Query psy4634
Match_columns 249
No_of_seqs 269 out of 1666
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 21:50:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.9E-39 6.4E-44 297.7 20.8 149 9-157 105-256 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 6.7E-39 2.3E-43 295.5 20.0 150 8-157 74-226 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 4.3E-39 1.5E-43 294.8 17.9 150 8-157 79-231 (359)
4 1vpl_A ABC transporter, ATP-bi 100.0 6.8E-38 2.3E-42 275.1 21.5 159 9-167 88-248 (256)
5 1z47_A CYSA, putative ABC-tran 100.0 3.4E-38 1.2E-42 288.7 19.6 149 8-156 86-237 (355)
6 2olj_A Amino acid ABC transpor 100.0 8.9E-38 3E-42 275.4 21.0 148 9-156 100-250 (263)
7 3gfo_A Cobalt import ATP-bindi 100.0 3.7E-38 1.3E-42 279.5 18.3 147 9-155 84-234 (275)
8 2it1_A 362AA long hypothetical 100.0 4.8E-38 1.6E-42 288.4 19.7 149 8-156 74-225 (362)
9 1g29_1 MALK, maltose transport 100.0 7.3E-38 2.5E-42 288.3 20.7 149 8-156 80-231 (372)
10 1oxx_K GLCV, glucose, ABC tran 100.0 3.8E-38 1.3E-42 288.4 18.5 149 8-156 81-232 (353)
11 1b0u_A Histidine permease; ABC 100.0 1.3E-37 4.4E-42 274.0 20.6 148 9-156 93-244 (262)
12 3tif_A Uncharacterized ABC tra 100.0 7E-38 2.4E-42 271.5 18.1 144 10-153 84-233 (235)
13 2yyz_A Sugar ABC transporter, 100.0 3.9E-38 1.3E-42 288.7 16.9 149 8-156 74-225 (359)
14 2pcj_A ABC transporter, lipopr 100.0 2.9E-37 9.9E-42 265.7 19.5 140 9-148 82-222 (224)
15 1v43_A Sugar-binding transport 100.0 8.9E-38 3E-42 287.6 16.8 149 8-156 82-233 (372)
16 3d31_A Sulfate/molybdate ABC t 100.0 2.4E-37 8.2E-42 282.5 18.6 146 9-157 72-220 (348)
17 2onk_A Molybdate/tungstate ABC 100.0 1.6E-37 5.6E-42 270.2 14.6 147 8-156 69-218 (240)
18 1g6h_A High-affinity branched- 100.0 3.8E-37 1.3E-41 270.1 15.2 143 9-151 82-239 (257)
19 1ji0_A ABC transporter; ATP bi 100.0 2E-36 6.7E-41 263.1 16.7 145 9-154 81-228 (240)
20 4g1u_C Hemin import ATP-bindin 100.0 1.9E-36 6.5E-41 267.2 15.3 144 9-154 85-237 (266)
21 2yz2_A Putative ABC transporte 100.0 5.1E-36 1.8E-40 264.2 15.5 148 8-156 77-229 (266)
22 2nq2_C Hypothetical ABC transp 100.0 2.1E-35 7.1E-40 258.7 18.3 146 8-154 65-217 (253)
23 2qi9_C Vitamin B12 import ATP- 100.0 8.6E-35 3E-39 254.3 16.2 141 9-154 73-222 (249)
24 2zu0_C Probable ATP-dependent 100.0 4.6E-34 1.6E-38 252.0 19.6 144 10-153 98-253 (267)
25 2ihy_A ABC transporter, ATP-bi 100.0 4.4E-35 1.5E-39 260.1 12.4 146 9-154 97-252 (279)
26 2d2e_A SUFC protein; ABC-ATPas 100.0 1.3E-34 4.3E-39 253.1 14.8 142 10-151 81-230 (250)
27 2ixe_A Antigen peptide transpo 100.0 3.3E-34 1.1E-38 253.4 14.9 145 9-155 93-246 (271)
28 3nh6_A ATP-binding cassette SU 100.0 4.8E-34 1.6E-38 256.6 15.4 144 9-156 128-279 (306)
29 2ff7_A Alpha-hemolysin translo 100.0 9.6E-34 3.3E-38 247.3 14.4 139 9-155 83-233 (247)
30 2pjz_A Hypothetical protein ST 100.0 2.1E-33 7.2E-38 247.4 14.0 138 8-154 73-215 (263)
31 2ghi_A Transport protein; mult 100.0 6.5E-33 2.2E-37 243.7 15.0 139 9-155 93-243 (260)
32 1mv5_A LMRA, multidrug resista 100.0 2.3E-33 7.7E-38 244.1 11.2 141 8-155 75-227 (243)
33 1sgw_A Putative ABC transporte 100.0 3.3E-33 1.1E-37 239.2 8.0 133 8-143 77-210 (214)
34 3gd7_A Fusion complex of cysti 100.0 7.8E-33 2.7E-37 256.1 10.3 140 9-157 94-245 (390)
35 3b5x_A Lipid A export ATP-bind 100.0 7.1E-32 2.4E-36 260.9 15.7 141 8-155 416-568 (582)
36 3qf4_A ABC transporter, ATP-bi 100.0 4.4E-32 1.5E-36 262.8 13.7 144 8-155 416-567 (587)
37 2cbz_A Multidrug resistance-as 100.0 8.1E-32 2.8E-36 233.6 13.2 140 10-155 67-218 (237)
38 4a82_A Cystic fibrosis transme 100.0 2.2E-31 7.4E-36 257.5 17.5 140 9-156 415-566 (578)
39 2pze_A Cystic fibrosis transme 100.0 8.2E-32 2.8E-36 232.4 12.7 137 10-155 70-219 (229)
40 3b60_A Lipid A export ATP-bind 100.0 4.4E-31 1.5E-35 255.4 19.0 140 9-155 417-568 (582)
41 3qf4_B Uncharacterized ABC tra 100.0 1.6E-31 5.6E-36 259.3 14.3 140 9-156 429-580 (598)
42 4f4c_A Multidrug resistance pr 100.0 1.8E-31 6E-36 278.5 14.1 145 9-157 492-644 (1321)
43 2yl4_A ATP-binding cassette SU 100.0 2.3E-31 7.8E-36 258.0 13.6 141 9-155 418-571 (595)
44 4f4c_A Multidrug resistance pr 100.0 4.4E-32 1.5E-36 283.0 9.1 147 8-156 1152-1306(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 8.1E-30 2.8E-34 265.4 17.2 144 9-156 464-615 (1284)
46 2bbs_A Cystic fibrosis transme 100.0 5.6E-30 1.9E-34 228.5 12.9 135 10-154 100-247 (290)
