TCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~-----~~~~LSgGqkQRv 75 (249)
...|+||+|+|.+|+. |++|||.|+.. .++++ .+++++..+ +++.+. .-.+||||||||+
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~fg~~---~d~e~----y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRI 749 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILFGSP---FDPER----YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRV 749 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhCCCc---ccHHH----HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHH
Confidence 3579999999999987 99999998743 22333 333333332 333222 2357999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFW-QYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+||||+.++|+++|||||||+||+.+.+.+. ++++.+. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 750 aLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 750 SMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999888775 5666643 5899999999999988899999999999999999999976
Q ss_pred h
Q psy4634 155 S 155 (249)
Q Consensus 155 ~ 155 (249)
+
T Consensus 829 ~ 829 (1622)
T PLN03130 829 N 829 (1622)
T ss_pred c
Confidence 4
No 333
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=1.4e-25 Score=216.93 Aligned_cols=129 Identities=22% Similarity=0.251 Sum_probs=107.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CC---CC--cCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DH---RT--CSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~---~~--~~~LSgGqkQRv~iArAL 81 (249)
.++++|+||++.+|+. |+++| + . . ...+.+.+.++.+++.. .+ .. -.+||||||||++||||+
T Consensus 396 ~~~i~~v~q~~~lf~~-ti~~n---~-~--~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 396 RKLFSAVFTDFHLFDQ-LLGPE---G-K--P----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred hhheEEEecChhHHHH-hhccc---c-C--c----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 4679999999999986 88887 1 1 1 12345667778887753 21 11 358999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhccCEEEEEeCCEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQANVVGLMRKGVLLAEK 147 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g 147 (249)
+++|++|||||||++||+.+++.+.+.+.+..+ .|+|+|++||+++.+..||+|++|++|++++..
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999987543 589999999999888889999999999998763
No 334
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=5.8e-26 Score=218.41 Aligned_cols=123 Identities=29% Similarity=0.451 Sum_probs=100.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------C-----CCCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-------P-----DHRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-----~~~~~~~LSgGqkQRv 75 (249)
.+++|||||++.+|+. |++||+.++.. ..++++ +.++++..++. + ......+||||||||+
T Consensus 395 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~----i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAG-TIAENIRLARP--DASDAE----IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred HhheEEEcCCCcccCc-CHHHHHhccCC--CCCHHH----HHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence 4579999999999986 99999998643 233333 33444444432 1 1223468999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM 138 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl 138 (249)
+||||++++|+++|||||||+||+.+++.+.+.|+++. +|+|+|++||+++.++.||+|++|
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999999999974 589999999999999889999875
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=99.93 E-value=1.5e-25 Score=235.78 Aligned_cols=147 Identities=18% Similarity=0.265 Sum_probs=124.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC----------CHHHH------------------------HHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI----------SSEEF------------------------RAKMKELQE 53 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~----------~~~~~------------------------~~~~~~~l~ 53 (249)
.+.+||++|++.+++.+||+||+.|.++.++. ++++. ...++++++
T Consensus 238 ~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~ 317 (1470)
T PLN03140 238 RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLK 317 (1470)
T ss_pred cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHH
Confidence 46799999999999999999999998765431 11111 113467899
Q ss_pred HcCCCC-C-----CCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecCh
Q psy4634 54 VLDLPP-D-----HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYI 126 (249)
Q Consensus 54 ~~~l~~-~-----~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l 126 (249)
.+||++ . ++.++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ .|+|+|+++|+.
T Consensus 318 ~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 318 ILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred HcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 999975 3 556789999999999999999999999999999999999999999999999976 499999999997
Q ss_pred -hHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 127 -EEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 127 -~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+++.. +|+|++|++|+++..|+++++..
T Consensus 398 ~~~i~~lfD~vilL~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 398 APETFDLFDDIILLSEGQIVYQGPRDHILE 427 (1470)
T ss_pred CHHHHHHhheEEEeeCceEEEeCCHHHHHH
Confidence 46655 99999999999999999988753
No 336
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=1.4e-25 Score=217.30 Aligned_cols=128 Identities=20% Similarity=0.340 Sum_probs=106.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-C------CCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-D------HRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~------~~~~~~LSgGqkQRv~iArAL 81 (249)
+.++||+|++.+|++ |+++|.. . +..++++.++++.+++++ . .++..+||||||||++||||+
T Consensus 416 ~~i~~v~q~~~lf~~-ti~~n~~------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 416 DLFSAIFADFHLFDD-LIGPDEG------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred hhCcEEccChhhhhh-hhhcccc------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 569999999999986 8888841 1 122445667788877753 1 233478999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEe
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQ-RMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAE 146 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~-~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~ 146 (249)
+++|+++||||||++||+.+++.+.+.+. .++.+|+|+|++||+++.+..||+|++|++|++++.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998664 455568999999999998888999999999999864
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.5e-25 Score=217.01 Aligned_cols=136 Identities=20% Similarity=0.327 Sum_probs=114.6
Q ss_pred CcEEEEeCCC--CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
..+||++|++ .+.+..|+.+++.. .. ......++.++++.+++. . .++++++|||||||||+||++|+++
T Consensus 375 ~~igy~~Q~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 375 IKLGYFAQHQLEFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EEEEEecCcchhhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 3699999975 35556688887542 11 122345678899999995 3 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEE-EecChhHHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLL-AEKSPEELI 153 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv-~~g~~~el~ 153 (249)
|++|||||||+|||+.++..+.++|+++ .| |||+||||++++.. ||+|++|++|+++ ..|+.++..
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999997 34 99999999999976 9999999999997 678888764
No 338
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.9e-25 Score=187.10 Aligned_cols=147 Identities=25% Similarity=0.386 Sum_probs=129.9
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASL--------YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
.||-=||.|..|..+||+||+...... +.-...+-+.+++++|+..+|.+ +++..+.||.||||++.|+.-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence 477789999999999999999875432 11122344678999999999986 788999999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
++++|++|+||||++|+--....+.-++|+.++. +.+|+++.|||.+++. |++|-+|+.|.+.++|+.+++..+..
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcc
Confidence 9999999999999999999999999999999865 5899999999999987 99999999999999999999987643
No 339
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.92 E-value=2.8e-25 Score=219.12 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=105.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCC-CCCC---------cCcCChHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS-SEEFRAKMKELQEVLDLPP-DHRT---------CSTLSGGQVRRVS 76 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-~~~~---------~~~LSgGqkQRv~ 76 (249)
.+.+||+||++.+++. |++||+.++....+.. .....+++.++++.+++++ .+++ .++||||||||++
T Consensus 514 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~ 592 (659)
T TIGR00954 514 KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIA 592 (659)
T ss_pred CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHH
Confidence 3579999999999987 9999998764321110 0111345667788888864 3333 3799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
|||||+++|+++||||||+|||+.+++.+.+.+++ .|+|+|++||+++.++.||++++|+.
T Consensus 593 iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 593 MARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999998876 38999999999999888999999963
No 340
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=1.1e-24 Score=179.67 Aligned_cols=80 Identities=31% Similarity=0.549 Sum_probs=76.3
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEE
Q psy4634 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLL 144 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv 144 (249)
+||||||||++||||++++|+++||||||+|||+.+++.+.+.|++++++|.|+|++||+++++.. ||++++|++|+++
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 399999999999999999999999999999999999999999999987779999999999999876 9999999999987
Q ss_pred E
Q psy4634 145 A 145 (249)
Q Consensus 145 ~ 145 (249)
+
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 4
No 341
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=1.1e-24 Score=231.10 Aligned_cols=142 Identities=21% Similarity=0.324 Sum_probs=113.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-----KMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.|||+||++.+++ .|++||+.++... ..+...+ .+++.++.+ |+.. .+++..+||||||||++||||
T Consensus 721 ~~i~yv~Q~~~l~~-~Tv~enI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARA 796 (1560)
T PTZ00243 721 RSIAYVPQQAWIMN-ATVRGNILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARA 796 (1560)
T ss_pred CeEEEEeCCCccCC-CcHHHHHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHH
Confidence 56999999999886 5999999985321 1111111 223334444 5543 466789999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQY-LQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+.+|+++||||||++||+.+.+.+++. +... .+|+|+|++||+++.+..||+|++|++|+++..|+++++.+.
T Consensus 797 l~~~p~illLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 797 VYANRDVYLLDDPLSALDAHVGERVVEECFLGA-LAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh-hCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999998888764 3332 358999999999999988999999999999999999998753
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.92 E-value=1.3e-24 Score=213.73 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=114.7
Q ss_pred cEEEEeCCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 10 YIGFMPQET-ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 10 ~Ig~v~Q~~-~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.|||++|++ .+++.+||.||+.+........ .....+.++++.+++. . .++++++||||||||++|||||+.+|+
T Consensus 383 ~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 383 EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 599999986 5888899999998753211111 1234577889999985 3 588999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEe-CCEEEEe-cChhHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMR-KGVLLAE-KSPEEL 152 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~-~G~iv~~-g~~~el 152 (249)
+|||||||+|||+.++..+.++|+++ +.|||+||||.+++.. ||++++|+ +|++... |+-++.
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999886 3599999999999976 99999998 8998764 455544
No 343
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=2.4e-24 Score=180.18 Aligned_cols=95 Identities=26% Similarity=0.353 Sum_probs=86.8
Q ss_pred HHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 49 KELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHT--PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 49 ~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
.++++.+++.. .++++.+||||||||++|||||+.+ |+++||||||++||+.+++.+.+.|++++++|+|||++||
T Consensus 68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 35688899863 5788999999999999999999999 9999999999999999999999999998767999999999
Q ss_pred ChhHHhccCEEEEEeCCEE
Q psy4634 125 YIEEARQANVVGLMRKGVL 143 (249)
Q Consensus 125 ~l~~~~~~Dri~vl~~G~i 143 (249)
+++++..||++++|++|..
T Consensus 148 ~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 148 NLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHhCCEEEEECCCCC
Confidence 9999867999999977654
No 344
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=9.4e-25 Score=231.54 Aligned_cols=142 Identities=23% Similarity=0.372 Sum_probs=113.7
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH--HHHHHcCC-CC-----CCCCcCcCChHHHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMK--ELQEVLDL-PP-----DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~--~~l~~~~l-~~-----~~~~~~~LSgGqkQRv~iArAL 81 (249)
.|||+||++.+++. |++|||.++.. ...++.++.++ .+.+.++. +. ..++..+||||||||++||||+
T Consensus 700 ~i~yv~Q~~~l~~~-Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 700 SVAYVPQQAWIQND-SLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEEEEcCCccccCC-cHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 69999999998874 99999998643 22222222221 11222332 22 2455689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRM--SSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l--~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
.++|+++||||||++||+.+.+.+++.+.+. ..+|+|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~ 851 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR 851 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc
Confidence 9999999999999999999999999999753 2358999999999999988999999999999999999999764
No 345
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=4.5e-24 Score=177.55 Aligned_cols=151 Identities=23% Similarity=0.325 Sum_probs=134.5
Q ss_pred CCcEEEEeCCCC--CCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCC-CC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETA--LFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDL-PP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l-~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.|-++||+|+ +.|.+.+.+.+....++. .++.+.+.+++.+.+.++|| ++ .+.+++.||-||||||++||||+
T Consensus 86 ~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI 165 (267)
T COG4167 86 SKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI 165 (267)
T ss_pred hhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh
Confidence 567999999985 556677777777766654 35677788899999999998 44 78899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~ 158 (249)
.+|+++|.||..++||...+.++.++..++.++ |.+.|+|+.++..++. +|.|+||+.|++++.|++.+++.....
T Consensus 166 L~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~ 243 (267)
T COG4167 166 LRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLH 243 (267)
T ss_pred cCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCcc
Confidence 999999999999999999999999999999876 9999999999999987 999999999999999999999986543
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.92 E-value=3.4e-24 Score=226.86 Aligned_cols=141 Identities=26% Similarity=0.327 Sum_probs=112.4
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCC---CCCCcCcCChHHHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAK-----MKELQEVLDLPP---DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~---~~~~~~~LSgGqkQRv~iArAL 81 (249)
.|+|++|++.+|+. |++|||.|+... ..+..++. +.+.++.+...+ ...+..+||||||||++||||+
T Consensus 488 ~iayv~Q~~~l~~~-Ti~eNI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl 563 (1490)
T TIGR01271 488 RISFSPQTSWIMPG-TIKDNIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV 563 (1490)
T ss_pred EEEEEeCCCccCCc-cHHHHHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH
Confidence 59999999999986 999999987431 11111111 122222222211 2345689999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQY-LQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+++|+++||||||+|||+.+++.+++. +.++. +|+|+|++||+++.+..||+|++|++|+++..|+++++...
T Consensus 564 ~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 564 YKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999984 66654 58999999999999988999999999999999999998753
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=2.9e-24 Score=209.39 Aligned_cols=122 Identities=27% Similarity=0.350 Sum_probs=104.4
Q ss_pred cEEEEeCCCCCCCC---CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 10 YIGFMPQETALFDE---FTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~---lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
++++.+|....++. .||.|++.+. +.+++++++++.+++.. .++++++||||||||++||+||+++|
T Consensus 161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 161 KVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred ceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35666665433332 2999998631 23456788999999976 68999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCC
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKG 141 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G 141 (249)
++|||||||++||+.++..+.+.|+++++ |+|||++||+++++.. ||++++|++|
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999987 9999999999999976 9999999873
No 348
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.5e-24 Score=202.28 Aligned_cols=143 Identities=25% Similarity=0.424 Sum_probs=123.4
Q ss_pred CcEEEEeCCC---CCCCCCCHHHHHHHHHH--hc---CCCHHHHHHHHHHHHHHcCCC--CCCCCcCcCChHHHHHHHHH
Q psy4634 9 TYIGFMPQET---ALFDEFTIAETFQFYAS--LY---RISSEEFRAKMKELQEVLDLP--PDHRTCSTLSGGQVRRVSIA 78 (249)
Q Consensus 9 ~~Ig~v~Q~~---~l~~~lTv~enl~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~LSgGqkQRv~iA 78 (249)
..|+|||.+. .++..+++.+|+.+... .. -+.....++.++++.+.+++. ..+.++.+||||.||||.||
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 4699999875 68889999999987621 11 134455566778888889885 25788999999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~e 151 (249)
|.|..+|++|||||||.|.|.-++.++.++|++++++|++||++|-++.|+.. ||||+||++|+++.+-+.++
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999975 99999999999998665554
No 349
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.91 E-value=1e-24 Score=209.85 Aligned_cols=111 Identities=28% Similarity=0.440 Sum_probs=89.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-CCCC----cCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-DHRT----CSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~----~~~LSgGqkQRv 75 (249)
.+.||||||+|.+|+. |++|||.++.. ..++++. .++++..++ ++ .+.. -.+||||||||+
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~~--~~~~e~i----~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRi 479 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGRP--DATDEEL----WAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRL 479 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccCC--CCCHHHH----HHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHH
Confidence 3579999999999997 99999998632 2344443 334444333 32 1222 257999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
+|||||+++|++||||||||+||+.+++.+++.|+++ .+++|+|++||++
T Consensus 480 aiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 480 ALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 9999999999999999999999999999999999985 4579999999985
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=1.2e-23 Score=208.96 Aligned_cols=135 Identities=19% Similarity=0.295 Sum_probs=109.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHH-Hhc-CCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYA-SLY-RISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~-~~~-~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+|||++|++. ..+++.++..+.. ..+ +.. .+++.++++.+++. . .++++++||||||||++|||||+++
T Consensus 572 ~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 572 VRMAVFSQHHV--DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred eeEEEEecccc--ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 46999999863 3456666643321 212 222 34577889999996 3 5888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEE-EecChhHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLL-AEKSPEEL 152 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv-~~g~~~el 152 (249)
|++|||||||+|||+.++..+.+.|.++ .| |||++|||++++.. ||++++|++|+++ ..|+.++.