47 3bk7_A ABC transporter ATP-bin 100.0 4.6E-29 1.6E-33 242.5 16.8 141 9-154 417-563 (607)
48 3g5u_A MCG1178, multidrug resi 100.0 2.6E-29 9E-34 261.5 16.1 157 8-172 1106-1270(1284)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.5E-29 1.2E-33 240.4 14.6 141 9-154 347-493 (538)
50 3j16_B RLI1P; ribosome recycli 100.0 4.5E-29 1.5E-33 242.5 15.1 144 8-155 412-560 (608)
51 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-28 4.8E-33 236.1 13.1 144 8-154 329-477 (538)
52 3ux8_A Excinuclease ABC, A sub 100.0 1.1E-28 3.7E-33 242.1 9.9 134 21-155 147-299 (670)
53 3ux8_A Excinuclease ABC, A sub 100.0 6.4E-28 2.2E-32 236.7 15.0 127 23-155 504-641 (670)
54 3pih_A Uvrabc system protein A 99.9 4.7E-27 1.6E-31 236.5 15.2 127 24-156 767-904 (916)
55 2iw3_A Elongation factor 3A; a 99.9 1.5E-26 5.1E-31 233.7 15.3 135 10-154 496-635 (986)
56 1yqt_A RNAse L inhibitor; ATP- 99.9 1.5E-26 5.1E-31 222.1 11.9 124 9-141 106-234 (538)
57 3bk7_A ABC transporter ATP-bin 99.9 1.6E-26 5.5E-31 224.6 11.4 124 9-141 176-304 (607)
58 2r6f_A Excinuclease ABC subuni 99.9 7.3E-25 2.5E-29 220.3 15.3 132 22-155 450-601 (972)
59 2r6f_A Excinuclease ABC subuni 99.9 1.4E-24 4.7E-29 218.3 15.5 127 23-155 806-943 (972)
60 3pih_A Uvrabc system protein A 99.9 1.2E-24 4.1E-29 219.1 14.2 134 21-156 409-562 (916)
61 2vf7_A UVRA2, excinuclease ABC 99.9 1.6E-24 5.6E-29 216.5 14.6 111 46-156 708-829 (842)
62 2ygr_A Uvrabc system protein A 99.9 1.1E-24 3.9E-29 219.5 13.1 133 21-155 466-618 (993)
63 3ozx_A RNAse L inhibitor; ATP 99.9 3.4E-25 1.2E-29 212.6 8.7 96 46-142 117-214 (538)
64 2ygr_A Uvrabc system protein A 99.9 4.1E-24 1.4E-28 215.5 15.6 126 24-155 825-961 (993)
65 3j16_B RLI1P; ribosome recycli 99.9 3E-24 1E-28 208.6 12.9 98 46-143 200-299 (608)
66 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 3E-23 1E-27 167.8 11.6 83 61-143 52-142 (148)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.3E-23 4.3E-28 192.7 9.9 85 61-145 274-364 (365)
68 2vf7_A UVRA2, excinuclease ABC 99.9 6.7E-23 2.3E-27 204.9 15.9 113 42-155 354-476 (842)
69 2iw3_A Elongation factor 3A; a 99.9 5.8E-23 2E-27 207.6 7.6 101 45-148 877-981 (986)
70 4aby_A DNA repair protein RECN 99.8 1.5E-20 5.1E-25 173.4 14.1 80 67-147 296-381 (415)
71 2npi_A Protein CLP1; CLP1-PCF1 99.8 4.2E-23 1.5E-27 194.6 -10.0 137 8-154 178-338 (460)
72 4ad8_A DNA repair protein RECN 99.8 1.6E-19 5.5E-24 172.1 10.1 80 62-142 392-474 (517)
73 1e69_A Chromosome segregation 99.8 5E-19 1.7E-23 159.1 11.9 91 60-151 213-310 (322)
74 3qkt_A DNA double-strand break 99.8 3.3E-19 1.1E-23 161.5 10.1 79 61-139 243-327 (339)
75 3kta_B Chromosome segregation 99.8 8.7E-19 3E-23 145.1 11.5 83 60-143 58-146 (173)
76 2o5v_A DNA replication and rep 99.8 5.7E-19 1.9E-23 161.6 7.1 86 61-152 259-354 (359)
77 4gp7_A Metallophosphoesterase; 99.7 1.1E-18 3.8E-23 143.0 2.4 72 64-135 81-168 (171)
78 3auy_A DNA double-strand break 99.7 1.9E-16 6.5E-21 144.9 12.2 77 62-139 276-359 (371)
79 1w1w_A Structural maintenance 99.7 1.3E-16 4.4E-21 148.6 11.2 79 61-139 328-410 (430)
80 1ye8_A Protein THEP1, hypothet 99.7 3.2E-17 1.1E-21 135.8 6.1 79 60-145 70-159 (178)
81 3b85_A Phosphate starvation-in 99.6 5.8E-19 2E-23 150.0 -7.7 94 8-131 65-163 (208)
82 1znw_A Guanylate kinase, GMP k 99.5 3.1E-19 1.1E-23 150.2 -19.9 121 8-139 63-202 (207)
83 1tf7_A KAIC; homohexamer, hexa 99.5 4.8E-15 1.6E-19 141.5 5.9 88 54-142 340-444 (525)
84 1tq4_A IIGP1, interferon-induc 99.5 2.3E-17 7.9E-22 153.5 -11.7 119 12-141 111-254 (413)
85 3b9q_A Chloroplast SRP recepto 99.4 7.2E-15 2.5E-19 131.4 -2.1 115 10-143 155-284 (302)
86 2v9p_A Replication protein E1; 99.4 8.1E-17 2.8E-21 144.3 -16.8 108 11-152 155-264 (305)
87 3thx_A DNA mismatch repair pro 99.4 3.3E-13 1.1E-17 136.5 6.8 91 63-153 718-812 (934)
88 2og2_A Putative signal recogni 99.3 6.3E-14 2.2E-18 128.1 -1.0 116 9-143 211-341 (359)
89 3sop_A Neuronal-specific septi 99.3 2E-14 6.9E-19 126.5 -5.9 107 8-129 46-153 (270)
90 1cr0_A DNA primase/helicase; R 99.3 4.4E-12 1.5E-16 111.7 8.2 79 64-143 127-237 (296)
91 3aez_A Pantothenate kinase; tr 99.2 3.1E-14 1.1E-18 127.8 -8.6 123 9-142 121-246 (312)
92 2o8b_B DNA mismatch repair pro 99.2 9.2E-12 3.1E-16 127.2 8.4 87 62-150 847-938 (1022)
93 3thx_B DNA mismatch repair pro 99.2 1E-11 3.6E-16 125.3 7.1 83 51-134 719-804 (918)
94 2dpy_A FLII, flagellum-specifi 99.2 2.7E-14 9.4E-19 133.7 -11.7 123 8-154 212-344 (438)
95 2pt7_A CAG-ALFA; ATPase, prote 99.1 5.3E-12 1.8E-16 114.0 -0.8 68 69-143 225-292 (330)
96 2w0m_A SSO2452; RECA, SSPF, un 99.1 9.5E-11 3.2E-15 98.0 6.9 77 66-142 103-193 (235)
97 2ehv_A Hypothetical protein PH 99.1 8.2E-11 2.8E-15 99.9 5.0 74 67-140 118-207 (251)
98 1nlf_A Regulatory protein REPA 99.1 1.8E-10 6.3E-15 100.6 7.3 80 48-130 99-185 (279)
99 3asz_A Uridine kinase; cytidin 99.0 2.5E-13 8.5E-18 113.6 -13.3 114 10-126 33-161 (211)
100 2jeo_A Uridine-cytidine kinase 99.0 3.3E-11 1.1E-15 103.6 -1.5 126 8-154 58-187 (245)
101 1wb9_A DNA mismatch repair pro 98.9 3.4E-10 1.2E-14 113.0 2.9 83 64-147 667-751 (800)
102 2obl_A ESCN; ATPase, hydrolase 98.9 3.2E-11 1.1E-15 109.7 -4.8 81 62-153 167-254 (347)
103 1ewq_A DNA mismatch repair pro 98.9 7.8E-10 2.7E-14 109.9 4.3 65 65-132 634-704 (765)
104 2cvh_A DNA repair and recombin 98.8 6.3E-09 2.2E-13 86.5 7.9 77 65-141 83-185 (220)
105 4a74_A DNA repair and recombin 98.8 2.3E-09 7.9E-14 89.7 4.3 75 67-141 100-200 (231)
106 2qnr_A Septin-2, protein NEDD5 98.8 2.5E-11 8.6E-16 108.1 -8.8 104 9-127 63-168 (301)
107 1tf7_A KAIC; homohexamer, hexa 98.7 1.8E-08 6.3E-13 95.8 8.3 69 73-141 126-210 (525)
108 3szr_A Interferon-induced GTP- 98.7 1.4E-10 4.8E-15 112.6 -6.5 119 8-152 96-235 (608)
109 1z6g_A Guanylate kinase; struc 98.7 4.8E-11 1.6E-15 101.2 -10.6 117 8-139 67-192 (218)
110 1rj9_A FTSY, signal recognitio 98.7 3.3E-10 1.1E-14 101.2 -6.1 104 9-128 156-260 (304)
111 1pzn_A RAD51, DNA repair and r 98.6 1.1E-08 3.9E-13 92.7 3.5 81 68-148 208-309 (349)
112 2eyu_A Twitching motility prot 98.6 1.4E-08 4.7E-13 88.7 2.8 61 73-140 87-147 (261)
113 2i3b_A HCR-ntpase, human cance 98.5 1.7E-09 5.9E-14 90.0 -4.8 81 61-146 78-168 (189)
114 1pui_A ENGB, probable GTP-bind 98.5 4.9E-08 1.7E-12 80.5 3.4 74 46-119 127-203 (210)
115 3jvv_A Twitching mobility prot 98.5 2.8E-08 9.5E-13 90.5 1.9 59 76-141 188-246 (356)
116 2qag_C Septin-7; cell cycle, c 98.3 1.2E-08 4.2E-13 94.8 -4.6 101 9-128 75-179 (418)
117 2bdt_A BH3686; alpha-beta prot 98.3 8.5E-10 2.9E-14 90.4 -12.3 80 68-153 96-183 (189)
118 1n0w_A DNA repair protein RAD5 98.1 3.8E-06 1.3E-10 70.5 7.1 76 66-141 98-209 (243)
119 1s96_A Guanylate kinase, GMP k 98.1 2.5E-08 8.4E-13 84.8 -6.5 54 84-154 107-160 (219)
120 3ec2_A DNA replication protein 98.1 6.1E-06 2.1E-10 66.7 7.3 49 80-128 96-145 (180)
121 1odf_A YGR205W, hypothetical 3 98.0 8.4E-08 2.9E-12 85.0 -5.6 90 10-100 64-168 (290)
122 2bbw_A Adenylate kinase 4, AK4 98.0 1.3E-08 4.4E-13 87.2 -10.5 97 11-116 76-200 (246)
123 3lda_A DNA repair protein RAD5 97.8 2.3E-05 7.9E-10 72.3 6.6 59 83-141 272-363 (400)
124 1lw7_A Transcriptional regulat 97.8 1.7E-07 5.7E-12 85.1 -8.3 88 64-153 256-354 (365)
125 2kjq_A DNAA-related protein; s 97.7 2.5E-05 8.6E-10 62.0 4.7 46 80-126 79-125 (149)
126 2r6a_A DNAB helicase, replicat 97.7 7.8E-05 2.7E-09 69.5 8.7 96 46-143 274-401 (454)
127 1sxj_E Activator 1 40 kDa subu 97.6 6.8E-05 2.3E-09 66.6 5.3 47 81-129 131-177 (354)
128 2ewv_A Twitching motility prot 97.5 2.5E-05 8.6E-10 71.2 2.1 56 74-136 199-254 (372)
129 1nij_A Hypothetical protein YJ 97.4 1.4E-05 5E-10 71.1 -1.1 63 54-128 129-191 (318)
130 2rcn_A Probable GTPase ENGC; Y 97.4 3.4E-05 1.1E-09 70.2 1.3 68 8-81 260-328 (358)
131 2dr3_A UPF0273 protein PH0284; 97.4 0.00036 1.2E-08 58.3 7.3 58 83-140 127-196 (247)
132 1udx_A The GTP-binding protein 97.3 6.1E-05 2.1E-09 69.8 1.1 66 52-124 240-306 (416)
133 2qag_B Septin-6, protein NEDD5 97.2 3E-05 1E-09 72.1 -1.5 114 9-125 82-218 (427)
134 2zr9_A Protein RECA, recombina 97.2 0.00095 3.2E-08 60.2 8.3 75 73-147 126-236 (349)
135 3e70_C DPA, signal recognition 96.9 0.00019 6.5E-09 64.4 0.8 111 11-144 185-307 (328)
136 2xau_A PRE-mRNA-splicing facto 96.8 0.0004 1.4E-08 69.0 2.7 71 63-133 187-260 (773)
137 2px0_A Flagellar biosynthesis 96.7 0.0025 8.7E-08 56.1 6.5 72 71-146 171-247 (296)
138 1zp6_A Hypothetical protein AT 96.7 0.0002 6.8E-09 57.8 -1.0 55 61-123 104-158 (191)
139 1ni3_A YCHF GTPase, YCHF GTP-b 96.6 2.8E-06 9.5E-11 78.3 -14.2 113 13-149 88-208 (392)
140 1in4_A RUVB, holliday junction 96.5 0.00011 3.8E-09 65.5 -4.0 104 8-134 102-211 (334)
141 2f1r_A Molybdopterin-guanine d 96.3 6.3E-05 2.2E-09 61.3 -6.3 52 66-117 103-164 (171)