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999998888775 34 99999999999976 9999999999998 66777654
No 351
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2e-24 Score=186.48 Aligned_cols=141 Identities=28% Similarity=0.374 Sum_probs=118.0
Q ss_pred CCcEEEEeCC--CCCCCCCCHHHHHHHH--HH--hcC-CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQE--TALFDEFTIAETFQFY--AS--LYR-ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~--~~l~~~lTv~enl~~~--~~--~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.++||+|+-+ ..+....+++|-+.-+ .. +|. ...++..+++..+++.+++.+ .+++..+||-|||||+.|||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 5779999643 2334455788876532 22 232 334566788889999999987 79999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN--GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
||+.+|++||||||++|||...+..+.+.|.+++.. +.|+|+|||..+++.. .++++.+++|+++.+|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999998765 8899999999999976 79999999999998773
No 352
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=6.9e-25 Score=180.02 Aligned_cols=133 Identities=25% Similarity=0.367 Sum_probs=118.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
...|+|+.|.|.||.+ ||+||+.|.-.++.-.. .+.+...+++++++++ ..+.+.+||||||||++|+|.|.--|
T Consensus 76 Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 76 RQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HHHHHHHHcCcccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCC
Confidence 4568999999999998 99999999876654211 3567778899999986 58899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecChhHH-hccCEEEEEeCCEE
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIEEA-RQANVVGLMRKGVL 143 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~TiiivtH~l~~~-~~~Dri~vl~~G~i 143 (249)
+|||||||||+||+.+.+.+-++|.++. .+...++-+|||-+++ +.+|+++-+..|.+
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999999999999997 4589999999999996 66999999999876
No 353
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=203.86 Aligned_cols=107 Identities=22% Similarity=0.314 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy4634 44 FRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121 (249)
Q Consensus 44 ~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiii 121 (249)
.+.++.++++.+|+. . .++++++|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++ +.|||+
T Consensus 125 ~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tvii 201 (638)
T PRK10636 125 IRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLIL 201 (638)
T ss_pred hHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEE
Confidence 345788899999996 3 68899999999999999999999999999999999999999999999998875 469999
Q ss_pred EecChhHHhc-cCEEEEEeCCEEEE-ecChhHHH
Q psy4634 122 TTHYIEEARQ-ANVVGLMRKGVLLA-EKSPEELI 153 (249)
Q Consensus 122 vtH~l~~~~~-~Dri~vl~~G~iv~-~g~~~el~ 153 (249)
||||.+++.. ||+|++|++|+++. .|+.+...
T Consensus 202 vsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 202 ISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 9999999976 99999999999964 56665543
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=4.3e-23 Score=202.95 Aligned_cols=106 Identities=25% Similarity=0.454 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy4634 44 FRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123 (249)
Q Consensus 44 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiivt 123 (249)
...++.++++.+|+.. ++++++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||
T Consensus 135 ~~~~~~~~l~~lgl~~-~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivs 210 (635)
T PRK11147 135 LENRINEVLAQLGLDP-DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFIS 210 (635)
T ss_pred HHHHHHHHHHhCCCCC-CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEe
Confidence 3456788899999964 78899999999999999999999999999999999999999999999999872 5999999
Q ss_pred cChhHHhc-cCEEEEEeCCEEEE-ecChhHHH
Q psy4634 124 HYIEEARQ-ANVVGLMRKGVLLA-EKSPEELI 153 (249)
Q Consensus 124 H~l~~~~~-~Dri~vl~~G~iv~-~g~~~el~ 153 (249)
||.+++.. ||+|++|++|+++. .|+.++..
T Consensus 211 Hd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 211 HDRSFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred CCHHHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 99999976 99999999999974 57776654
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=4.7e-23 Score=177.95 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=130.7
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy4634 18 TALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSG 96 (249)
Q Consensus 18 ~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsg 96 (249)
..+-+.+|.+||+.+.+.+.|+++++++++++++.+.-+|.+ .+.|++++|.||+-|+++|.|...+|++||+||..+-
T Consensus 98 ~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 98 AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred cCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 345678999999999999999999999999999999999987 7999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 97 LDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 97 LD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
.|+.-+++-.+.+.++.++++|+|++||+++.++. |||+++|++|++...|+++++...
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 99999999999999997888999999999999987 999999999999999999998764
No 356
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.90 E-value=4.9e-23 Score=208.43 Aligned_cols=133 Identities=28% Similarity=0.481 Sum_probs=114.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC--C
Q psy4634 21 FDEFTIAETFQFYASLYRISS----------EEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP--S 86 (249)
Q Consensus 21 ~~~lTv~enl~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P--~ 86 (249)
+..+||.|.+.|...+ +.+. +++.++++ .++.+||.+ .++++.+|||||||||+||+||+.+| +
T Consensus 434 ~~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ 511 (943)
T PRK00349 434 VSELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV 511 (943)
T ss_pred HhcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence 3467999999985443 3332 24445554 678889974 58999999999999999999999997 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
++||||||+||||..+..+.++|++++++|.|||+|+|+++++..||+|++| ++|+++.+|+++++...
T Consensus 512 llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 512 LYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999999999999999999999988899999999999998779999999 99999999999998653
No 357
>KOG0054|consensus
Probab=99.90 E-value=1.9e-23 Score=215.29 Aligned_cols=139 Identities=24% Similarity=0.403 Sum_probs=111.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCCCCC-----cCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PPDHRT-----CSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~-----~~~LSgGqkQRv~ 76 (249)
..++|+||+|.+++. ||+|||.|+..+ .+ ++-+++++.+.| +..|.+ --+||||||||++
T Consensus 582 gsiaYv~Q~pWI~ng-TvreNILFG~~~---d~----~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIs 653 (1381)
T KOG0054|consen 582 GSVAYVPQQPWIQNG-TVRENILFGSPY---DE----ERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRIS 653 (1381)
T ss_pred CeEEEeccccHhhCC-cHHHhhhcCccc---cH----HHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHH
Confidence 349999999999997 999999997542 22 233333333322 223333 3699999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||||+-++++++|||.|+|++|....+.+++-.-+-.-+++|+|++||.+..+..||.|++|++|+|.+.|+.+|+.+.
T Consensus 654 LARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 654 LARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred HHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc
Confidence 9999999999999999999999998887665543333357999999999999999999999999999999999999854
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.9e-23 Score=171.58 Aligned_cols=143 Identities=27% Similarity=0.418 Sum_probs=119.2
Q ss_pred cEEEEeCCCC--CCCCC----CHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHH
Q psy4634 10 YIGFMPQETA--LFDEF----TIAETF-QFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 10 ~Ig~v~Q~~~--l~~~l----Tv~enl-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArA 80 (249)
.-|+|.|+|. +-... ++.|-+ +.+.+.|+ +++..+.++++.++++. .+..+.++|||||||+.|||-
T Consensus 90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARn 165 (258)
T COG4107 90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARN 165 (258)
T ss_pred ccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHH
Confidence 4689999884 22222 333332 23444454 45667788999999974 488899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|+..|+++++||||.|||..-+..+.++++.+..+ |..++++|||+..++. +||..+|++|++++.|-.+.+..+.
T Consensus 166 LVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP 243 (258)
T COG4107 166 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDP 243 (258)
T ss_pred hccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCC
Confidence 99999999999999999999999999999999877 9999999999999986 9999999999999999888877654
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.1e-23 Score=170.37 Aligned_cols=129 Identities=27% Similarity=0.374 Sum_probs=111.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+++|++||++.+|+.++|++|+.|.... .+..+.+++.++.++++.+|.. .++.+.+||||||-||++-|+|+.+|+
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred hhheeeeecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 46899999999999999999999875432 3334566777888999999986 688899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEecChhHHhccCEEEE
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTHYIEEARQANVVGL 137 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~TiiivtH~l~~~~~~Dri~v 137 (249)
.++||||+|.||..-|.++.++.-. ..+.|..+++||||...+....||+=
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie 206 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIE 206 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeee
Confidence 9999999999999999999999865 44559999999999999875455543
No 360
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1e-22 Score=172.90 Aligned_cols=143 Identities=27% Similarity=0.387 Sum_probs=117.3
Q ss_pred CCcEEEEeCCC--CCCCCCCHHHHHHHHHHh---cCCCH---HHHHHHHHHHHHHcCCC--C-CCCCcCcCChHHHHHHH
Q psy4634 8 STYIGFMPQET--ALFDEFTIAETFQFYASL---YRISS---EEFRAKMKELQEVLDLP--P-DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 8 ~~~Ig~v~Q~~--~l~~~lTv~enl~~~~~~---~~~~~---~~~~~~~~~~l~~~~l~--~-~~~~~~~LSgGqkQRv~ 76 (249)
+..++-|+|+| ..++.+|+.||+.....- +++.. ...++...+-++.+++. . .+.++.-|||||||-++
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 34567789998 568999999999876442 23332 23344455556666653 3 57889999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPE 150 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~ 150 (249)
++.|-++.|++|+|||-|++|||.....+++.=.++.++ +.|.+||||.|+.+-. .+|.++|++|+|+.+-+-+
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 999999999999999999999999999999999998766 8899999999999865 9999999999999876443
No 361
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=1.7e-22 Score=169.15 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=76.3
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEecChhHHhc-cCEEEEEeCCEEE
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNG-QTIIITTHYIEEARQ-ANVVGLMRKGVLL 144 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~TiiivtH~l~~~~~-~Dri~vl~~G~iv 144 (249)
||||||||++||||++.+|++++|||||+|||+.+++.+.+.++++++++ .|+|++||+++++.. ||++++|+++-.+
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 99999999999999999999999999999999999999999999987764 999999999999976 9999999988665
Q ss_pred Ee--cChh
Q psy4634 145 AE--KSPE 150 (249)
Q Consensus 145 ~~--g~~~ 150 (249)
.+ |.|.
T Consensus 152 ~~~~~~~~ 159 (177)
T cd03222 152 YGIASQPK 159 (177)
T ss_pred ceeccCCc
Confidence 33 4444
No 362
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=3.5e-22 Score=201.91 Aligned_cols=132 Identities=29% Similarity=0.435 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC--CEE
Q psy4634 22 DEFTIAETFQFYASLYRISS---------EEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP--SLV 88 (249)
Q Consensus 22 ~~lTv~enl~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P--~iL 88 (249)
..||+.|.+.|...+...+. .++.++++ .+..+||.. .++++.+|||||+||+.||++|+.+| +++
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl~-~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERLG-FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 45789998888765421110 12233332 356778874 48899999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHH
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIA 154 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~ 154 (249)
||||||+|||+..+..+.++|++++++|.|||+|+|+++++..||+|++| ++|+|++.|+++++..
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 99999999999999999999999988899999999999999889999999 9999999999999854
No 363
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=4.3e-22 Score=201.60 Aligned_cols=128 Identities=27% Similarity=0.437 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q psy4634 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGL 97 (249)
Q Consensus 23 ~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P---~iLlLDEPtsgL 97 (249)
.+|+.|++.|+....+. .+..+.++.++|.. .++++.+||||||||+.||++|+++| +++||||||+||
T Consensus 791 ~ltv~E~l~~f~~~~~i------~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 791 DMTVEEALEFFEAIPKI------ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred cCcHHHHHHHHHhchhh------hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 37999999987654321 23456789999974 58889999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHhc
Q psy4634 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIASY 156 (249)
Q Consensus 98 D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~~ 156 (249)
|+..+..+++.|+++.++|.|||++||+++.+..||+|+.| ++|++++.|+++++....
T Consensus 865 D~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 865 HFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 99999999999999987899999999999999779999999 799999999999998653
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.88 E-value=2.5e-22 Score=192.74 Aligned_cols=141 Identities=29% Similarity=0.370 Sum_probs=115.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh-cCC-----------------------------CHHHHHHHHHHHHHHcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL-YRI-----------------------------SSEEFRAKMKELQEVLDLP 58 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~-~~~-----------------------------~~~~~~~~~~~~l~~~~l~ 58 (249)
-++||++|++.+++..||.+.+.-+..- +.. ...+.+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 4799999999999988999988654321 000 0011235666777778887
Q ss_pred CCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEE
Q psy4634 59 PDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGL 137 (249)
Q Consensus 59 ~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~v 137 (249)
..++++++||||||.||+||+||..+|++||||||||.||..+...+-+.|.++ +| |+|+||||-.++.. |++|+-
T Consensus 146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 146 DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEE
Confidence 558899999999999999999999999999999999999999999999999875 46 99999999999987 999999
Q ss_pred EeCCEEEEe-cChhHH
Q psy4634 138 MRKGVLLAE-KSPEEL 152 (249)
Q Consensus 138 l~~G~iv~~-g~~~el 152 (249)
++.|++... |+-+..
T Consensus 223 ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 223 LDRGKLTPYKGNYSSY 238 (530)
T ss_pred ecCCceeEecCCHHHH
Confidence 999987654 454443
No 365
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=5.8e-22 Score=208.86 Aligned_cols=135 Identities=32% Similarity=0.445 Sum_probs=117.7
Q ss_pred CCCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHh---cCCCEEEEe
Q psy4634 20 LFDEFTIAETFQFYASL---YRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLL---HTPSLVILD 91 (249)
Q Consensus 20 l~~~lTv~enl~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~---~~P~iLlLD 91 (249)
.|...||.|++.+...- +....++..+++ ++++.+++.+ .++++.+||||||||++||+||+ .+|+++|||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 56788999999886542 223345566667 5789999975 48899999999999999999998 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEe------CCEEEEecChhHHHHh
Q psy4634 92 EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR------KGVLLAEKSPEELIAS 155 (249)
Q Consensus 92 EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~------~G~iv~~g~~~el~~~ 155 (249)
|||+|||+.+++.++++|++++++|.|||++||+++++..||++++|. +|+++++|+++++...
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~ 907 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIHL 907 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHhc
Confidence 999999999999999999999888999999999999996699999996 7999999999998763
No 366
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.88 E-value=2.9e-22 Score=162.14 Aligned_cols=75 Identities=32% Similarity=0.403 Sum_probs=70.7
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCE
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~ 142 (249)
.+||+||+||++|||||+++|+++||||||+|||+.++..+.+.|+++ +.|++++||+++++.. ||++++|++|+
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 459999999999999999999999999999999999999999999986 4799999999999976 99999999985
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.88 E-value=4.4e-22 Score=169.25 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=92.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHh----c
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLL----H 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~----~ 83 (249)
.+.+||+||++..+ | +... .++++++++. -+..++++.+||||||||++||++++ .
T Consensus 75 ~~~v~~vfq~~~~~----------~-----~~~~---~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~ 134 (197)
T cd03278 75 FAEVTLTFDNSDGR----------Y-----SIIS---QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVR 134 (197)
T ss_pred eEEEEEEEEcCCCc----------e-----eEEe---hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccC
Confidence 46799999999876 1 1101 2356666766 22357889999999999999999997 4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++..||+++.+..
T Consensus 135 ~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 135 PSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEe
Confidence 6799999999999999999999999999854 7899999999998877999999864
No 368
>KOG0054|consensus
Probab=99.88 E-value=1.1e-22 Score=209.61 Aligned_cols=145 Identities=21% Similarity=0.357 Sum_probs=118.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH-HH-Hc-CCCC-CCCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL-QE-VL-DLPP-DHRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~-l~-~~-~l~~-~~~~~----~~LSgGqkQRv~iAr 79 (249)
.++++.+||+|.+|.+ |+|.|+.-... .+++++.++.++. ++ .+ .++. .|..+ .++|-||||-++|||
T Consensus 1213 RsrlsIIPQdPvLFsG-TvR~NLDPf~e---~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLAR 1288 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSG-TVRFNLDPFDE---YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLAR 1288 (1381)
T ss_pred HhcCeeeCCCCceecC-ccccccCcccc---cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHH
Confidence 5679999999999998 99999984432 3455555544332 11 11 2222 23333 689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
||+++++||+|||+|++.|+.+-..+++.|++-= +++|||.+.|+++++.+||||+||++|++++.|+|.++.++.+
T Consensus 1289 ALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1289 ALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKD 1365 (1381)
T ss_pred HHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCc
Confidence 9999999999999999999999999999999843 4799999999999999999999999999999999999997643
No 369
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.1e-21 Score=198.32 Aligned_cols=124 Identities=27% Similarity=0.460 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhc---CCCEEEEeCCCCCC
Q psy4634 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLH---TPSLVILDEPTSGL 97 (249)
Q Consensus 23 ~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~---~P~iLlLDEPtsgL 97 (249)
.+||.|.+.|+..+.+. .+..++++.+||.. .++++.+|||||+||+.||++|++ +|+++||||||+||
T Consensus 789 ~~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgL 862 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL 862 (924)
T ss_pred CCcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCC
Confidence 47888888887654332 13446788999974 588899999999999999999997 59999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHH
Q psy4634 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEEL 152 (249)
Q Consensus 98 D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el 152 (249)
|+..+..+++.|+++.++|.|||++||+++.+..||++++| ++|++++.|+++++
T Consensus 863 D~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 863 HFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999987899999999999999779999999 79999999998875
No 370
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=1.1e-21 Score=194.80 Aligned_cols=106 Identities=24% Similarity=0.328 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy4634 45 RAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122 (249)
Q Consensus 45 ~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiiv 122 (249)
+.++.++++.+|+. . .++++++||||||||++||+||+.+|++|||||||++||+.++..+.+.|+++ |.|+|+|
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 34455667777775 3 57889999999999999999999999999999999999999999999999886 6899999
Q ss_pred ecChhHHhc-cCEEEEEeCCEEE-EecChhHHH
Q psy4634 123 THYIEEARQ-ANVVGLMRKGVLL-AEKSPEELI 153 (249)
Q Consensus 123 tH~l~~~~~-~Dri~vl~~G~iv-~~g~~~el~ 153 (249)
|||++++.. ||+|++|++|++. ..|+.++..
T Consensus 398 sHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 398 SHAREFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999976 9999999999996 566765543
No 371
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.9e-21 Score=164.61 Aligned_cols=151 Identities=26% Similarity=0.311 Sum_probs=131.1
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCCCC--CCCCc-CcCChHHHHHHHH
Q psy4634 4 TSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRIS---SEEFRAKMKELQEVLDLPP--DHRTC-STLSGGQVRRVSI 77 (249)
Q Consensus 4 ~~~~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~~~~~-~~LSgGqkQRv~i 77 (249)
.++-+..|.+.+|.|.-++..|+.+.++.......-. ..+..+.+++.++.++++. .+|.+ ..+|||||+|..|
T Consensus 76 ~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei 155 (251)
T COG0396 76 DERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI 155 (251)
T ss_pred hHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence 3444567889999999999999999998765542211 2466788899999999975 57887 5799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ--ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~--~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+..++.+|++.|||||-||||..+-+.+-+.+.+++++|.+++++||+-..+.. .|++.+|-+|+|+.+|.+ ++...
T Consensus 156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~ 234 (251)
T COG0396 156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEE 234 (251)
T ss_pred HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHH
Confidence 999999999999999999999999999999999999999999999999999875 699999999999999999 66553
No 372
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.6e-21 Score=159.22 Aligned_cols=76 Identities=45% Similarity=0.682 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCE
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~ 142 (249)
||+||+||++||||++.+|++++|||||+|||+.++..+.+.|.++.+.++|++++||+++++.. ||++++|++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999999999999999999999999999987668999999999999987 89999999875
No 373
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=5.3e-22 Score=174.24 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=104.6
Q ss_pred CCcEEEEeCCC---------CCCCCCCHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHcCCC------------------
Q psy4634 8 STYIGFMPQET---------ALFDEFTIAETFQFYASLYR-I-SSEEFRAKMKELQEVLDLP------------------ 58 (249)
Q Consensus 8 ~~~Ig~v~Q~~---------~l~~~lTv~enl~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~------------------ 58 (249)
...|++++|++ .+.+.+||.+++.++..... . .+....+++.++++.++++
T Consensus 76 ~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 76 KASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 44799999985 34567889988865432211 1 1223457788889999985
Q ss_pred --C-CCCCcCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc
Q psy4634 59 --P-DHRTCSTLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ 131 (249)
Q Consensus 59 --~-~~~~~~~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~ 131 (249)
. .++++.+||+|||||++||+||+ .+|+++||||||++||+.++..+.+.|+++. +|.|+|++||+.+..+.
T Consensus 156 ~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 156 MGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNN 234 (251)
T ss_pred hHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHh
Confidence 2 24678999999999999999998 5789999999999999999999999999984 58999999999655667
Q ss_pred cCEEEEEe
Q psy4634 132 ANVVGLMR 139 (249)
Q Consensus 132 ~Dri~vl~ 139 (249)
||+++-+.
T Consensus 235 ~d~v~~~~ 242 (251)
T cd03273 235 ANVLFRTR 242 (251)
T ss_pred CCEEEEEE
Confidence 99998775
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=5e-21 Score=166.63 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=95.1
Q ss_pred CcEEEEeCCCCCCCC-CCHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc-
Q psy4634 9 TYIGFMPQETALFDE-FTIAETFQFYASLYRISSEEFR--AKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH- 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~-lTv~enl~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~- 83 (249)
+.+|++||++.+++. .|..|...+.. ..+....... ....++.+.+++.. .++++.+||||||||++|||||+.
T Consensus 98 r~ig~~~~~~~l~~~~~t~~ei~~~l~-~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~ 176 (243)
T cd03272 98 RTIGLKKDEYFLDKKNVTKNDVMNLLE-SAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQ 176 (243)
T ss_pred EEEECCCCEEEECCeEcCHHHHHHHHH-HcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHh
Confidence 448888888877763 56666555443 3344321100 00112334455553 577889999999999999999973
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEe
Q psy4634 84 ---TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR 139 (249)
Q Consensus 84 ---~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~ 139 (249)
+|+++||||||+||||.+++.+++.|+++++ ++|+|++||+.+....||++++|.
T Consensus 177 ~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 177 KCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred ccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEE
Confidence 6899999999999999999999999999865 788999999866555699999985
No 375
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.84 E-value=6e-21 Score=163.06 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=94.2
Q ss_pred CCcEEEEeCCC-----CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHH------HH
Q psy4634 8 STYIGFMPQET-----ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRR------VS 76 (249)
Q Consensus 8 ~~~Ig~v~Q~~-----~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQR------v~ 76 (249)
...|++++|++ .....+|++||+.+. +.. .+++.+ ++++++||+||+|| ++
T Consensus 70 ~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~------~~~----~~~~~~--------~~~~~~LS~G~~~~~~la~rla 131 (204)
T cd03240 70 RAQVKLAFENANGKKYTITRSLAILENVIFC------HQG----ESNWPL--------LDMRGRCSGGEKVLASLIIRLA 131 (204)
T ss_pred cEEEEEEEEeCCCCEEEEEEEhhHhhceeee------chH----HHHHHH--------hcCccccCccHHHHHHHHHHHH
Confidence 45799999987 334456888888653 111 122222 56789999999996 78
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeC
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAH-YFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~-~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
+|||++.+|++++|||||++||+..+. .+.+.|++++++ |.|+|++||+.+.+..||+++.|++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999999999999999999999999999 999999998776 8999999999998877999999864
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.84 E-value=1.8e-20 Score=160.82 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=94.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc---
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH--- 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~--- 83 (249)
...|++++|.+... .++..+ ++.+.++..+.+ .++..++.. .++++.+||+|||||+++|||++.
T Consensus 75 ~~~v~~~f~~~~~~--~~~~r~-------~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~ 143 (213)
T cd03279 75 TAEVSFTFQLGGKK--YRVERS-------RGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEV 143 (213)
T ss_pred cEEEEEEEEECCeE--EEEEEe-------cCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHH
Confidence 44588888876321 112111 144443333222 233444544 578889999999999999999985
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCE
Q psy4634 84 -------TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 84 -------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~ 142 (249)
+|+++||||||++||+.++..+.+.|++++++|.|+|++||+++.+.. ||+++++++|.
T Consensus 144 ~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 144 LQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred hhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 678999999999999999999999999987779999999999999976 99999999884
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=2.4e-22 Score=172.78 Aligned_cols=131 Identities=16% Similarity=0.191 Sum_probs=103.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh--------cCCCHHHHHH--HHHHHHHHcCCCC-CCCCcCcCChHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL--------YRISSEEFRA--KMKELQEVLDLPP-DHRTCSTLSGGQVRRVSI 77 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~--------~~~~~~~~~~--~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~i 77 (249)
+++|+++|+..+++.+|+.+++.++... ++...++... ...++++.+++++ .++++.+||+|||||++|
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~l 138 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSL 138 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHH
Confidence 5699999999999989999987766543 2222211110 1245667888876 677889999999999999
Q ss_pred HHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 78 AVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 78 ArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
|+|++. +|++++|||||+||||.++..+++.+++++ ++.|+|++||+.+..+.||++++|..
T Consensus 139 a~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 139 ALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999974 579999999999999999999999999975 46789999999654456999999964
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=4.9e-20 Score=194.43 Aligned_cols=132 Identities=27% Similarity=0.407 Sum_probs=107.8
Q ss_pred CCCCHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC--CEEEEe
Q psy4634 22 DEFTIAETFQFYASLYRIS------SEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP--SLVILD 91 (249)
Q Consensus 22 ~~lTv~enl~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P--~iLlLD 91 (249)
..|++.|-..|...+.... -+++..+++. +..+||.+ .++++.+|||||+||++||+||+.+| ++++||
T Consensus 425 ~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL~~-L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILD 503 (1809)
T PRK00635 425 QQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRLSI-LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILD 503 (1809)
T ss_pred hcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 4578888777765543100 1122233322 34678874 48899999999999999999999999 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEe------CCEEEEecChhHHHH
Q psy4634 92 EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR------KGVLLAEKSPEELIA 154 (249)
Q Consensus 92 EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~------~G~iv~~g~~~el~~ 154 (249)
|||+|||+..++.+.++|++++++|.|||+|+||++.++.||+|++|. +|+++.+|+++++..
T Consensus 504 EPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~ 572 (1809)
T PRK00635 504 EPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLA 572 (1809)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCCcccCCCEEEEecCHHHHhh
Confidence 999999999999999999999888999999999999666699999996 789999999998854
No 379
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=4.9e-20 Score=156.76 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=93.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHH----h
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTL----L 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL----~ 82 (249)
...|.+.+|...+++ | ... ...+..++++++. .. .++++++||+|||||++||+|+ +
T Consensus 68 ~~~i~~~~~~~~~~~------~--------~~~-~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~ 129 (198)
T cd03276 68 SAKITVTLKNQGLDA------N--------PLC-VLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEV 129 (198)
T ss_pred eEEEEEEEEcCCccC------C--------cCC-HHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcc
Confidence 345777787766554 1 111 1113456666665 43 5788999999999999999999 5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CcEEEEEecChhHHhccCEEEEEeCCE
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN---GQTIIITTHYIEEARQANVVGLMRKGV 142 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~---g~TiiivtH~l~~~~~~Dri~vl~~G~ 142 (249)
.+|+++||||||+|||+.++..+.+.|+++.++ +.||+++||+++++..+|+|.+|+.|+
T Consensus 130 ~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 130 MESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred cCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 899999999999999999999999999997543 468999999999998889999998753
No 380
>KOG0065|consensus
Probab=99.83 E-value=5.1e-21 Score=194.47 Aligned_cols=144 Identities=31% Similarity=0.428 Sum_probs=128.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCC-CCCCcCc----CChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYR---ISSEEFRAKMKELQEVLDLPP-DHRTCST----LSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~~----LSgGqkQRv~iAr 79 (249)
++.+|||.|+....+.+||+|-+.|.+.++. .+.++..+.++++++.++|++ ++.-++. ||..||+|+.||-
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGV 942 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEE
Confidence 5679999999988899999999999998873 567777789999999999986 6666665 9999999999999
Q ss_pred HHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH-H-hccCEEEEEe-CCEEEEecChhH
Q psy4634 80 TLLHTP-SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-A-RQANVVGLMR-KGVLLAEKSPEE 151 (249)
Q Consensus 80 AL~~~P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~-~-~~~Dri~vl~-~G~iv~~g~~~e 151 (249)
-|+.+| .||+|||||||||..+...+++.++++++.|+||+.+-|..+- + +..|++++|+ .|+.|..|+..+
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999 9999999999999999999999999999999999999999975 4 4599999997 568999888754
No 381
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.1e-20 Score=155.60 Aligned_cols=133 Identities=23% Similarity=0.267 Sum_probs=117.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.||||+|---..|..+..|-++-..--.+.+.+..+.++..++.+++++. ..-.+.++||||||||.|||+++-+=
T Consensus 92 r~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~ 171 (235)
T COG4778 92 RTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDY 171 (235)
T ss_pred HhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccC
Confidence 3468999997766677777888777776778999999999999999999986 57889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeC
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRK 140 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~ 140 (249)
+||||||||++||..+++.+.++|++-+..|..++=+-||-+.=+. |||++-+..
T Consensus 172 pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 172 PILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred ceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999977789999999999766555 999987753
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.82 E-value=1.1e-21 Score=162.15 Aligned_cols=143 Identities=23% Similarity=0.383 Sum_probs=122.1
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc---
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH--- 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~--- 83 (249)
++.-+|+.|+..-...|.|++++.+. .|.++....+.++...+++++ ..|.+++|||||.|||-+|...++
T Consensus 71 ArhRAYLsQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 71 ARHRAYLSQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HHHHHHHhhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecC
Confidence 45556887766544557899977653 244666777888889999987 589999999999999999988875
Q ss_pred --CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH-hccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 84 --TP--SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 84 --~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~-~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|| ++||+|||.++||...+..+-..|.++...|.||||++||++-- +.||++++++.|+++..|..+|+++.
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 44 79999999999999999999999999999999999999999975 66999999999999999999998764
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.81 E-value=7.6e-20 Score=170.73 Aligned_cols=146 Identities=21% Similarity=0.395 Sum_probs=128.1
Q ss_pred CCCCcEEEEeCCC---CCCCCCCHHHHHHHHHHhc------C-CCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHH
Q psy4634 6 LGSTYIGFMPQET---ALFDEFTIAETFQFYASLY------R-ISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVR 73 (249)
Q Consensus 6 ~~~~~Ig~v~Q~~---~l~~~lTv~enl~~~~~~~------~-~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQ 73 (249)
.....+||||++. .+-..+|+.||+.+..... + +.+.++.+.+.++++.++... ...+..+||||++|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 3456799999986 5778899999998754321 1 567788888999999999853 46678999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhH
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~e 151 (249)
|+-+||-|.++|++|+..+||-|||.-+.+.+.+.|.+.+++|+.|+++|-|++|+.. ||||++|.+|+++...++++
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999999999999999999999999999999899999999999999976 99999999999988777665
No 384
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.81 E-value=3.7e-19 Score=170.94 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=112.6
Q ss_pred CcEEEEeCCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 9 TYIGFMPQET-ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 9 ~~Ig~v~Q~~-~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
-++||.+|+. .+++..|+.|++.-... ... +..+...|..++++. ..++++.||||||.|+.+|+.++.+|
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~--~~~----e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFP--DGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCc--ccc----HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCC
Confidence 4699999987 45577799998874321 111 567788899999973 58899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEe-cChhHHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAE-KSPEELI 153 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~-g~~~el~ 153 (249)
.+|||||||+.||+.++..+-++|.++. -|||+||||-.++.. |++++.+.+ ++... |+.++..
T Consensus 459 NvLiLDEPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 459 NLLLLDEPTNHLDIESLEALEEALLDFE---GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999999999998873 599999999999987 999999998 55444 6655543
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=5.6e-19 Score=154.84 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=71.9
Q ss_pred CCcCcCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEE
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLLHT----PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGL 137 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~v 137 (249)
+++.+||+|||||++||+|++.+ |+++||||||+|||+..+..+.+.|++++++|.|+|++||+.+.+..||++++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~ 230 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVG 230 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEE
Confidence 34589999999999999999875 99999999999999999999999999987679999999999877777999988
Q ss_pred EeC
Q psy4634 138 MRK 140 (249)
Q Consensus 138 l~~ 140 (249)
|.+
T Consensus 231 ~~~ 233 (247)
T cd03275 231 VYR 233 (247)
T ss_pred EEe
Confidence 864
No 386
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.3e-19 Score=145.99 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=101.6
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
..-|+--.+.+=+.+|++||+.|+..+++... ...+.++++.+||.. .|.++++||-|||+||+|||-.+..+++.
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~---~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLW 152 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGN---AATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLW 152 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHhCCCc---hhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCce
Confidence 34456666777788999999999999877421 346778899999976 79999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
||||||++||......+-..+..-..+|--||.+||..--+
T Consensus 153 iLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 153 ILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred eecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999999999999999777888999999987554
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=3.4e-19 Score=151.45 Aligned_cols=150 Identities=21% Similarity=0.308 Sum_probs=119.7
Q ss_pred CCcEEEEeCCCC--CCCCCCHHHHHHHHHHh--c-CCCH---HHHHHHHHHHHHHcCCCC-C---CCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETA--LFDEFTIAETFQFYASL--Y-RISS---EEFRAKMKELQEVLDLPP-D---HRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~--l~~~lTv~enl~~~~~~--~-~~~~---~~~~~~~~~~l~~~~l~~-~---~~~~~~LSgGqkQRv 75 (249)
.+.|+++||+|. |.+.-+|...+.-.... + +-.+ ...++++-+++.++|+.+ + ..++.+|.-|+-|||
T Consensus 88 g~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKV 167 (330)
T COG4170 88 GHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKV 167 (330)
T ss_pred ccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceee
Confidence 456889999984 45544443333211111 1 1111 123566778999999953 3 677899999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHH
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~ 153 (249)
.||.|++.+|++||-||||+++||.++.+++++|.++.+. |.||++++||+..+.. ||+|-||..|+-++++..+++.
T Consensus 168 MIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 168 MIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247 (330)
T ss_pred eeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHh
Confidence 9999999999999999999999999999999999999765 9999999999999976 9999999999999999999988
Q ss_pred HhcC
Q psy4634 154 ASYG 157 (249)
Q Consensus 154 ~~~~ 157 (249)
+...
T Consensus 248 ~~Ph 251 (330)
T COG4170 248 TMPH 251 (330)
T ss_pred cCCC
Confidence 7644
No 388
>KOG0062|consensus
Probab=99.72 E-value=2.5e-17 Score=154.48 Aligned_cols=131 Identities=21% Similarity=0.296 Sum_probs=104.9
Q ss_pred CCCcEEEEeCCCCCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 7 GSTYIGFMPQETALFDEFTIAETFQFYASL-YRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 7 ~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+..+|+|-+|+..-+-.++|.. +.+.... -|.++++ +++.+..+|++ + ...++.+||||||-||++|.....
T Consensus 425 ~r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~~ee----~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 425 PRLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTEEE----IRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred ccceecchhHhhhhHHHHHhHH-HHHHHHhCCCCCHHH----HHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC
Confidence 3567899999765444445544 3333333 3555544 44557899997 3 556689999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEE
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLA 145 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~ 145 (249)
+|.+|+|||||+.||..+-..+-+.|+.+. -.||+||||.+.+.. |+.+++.++|++..