142 2ce7_A Cell division protein F 96.2 0.0063 2.2E-07 57.2 6.4 61 69-129 93-167 (476)
143 3euj_A Chromosome partition pr 96.1 0.014 4.9E-07 54.9 7.9 70 64-139 377-464 (483)
144 2ius_A DNA translocase FTSK; n 96.0 0.00025 8.6E-09 67.3 -4.3 94 42-137 241-361 (512)
145 2yv5_A YJEQ protein; hydrolase 96.0 9.9E-05 3.4E-09 65.2 -7.0 69 10-79 216-300 (302)
146 1vma_A Cell division protein F 95.7 0.0075 2.6E-07 53.4 4.1 60 46-112 149-211 (306)
147 2e87_A Hypothetical protein PH 95.6 0.019 6.5E-07 51.4 6.5 65 61-127 226-293 (357)
148 4a1f_A DNAB helicase, replicat 95.3 0.014 4.7E-07 52.5 4.5 79 39-124 84-164 (338)
149 1ls1_A Signal recognition part 95.2 0.063 2.2E-06 46.9 8.4 71 50-122 147-218 (295)
150 1lw7_A Transcriptional regulat 94.7 0.015 5E-07 52.3 2.9 30 65-94 295-329 (365)
151 2oap_1 GSPE-2, type II secreti 94.6 1.9E-05 6.5E-10 75.1 -17.4 57 65-133 399-458 (511)
152 1lvg_A Guanylate kinase, GMP k 94.3 0.0003 1E-08 58.0 -8.6 57 77-140 116-173 (198)
153 2yhs_A FTSY, cell division pro 94.2 0.0089 3E-07 56.5 0.2 101 9-128 347-450 (503)
154 2gza_A Type IV secretion syste 94.1 0.0076 2.6E-07 54.4 -0.4 68 68-142 236-303 (361)
155 2eyu_A Twitching motility prot 93.7 5.1E-05 1.7E-09 65.9 -15.1 59 66-127 172-241 (261)
156 2z4s_A Chromosomal replication 92.9 0.14 4.8E-06 47.2 5.9 44 83-126 193-237 (440)
157 1oix_A RAS-related protein RAB 92.6 0.058 2E-06 43.3 2.5 37 73-111 152-188 (191)
158 2qm8_A GTPase/ATPase; G protei 92.2 0.026 9.1E-07 50.3 0.1 56 55-114 198-260 (337)
159 3bh0_A DNAB-like replicative h 92.1 0.12 4E-06 45.4 4.2 54 67-125 134-190 (315)
160 2ewv_A Twitching motility prot 92.0 0.00011 3.7E-09 67.0 -16.2 60 66-128 283-353 (372)
161 1jcn_A Inosine monophosphate d 91.9 0.0011 3.9E-08 62.6 -9.8 69 79-153 28-101 (514)
162 1p9r_A General secretion pathw 91.3 0.0006 2.1E-08 63.1 -12.1 71 15-89 234-314 (418)
163 1g5t_A COB(I)alamin adenosyltr 90.1 0.22 7.4E-06 41.3 3.6 70 72-142 106-181 (196)
164 1jjv_A Dephospho-COA kinase; P 89.7 0.041 1.4E-06 44.7 -1.1 81 49-139 48-131 (206)
165 2z43_A DNA repair and recombin 89.2 0.39 1.3E-05 42.1 4.8 56 72-127 188-259 (324)
166 3c8u_A Fructokinase; YP_612366 89.0 0.0017 6E-08 53.5 -10.1 69 65-154 110-181 (208)
167 3b9p_A CG5977-PA, isoform A; A 88.9 0.75 2.6E-05 39.1 6.3 71 68-138 97-186 (297)
168 1fnn_A CDC6P, cell division co 88.7 0.72 2.5E-05 40.4 6.3 46 83-129 124-172 (389)
169 2f9l_A RAB11B, member RAS onco 88.3 0.25 8.6E-06 39.5 2.7 36 75-112 130-165 (199)
170 1b9m_A Protein (mode); DNA-bin 87.6 0.22 7.5E-06 42.2 2.0 50 37-86 44-93 (265)
171 2x8a_A Nuclear valosin-contain 86.2 0.0075 2.5E-07 52.3 -8.2 46 62-109 133-190 (274)
172 3hr8_A Protein RECA; alpha and 86.0 7.1 0.00024 34.9 11.2 69 73-141 126-230 (356)
173 1u94_A RECA protein, recombina 85.3 4.1 0.00014 36.3 9.3 73 73-145 128-236 (356)
174 2qtf_A Protein HFLX, GTP-bindi 85.2 0.61 2.1E-05 41.9 3.7 64 47-114 280-353 (364)
175 2r8r_A Sensor protein; KDPD, P 84.7 0.87 3E-05 38.5 4.2 48 77-124 77-125 (228)
176 1v5w_A DMC1, meiotic recombina 83.0 1.2 4.1E-05 39.4 4.6 55 73-127 204-275 (343)
177 1l8q_A Chromosomal replication 82.0 2.6 9E-05 36.3 6.4 44 82-125 96-140 (324)
178 1u0l_A Probable GTPase ENGC; p 81.7 0.015 5.3E-07 50.9 -8.2 56 10-69 221-294 (301)
179 3szr_A Interferon-induced GTP- 81.2 0.84 2.9E-05 43.8 3.1 60 64-124 162-223 (608)
180 2q6t_A DNAB replication FORK h 80.3 6.8 0.00023 35.7 8.8 57 66-124 292-361 (444)
181 1t9h_A YLOQ, probable GTPase E 79.4 0.052 1.8E-06 48.0 -5.6 63 11-74 225-303 (307)
182 4ag6_A VIRB4 ATPase, type IV s 78.3 2.2 7.5E-05 38.1 4.8 58 83-140 261-334 (392)
183 2b8t_A Thymidine kinase; deoxy 78.1 2.8 9.7E-05 34.9 5.1 51 84-139 89-150 (223)
184 2w58_A DNAI, primosome compone 77.3 0.98 3.4E-05 36.0 1.9 49 82-130 113-164 (202)
185 3k1j_A LON protease, ATP-depen 76.5 0.48 1.6E-05 45.3 -0.2 47 64-111 181-227 (604)
186 2qby_A CDC6 homolog 1, cell di 75.6 1.4 4.7E-05 38.3 2.5 45 84-128 128-175 (386)
187 3bos_A Putative DNA replicatio 74.5 1.9 6.5E-05 34.7 3.0 44 82-125 102-147 (242)
188 3t34_A Dynamin-related protein 74.0 2.2 7.7E-05 37.6 3.5 59 65-124 153-212 (360)
189 2orv_A Thymidine kinase; TP4A 72.1 7.9 0.00027 32.7 6.3 52 82-139 88-150 (234)
190 1njg_A DNA polymerase III subu 71.9 3.2 0.00011 32.9 3.7 44 84-129 126-169 (250)
191 4dgh_A Sulfate permease family 67.9 15 0.00052 27.1 6.6 45 82-126 46-91 (130)