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNFN---GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhcC---CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999988862 469999999999987 99999999999865
No 389
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.71 E-value=6.3e-17 Score=135.57 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 67 LSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 67 LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.|.++.++|.|+|++||+.+.+..+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999987778999999999988877999999865
No 390
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.70 E-value=3.6e-17 Score=140.71 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCCCcCcCChHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEecChhHHhc-c
Q psy4634 60 DHRTCSTLSGGQVRRVSIAVTL----LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-G-QTIIITTHYIEEARQ-A 132 (249)
Q Consensus 60 ~~~~~~~LSgGqkQRv~iArAL----~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~TiiivtH~l~~~~~-~ 132 (249)
.+..+++||+|||||+.+|+++ +.+|+++|+||||+|||+.++..+++.|.++.++ | .|+|++||++.+... |
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 3556789999999998877554 5899999999999999999999999999998766 5 589999999987753 6
Q ss_pred C--EEEEEeCCEE
Q psy4634 133 N--VVGLMRKGVL 143 (249)
Q Consensus 133 D--ri~vl~~G~i 143 (249)
| +|++|++|+-
T Consensus 200 ~~~~v~~l~~g~~ 212 (213)
T cd03277 200 EKMTVLCVYNGPH 212 (213)
T ss_pred CceEEEEEecCcc
Confidence 5 7899998863
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=9.9e-17 Score=148.85 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=104.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.-+|+|=||--.--...||.+.+.-...-. ..... .-.++++-++|+. .++++.+|||||.|||+||.||.++++
T Consensus 400 ~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 400 DLKVSYKPQYISPDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred cceEeecceeecCCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccC
Confidence 357999999754444569999776433211 11111 2235677788876 689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEe
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMR 139 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~ 139 (249)
+++||||++-||.+.|-.+.+.|++...+ ++|.+++.||+-.+.. +||+++++
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999999999999999998765 8999999999999987 99999984
No 392
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.1e-15 Score=149.81 Aligned_cols=127 Identities=28% Similarity=0.438 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q psy4634 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGL 97 (249)
Q Consensus 23 ~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P---~iLlLDEPtsgL 97 (249)
+|||.|-..|+.. .+. +. +.-+.|..+||.. ..++..+|||||.||+=||.-|..+. -+++|||||+||
T Consensus 783 ~MTveEA~~FF~~---~p~--I~-rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 783 DMTVEEALEFFEA---IPK--IA-RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred hccHHHHHHHHhc---chH--HH-HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 3677776666543 221 22 3334566789975 47889999999999999999999888 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 98 D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
=+.-.+++++.|.+|...|.|||++.|+|+.++.||.|+=| +.|+|+++|+|+++.+.
T Consensus 857 H~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 857 HFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 99999999999999999999999999999999999999876 47799999999999874
No 393
>KOG0927|consensus
Probab=99.67 E-value=2.8e-16 Score=148.23 Aligned_cols=107 Identities=22% Similarity=0.341 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy4634 45 RAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122 (249)
Q Consensus 45 ~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiiv 122 (249)
+.++.+++.-+|.. + .++.+..||||++.|++|||+|..+|++|||||||++||+.+...+-+.|.++. ++ +++++
T Consensus 198 ~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~ 275 (614)
T KOG0927|consen 198 EAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIV 275 (614)
T ss_pred HHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEE
Confidence 33444445445543 3 578899999999999999999999999999999999999999999999998853 22 89999
Q ss_pred ecChhHHhc-cCEEEEEeCCE-EEEecChhHHH
Q psy4634 123 THYIEEARQ-ANVVGLMRKGV-LLAEKSPEELI 153 (249)
Q Consensus 123 tH~l~~~~~-~Dri~vl~~G~-iv~~g~~~el~ 153 (249)
+|.-+++.. |..|+-|++++ +..+|+-+...
T Consensus 276 sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 276 SHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred ecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 999999976 99999999999 56667776654
No 394
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.66 E-value=1.1e-16 Score=127.08 Aligned_cols=75 Identities=39% Similarity=0.676 Sum_probs=63.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCC----cCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRT----CSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~----~~~LSgGqkQRv~iArAL~ 82 (249)
.+.++|++|++.+++.+|++|| ...++++++++.+++.. .++. ..+||+|||||++||+||+
T Consensus 58 ~~~i~~~~~~~~~~~~~tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~ 124 (137)
T PF00005_consen 58 RRRIGYVPQDPQLFPGLTVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALL 124 (137)
T ss_dssp HHTEEEEESSHCHHTTSBHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHH
Confidence 4579999999999999999998 23445777788877643 3444 4999999999999999999
Q ss_pred cCCCEEEEeCCCC
Q psy4634 83 HTPSLVILDEPTS 95 (249)
Q Consensus 83 ~~P~iLlLDEPts 95 (249)
++|+++|||||||
T Consensus 125 ~~~~llllDEPt~ 137 (137)
T PF00005_consen 125 KNPKLLLLDEPTN 137 (137)
T ss_dssp TTSSEEEEESTTT
T ss_pred cCCCEEEEeCCCC
Confidence 9999999999997
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.66 E-value=2.8e-16 Score=145.92 Aligned_cols=93 Identities=29% Similarity=0.434 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 47 KMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 47 ~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
..+++.++++|.. .+|.+++||||+.||++||.|++++++++++|||+|-||...|-.+.+.|+++++.+++|++|.||
T Consensus 193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD 272 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech
Confidence 3567888999986 799999999999999999999999999999999999999999999999999998879999999999
Q ss_pred hhHHhc-cCEEEEEe
Q psy4634 126 IEEARQ-ANVVGLMR 139 (249)
Q Consensus 126 l~~~~~-~Dri~vl~ 139 (249)
|..+.. +|-|.++.
T Consensus 273 LavLD~lsD~vhI~Y 287 (591)
T COG1245 273 LAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHhhheeEEEe
Confidence 999986 99998885
No 396
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=3.6e-16 Score=139.28 Aligned_cols=79 Identities=24% Similarity=0.316 Sum_probs=70.5
Q ss_pred cCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEe
Q psy4634 64 CSTLSGGQVRRVSIAVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR 139 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~ 139 (249)
..+|||||+||+++|++++. +|++++|||||++||+..+..+.+.|+++.+ +.|+|++||+++....||++++|+
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 35699999999999997654 9999999999999999999999999999754 789999999998766699999998
Q ss_pred CCEE
Q psy4634 140 KGVL 143 (249)
Q Consensus 140 ~G~i 143 (249)
+|..
T Consensus 247 ~~~~ 250 (276)
T cd03241 247 KEVE 250 (276)
T ss_pred EecC
Confidence 8743
No 397
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.64 E-value=7.7e-16 Score=126.74 Aligned_cols=77 Identities=30% Similarity=0.347 Sum_probs=71.1
Q ss_pred cCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEe
Q psy4634 64 CSTLSGGQVRRVSIAVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR 139 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~ 139 (249)
..+||+||+||+++|++|+. +|+++|+|||++|+|+..+..+.+.+.++.++|.|+|++||+.+....+|+++.|+
T Consensus 75 ~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~ 154 (162)
T cd03227 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIK 154 (162)
T ss_pred eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEE
Confidence 35799999999999999987 78999999999999999999999999997656899999999999988899999986
Q ss_pred C
Q psy4634 140 K 140 (249)
Q Consensus 140 ~ 140 (249)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 5
No 398
>KOG0062|consensus
Probab=99.63 E-value=2.3e-16 Score=148.06 Aligned_cols=104 Identities=24% Similarity=0.333 Sum_probs=89.1
Q ss_pred HHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 48 MKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 48 ~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
..++|.-+|... ..+++++||||.|-|++|||||..+||||||||||+.||..+...+-+.|..+ +.|+|+||||
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD 254 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD 254 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc
Confidence 334778888864 57899999999999999999999999999999999999999999999998885 3799999999
Q ss_pred hhHHhc-cCEEEEEeCCEEE-EecChhHHHH
Q psy4634 126 IEEARQ-ANVVGLMRKGVLL-AEKSPEELIA 154 (249)
Q Consensus 126 l~~~~~-~Dri~vl~~G~iv-~~g~~~el~~ 154 (249)
-+++.. |..|+.+++-++- ..|+-++..+
T Consensus 255 r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 255 RNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 999987 9999999887763 2466666543
No 399
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=147.23 Aligned_cols=121 Identities=26% Similarity=0.316 Sum_probs=97.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-C---CCC---cCcCChHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-D---HRT---CSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~---~~~---~~~LSgGqkQRv~iArA 80 (249)
...+-|+||.|.+... |.+|.+.|+......++ +.+.++|..++|++ . ++. -..||+|||||+++||.
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCCCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence 4458899999998877 99999998765432343 44566677788754 1 111 26899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCE
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dr 134 (249)
|.++|++++|||.|++||+.++..+.+.+++-. .+.|||.|+|+-......++
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhh
Confidence 999999999999999999999999999998832 47999999999887765333
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.62 E-value=1e-15 Score=130.14 Aligned_cols=94 Identities=24% Similarity=0.194 Sum_probs=78.9
Q ss_pred HHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEecChhHH
Q psy4634 52 QEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFW-QYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 52 l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+..++..+ .++.++++|+||||+..+++++ .+|+++++|||++|||+..+..+. ..++++.+.|.|+|++||+.+..
T Consensus 76 ~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 76 FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELK 154 (200)
T ss_pred EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHH
Confidence 33445543 4667799999999999999884 899999999999999999999996 56788776799999999985444
Q ss_pred hccCEEEEEeCCEEEEe
Q psy4634 130 RQANVVGLMRKGVLLAE 146 (249)
Q Consensus 130 ~~~Dri~vl~~G~iv~~ 146 (249)
..||++..|++|++..+
T Consensus 155 ~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 155 AYAYKREGVENASMEFD 171 (200)
T ss_pred HHHhcCCCeEEEEEEEe
Confidence 55999999999999866
No 401
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=2.2e-15 Score=155.74 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=76.7
Q ss_pred CCCCcCcCChHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 60 DHRTCSTLSGGQVRRVSIAVTLLH----------TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 60 ~~~~~~~LSgGqkQRv~iArAL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
.++++++|||||++|++||+||+. +|++|||||||+|||+.+...++++|.++.+.|+||++|||+.+..
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 467889999999999999999986 8999999999999999999999999999987899999999999999
Q ss_pred hc-cCEEEEEeCC
Q psy4634 130 RQ-ANVVGLMRKG 141 (249)
Q Consensus 130 ~~-~Dri~vl~~G 141 (249)
.. ||+|.|++.|
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 76 9999999764
No 402
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.61 E-value=2.4e-15 Score=146.38 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=71.6
Q ss_pred CcCChHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 65 STLSGGQVRRVSIAVTLLHT----PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
+.|||||+||++||++++.. |+++|||||++|||+..+..+.+.|+++. +|.|||++||++..+..||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 57899999999999999985 69999999999999999999999999986 48999999999998877999999998
Q ss_pred CE
Q psy4634 141 GV 142 (249)
Q Consensus 141 G~ 142 (249)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 74
No 403
>KOG0065|consensus
Probab=99.60 E-value=1.5e-15 Score=155.13 Aligned_cols=147 Identities=24% Similarity=0.319 Sum_probs=125.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCC-------CHHHHHH-HHHHHHHHcCCCC-C-----CCCcCcCChHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRI-------SSEEFRA-KMKELQEVLDLPP-D-----HRTCSTLSGGQVR 73 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~-------~~~~~~~-~~~~~l~~~~l~~-~-----~~~~~~LSgGqkQ 73 (249)
++.++|.+|+...++.+||+|.+.|.++..+. ++.+... ..+.+++.+||++ + |+.++-.|||||+
T Consensus 188 ~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerK 267 (1391)
T KOG0065|consen 188 KKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERK 267 (1391)
T ss_pred CceEEeccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccc
Confidence 57799999999999999999999999886542 2222222 4567899999975 3 4445889999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhH-H-hccCEEEEEeCCEEEEecChh
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE-A-RQANVVGLMRKGVLLAEKSPE 150 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~-~-~~~Dri~vl~~G~iv~~g~~~ 150 (249)
||++|-+++.+|+++++||+|.|||-.+.-++.+.|+++++. +.|.+++-|..+. + ...|+|.+|.+|+++..|+.+
T Consensus 268 Rvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d 347 (1391)
T KOG0065|consen 268 RVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRD 347 (1391)
T ss_pred eeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHH
Confidence 999999999999999999999999999999999999999876 8899999998854 4 449999999999999999999
Q ss_pred HHHH
Q psy4634 151 ELIA 154 (249)
Q Consensus 151 el~~ 154 (249)
+...
T Consensus 348 ~~~~ 351 (1391)
T KOG0065|consen 348 EVLP 351 (1391)
T ss_pred HHHH
Confidence 8754
No 404
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.60 E-value=2.2e-15 Score=145.84 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=71.3
Q ss_pred CCcCcCChHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLL----------HTPSLVILDEPT-SGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~----------~~P~iLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
.++.+||||||||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ +|.|||++||+.+...
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~ 541 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQ 541 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchh
Confidence 356899999999999999988 599999999998 789999999999999997 5899999999977666
Q ss_pred ccCEEEEEeC-CEE
Q psy4634 131 QANVVGLMRK-GVL 143 (249)
Q Consensus 131 ~~Dri~vl~~-G~i 143 (249)
.||++++|++ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
No 405
>KOG0927|consensus
Probab=99.59 E-value=1.8e-15 Score=142.85 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy4634 43 EFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120 (249)
Q Consensus 43 ~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tii 120 (249)
...+.+..++.++||. + ...++++||+|||.||.+|+.++.+|.+|+|||||+|||..+...+-++|.++. -++|
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv 560 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVV 560 (614)
T ss_pred chHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Ccee
Confidence 3456678889999997 4 588899999999999999999999999999999999999999999999998862 4899
Q ss_pred EEecChhHHhc-cCEEEEEeCCEEEE-ecCh
Q psy4634 121 ITTHYIEEARQ-ANVVGLMRKGVLLA-EKSP 149 (249)
Q Consensus 121 ivtH~l~~~~~-~Dri~vl~~G~iv~-~g~~ 149 (249)
++|||.-.+.. +++|.+..+|.+.. .|+.
T Consensus 561 ~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 561 LVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred eeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 99999999976 99999999887754 3443
No 406
>PRK10869 recombination and repair protein; Provisional
Probab=99.54 E-value=2.6e-14 Score=138.77 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=70.2
Q ss_pred cCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCC
Q psy4634 66 TLSGGQVRRVSIAVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKG 141 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G 141 (249)
.|||||+||++||++++. +|+++|||||++|||+.+...+.+.|+++. ++.|||++||++..+..||+.+.++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 589999999999999997 689999999999999999999999999986 479999999999988779999999875
Q ss_pred E
Q psy4634 142 V 142 (249)
Q Consensus 142 ~ 142 (249)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 407
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.8e-13 Score=134.41 Aligned_cols=143 Identities=31% Similarity=0.473 Sum_probs=113.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCHHH---HHHHHHHHH------HHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC--CE
Q psy4634 21 FDEFTIAETFQFYASLYRISSEE---FRAKMKELQ------EVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP--SL 87 (249)
Q Consensus 21 ~~~lTv~enl~~~~~~~~~~~~~---~~~~~~~~l------~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P--~i 87 (249)
+..|++.+-..|...+. ++..+ .+..++++. -.+||+. .+|...+|||||.||+.||.-+-..= =+
T Consensus 426 ~~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl 504 (935)
T COG0178 426 ISEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 504 (935)
T ss_pred HhhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence 45678888888776553 22221 122223332 2468875 58999999999999999999998654 57
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHhcCCCcH
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIASYGVDSL 161 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~~~~~~l 161 (249)
++||||+.||=+.-...+.+.|++|++.|-|+|+|.||-+.++.||+|+=| +.|+|+++|++++++.+.. ++
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~--Sl 582 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPE--SL 582 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCc--ch
Confidence 899999999999999999999999998899999999999999999999865 6889999999999998643 45
Q ss_pred HHHHH
Q psy4634 162 EEVFL 166 (249)
Q Consensus 162 ~~~~~ 166 (249)
-..|.
T Consensus 583 TG~YL 587 (935)
T COG0178 583 TGQYL 587 (935)
T ss_pred hhHhh
Confidence 44554
No 408
>PRK03918 chromosome segregation protein; Provisional
Probab=99.53 E-value=2.6e-14 Score=145.12 Aligned_cols=80 Identities=29% Similarity=0.314 Sum_probs=71.2
Q ss_pred CCCcCcCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCE
Q psy4634 61 HRTCSTLSGGQVR------RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134 (249)
Q Consensus 61 ~~~~~~LSgGqkQ------Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dr 134 (249)
++++..|||||+| |+++|++++.+|+++||||||+|||+..+..+.++|..+.+.+.|||++||+.+....||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4678999999999 5556678889999999999999999999999999999987668899999999986666999
Q ss_pred EEEEeC
Q psy4634 135 VGLMRK 140 (249)
Q Consensus 135 i~vl~~ 140 (249)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
No 409
>PRK01156 chromosome segregation protein; Provisional
Probab=99.49 E-value=2.5e-13 Score=138.50 Aligned_cols=78 Identities=27% Similarity=0.296 Sum_probs=68.9
Q ss_pred CCcCcCChHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-cEEEEEecChhHHhcc
Q psy4634 62 RTCSTLSGGQVRRVSI------AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SN-G-QTIIITTHYIEEARQA 132 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~i------ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~TiiivtH~l~~~~~~ 132 (249)
.++..||||||+|++| |++++.+|++++|||||++||+..+..+.+++.... .. | .|+|++||+...+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 3578999999999975 599999999999999999999999999999998643 33 3 4899999999988779
Q ss_pred CEEEEEe
Q psy4634 133 NVVGLMR 139 (249)
Q Consensus 133 Dri~vl~ 139 (249)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
No 410
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.48 E-value=1.3e-13 Score=142.52 Aligned_cols=80 Identities=25% Similarity=0.267 Sum_probs=73.0
Q ss_pred CCCcCcCChHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLH--------TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ- 131 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~--------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~- 131 (249)
++++++|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||..+....
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 57899999999999999999996 899999999999999999999999999998789999999997777655
Q ss_pred cCEEEEEeC
Q psy4634 132 ANVVGLMRK 140 (249)
Q Consensus 132 ~Dri~vl~~ 140 (249)
..+|.|-+.
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 778888765
No 411
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=1.4e-13 Score=145.17 Aligned_cols=70 Identities=23% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCcCcCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCcEEEEEecChhHHh
Q psy4634 62 RTCSTLSGGQVR------RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-----SNGQTIIITTHYIEEAR 130 (249)
Q Consensus 62 ~~~~~LSgGqkQ------Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~g~TiiivtH~l~~~~ 130 (249)
...+.||||||| |++||+|++.+|++|+|||||+|||+.+...+.+.|.++. ..|.|||++||+++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345799999999 9999999999999999999999999999999999998873 23789999999999885
Q ss_pred c
Q psy4634 131 Q 131 (249)
Q Consensus 131 ~ 131 (249)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 3
No 412
>KOG0066|consensus
Probab=99.44 E-value=4.4e-13 Score=124.48 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=93.5
Q ss_pred cEEEEeCCCC--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-CC-CCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 10 YIGFMPQETA--LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-PD-HRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 10 ~Ig~v~Q~~~--l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~-~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
+||+.-|+.+ |-..-|..|++ .+.++++-.+. +..|..+||. +. .-.+..||||||-||++|---+..|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyL---qr~FNlpyq~A----RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYL---QRKFNLPYQEA----RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred eeechhhhhHHhhccccCHHHHH---HHhcCCChHHH----HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCC
Confidence 5888877653 33344666654 45567776543 4457889995 44 3457899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--cCEEEEEeCC
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ--ANVVGLMRKG 141 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~--~Dri~vl~~G 141 (249)
++|||||||++||+++...+-+.|.++. ..|||||||-..+.. |.-.++=++|
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRLi~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERLIVETDCNLWVVENQG 778 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEecccceeeecCceEEEEccCC
Confidence 9999999999999999999999999873 369999999999854 5544443343
No 413
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.42 E-value=2.8e-13 Score=140.12 Aligned_cols=78 Identities=24% Similarity=0.297 Sum_probs=69.9
Q ss_pred CCCcCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEE
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~ 136 (249)
+.++++||||||||++||++++ ++|+++||||||++||+.++..+.++|.++++ +.++|+|||+++.+..||+++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~~ 1162 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQLY 1162 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhHe
Confidence 5678999999999999999985 67899999999999999999999999999864 578999999999887799987
Q ss_pred EEe
Q psy4634 137 LMR 139 (249)
Q Consensus 137 vl~ 139 (249)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 653
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=2.5e-13 Score=117.62 Aligned_cols=96 Identities=18% Similarity=0.133 Sum_probs=76.1
Q ss_pred HHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CCcEEEE
Q psy4634 48 MKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTL--LHTPSLVILDEP---TSGLDPMLAHYFWQYLQRMSS-NGQTIII 121 (249)
Q Consensus 48 ~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL--~~~P~iLlLDEP---tsgLD~~~~~~i~~~L~~l~~-~g~Tiii 121 (249)
+++++..+++.+ ...+.+|.||+|+..+++++ +.+|+++||||| |+++|+.+... ..++.+.+ .|.|+|+
T Consensus 73 ~~~il~~~~l~d--~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vli 148 (222)
T cd03285 73 VDCILARVGASD--SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLF 148 (222)
T ss_pred cceeEeeecccc--chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEE
Confidence 344556666653 23578999999999999999 899999999999 99999998854 34455544 4899999
Q ss_pred EecChhHHh-ccCEEEEEeCCEEEEecC
Q psy4634 122 TTHYIEEAR-QANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 122 vtH~l~~~~-~~Dri~vl~~G~iv~~g~ 148 (249)
+||+ .++. .||++..+++|++...++
T Consensus 149 sTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 149 ATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred Eech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9996 6665 499999999999977653
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=5.5e-13 Score=118.47 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=65.3
Q ss_pred cCcCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-c-
Q psy4634 64 CSTLSGGQVRRVSIAVTLL---------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-A- 132 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~- 132 (249)
.+.+|+||||++++|++|+ .+|+++||||||++||+..+..+.+.++++. .+++++|+.+.+.. |
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchhc
Confidence 3568999999999999986 7999999999999999999999999998752 46777777777654 6
Q ss_pred --CEEEEEeCCEE
Q psy4634 133 --NVVGLMRKGVL 143 (249)
Q Consensus 133 --Dri~vl~~G~i 143 (249)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999986
No 416
>KOG0066|consensus
Probab=99.41 E-value=8.4e-14 Score=129.18 Aligned_cols=99 Identities=27% Similarity=0.358 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy4634 44 FRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121 (249)
Q Consensus 44 ~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiii 121 (249)
.+.+++++|.-+|.+. .+++...+|||.|-||++||||-.+|-+|+|||||+.||......+-+.|..++ +|.++
T Consensus 388 AEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLI 464 (807)
T KOG0066|consen 388 AEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLI 464 (807)
T ss_pred chhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEE
Confidence 3455667788888864 588999999999999999999999999999999999999999998888888874 69999
Q ss_pred EecChhHHhc-cCEEEEEeCCEEEE
Q psy4634 122 TTHYIEEARQ-ANVVGLMRKGVLLA 145 (249)
Q Consensus 122 vtH~l~~~~~-~Dri~vl~~G~iv~ 145 (249)
||||-.++.. |..|+.|++-++-.
T Consensus 465 VSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 465 VSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred EecccchHHHHHHHHhhhhhhhhhh
Confidence 9999999987 99999999887743
No 417
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.37 E-value=1.3e-12 Score=111.09 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=75.1
Q ss_pred CCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecChhHHhccCEEEEEe
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ-YLQRMSSNGQTIIITTHYIEEARQANVVGLMR 139 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~ 139 (249)
....+.+|++++| +..+.+++.+|+++||||||+|+|+..+..+.. +++.+.+.+.++|++||+.+.+..|+++..++
T Consensus 86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~ 164 (202)
T cd03243 86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVK 164 (202)
T ss_pred cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeE
Confidence 4556788888776 666678889999999999999999998887754 56766666899999999998888888999999
Q ss_pred CCEEEEecChhHH
Q psy4634 140 KGVLLAEKSPEEL 152 (249)
Q Consensus 140 ~G~iv~~g~~~el 152 (249)
+|++..+++..++
T Consensus 165 ~~~~~~~~~~~~~ 177 (202)
T cd03243 165 NLHMEELITTGGL 177 (202)
T ss_pred EEEEEEEecCCee
Confidence 9999887765443
No 418
>KOG0060|consensus
Probab=99.36 E-value=1.5e-12 Score=124.05 Aligned_cols=124 Identities=22% Similarity=0.222 Sum_probs=96.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHcCC----------CC-C-CCCcCcCChHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL-----YRISSEEFRAKMKELQEVLDL----------PP-D-HRTCSTLSGGQ 71 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~-----~~~~~~~~~~~~~~~l~~~~l----------~~-~-~~~~~~LSgGq 71 (249)
+.+-|+||.|-.... |.+|.+.|+..- .+.+.+ ++.+.|+.++| +. . ..=...||+||
T Consensus 501 ~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~----~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDE----DILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred CceEEecCCCCcccc-chhheeeccCccccccccCCCHH----HHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHH
Confidence 448999999986666 999999987321 122322 33333443333 21 1 22247899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 72 VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 72 kQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
|||+++||-+.++|++-+|||.||++|...+..+.+.+++ .|.|.|-|+|+-+.-+.-|.++-|+.
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999999999999999999999888776 48999999999999888899988865
No 419
>KOG2355|consensus
Probab=99.35 E-value=2e-12 Score=109.96 Aligned_cols=105 Identities=25% Similarity=0.405 Sum_probs=89.7
Q ss_pred HHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecC
Q psy4634 47 KMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHY 125 (249)
Q Consensus 47 ~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~ 125 (249)
|-+++++.++++.. =+++.+|-|||+||.|+..|++.=++|||||-|--||..+|..+++.+++-.++ |.||++.||.
T Consensus 129 Rre~LI~iLDIdl~-WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI 207 (291)
T KOG2355|consen 129 RREKLIDILDIDLR-WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI 207 (291)
T ss_pred Hhhhhhhheeccce-EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee
Confidence 33456777777642 246889999999999999999999999999999999999999999999987654 9999999999
Q ss_pred hhHHhc-cCEEEEEeCCEEEEecChhHH
Q psy4634 126 IEEARQ-ANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 126 l~~~~~-~Dri~vl~~G~iv~~g~~~el 152 (249)
.+-++. ...++.|++|+++..-..+++
T Consensus 208 FDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 208 FDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred ccchhhcchhEEEecCCeeeeccccchh
Confidence 998876 999999999999875444333
No 420
>PRK02224 chromosome segregation protein; Provisional
Probab=99.31 E-value=5e-12 Score=128.70 Aligned_cols=79 Identities=29% Similarity=0.319 Sum_probs=69.7
Q ss_pred CcCcCChHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEecChhHH
Q psy4634 63 TCSTLSGGQVR------RVSIAVTLLHT-----P-SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHYIEEA 129 (249)
Q Consensus 63 ~~~~LSgGqkQ------Rv~iArAL~~~-----P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-TiiivtH~l~~~ 129 (249)
.+.+||||||+ |+++|++++.+ | +++||||||++||+..+..+.++|..+...|. +||++||+.+.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 36799999999 99999999864 3 67999999999999999999999999876564 899999999998
Q ss_pred hccCEEEEEeCC
Q psy4634 130 RQANVVGLMRKG 141 (249)
Q Consensus 130 ~~~Dri~vl~~G 141 (249)
..||+++.+.+.
T Consensus 858 ~~ad~~~~~~~~ 869 (880)
T PRK02224 858 GAADDLVRVEKD 869 (880)
T ss_pred HhcCeeEEeecC
Confidence 779999999654
No 421
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.30 E-value=5.5e-12 Score=130.92 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=70.0
Q ss_pred CCCcCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEE
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~ 136 (249)
.+++.+||||||++++||++++. +|++++||||+++||+.++..+.++|.++.. +.++|++||+...+..||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcceeE
Confidence 45568999999999999999985 7899999999999999999999999999754 578999999998777799998
Q ss_pred EEeC
Q psy4634 137 LMRK 140 (249)
Q Consensus 137 vl~~ 140 (249)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7753
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.29 E-value=9.1e-12 Score=115.18 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=68.2
Q ss_pred CcCcCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--
Q psy4634 63 TCSTLSGGQVRRVSIAVTLL---------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-- 131 (249)
Q Consensus 63 ~~~~LSgGqkQRv~iArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-- 131 (249)
....+|.||||++++|++|+ .+|+++|||||+++||+..+..+.+.+.++ +..++++||+.+.+..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLL 346 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhh
Confidence 34789999999999999996 799999999999999999999999988764 3589999999887643
Q ss_pred -cCEEEEEeCCEE
Q psy4634 132 -ANVVGLMRKGVL 143 (249)
Q Consensus 132 -~Dri~vl~~G~i 143 (249)
+++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 458999999987
No 423
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.28 E-value=2.5e-12 Score=108.08 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=66.2
Q ss_pred HHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEecCh
Q psy4634 50 ELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYF-WQYLQRMSSN-GQTIIITTHYI 126 (249)
Q Consensus 50 ~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~~l~~~-g~TiiivtH~l 126 (249)
+++..++..+ .++..+++|+|++|...+.+. +.+|+++|+|||++|+||.....+ ..+++.+.++ |.++|++||+.
T Consensus 44 ~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 44 RIFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred eEEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 4445566654 566788999998874433332 349999999999999999987776 5566777664 89999999999
Q ss_pred hHHhccCEEEEEeCCEE
Q psy4634 127 EEARQANVVGLMRKGVL 143 (249)
Q Consensus 127 ~~~~~~Dri~vl~~G~i 143 (249)
+....||+---++++++
T Consensus 123 ~l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 123 ELTKLADEHPGVRNLHM 139 (185)
T ss_pred HHHHHhhcCccceEEEE
Confidence 65455764333344443
No 424
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.23 E-value=2.2e-11 Score=103.76 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=75.2
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEe
Q psy4634 12 GFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILD 91 (249)
Q Consensus 12 g~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLD 91 (249)
++++|...+|..+|+.||+.++...+ ..+. +++.++++.+++ .+|+++|+|
T Consensus 62 ~~~~q~~~l~~~~~~~d~l~~~~s~~---~~e~-~~~~~iL~~~~~-------------------------~~p~llllD 112 (199)
T cd03283 62 SFELPPVKIFTSIRVSDDLRDGISYF---YAEL-RRLKEIVEKAKK-------------------------GEPVLFLLD 112 (199)
T ss_pred ccCcccceEEEeccchhccccccChH---HHHH-HHHHHHHHhccC-------------------------CCCeEEEEe
Confidence 36677667888899999998754321 2333 557777777662 799999999
Q ss_pred CCCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEecChhHHhc---cCEEEEEe
Q psy4634 92 EPTSGLDPMLAHYFW-QYLQRMSSNGQTIIITTHYIEEARQ---ANVVGLMR 139 (249)
Q Consensus 92 EPtsgLD~~~~~~i~-~~L~~l~~~g~TiiivtH~l~~~~~---~Dri~vl~ 139 (249)
||++|+|+..+..+. .+++++.+.|.|+|++||+++.+.. .++|-.++
T Consensus 113 Ep~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~~ 164 (199)
T cd03283 113 EIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNYH 164 (199)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEEE
Confidence 999999999998765 5788887779999999999998753 45555543
No 425
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.17 E-value=3.1e-11 Score=111.01 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCCC----CCCC--cCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCc
Q psy4634 45 RAKMKELQEVLDLPP----DHRT--CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQ 117 (249)
Q Consensus 45 ~~~~~~~l~~~~l~~----~~~~--~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~ 117 (249)
.+.++..++++.+.+ .+.. .-.||.|||+|+++-.|++-+-+|+++||=.+-.||.-|+.+...+.- +++.|+
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 455666777766642 2333 468999999999999999999999999999999999999999988765 566699
Q ss_pred EEEEEecChhHHhccCEEEEEeCCEEEEe
Q psy4634 118 TIIITTHYIEEARQANVVGLMRKGVLLAE 146 (249)
Q Consensus 118 TiiivtH~l~~~~~~Dri~vl~~G~iv~~ 146 (249)
||+.+|||=.-...|||++-|++|++++.
T Consensus 501 TI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 501 TIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred eEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 99999999888888999999999999754
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=1.8e-10 Score=98.63 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=65.3
Q ss_pred HHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEecCh
Q psy4634 49 KELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYF-WQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 49 ~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~~l~~~g~TiiivtH~l 126 (249)
+++...++..+ .++..+++|+||+|+ ..+.+++.+|+++|||||++|+||.....+ ..+++.+.+.|.++|++||+.
T Consensus 73 d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 73 NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 34455566654 466788999999975 566678899999999999999999776664 556777777799999999999
Q ss_pred hHHhc
Q psy4634 127 EEARQ 131 (249)
Q Consensus 127 ~~~~~ 131 (249)
+.++.
T Consensus 152 ~l~~~ 156 (204)
T cd03282 152 DIAAI 156 (204)
T ss_pred HHHHH
Confidence 98864
No 427
>KOG0063|consensus
Probab=99.09 E-value=2.7e-10 Score=105.71 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=101.2
Q ss_pred CCCCCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 5 SLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 5 ~~~~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
+.|.-.++|=||...-=..-||++.+.--.+-.-+. .+-+.++++-+.+++ .+..+.+||||++|||++|.+|-.