192 1sxj_D Activator 1 41 kDa subu 65.0 6.8 0.00023 33.6 4.6 44 84-129 133-176 (353)
193 2qgz_A Helicase loader, putati 64.3 2.7 9.1E-05 36.6 1.8 49 82-130 212-263 (308)
194 1xp8_A RECA protein, recombina 63.7 21 0.00071 31.8 7.7 54 73-126 139-211 (366)
195 1ega_A Protein (GTP-binding pr 63.3 3 0.0001 36.1 1.9 56 67-129 101-162 (301)
196 2q6t_A DNAB replication FORK h 63.0 28 0.00096 31.5 8.6 66 54-124 252-318 (444)
197 2i1q_A DNA repair and recombin 60.4 6.3 0.00022 34.0 3.5 51 75-125 192-258 (322)
198 3kl4_A SRP54, signal recogniti 59.7 9.7 0.00033 35.0 4.8 52 74-125 169-223 (433)
199 1xx6_A Thymidine kinase; NESG, 58.3 17 0.00059 29.2 5.6 52 83-139 80-142 (191)
200 3d8b_A Fidgetin-like protein 1 58.2 18 0.00061 31.7 6.2 58 72-129 164-234 (357)
201 4dgf_A Sulfate transporter sul 56.9 21 0.00073 26.5 5.6 44 83-126 50-94 (135)
202 3h4m_A Proteasome-activating n 56.6 10 0.00035 31.6 4.1 56 74-129 100-169 (285)
203 3oiz_A Antisigma-factor antago 55.9 13 0.00045 26.3 4.1 42 82-123 41-83 (99)
204 3llo_A Prestin; STAS domain, c 55.9 32 0.0011 25.5 6.6 44 83-126 62-106 (143)
205 2orw_A Thymidine kinase; TMTK, 54.4 11 0.00036 30.0 3.7 52 83-139 75-137 (184)
206 2chg_A Replication factor C sm 53.6 17 0.00058 28.1 4.8 44 83-128 101-144 (226)
207 3cf0_A Transitional endoplasmi 53.5 19 0.00065 30.6 5.4 56 74-129 98-167 (301)
208 2dy1_A Elongation factor G; tr 53.1 22 0.00075 34.3 6.3 44 80-128 95-138 (665)
209 3bh0_A DNAB-like replicative h 51.6 39 0.0013 29.0 7.2 50 76-125 169-230 (315)
210 3io5_A Recombination and repai 50.7 26 0.00089 31.1 5.8 76 52-127 75-173 (333)
211 3co5_A Putative two-component 50.6 31 0.0011 25.7 5.7 40 84-124 75-114 (143)
212 1iy2_A ATP-dependent metallopr 50.5 0.12 4.1E-06 44.1 -9.2 27 65-93 168-194 (278)
213 3ny7_A YCHM protein, sulfate t 50.5 19 0.00064 26.3 4.3 43 83-126 44-87 (118)
214 1sbo_A Putative anti-sigma fac 47.6 66 0.0023 22.1 7.1 47 78-124 36-84 (110)
215 3cmw_A Protein RECA, recombina 47.2 52 0.0018 35.5 8.4 70 73-142 797-902 (1706)
216 2j9r_A Thymidine kinase; TK1, 46.9 29 0.00099 28.7 5.3 51 84-139 101-162 (214)
217 2ka5_A Putative anti-sigma fac 46.5 58 0.002 23.6 6.6 45 80-124 47-92 (125)
218 1ixz_A ATP-dependent metallopr 44.2 0.12 4.2E-06 43.3 -10.0 28 65-94 144-171 (254)
219 2qz4_A Paraplegin; AAA+, SPG7, 43.9 60 0.0021 26.1 6.9 56 74-129 88-158 (262)
220 3a10_A Response regulator; pho 42.2 78 0.0027 21.4 6.5 41 82-125 43-83 (116)
221 1q57_A DNA primase/helicase; d 42.1 49 0.0017 30.3 6.6 53 73-126 341-404 (503)
222 1tmy_A CHEY protein, TMY; chem 41.5 61 0.0021 22.1 5.8 40 83-125 46-85 (120)
223 3lnc_A Guanylate kinase, GMP k 41.2 0.27 9.2E-06 40.6 -8.2 49 81-129 145-198 (231)
224 3llm_A ATP-dependent RNA helic 40.9 41 0.0014 27.1 5.4 59 68-128 162-222 (235)
225 1srr_A SPO0F, sporulation resp 40.7 86 0.0029 21.5 6.6 40 82-125 45-85 (124)
226 3f6c_A Positive transcription 39.8 71 0.0024 22.3 6.1 38 83-124 45-82 (134)
227 1jr3_A DNA polymerase III subu 38.9 25 0.00086 30.1 3.9 44 83-128 118-161 (373)
228 2kln_A Probable sulphate-trans 38.6 28 0.00096 25.5 3.6 42 84-125 47-89 (130)
229 3cmu_A Protein RECA, recombina 37.9 70 0.0024 35.2 7.7 70 73-142 448-553 (2050)
230 1mvo_A PHOP response regulator 37.6 91 0.0031 21.8 6.3 40 83-125 46-85 (136)
231 4fcw_A Chaperone protein CLPB; 36.8 47 0.0016 27.6 5.3 36 76-112 110-146 (311)
232 3cu5_A Two component transcrip 36.5 80 0.0027 22.6 6.0 39 82-124 47-85 (141)
233 1svm_A Large T antigen; AAA+ f 36.0 0.19 6.4E-06 45.7 -10.8 48 62-120 278-326 (377)
234 3q6v_A Beta-lactamase; metallo 34.9 40 0.0014 26.7 4.3 43 84-129 34-77 (233)
235 3bgw_A DNAB-like replicative h 34.7 39 0.0013 30.8 4.6 53 67-124 263-318 (444)
236 2vhj_A Ntpase P4, P4; non- hyd 34.6 95 0.0033 27.3 6.9 56 69-125 167-235 (331)
237 1dbw_A Transcriptional regulat 34.1 87 0.003 21.6 5.7 41 82-125 45-85 (126)
238 3cmw_A Protein RECA, recombina 34.0 1.4E+02 0.0047 32.3 9.1 67 76-142 451-553 (1706)
239 1th8_B Anti-sigma F factor ant 33.9 58 0.002 22.7 4.6 49 77-125 34-84 (116)
240 3b2n_A Uncharacterized protein 33.8 95 0.0032 21.8 5.9 38 83-124 48-85 (133)
241 3cz5_A Two-component response 33.6 1.2E+02 0.0042 21.7 6.7 41 82-125 49-89 (153)
242 3eul_A Possible nitrate/nitrit 33.5 1E+02 0.0034 22.2 6.1 74 43-126 26-100 (152)