T Consensus 398 e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGK 473 (592)
T KOG0063|consen 398 EIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGK 473 (592)
T ss_pred cccccceeccccccCccccchHHHHHHHHhHhhhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCC
Confidence 344557899999765434458888654222211111 123445666667766 688899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEecChhHHhc-cCEEEEEe
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEEARQ-ANVVGLMR 139 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l-~~~g~TiiivtH~l~~~~~-~Dri~vl~ 139 (249)
.+++++.|||.+-||-++|..--..+++. ...++|-.+|.||+-.+.. +||+++.+
T Consensus 474 pAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 474 PADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred CCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 99999999999999999999988888885 3457999999999999976 99999885
No 428
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=2.1e-10 Score=106.36 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=58.0
Q ss_pred CcCChHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 65 STLSGGQVRRVSIAVTLLH---------TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~---------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
..+|.||||++.||.+|+. +|++||||||+++||+..+..+++.|.+. |.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 5889999999999999999 99999999999999999999999999763 679999999987653
No 429
>KOG0064|consensus
Probab=99.07 E-value=1.2e-10 Score=110.28 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=84.7
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHcCCCC-CC---------CCcCcCChHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASL-----YRISSEEFRAKMKELQEVLDLPP-DH---------RTCSTLSGGQVRR 74 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~-~~---------~~~~~LSgGqkQR 74 (249)
+|.|+||.|..- .-|.+|.+-|+-.. ++.++++.. .+|..+.|++ .. +=-..||||+|||
T Consensus 546 ~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~----~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR 620 (728)
T KOG0064|consen 546 NIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLE----AILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR 620 (728)
T ss_pred ceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHH----HHHHHhhHHHHHHhccChhhhccHHhhccchHHHH
Confidence 499999999754 34788887664321 244444433 3334333322 11 1125799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc
Q psy4634 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ 131 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~ 131 (249)
+++||.+-|+|+.-+|||.||+.-+..+..+.+..++ .|.+.+-+||+.+....
T Consensus 621 ~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 621 MGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY 674 (728)
T ss_pred HHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence 9999999999999999999999999999998887766 48999999999987754
No 430
>KOG0063|consensus
Probab=99.04 E-value=2.6e-10 Score=105.81 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 47 KMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 47 ~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
...++++.+.|.. .+|-+.+||||+-||.+||.+.+++.++.++|||.+-||...+..-...|+.+..-..-||+|.||
T Consensus 193 ~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHD 272 (592)
T KOG0063|consen 193 NKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHD 272 (592)
T ss_pred cHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence 3456677777876 678889999999999999999999999999999999999999999999999998778999999999
Q ss_pred hhHHhc-cCEEEEEe
Q psy4634 126 IEEARQ-ANVVGLMR 139 (249)
Q Consensus 126 l~~~~~-~Dri~vl~ 139 (249)
++.+.. .|-|.++.
T Consensus 273 LsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 273 LSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhcceeEEe
Confidence 999986 88888875
No 431
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.04 E-value=8.3e-10 Score=113.12 Aligned_cols=80 Identities=34% Similarity=0.402 Sum_probs=71.8
Q ss_pred CCcCcCChHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccC
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLL------HT--PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQAN 133 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~------~~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~D 133 (249)
+++++||||++=.++||.+|+ .+ -+.|+|||||..||+.+...+.++|.++...|.+|++|||+-+....+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 678999999999888887776 45 6999999999999999999999999999888999999999988888899
Q ss_pred EEEEEeCC
Q psy4634 134 VVGLMRKG 141 (249)
Q Consensus 134 ri~vl~~G 141 (249)
.++.++..
T Consensus 891 ~~i~V~k~ 898 (908)
T COG0419 891 VRIRVKKD 898 (908)
T ss_pred eEEEEEec
Confidence 88887643
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.98 E-value=7.1e-09 Score=88.81 Aligned_cols=87 Identities=29% Similarity=0.368 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy4634 46 AKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121 (249)
Q Consensus 46 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiii 121 (249)
+.+.+.+...++.. ..||||||..++||--|+ .++++++||||.++||+..+..+.++|+++.+ +.-+|+
T Consensus 121 ~~~~~~l~~~~i~~-----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii 194 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFII 194 (220)
T ss_dssp HHHHHHHHCTTTTT-----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEE
T ss_pred cccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 34445555544432 289999999999997664 57799999999999999999999999999754 477999
Q ss_pred EecChhHHhccCEEEEE
Q psy4634 122 TTHYIEEARQANVVGLM 138 (249)
Q Consensus 122 vtH~l~~~~~~Dri~vl 138 (249)
+||+-.....||+.+.+
T Consensus 195 ~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 195 TTHNPEMFEDADKLIGV 211 (220)
T ss_dssp E-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccc
Confidence 99998888888886654
No 433
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.98 E-value=1.9e-09 Score=99.91 Aligned_cols=98 Identities=26% Similarity=0.326 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCCC---CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE
Q psy4634 47 KMKELQEVLDLPP---DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIIT 122 (249)
Q Consensus 47 ~~~~~l~~~~l~~---~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~Tiiiv 122 (249)
.+.+++++.|+.+ ..++.++||-|||.|+.||++++..|.+++.||-.|.||+.+...+..-|.+++++ |.|.+++
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivv 564 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4557889999975 36678999999999999999999999999999999999999999999999999876 9999999
Q ss_pred ecChhHHhc--cCEEEEEeCCEEE
Q psy4634 123 THYIEEARQ--ANVVGLMRKGVLL 144 (249)
Q Consensus 123 tH~l~~~~~--~Dri~vl~~G~iv 144 (249)
||+.+.... -|+++...-|+..
T Consensus 565 ThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 565 THRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred ecCHHHHhccCCceeEEeeccccc
Confidence 999999853 7999988777654
No 434
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.97 E-value=9.4e-10 Score=116.57 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=56.5
Q ss_pred CCCcCcCChHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh
Q psy4634 61 HRTCSTLSGGQVRRVS----IAVT--------LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~----iArA--------L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~ 127 (249)
++..++||||||||++ +|++ +.++|++++|||||+|||+.++..+++++.++ |.++||+||.+.
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSEREW 1317 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccchh
Confidence 4446899999999996 5655 56899999999999999999999999999887 789999999874
No 435
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.93 E-value=1e-09 Score=94.68 Aligned_cols=87 Identities=24% Similarity=0.343 Sum_probs=64.0
Q ss_pred CcCChHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCE
Q psy4634 65 STLSGGQVRR----VSIAVTL--LHTPSLVILDEP---TSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANV 134 (249)
Q Consensus 65 ~~LSgGqkQR----v~iArAL--~~~P~iLlLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dr 134 (249)
.++|.|+.+. ..+++++ +.+|+++||||| |+++|+.+. ...+++.+.+. +.|+|++||+.+....+|+
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~ 161 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHELTELEGK 161 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhhc
Confidence 5677887664 3466665 469999999999 888887652 34455556555 8999999999765556888
Q ss_pred EEEEeCCEEEEecChhHHH
Q psy4634 135 VGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 135 i~vl~~G~iv~~g~~~el~ 153 (249)
+..+++|++...++.+++.
T Consensus 162 ~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 162 LPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred CCCeEEEEEEEEeeCCeEE
Confidence 7777889888777666653
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.92 E-value=3.6e-09 Score=87.81 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=67.6
Q ss_pred CCCCcCcCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEecChhH--
Q psy4634 60 DHRTCSTLSGGQVR------RVSIAVTLLHTPSLVILDEPTSGLD---PMLAHYFWQYLQRMSSNGQTIIITTHYIEE-- 128 (249)
Q Consensus 60 ~~~~~~~LSgGqkQ------Rv~iArAL~~~P~iLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~TiiivtH~l~~-- 128 (249)
.+..+..+|+|++| +...+.+...+|+++++|||++.+| +..+..+.+.++.+++.|.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 35667889999998 5555666778999999999999999 888888999999988889999999998764
Q ss_pred -------Hhc-cCEEEEEe
Q psy4634 129 -------ARQ-ANVVGLMR 139 (249)
Q Consensus 129 -------~~~-~Dri~vl~ 139 (249)
+.. ||.|+.|+
T Consensus 145 ~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cccCcCceeEeeeEEEEEE
Confidence 555 89998887
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.91 E-value=2.5e-09 Score=107.83 Aligned_cols=77 Identities=32% Similarity=0.350 Sum_probs=64.9
Q ss_pred CCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecChhHHhc-cCEEEEE
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ-YLQRMSSNGQTIIITTHYIEEARQ-ANVVGLM 138 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl 138 (249)
.+.++++|+||+|++.|++++ .+|.++|||||++|+||.....+.. ++..+.+.|.++|++||+.+.... +++..++
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~ 463 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVE 463 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeE
Confidence 445688999999999999998 8999999999999999999998865 566776679999999999888765 5654443
No 438
>PRK14079 recF recombination protein F; Provisional
Probab=98.88 E-value=5.3e-09 Score=96.42 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=61.2
Q ss_pred CcCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEE
Q psy4634 65 STLSGGQVRRVSIAVTLL---------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV 135 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri 135 (249)
.-+|+|||+++.+|..|+ .+|+++|||||+++||+..+..+.+.|.+.. .++|-+| +....||++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t---~~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGT---EAPPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcC---CCCCCCceE
Confidence 577999999999999999 8999999999999999999999998886532 2333333 222349999
Q ss_pred EEEeCCEEEEe
Q psy4634 136 GLMRKGVLLAE 146 (249)
Q Consensus 136 ~vl~~G~iv~~ 146 (249)
+.+.+|++.-+
T Consensus 336 ~~~~~~~~~~~ 346 (349)
T PRK14079 336 LRIEAGVFTPE 346 (349)
T ss_pred EEEeccEecCC
Confidence 99999987543
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.78 E-value=2.7e-08 Score=83.72 Aligned_cols=66 Identities=32% Similarity=0.440 Sum_probs=54.8
Q ss_pred cCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 64 CSTLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
..++|.|+||.+.++.++...+ .++++|||-++|.|..++.+.+.|.+..+.+.-+|++||....+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 4677999999999999888777 89999999999999999999999988765578999999987653
No 440
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.76 E-value=2.8e-08 Score=85.49 Aligned_cols=67 Identities=25% Similarity=0.264 Sum_probs=54.8
Q ss_pred CcCC--hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC---CcEEEEEecChhHHhc
Q psy4634 65 STLS--GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAH-YFWQYLQRMSSN---GQTIIITTHYIEEARQ 131 (249)
Q Consensus 65 ~~LS--gGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~-~i~~~L~~l~~~---g~TiiivtH~l~~~~~ 131 (249)
..+| .-+.||+++|++++.+|+++|||||++|+|+.... .+..+++++.+. +.++|++||+.+.+..
T Consensus 87 ~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 87 SGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred hccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 3445 45689999999999999999999999999997654 456788888654 3589999999998864
No 441
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.68 E-value=3.7e-08 Score=99.25 Aligned_cols=68 Identities=29% Similarity=0.355 Sum_probs=60.0
Q ss_pred CCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEecChhHH
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYF-WQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
...++++|+||++++.+++++ .+|.++|||||++|+||.....+ ..++..+.+.|.++|++||+.+..
T Consensus 380 ~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 380 EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 445689999999999998877 78999999999999999999998 567788777799999999998764
No 442
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.65 E-value=5.4e-08 Score=72.67 Aligned_cols=51 Identities=31% Similarity=0.448 Sum_probs=39.5
Q ss_pred CCCcCcCChHHHH-HHHHHHHHh------c------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4634 61 HRTCSTLSGGQVR-RVSIAVTLL------H------TPSLVILDEPTSGLDPMLAHYFWQYLQR 111 (249)
Q Consensus 61 ~~~~~~LSgGqkQ-Rv~iArAL~------~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 111 (249)
.+..+++|||||| .+.+|.+++ . .|++++|||||++||+.....+++++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3567999999994 444444333 3 3799999999999999999999999875
No 443
>PRK13695 putative NTPase; Provisional
Probab=98.59 E-value=8.5e-08 Score=79.44 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=64.6
Q ss_pred CCcCcCChHHHHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEe
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEP--TSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR 139 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~ 139 (249)
++...+||+++-+..+++..+.+|+++++||| +.++|+. +.+.+.++.+.|+++|+++|+-.....+|+|..+.
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~ 149 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRP 149 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccC
Confidence 44567999999999999999999999999994 4455544 45666665556899999999954445599999999
Q ss_pred CCEEEEe
Q psy4634 140 KGVLLAE 146 (249)
Q Consensus 140 ~G~iv~~ 146 (249)
+|+|+.-
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9999654
No 444
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.55 E-value=9.4e-08 Score=81.55 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=45.1
Q ss_pred CcCChH--HHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy4634 65 STLSGG--QVRRVSIAVTLLHTPSLVILDEPT-----SGLDPMLAHYFWQYLQRMSS 114 (249)
Q Consensus 65 ~~LSgG--qkQRv~iArAL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~L~~l~~ 114 (249)
+..||+ +++++.||++++++|+++++|||| +||||.+++.+.+.++++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 444555 899999999999999999999999 99999999999999999854
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.52 E-value=1.8e-07 Score=94.98 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=60.6
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh----------ccCEEEEEeCCEEEEecCh
Q psy4634 82 LHTPSLVILDEPTSGL-DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR----------QANVVGLMRKGVLLAEKSP 149 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~----------~~Dri~vl~~G~iv~~g~~ 149 (249)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++.+. .|++.++|.+|++...++.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999998888999999999998873 4999999999998665543
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=5.9e-08 Score=85.55 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=66.5
Q ss_pred CcCChHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEecChhHHhccCEE
Q psy4634 65 STLSGGQ--------VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHY-FWQYLQRMSSNGQTIIITTHYIEEARQANVV 135 (249)
Q Consensus 65 ~~LSgGq--------kQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~-i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri 135 (249)
..+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.||++.+....|.|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI 203 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAI 203 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeE
Confidence 4579999 9999999999999999999 999999766554 54 566655688999999999999999999
Q ss_pred EEEeCCEEE
Q psy4634 136 GLMRKGVLL 144 (249)
Q Consensus 136 ~vl~~G~iv 144 (249)
.+|+.|.+.
T Consensus 204 ~vl~s~sr~ 212 (249)
T cd01128 204 DILKSGTRK 212 (249)
T ss_pred EEcCCCCcc
Confidence 999999983
No 447
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.33 E-value=1.5e-06 Score=77.49 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH--H-----------hc-c
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE--A-----------RQ-A 132 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~--~-----------~~-~ 132 (249)
|.+=.|..-..+.+.+++|+++++|||++ ...+..+++.+ ++|.|+|++||+.+. + .. +
T Consensus 177 ~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 177 LDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAF 249 (270)
T ss_pred cccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCce
Confidence 33333444445555558999999999974 34455555554 469999999997654 4 23 8
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q psy4634 133 NVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 133 Dri~vl~~G~iv~~g~~~el~ 153 (249)
||+++|++|+ ..|+++++.
T Consensus 250 ~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 250 ERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred EEEEEEecCC--CCCceeecc
Confidence 9999999887 567776653
No 448
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.20 E-value=7e-06 Score=71.01 Aligned_cols=61 Identities=20% Similarity=0.188 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CcEEEEEecChhHHhc
Q psy4634 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY-LQRMSSN-GQTIIITTHYIEEARQ 131 (249)
Q Consensus 71 qkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~-g~TiiivtH~l~~~~~ 131 (249)
+-+++.-....+.+|+++|||||++|+|+.....+... ++.+.+. +.++|++||+.+.+..
T Consensus 96 e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 96 ELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 45555555555689999999999999999999988888 6777665 8999999999998754
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.06 E-value=6.5e-06 Score=71.69 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHH----------------HHhcCCCEEEEeCCCC------C
Q psy4634 40 SSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAV----------------TLLHTPSLVILDEPTS------G 96 (249)
Q Consensus 40 ~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iAr----------------AL~~~P~iLlLDEPts------g 96 (249)
+..+..+++..+...+++.. .++... .+|+.|++.+++ ...++|+++++| |++ .
T Consensus 52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~ 128 (239)
T cd01125 52 PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSE 128 (239)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCc
Confidence 45667788888887777644 233322 266777776654 446899999999 765 4
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEEecChh
Q psy4634 97 LDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127 (249)
Q Consensus 97 LD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~ 127 (249)
+|+.....+++.|.+++++ |.||++++|...
T Consensus 129 ~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 129 NDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 7999999999999998765 999999999863
No 450
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.04 E-value=1.4e-05 Score=69.49 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=46.7
Q ss_pred cCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 66 TLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGL----DPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgL----D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.+|+++.++-.+.+.+- .+|+++++||||+++ |+...+.+.+.+++++++|.|++++ |+...
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~~ 164 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPKE 164 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-ecccc
Confidence 46777666655554443 369999999999999 8888899999999987778876664 55443
No 451
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.01 E-value=2.5e-05 Score=67.77 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEecChhHHh
Q psy4634 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYF-WQYLQRMSSN-GQTIIITTHYIEEAR 130 (249)
Q Consensus 71 qkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~~l~~~-g~TiiivtH~l~~~~ 130 (249)
+-+++.-+..-+.+|.++|||||.+|.|+.....+ +.+++.+.+. +.|+|++||+.+...
T Consensus 97 e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 97 ELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 45555555556679999999999999998777764 6677777766 899999999998764
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.00 E-value=3.2e-05 Score=66.98 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHHhc--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 66 TLSGGQVRRVSIAVTLLH--TPSLVILDEPTSG---LDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~--~P~iLlLDEPtsg---LD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
..|.++++.+..++..+. +|+++++||||+. .|+.....+.+.++.++++|.|+++++|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 457899999999999997 9999999999964 55555556666677667779999999997654
No 453
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=97.86 E-value=3.4e-05 Score=78.96 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=50.2
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGL-DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 678889999999999999999 799999999999998888999999999999875
No 454
>KOG0964|consensus
Probab=97.78 E-value=1.4e-05 Score=80.41 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=64.6
Q ss_pred cCcCChHHHHHHHHHHHHhc---C-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE
Q psy4634 64 CSTLSGGQVRRVSIAVTLLH---T-PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM 138 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~---~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl 138 (249)
+.+||||||--||||..++- + ++.+|+||--++||+..|..+-.+|++|+.. .-.|.+|-+.+.+..||+++-.
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRpEll~vAdKfygV 1172 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRPELLSVADKFYGV 1172 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccHHHHHHHHhhhce
Confidence 35999999999999998873 4 4999999999999999999999999999764 5688888898888889987644
No 455
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.76 E-value=4.6e-05 Score=75.80 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=45.9
Q ss_pred CcCcCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEecChhH
Q psy4634 63 TCSTLSGGQVRRVSIAVTLL------HTPSLVILDEPTSGLDPMLAHYFWQ-YLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 63 ~~~~LSgGqkQRv~iArAL~------~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~TiiivtH~l~~ 128 (249)
++..|||||||-+++|-.++ .+.++ ++|||++.||+..+..+.+ .+.++ +.-||+.|||-+.
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e~ 616 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEEV 616 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHhh
Confidence 45789999999976665444 34666 4699999999999999875 66653 3457777787643
No 456
>PF13175 AAA_15: AAA ATPase domain
Probab=97.75 E-value=8.4e-05 Score=68.76 Aligned_cols=66 Identities=27% Similarity=0.416 Sum_probs=55.8
Q ss_pred CcCcCChHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhH
Q psy4634 63 TCSTLSGGQVRRVSIAVTLL------HT-PS---LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEE 128 (249)
Q Consensus 63 ~~~~LSgGqkQRv~iArAL~------~~-P~---iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~ 128 (249)
++.++|.|.||.+.++..+. .+ +. ++++|||=+.|-|..++.+.+.|.++.+ .+..||++||....
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 56899999999888777653 12 22 9999999999999999999999999876 48899999998653
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.75 E-value=0.00015 Score=57.64 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=50.8
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTS----------GLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
...+.+..++...+++...+|+++++|||++ +.|....+.+.+++....+.+.|+++++|..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 3445667778889999999999999999994 5555666777777766555699999999987544
No 458
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.70 E-value=0.0001 Score=69.97 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=66.1
Q ss_pred CcCChHHHHHHHHH-----HHHh--cCCCEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CC
Q psy4634 65 STLSGGQVRRVSIA-----VTLL--HTPSLVILD-----------------EP--TSGLDPMLAHYFWQYLQRMSS--NG 116 (249)
Q Consensus 65 ~~LSgGqkQRv~iA-----rAL~--~~P~iLlLD-----------------EP--tsgLD~~~~~~i~~~L~~l~~--~g 116 (249)
++-|-++|-|.+.+ --+. .+-=++++| || |+|+||.....+.+++.++.. +|
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 45567777665532 2221 233456677 76 789999999999999999863 58
Q ss_pred c-----EEEEEecChhHHhccCEEEEEeCCEEEEecChhH
Q psy4634 117 Q-----TIIITTHYIEEARQANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 117 ~-----TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~e 151 (249)
. ||++.+||+++ ..||++.++.+|+|+.+++..+
T Consensus 302 sIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 302 SITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred CeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 5 99999999995 4599999999999999998765
No 459
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.64 E-value=0.00031 Score=59.50 Aligned_cols=82 Identities=21% Similarity=0.246 Sum_probs=68.5
Q ss_pred CCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEe
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMR 139 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~ 139 (249)
.+..+..|.|+-=---+.+.+ ++--+++||||-++|-|.-+-.+...|+++++.|.-+||.||..=.... .-+|+-++
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 455678899997666666665 4568999999999999999999999999999999999999998877665 67788887
Q ss_pred CCEE
Q psy4634 140 KGVL 143 (249)
Q Consensus 140 ~G~i 143 (249)
.+-+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 7654
No 460
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.63 E-value=0.0001 Score=77.89 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=64.0
Q ss_pred CCcCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEE
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV 135 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri 135 (249)
+.++.||||||--.+||--++ +..++.+|||-=++||..+...+.++|+++. .+.=.|+|||.-.....||++
T Consensus 1062 ~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~~m~~ad~l 1138 (1163)
T COG1196 1062 QSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKGTMEAADRL 1138 (1163)
T ss_pred cchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChHHHHHHHHH
Confidence 345789999999999998877 4669999999999999999999999999976 566799999999998877764
No 461
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.53 E-value=0.00045 Score=62.63 Aligned_cols=73 Identities=27% Similarity=0.437 Sum_probs=62.9
Q ss_pred CcCChHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--cCEEEEE
Q psy4634 65 STLSGGQVRRVSIAVTLLH--TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ--ANVVGLM 138 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~--~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~--~Dri~vl 138 (249)
.+||-|+.+-+++|.+|.. .|.+++||||-++|=|..-..+..+++..++.+ -|+++||-...+.. ...+++.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~~e~~~v~~~ 345 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNAVEEHSVFWL 345 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhhccccceEEe
Confidence 5999999999999999985 789999999999999999999999999976654 79999999998853 4444444
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.53 E-value=6.5e-06 Score=79.12 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=54.5
Q ss_pred CCCcCcCChHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH--------H-
Q psy4634 61 HRTCSTLSGGQVRRVSIA--VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE--------A- 129 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iA--rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~--------~- 129 (249)
++...++|+|++|||.|+ .++...|+.. +..++.++++++.+++.|.|+|+++|+.+. +
T Consensus 110 ~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~ 179 (484)
T TIGR02655 110 ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVE 179 (484)
T ss_pred HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCce
Confidence 344568899999999999 5666665543 578888999999988889999999998864 2
Q ss_pred hc-cCEEEEEe
Q psy4634 130 RQ-ANVVGLMR 139 (249)
Q Consensus 130 ~~-~Dri~vl~ 139 (249)
+. ||.|+.|+
T Consensus 180 e~laDgVI~L~ 190 (484)
T TIGR02655 180 EFVSDNVVILR 190 (484)
T ss_pred eEeeeeEEEEE
Confidence 44 89999887
No 463
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.32 E-value=0.00011 Score=61.54 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH--Hhc-cCEEEEEeCC
Q psy4634 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE--ARQ-ANVVGLMRKG 141 (249)
Q Consensus 69 gGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~--~~~-~Dri~vl~~G 141 (249)
.|+-+|..||.++-.+|+.+..+| +.+||..++.+.+.+.+..++|.+|++.+|.+.+ +.. ||.+++++.+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 388999999999999999988777 8899999999999999876567899999999966 444 9999888655
No 464
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.21 E-value=0.00065 Score=69.31 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=44.1
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 81 LLHTPSLVILDEPTSGLD-PMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+++++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 681 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADI 681 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 346999999999999999 7889999999999887899999999999755
No 465
>PF13166 AAA_13: AAA domain
Probab=97.09 E-value=0.0026 Score=63.72 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=57.1
Q ss_pred cCcCChHHHHHHHHHHHHh--c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEecChhHH
Q psy4634 64 CSTLSGGQVRRVSIAVTLL--H-------TPSLVILDEPTSGLDPMLAHYFWQYLQRMS--SNGQTIIITTHYIEEA 129 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~--~-------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~TiiivtH~l~~~ 129 (249)
...||-|||.=+++|-=|+ . +..++++|.|.|+||-..+..+.+.|.++. ...+=||+-||++.+.
T Consensus 498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~ 574 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFF 574 (712)
T ss_pred cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHH
Confidence 4799999999999986543 3 678999999999999999999999999985 4567899999999764
No 466
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.00 E-value=0.00055 Score=62.05 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEecChhHHhccCEEEEEeCCEEEEecChhHH
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHYIEEARQANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el 152 (249)
.-.++.+|-++|+++++|||.+ .+.+++++.+. .|. +++.++|..+.....+|+..|..|++...|.+.+.
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHH
Confidence 4467788999999999999996 45667777765 454 67999999996666999999999999888877776
Q ss_pred H
Q psy4634 153 I 153 (249)
Q Consensus 153 ~ 153 (249)
.
T Consensus 280 ~ 280 (308)
T TIGR02788 280 I 280 (308)
T ss_pred H
Confidence 5
No 467
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.97 E-value=0.0018 Score=65.96 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=45.3
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 80 TLLHTPSLVILDEPTSGLD-PMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
.+..+|.++++|||...|| |...+.+.+.++.+++.|.+++++||+++++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567999999999999999 9999999999999887899999999999764
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=96.74 E-value=0.0053 Score=63.09 Aligned_cols=68 Identities=29% Similarity=0.293 Sum_probs=52.1
Q ss_pred cCcCChHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccC
Q psy4634 64 CSTLSGGQVRRVSIAVTLLH--TPSLVILDEP---TSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQAN 133 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~--~P~iLlLDEP---tsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~D 133 (249)
...+|-=|.....++..|-+ ++.++||||| |+.+| .....+.+++.+.+. |.+++++||+.+....++
T Consensus 664 ~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~d--g~aia~aile~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 664 ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYD--GLSIAWAVAEYLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcch--hHHHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence 35677778888888888776 9999999999 88888 444566777777766 689999999954433344
No 469
>KOG0933|consensus
Probab=96.72 E-value=0.00088 Score=68.01 Aligned_cols=70 Identities=27% Similarity=0.290 Sum_probs=54.9
Q ss_pred cCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCE
Q psy4634 64 CSTLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dr 134 (249)
.++||||||--|||+..|+ ..++++||||--++||..+.+.|-.+|+.-- .+.-.|+||=--....+||+
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVSLKeGMF~NANv 1153 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVSLKEGMFNNANV 1153 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEEchhhccccchh
Confidence 4799999999999887776 4679999999999999999999999998832 24567777743334444554
No 470
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.65 E-value=0.0024 Score=54.08 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM 138 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl 138 (249)
+++++|.++|+++++|||. |+... ..++ +.+..|.+++.++|..+.....||++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~---~~~l-~~a~~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETI---RLAL-TAAETGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHH---HHHH-HHHHcCCEEEEEecCCcHHHHHhHHHhh
Confidence 6889999999999999996 55543 3333 3455799999999999887668888766
No 471
>KOG0996|consensus
Probab=96.46 E-value=0.0025 Score=65.80 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=66.2
Q ss_pred CCcCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEE
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGL 137 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~v 137 (249)
+.+..||||+|---+||..++. ..+++++||--++||..+...|-+.|++- -++.-.|++|=+-+..+.++|.+-
T Consensus 1191 K~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkEr-TkNAQFIIISLRnnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1191 KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKER-TKNAQFIIISLRNNMFELANRLVG 1269 (1293)
T ss_pred hhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHh-ccCCeEEEEEehhhHHHHHhhhee
Confidence 4458999999999999999984 56999999999999999999999999984 446778889988888888888776
Q ss_pred Ee
Q psy4634 138 MR 139 (249)
Q Consensus 138 l~ 139 (249)
+.
T Consensus 1270 IY 1271 (1293)
T KOG0996|consen 1270 IY 1271 (1293)
T ss_pred eE
Confidence 64
No 472
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=96.38 E-value=0.0079 Score=55.77 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=60.1
Q ss_pred CcCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh-cc--
Q psy4634 65 STLSGGQVRRVSIAVTLL---------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR-QA-- 132 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~-~~-- 132 (249)
.-.|.||++-+++|.=|+ .+++||||||-+|-||+.-+..+.+. .+ .+.=+++|+=+.+.+. .-
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~---~~~Q~fvT~t~~~~~~~~~~~ 349 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE---LGVQVFVTTTDLEDIDDNLDE 349 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc---cCCeEEEEccCHHHhhhhhhc
Confidence 578999999999888776 58899999999999999999999887 33 2445677777777664 22
Q ss_pred -CEEEEEeCCEE
Q psy4634 133 -NVVGLMRKGVL 143 (249)
Q Consensus 133 -Dri~vl~~G~i 143 (249)
-++...++|+|
T Consensus 350 ~~~~f~V~~g~i 361 (363)
T COG1195 350 NAQMFHVEDGKI 361 (363)
T ss_pred cceEEEEeccee
Confidence 37888888887
No 473
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.25 E-value=0.01 Score=50.90 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=44.0
Q ss_pred cCCCEEEEeC-----CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh---------hHHhc-cCEEEEEe
Q psy4634 83 HTPSLVILDE-----PTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI---------EEARQ-ANVVGLMR 139 (249)
Q Consensus 83 ~~P~iLlLDE-----PtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l---------~~~~~-~Dri~vl~ 139 (249)
.+++.+++|- |+.+.|+..+..+.++++.+++.|.|+++++|.- ..++. ||.|++|+
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 4789999993 3345566677889999999888899999999952 33455 89999984
No 474
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.18 E-value=0.0064 Score=57.76 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=62.3
Q ss_pred CcCChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEE
Q psy4634 65 STLSGGQVRRVSIAVTLL-------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGL 137 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~-------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~v 137 (249)
++.|.|+|+|++.+.+.+ .++-++++|+||...|+. +++...+.+....|.|..+.||.-...+.|-+
T Consensus 220 sd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~--- 294 (432)
T PRK06793 220 SDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK--- 294 (432)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---
Confidence 788999999999999988 899999999999999996 66776777765458888888883233343333
Q ss_pred EeCCEEEEecCh
Q psy4634 138 MRKGVLLAEKSP 149 (249)
Q Consensus 138 l~~G~iv~~g~~ 149 (249)
.++|.|.+.++.
T Consensus 295 ~~~GSiT~~~tv 306 (432)
T PRK06793 295 TQKGSITGIYTV 306 (432)
T ss_pred CCCcceEEEEEE
Confidence 478988776544
No 475
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.041 Score=53.69 Aligned_cols=75 Identities=25% Similarity=0.400 Sum_probs=62.0
Q ss_pred CcCChHHHHHHHHHHHHh--cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 65 STLSGGQVRRVSIAVTLL--HT--PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~--~~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
+--|||+--|++||.-.+ .. .+.|++||--+|+-=.....|-+.|+++.+ ..=|+.|||-.-.+..+|.=+.+++
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTHlPQVAa~ad~H~~V~K 508 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTHLPQVAAMADTHFLVEK 508 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEecHHHHHhhhcceEEEEE
Confidence 567999999999987554 32 569999999999999999999999999864 5779999998888888776555543
No 476
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.01 Score=54.34 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=36.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
+++|||+.+||+.++..+.+.|.+.. ++.++|++||+.+.+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVL 157 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhCh
Confidence 55689999999999999999999964 5789999999998653
No 477
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=95.83 E-value=0.036 Score=52.52 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=62.8
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH-----HHHH----------HHHHHHHHh-CCcEEEEEecChhH
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-----AHYF----------WQYLQRMSS-NGQTIIITTHYIEE 128 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~-----~~~i----------~~~L~~l~~-~g~TiiivtH~l~~ 128 (249)
.+=||-+-|=..|..||=...++||+||=||+-..-- +..+ .+.++++.+ .|.++|+|+=-...
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd 400 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD 400 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence 6779999999999999999999999999999876554 3333 444666644 49988888877777
Q ss_pred Hh-ccCEEEEEeCCEE
Q psy4634 129 AR-QANVVGLMRKGVL 143 (249)
Q Consensus 129 ~~-~~Dri~vl~~G~i 143 (249)
.- .||+|+.|++=+-
T Consensus 401 y~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 401 YFDVADRVIMMDEYRP 416 (448)
T ss_pred hHhhCCEEEEecCccc
Confidence 64 5999999987544
No 478
>KOG0018|consensus
Probab=95.73 E-value=0.017 Score=59.38 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=62.7
Q ss_pred CCCCcCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEE
Q psy4634 60 DHRTCSTLSGGQVRRVSIAVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV 135 (249)
Q Consensus 60 ~~~~~~~LSgGqkQRv~iArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri 135 (249)
+.+++.+||||+|--.+||.-++- .++..+|||--++||..+...|...|+ ..+.-.|++|=--+....+|-.