243 1ypw_A Transitional endoplasmi 33.2 31 0.0011 34.0 3.9 57 73-129 286-353 (806)
244 2jk1_A HUPR, hydrogenase trans 32.7 89 0.003 22.1 5.6 41 82-125 42-82 (139)
245 3hu3_A Transitional endoplasmi 32.4 42 0.0014 31.0 4.5 55 75-129 288-353 (489)
246 1gml_A T-complex protein 1 sub 32.4 67 0.0023 25.4 5.2 48 82-129 25-91 (178)
247 2zts_A Putative uncharacterize 32.1 82 0.0028 24.9 5.8 59 81-139 132-206 (251)
248 1sq5_A Pantothenate kinase; P- 31.8 1.8 6E-05 37.6 -4.8 69 11-99 131-199 (308)
249 3u61_B DNA polymerase accessor 31.7 53 0.0018 27.7 4.8 44 84-129 105-149 (324)
250 1d2n_A N-ethylmaleimide-sensit 31.5 52 0.0018 27.1 4.5 54 76-129 116-180 (272)
251 2vo9_A EAD500, L-alanyl-D-glut 31.3 54 0.0018 26.1 4.4 30 94-123 30-59 (179)
252 2wji_A Ferrous iron transport 31.3 61 0.0021 24.1 4.6 43 83-130 80-122 (165)
253 1we3_A CPN60(groel); chaperoni 31.2 27 0.00093 32.9 3.0 43 82-129 213-255 (543)
254 2rjn_A Response regulator rece 30.9 1.1E+02 0.0038 22.0 6.0 40 82-125 49-88 (154)
255 2rdm_A Response regulator rece 30.9 1.3E+02 0.0045 20.7 6.9 39 84-125 50-89 (132)
256 4e7p_A Response regulator; DNA 30.9 1E+02 0.0036 22.1 5.8 73 43-125 31-104 (150)
257 3n70_A Transport activator; si 30.7 48 0.0016 24.6 3.9 39 84-124 76-114 (145)
258 2qxy_A Response regulator; reg 30.6 1.1E+02 0.0039 21.5 5.9 38 82-124 46-83 (142)
259 3crn_A Response regulator rece 30.3 1.2E+02 0.004 21.2 5.9 40 82-125 45-85 (132)
260 3bgw_A DNAB-like replicative h 29.9 89 0.003 28.3 6.2 58 66-125 290-359 (444)
261 3syl_A Protein CBBX; photosynt 29.8 1.5E+02 0.0051 24.4 7.3 41 84-125 130-178 (309)
262 3bt7_A TRNA (uracil-5-)-methyl 29.8 55 0.0019 28.7 4.6 38 84-129 295-332 (369)
263 4b4t_L 26S protease subunit RP 29.7 98 0.0033 28.2 6.4 58 73-130 263-334 (437)
264 1iqp_A RFCS; clamp loader, ext 29.6 67 0.0023 26.7 5.0 44 83-128 109-152 (327)
265 3i42_A Response regulator rece 29.6 1.1E+02 0.0037 21.1 5.5 70 44-124 15-85 (127)
266 3eod_A Protein HNR; response r 29.5 81 0.0028 21.9 4.8 43 81-126 48-90 (130)
267 1x52_A Pelota homolog, CGI-17; 29.5 53 0.0018 24.5 3.8 42 87-128 58-99 (124)
268 3nhm_A Response regulator; pro 29.4 1.4E+02 0.0048 20.6 6.3 40 82-124 45-85 (133)
269 3hzh_A Chemotaxis response reg 29.3 1.3E+02 0.0044 21.9 6.1 76 42-125 46-121 (157)
270 3lxx_A GTPase IMAP family memb 29.2 95 0.0032 24.8 5.7 43 82-124 110-154 (239)
271 2v1u_A Cell division control p 29.2 30 0.001 29.6 2.7 44 84-127 130-178 (387)
272 2pl1_A Transcriptional regulat 28.9 1.3E+02 0.0046 20.2 6.3 70 45-125 13-82 (121)
273 3lua_A Response regulator rece 28.7 1.3E+02 0.0044 21.1 5.9 41 83-125 49-91 (140)
274 2qr3_A Two-component system re 28.1 1.3E+02 0.0043 21.0 5.7 41 82-125 45-90 (140)
275 1xp2_A EAD500, PLY500, L-alany 28.0 66 0.0022 25.9 4.3 30 94-123 30-59 (179)
276 3f6p_A Transcriptional regulat 27.8 1.2E+02 0.0042 20.7 5.6 41 82-126 44-84 (120)
277 1zxx_A 6-phosphofructokinase; 27.7 1.2E+02 0.0041 26.5 6.3 52 69-125 170-223 (319)
278 2dpm_A M.dpnii 1, protein (ade 27.6 1.4E+02 0.0046 25.4 6.6 47 85-131 188-248 (284)
279 1a6d_A Thermosome (alpha subun 27.4 51 0.0017 31.0 4.1 48 82-129 231-297 (545)
280 3hv2_A Response regulator/HD d 26.5 1.6E+02 0.0055 21.1 6.2 39 82-124 56-94 (153)
281 4eyb_A Beta-lactamase NDM-1; m 26.2 77 0.0026 26.2 4.7 42 84-128 83-125 (270)
282 1kgs_A DRRD, DNA binding respo 26.2 1.6E+02 0.0056 22.6 6.6 42 82-126 44-85 (225)
283 4b4t_I 26S protease regulatory 26.0 84 0.0029 28.8 5.2 58 74-131 265-336 (437)
284 2a9o_A Response regulator; ess 25.6 1.5E+02 0.0053 19.8 6.5 40 83-126 44-83 (120)
285 1qkk_A DCTD, C4-dicarboxylate 25.5 1.3E+02 0.0044 21.6 5.5 39 83-125 46-85 (155)
286 3t6o_A Sulfate transporter/ant 25.5 1.6E+02 0.0053 20.9 5.8 47 79-125 41-90 (121)
287 4dad_A Putative pilus assembly 25.3 1.5E+02 0.0051 20.9 5.8 39 83-125 66-105 (146)
288 3iog_A Beta-lactamase; hydrola 25.2 59 0.002 25.5 3.7 38 85-125 32-69 (227)
289 4b4t_J 26S protease regulatory 25.2 1E+02 0.0034 27.9 5.5 56 74-129 231-300 (405)
290 3jte_A Response regulator rece 25.2 1.8E+02 0.0061 20.4 6.7 73 44-125 15-87 (143)
291 3ilh_A Two component response 25.1 1.8E+02 0.006 20.3 6.2 39 83-124 59-100 (146)
292 1jr3_D DNA polymerase III, del 25.1 56 0.0019 27.9 3.7 49 77-126 69-117 (343)
293 3t15_A Ribulose bisphosphate c 25.0 98 0.0033 26.0 5.2 13 82-94 97-109 (293)