T Consensus 1045 RFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvISLK~~~y~kadaL 1121 (1141)
T KOG0018|consen 1045 RFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVISLKEEFYQKADAL 1121 (1141)
T ss_pred ccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEeccHHHhhhhhce
Confidence 356679999999999999998884 469999999999999999999999999 4456667777555555567776
Q ss_pred EEEeCC
Q psy4634 136 GLMRKG 141 (249)
Q Consensus 136 ~vl~~G 141 (249)
+-+..+
T Consensus 1122 VGvyr~ 1127 (1141)
T KOG0018|consen 1122 VGVYRD 1127 (1141)
T ss_pred eeeccC
Confidence 655443
No 479
>KOG0962|consensus
Probab=95.70 E-value=0.016 Score=60.88 Aligned_cols=66 Identities=27% Similarity=0.310 Sum_probs=54.1
Q ss_pred CcCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---h--CCcEEEEEecChhHHh
Q psy4634 65 STLSGGQVR------RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS---S--NGQTIIITTHYIEEAR 130 (249)
Q Consensus 65 ~~LSgGqkQ------Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~---~--~g~TiiivtH~l~~~~ 130 (249)
+.-|-|||= |+|+|-.+..+..+|=|||||++||-.+...+...|.++. + .+.=.|++|||=.++.
T Consensus 1182 GRcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~ 1258 (1294)
T KOG0962|consen 1182 GRCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQ 1258 (1294)
T ss_pred cCccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHH
Confidence 456889974 8889999999999999999999999999888777765542 2 2567899999988764
No 480
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=95.60 E-value=0.038 Score=52.03 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=63.7
Q ss_pred cCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH-------------HHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAH-------------YFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~-------------~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
...=||-|.+-..|=+|+=...+++|.||-+|+.....+. .+.+.+.++...+.|+|.+|--++...
T Consensus 318 tgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddll 397 (554)
T COG3044 318 TGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLL 397 (554)
T ss_pred cCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhh
Confidence 3677999999999999999999999999999987655443 233334444334589999999888875
Q ss_pred c-cCEEEEEeCCEEE
Q psy4634 131 Q-ANVVGLMRKGVLL 144 (249)
Q Consensus 131 ~-~Dri~vl~~G~iv 144 (249)
. +||+++|++-+-.
T Consensus 398 a~aDRaIvMeDhrpk 412 (554)
T COG3044 398 AVADRAIVMEDHRPK 412 (554)
T ss_pred hhcceEEEecccCcc
Confidence 4 9999999987654
No 481
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.85 E-value=0.036 Score=52.84 Aligned_cols=68 Identities=9% Similarity=0.265 Sum_probs=49.9
Q ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCcEEEEEe-cChhHHhc-cCEEE-EEeCCEEEEecChh
Q psy4634 83 HTPSLVILDEPTSGLDPM-LAHYFWQYLQRMSSNGQTIIITT-HYIEEARQ-ANVVG-LMRKGVLLAEKSPE 150 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~-~~~~i~~~L~~l~~~g~Tiiivt-H~l~~~~~-~Dri~-vl~~G~iv~~g~~~ 150 (249)
.+|++|++|||...+|.. .+..++..+..+.+.|+.+|++| |...++.. .+++. =+..|.++.-..|+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCC
Confidence 379999999999988765 45678899988877788888776 77777754 55544 25677666655554
No 482
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.81 E-value=0.14 Score=49.54 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=79.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCC-CCCcCcCChHHHH-HHHHHHHHhcCC-
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVR-RVSIAVTLLHTP- 85 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~LSgGqkQ-Rv~iArAL~~~P- 85 (249)
++|+++.+++ | ..+++|++.+++..++++........+...+..++.+. ...+.+.+.+++. .+.-..+++.++
T Consensus 287 ~kV~LI~~Dt--~-RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~ 363 (484)
T PRK06995 287 SKVALLTTDS--Y-RIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAG 363 (484)
T ss_pred CeEEEEeCCc--c-chhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccC
Confidence 4799999986 3 36899999999998887654444444555566677553 3445665444432 233444455554
Q ss_pred ----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh-----HH----hc-cCEEEEEeCCEEE
Q psy4634 86 ----SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE-----EA----RQ-ANVVGLMRKGVLL 144 (249)
Q Consensus 86 ----~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~-----~~----~~-~Dri~vl~~G~iv 144 (249)
.+|+||.++.+ ..+.+.++.+...+.+-++.|+--+ .+ .. -=-|.++-.|+-+
T Consensus 364 ~p~e~~LVLdAt~~~------~~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 364 APVKRLLLLNATSHG------DTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred CCCeeEEEEeCCCcH------HHHHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 68999999887 4456666666555777666676321 11 11 1247888888643
No 483
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.46 E-value=0.26 Score=43.01 Aligned_cols=66 Identities=27% Similarity=0.273 Sum_probs=44.4
Q ss_pred CcCChHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHh-CCcEEEEEecChhHHh
Q psy4634 65 STLSGGQVRRVSIAVTL--LHTPSLVILDEPTSGLDPMLAHYFWQYL-QRMSS-NGQTIIITTHYIEEAR 130 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL--~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~-~g~TiiivtH~l~~~~ 130 (249)
..+|.=+.--..++..+ +.+..++|+||+..|-++.....+...+ +.+.+ .+..++++||+.+..+
T Consensus 101 ~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 101 SGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp TSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 44565444444444444 5677899999999999999888765554 55666 3888999999997653
No 484
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.45 E-value=0.39 Score=35.95 Aligned_cols=61 Identities=31% Similarity=0.308 Sum_probs=48.6
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHhCCcEEEEEecC
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ------YLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~------~L~~l~~~g~TiiivtH~ 125 (249)
...++++..+..++++--.+|+++++||+..-.+......... ........+..+|.++|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 4578888999999999988899999999999999988887664 222323447888998884
No 485
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.32 E-value=0.12 Score=50.19 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=55.5
Q ss_pred cCChHHHHHHHHHHHHhc---CC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 66 TLSGGQVRRVSIAVTLLH---TP-----SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~---~P-----~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
.||-|+|.-++++--|+. +| +++++|.|.+++|...+...+..++....+++-|++-||+--.+
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~ 600 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFY 600 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceeh
Confidence 499999999998766653 44 68899999999999999999999999888899999999996444
No 486
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.17 E-value=0.059 Score=52.11 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=45.9
Q ss_pred cCCCEEEEe---CCCCCCCHHH--HHHHHHHHHHHHhCCcEEEEEecChh---------HHhc-cCEEEEEe
Q psy4634 83 HTPSLVILD---EPTSGLDPML--AHYFWQYLQRMSSNGQTIIITTHYIE---------EARQ-ANVVGLMR 139 (249)
Q Consensus 83 ~~P~iLlLD---EPtsgLD~~~--~~~i~~~L~~l~~~g~TiiivtH~l~---------~~~~-~Dri~vl~ 139 (249)
.+|+.+++| .|++++|... ++.+.++++.+++.|.|+|+++|... .... ||.|+.|+
T Consensus 129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~ 200 (509)
T PRK09302 129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR 200 (509)
T ss_pred hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence 589999999 4556788766 77888888888878999999999864 2244 89999987
No 487
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.71 E-value=0.093 Score=48.31 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM 138 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl 138 (249)
.-+++++|-++|+++++||+. |+.+.....+ .+..|.+++.+.|-.+.....+|+.-|
T Consensus 185 ~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 185 ANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 345788999999999999997 8877754333 245699999999988776556666544
No 488
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.67 E-value=0.16 Score=41.88 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=50.4
Q ss_pred HHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEEecChhH-H-hccCEEEEEeC
Q psy4634 74 RVSIAVTLL--HTPSLVILDEPTSG--LDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-A-RQANVVGLMRK 140 (249)
Q Consensus 74 Rv~iArAL~--~~P~iLlLDEPtsg--LD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~-~-~~~Dri~vl~~ 140 (249)
-...|+..+ .+.++++|||-... ++......+.++|++ +.++..+|+|.++... + +.||.|--|+.
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 334445555 46799999999875 666788889999987 5568899999999965 3 44999987765
No 489
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=93.51 E-value=0.16 Score=41.83 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCCC--CCCCcCcCChHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4634 47 KMKELQEVLDLPP--DHRTCSTLSGGQVRRVS--IAVTLLH-TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNG 116 (249)
Q Consensus 47 ~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~--iArAL~~-~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g 116 (249)
.+.+.++..+++. .-.++..+|+|++|++. +++.+-. +++++ |+|++|+.+..++.+.|.++.++|
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAEA 196 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3445556666652 34456789999999977 5566544 34443 999999999999999999876653
No 490
>PRK13764 ATPase; Provisional
Probab=93.40 E-value=0.3 Score=48.44 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec---------------ChhHHhc-cCEEEEEeCCE
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH---------------YIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH---------------~l~~~~~-~Dri~vl~~G~ 142 (249)
.+|..+|+++++||.=.. .+ ++++..++..|..++-+-| ++..+.. +|+|+++++|+
T Consensus 319 ~lLR~rPD~IivGEiRd~---Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~ 391 (602)
T PRK13764 319 ILLLVRPDYTIYDEMRKT---ED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGE 391 (602)
T ss_pred HHHhhCCCEEEECCCCCH---HH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCE
Confidence 347889999999999743 22 5555555555788999999 8888866 99999999999
Q ss_pred E--EEecC
Q psy4634 143 L--LAEKS 148 (249)
Q Consensus 143 i--v~~g~ 148 (249)
| +.+.+
T Consensus 392 I~~v~~~~ 399 (602)
T PRK13764 392 VSKVYDLE 399 (602)
T ss_pred EEEEEeee
Confidence 9 44444
No 491
>PRK04296 thymidine kinase; Provisional
Probab=93.32 E-value=0.26 Score=41.42 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=40.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC---------hh-HH-hccCEEEEEeC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY---------IE-EA-RQANVVGLMRK 140 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~---------l~-~~-~~~Dri~vl~~ 140 (249)
-.+++++++||. --||. .++.++++.++..|.+|+++.++ .. .+ ..||.|.-|+.
T Consensus 76 ~~~~dvviIDEa-q~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 76 GEKIDCVLIDEA-QFLDK---EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 141 (190)
T ss_pred CCCCCEEEEEcc-ccCCH---HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence 357899999999 22443 34677777777789999999999 22 23 34999988754
No 492
>PF13514 AAA_27: AAA domain
Probab=93.27 E-value=0.18 Score=53.48 Aligned_cols=66 Identities=24% Similarity=0.230 Sum_probs=51.4
Q ss_pred cCcCChHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 64 CSTLSGGQVR------RVSIAVTL-LHTPSL-VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 64 ~~~LSgGqkQ------Rv~iArAL-~~~P~i-LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
+..||+|.+= |++++..+ -..+++ +|+|+++.+.|..-...++++|.++.+. .=||+=||+-..+.
T Consensus 1023 ~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~-~QVI~FTch~~l~~ 1096 (1111)
T PF13514_consen 1023 VEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRR-RQVIYFTCHEHLVE 1096 (1111)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccC-CeEEEEeccHHHHH
Confidence 3689999975 66666666 445566 8999999999999999999999998765 45666666666553
No 493
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.99 E-value=0.43 Score=40.79 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=36.1
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHHHH-HHhCCcEEEEEecChh--------HHhc-cCEEEEEe
Q psy4634 84 TPSLVILDEPTSGL--DPMLAHYFWQYLQR-MSSNGQTIIITTHYIE--------EARQ-ANVVGLMR 139 (249)
Q Consensus 84 ~P~iLlLDEPtsgL--D~~~~~~i~~~L~~-l~~~g~TiiivtH~l~--------~~~~-~Dri~vl~ 139 (249)
+|+.+++|.++.-+ +|...+.+...+.+ +++.|.|+++++|... .++. ||-|+.|+
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 57888889886642 44444444443444 4556999999999653 2344 67777776
No 494
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.88 E-value=0.31 Score=45.91 Aligned_cols=64 Identities=23% Similarity=0.443 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHh----CCcEEEEEecChhHHhccCEEEEEeCC
Q psy4634 76 SIAVTLLHTPSLVILDE----------PTSGLDPMLAHYFWQYLQRMSS----NGQTIIITTHYIEEARQANVVGLMRKG 141 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDE----------PtsgLD~~~~~~i~~~L~~l~~----~g~TiiivtH~l~~~~~~Dri~vl~~G 141 (249)
.+..|..+.|.++++|| +.++.|...++.+.+++..+.. .+..+|++||+.+.+..+ +++.|
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA----llR~G 305 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA----LLRPG 305 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH----HcCCC
Confidence 44556678999999999 4567788888888888877632 367899999998776432 34555
Q ss_pred EE
Q psy4634 142 VL 143 (249)
Q Consensus 142 ~i 143 (249)
++
T Consensus 306 Rf 307 (398)
T PTZ00454 306 RL 307 (398)
T ss_pred cc
Confidence 43
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.48 E-value=0.1 Score=43.63 Aligned_cols=88 Identities=8% Similarity=0.019 Sum_probs=55.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
...+.+++++. ++..++..+........+..+.....+...+.++.+.... .+.+..++|.|++++..+ .+++|+
T Consensus 25 ~~~~~v~~~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~ 100 (198)
T cd02023 25 NPKVVIISQDS-YYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPAD 100 (198)
T ss_pred CCCeEEEEecc-cccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCC
Confidence 34577888774 3333444444332222233332222344455666665543 466777899999876655 578899
Q ss_pred EEEEeCCCCCCCH
Q psy4634 87 LVILDEPTSGLDP 99 (249)
Q Consensus 87 iLlLDEPtsgLD~ 99 (249)
++|+|.|+.+.++
T Consensus 101 ~vI~eg~~~~~~~ 113 (198)
T cd02023 101 VIILEGILALYDK 113 (198)
T ss_pred EEEEechhhccch
Confidence 9999999999987
No 496
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.19 E-value=0.34 Score=46.45 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=42.6
Q ss_pred cCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHh-CCcEEEEEecChhH--------Hhc-cCEEEEEeCCE
Q psy4634 83 HTPSLVILDEPTSGL---------DPMLAHYFWQYLQRMSS-NGQTIIITTHYIEE--------ARQ-ANVVGLMRKGV 142 (249)
Q Consensus 83 ~~P~iLlLDEPtsgL---------D~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~--------~~~-~Dri~vl~~G~ 142 (249)
.+|+++++|.-++=. ++...+++...|.++++ .|.|+++++|...+ ++. +|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 589999999765421 12334555556666654 49999999997654 455 89999998764
No 497
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.02 E-value=0.38 Score=48.24 Aligned_cols=73 Identities=25% Similarity=0.322 Sum_probs=53.0
Q ss_pred CcCChHHHHHHH---HHHHHh--------cCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC--hhHH
Q psy4634 65 STLSGGQVRRVS---IAVTLL--------HTP--SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY--IEEA 129 (249)
Q Consensus 65 ~~LSgGqkQRv~---iArAL~--------~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~--l~~~ 129 (249)
..+|||||+|++ ||.+|. +.| ..+||||.|+-=|+......+..++++ |.-.+++|-. +..+
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f---glh~v~iTPlk~I~~l 1065 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF---GLHAVFITPLKEIRLL 1065 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc---CceEEEechHHHHHHH
Confidence 579999999985 566665 234 468999999999999999999998886 6667777752 3344
Q ss_pred hc-cCEEEEEeC
Q psy4634 130 RQ-ANVVGLMRK 140 (249)
Q Consensus 130 ~~-~Dri~vl~~ 140 (249)
+. ...+++.++
T Consensus 1066 ~~~v~S~ivVh~ 1077 (1104)
T COG4913 1066 RHHVRSAIVVHR 1077 (1104)
T ss_pred HhhccceEEEec
Confidence 44 444555543
No 498
>PRK06893 DNA replication initiation factor; Validated
Probab=91.31 E-value=0.41 Score=41.37 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=35.0
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 82 LHTPSLVILDEPTSGL-DPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
..++++|++||..... |......+.+++.+..++|++++++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3588999999998754 66667789999988776788877666654
No 499
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.99 E-value=0.16 Score=55.20 Aligned_cols=61 Identities=21% Similarity=0.432 Sum_probs=45.0
Q ss_pred cCcCChHHHHHHHHHHHHh--------c--------CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE-ecC
Q psy4634 64 CSTLSGGQVRRVSIAVTLL--------H--------TP-SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT-THY 125 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~--------~--------~P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiiv-tH~ 125 (249)
.+.||||||.....+.-++ . -| ++|+|||. +++|..+...++++++.+ |.=.|++ =++
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~---~~q~i~~tP~~ 1438 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL---DMQLLIAAPEN 1438 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc---CCcEEEechhh
Confidence 4799999998887776665 2 23 55699999 999999999999999854 4444444 444
Q ss_pred hhH
Q psy4634 126 IEE 128 (249)
Q Consensus 126 l~~ 128 (249)
+..
T Consensus 1439 ~~~ 1441 (1486)
T PRK04863 1439 ISP 1441 (1486)
T ss_pred ccC
Confidence 443
No 500
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=90.85 E-value=0.68 Score=46.11 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4634 46 AKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR 111 (249)
Q Consensus 46 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 111 (249)
+...+.++.+|+.. .+..+.++||| +|+||| +..||+..+..+.+.|++
T Consensus 242 ~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 242 QGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 34555677888875 67788999999 999999 799999999999999976
Done!