294 1pfk_A Phosphofructokinase; tr 25.0 1.4E+02 0.0048 26.0 6.3 49 71-125 173-224 (320)
295 1a6d_B Thermosome (beta subuni 25.0 69 0.0024 30.0 4.6 48 82-129 232-298 (543)
296 3o63_A Probable thiamine-phosp 24.9 2.6E+02 0.0088 23.1 7.8 60 77-137 49-118 (243)
297 1e9r_A Conjugal transfer prote 24.8 31 0.001 30.8 2.0 43 84-129 279-321 (437)
298 3hdg_A Uncharacterized protein 24.7 1.2E+02 0.004 21.2 5.0 39 83-125 50-88 (137)
299 2zay_A Response regulator rece 24.3 1.7E+02 0.0058 20.6 5.9 26 83-111 51-76 (147)
300 1sxj_B Activator 1 37 kDa subu 24.3 66 0.0022 26.7 3.9 43 84-128 107-149 (323)
301 2www_A Methylmalonic aciduria 23.9 24 0.00082 31.0 1.1 54 69-130 229-290 (349)
302 1xwi_A SKD1 protein; VPS4B, AA 23.8 1.7E+02 0.0058 24.9 6.6 65 74-138 95-176 (322)
303 1k68_A Phytochrome response re 23.6 1.3E+02 0.0044 20.8 5.0 40 83-125 54-95 (140)
304 3ilx_A First ORF in transposon 23.5 1.3E+02 0.0044 22.6 5.1 50 71-124 21-71 (143)
305 3grc_A Sensor protein, kinase; 23.3 1.6E+02 0.0054 20.6 5.5 73 43-126 17-90 (140)
306 3kcn_A Adenylate cyclase homol 23.3 2.1E+02 0.007 20.4 6.3 38 83-124 46-84 (151)
307 1lv7_A FTSH; alpha/beta domain 23.2 1.5E+02 0.0051 23.8 5.9 54 76-129 96-163 (257)
308 3cfy_A Putative LUXO repressor 23.1 1.6E+02 0.0055 20.7 5.5 39 82-124 46-84 (137)
309 1ys7_A Transcriptional regulat 22.9 2E+02 0.0069 22.2 6.6 71 44-125 19-89 (233)
310 1zgz_A Torcad operon transcrip 22.9 1.8E+02 0.0061 19.6 6.7 38 82-124 44-81 (122)
311 1jql_B DNA polymerase III, del 22.8 80 0.0027 23.5 3.8 59 67-126 59-117 (140)
312 3p9d_G T-complex protein 1 sub 22.4 1.1E+02 0.0038 28.7 5.4 48 82-129 236-302 (550)
313 3lte_A Response regulator; str 22.4 1.8E+02 0.0062 19.9 5.6 41 82-125 48-89 (132)
314 2hqs_H Peptidoglycan-associate 22.2 1.2E+02 0.0042 21.8 4.7 43 82-124 2-45 (118)
315 3p9d_A T-complex protein 1 sub 22.1 86 0.0029 29.5 4.6 46 84-129 241-305 (559)
316 1ojl_A Transcriptional regulat 22.0 1.2E+02 0.0039 25.8 5.1 41 84-125 96-146 (304)
317 1a04_A Nitrate/nitrite respons 22.0 1.7E+02 0.0058 22.4 5.9 42 82-126 49-90 (215)
318 1m3s_A Hypothetical protein YC 21.8 1.2E+02 0.0041 23.2 4.8 40 103-142 93-134 (186)
319 2g1p_A DNA adenine methylase; 21.8 1.5E+02 0.0052 25.0 5.8 47 85-131 175-235 (278)
320 3vfd_A Spastin; ATPase, microt 21.6 1.4E+02 0.0048 26.0 5.7 54 76-129 199-265 (389)
321 1dz3_A Stage 0 sporulation pro 21.6 2E+02 0.0069 19.7 6.6 41 83-126 47-88 (130)
322 4a1f_A DNAB helicase, replicat 21.4 73 0.0025 27.9 3.8 59 66-126 137-206 (338)
323 1tk9_A Phosphoheptose isomeras 21.3 1.4E+02 0.0046 22.8 5.0 56 81-141 107-164 (188)
324 3tsm_A IGPS, indole-3-glycerol 21.1 2.8E+02 0.0095 23.4 7.3 49 77-130 135-183 (272)
325 2jjq_A Uncharacterized RNA met 20.9 1.2E+02 0.004 27.4 5.1 40 84-129 353-392 (425)
326 3r0j_A Possible two component 20.9 2.2E+02 0.0074 22.6 6.4 73 43-126 34-106 (250)
327 1p2f_A Response regulator; DRR 20.9 1.4E+02 0.0048 23.0 5.1 40 83-125 42-81 (220)
328 1k66_A Phytochrome response re 20.8 1.6E+02 0.0055 20.6 5.1 41 83-126 61-103 (149)
329 1h4x_A SPOIIAA, anti-sigma F f 20.8 1.3E+02 0.0043 21.0 4.4 41 84-124 41-82 (117)
330 3n53_A Response regulator rece 20.4 1.2E+02 0.004 21.4 4.2 40 83-125 45-86 (140)
331 1ujc_A Phosphohistidine phosph 20.4 91 0.0031 23.6 3.7 24 103-126 86-110 (161)
332 3cg4_A Response regulator rece 20.3 1.7E+02 0.006 20.3 5.2 72 43-125 18-90 (142)
333 3mca_B Protein DOM34, elongati 20.2 1.5E+02 0.005 26.6 5.6 41 86-126 310-350 (390)
334 2a6p_A Possible phosphoglycera 20.1 79 0.0027 25.1 3.5 24 103-126 129-154 (208)
335 3eie_A Vacuolar protein sortin 20.1 2.1E+02 0.007 24.1 6.4 63 76-138 102-181 (322)
336 1ixk_A Methyltransferase; open 20.1 99 0.0034 26.4 4.3 43 84-126 187-249 (315)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.9e-39 Score=297.68 Aligned_cols=149 Identities=26% Similarity=0.413 Sum_probs=140.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
++||||||++.+++.+||+||+.++...++.++++.++++.++++.+||.+ .++++++|||||||||+|||||+++|++
T Consensus 105 ~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~l 184 (366)
T 3tui_C 105 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 184 (366)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999999988888888888899999999999986 7899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
||||||||||||.++..++++|++++++ |+|||+||||++++.. ||||++|++|++++.|++++++.+..
T Consensus 185 LLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~ 256 (366)
T 3tui_C 185 LLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256 (366)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCC
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999765 9999999999999976 99999999999999999999987644
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.7e-39 Score=295.53 Aligned_cols=150 Identities=31% Similarity=0.418 Sum_probs=141.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+.+||+||+.|+.+.++.++++.+++++++++.+++.. .++++++|||||||||+|||||+.+|+
T Consensus 74 ~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~ 153 (381)
T 3rlf_A 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (381)
T ss_dssp GSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCS
T ss_pred HCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999988888888888999999999999986 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+|||||||+|||+..+..+++.|+++.++ |+|+|+||||++++.. ||||++|++|++++.|+++++.....
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999766 9999999999999976 99999999999999999999987643
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.3e-39 Score=294.84 Aligned_cols=150 Identities=28% Similarity=0.429 Sum_probs=138.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+.+||+||+.|+...++.++++.+++++++++.++|.+ .++++++|||||||||+|||||+++|+
T Consensus 79 ~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp GSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999877667777788889999999999986 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+|||||||+|||+..+..+++.|.++. +.|+|+|+||||++++.. ||||++|++|+|++.|+++++.....
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence 999999999999999999999888875 459999999999999976 99999999999999999999987643
No 4
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-38 Score=275.07 Aligned_cols=159 Identities=32% Similarity=0.506 Sum_probs=142.0
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.|||+||++.+++.+||+||+.++...++.+.++.+++++++++.+++.+ .++++++||||||||++|||||+++|++
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 569999999999999999999999876666666666678889999999976 6889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcCCCcHHHHHH
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFL 166 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~~~~l~~~~~ 166 (249)
|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++........+...|.
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~l~~~~~ 247 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFE 247 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999999997779999999999999976 99999999999999999999976544445565554
Q ss_pred H
Q psy4634 167 R 167 (249)
Q Consensus 167 ~ 167 (249)
.
T Consensus 248 ~ 248 (256)
T 1vpl_A 248 E 248 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.4e-38 Score=288.67 Aligned_cols=149 Identities=28% Similarity=0.446 Sum_probs=139.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+.+||+||+.|+...++.+.++.+++++++++.++|.+ .++++++|||||||||+|||||+.+|+
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999887777777777889999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|+++.++ |+|+|+||||++++.. ||||++|++|+++..|+++++..+.
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999765 9999999999999976 9999999999999999999998754
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=8.9e-38 Score=275.36 Aligned_cols=148 Identities=30% Similarity=0.475 Sum_probs=135.3
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYA-SLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.||||||++.+|+.+||+||+.++. ..++.+.++.+++++++++.+++.+ .++++.+||||||||++|||||+++|+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 46999999999999999999999865 4456666666778899999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..|+++++....
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999997779999999999999975 9999999999999999999987653
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.7e-38 Score=279.49 Aligned_cols=147 Identities=30% Similarity=0.433 Sum_probs=135.1
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.||||||++. .+..+||+||+.|+...++.+.++.+++++++++.+++.+ .++++.+|||||||||+|||||+++|+
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999973 3346899999999988777888888889999999999986 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+||||.++..++++|++++ ++|+|||++|||++++.. ||||++|++|+++++|+++++...
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999997 559999999999999976 999999999999999999998764
No 8
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.8e-38 Score=288.41 Aligned_cols=149 Identities=31% Similarity=0.466 Sum_probs=139.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+.+||+||+.|+...++.+.++.+++++++++.++|.+ .++++++|||||||||+|||||+++|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999887777777777889999999999986 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||||||+.++..+++.|+++.++ |+|+|+||||++++.. ||+|++|++|++++.|+++++..+.
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999765 9999999999999975 9999999999999999999998754
No 9
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=7.3e-38 Score=288.26 Aligned_cols=149 Identities=29% Similarity=0.455 Sum_probs=139.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+.+||+||+.|+...++.+.++.+++++++++.++|.+ .++++++|||||||||+|||||+.+|+
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999988777777777889999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|+++.++ |+|+|+||||++++.. ||+|++|++|+++..|+++++..+.
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999765 9999999999999975 9999999999999999999998753
No 10
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.8e-38 Score=288.36 Aligned_cols=149 Identities=31% Similarity=0.463 Sum_probs=138.7
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.++||||||++.+|+.+||+||+.|+...++.+.++.+++++++++.++|.+ .++++++|||||||||+|||||+.+|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4679999999999999999999999877667777777888999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|+++.++ |+|+|+||||++++.. ||||++|++|+++..|+++++..+.
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999765 9999999999999976 9999999999999999999998754
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-37 Score=274.00 Aligned_cols=148 Identities=27% Similarity=0.418 Sum_probs=134.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYA-SLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
+.||||||++.+|+.+||+||+.++. ..++.+.++.+++++++++.+++.+ .++++++|||||||||+|||||+++|
T Consensus 93 ~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 172 (262)
T 1b0u_A 93 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 172 (262)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred cceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 46999999999999999999999864 4455666666778899999999974 58899999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
++|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||+|++|++|++++.|+++++....
T Consensus 173 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 173 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244 (262)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999997779999999999999975 9999999999999999999998653
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=7e-38 Score=271.51 Aligned_cols=144 Identities=28% Similarity=0.400 Sum_probs=128.9
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLY---RISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.||||||++.+++.+||+||+.++.... ..+.++..+++.++++.+++.+ .++++++||||||||++|||||+++
T Consensus 84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999976643 3456677788899999999975 3889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~ 153 (249)
|++|||||||+|||+.++..+++.|++++++ |+|||+||||++.+..||+|++|++|+++..++++++.
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999765 99999999999976569999999999999998877653
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-38 Score=288.74 Aligned_cols=149 Identities=29% Similarity=0.425 Sum_probs=137.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+++||+||+.|+...++.+.++.+++++++++.++|.+ .++++++|||||||||+|||||+++|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999876666656666778999999999976 799999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|+++.++ |+|+|+||||++++.. ||||++|++|+++..|+++++..+.
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999765 9999999999999975 9999999999999999999998754
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.9e-37 Score=265.74 Aligned_cols=140 Identities=27% Similarity=0.314 Sum_probs=129.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
+.|||+||++.+++.+||+||+.++...++.+.++.+++++++++.+++.+ .++++++||||||||++|||||+++|++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999999999999999877666666666778899999999976 7899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecC
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~ 148 (249)
|||||||+|||+.++..+++.|++++++|+|||++|||++++..||++++|++|+++++|+
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999777999999999999985599999999999998875
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8.9e-38 Score=287.58 Aligned_cols=149 Identities=26% Similarity=0.392 Sum_probs=131.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.||||||++.+|+++||+||+.|+...++.++++.+++++++++.++|.+ .++++++|||||||||+|||||+.+|+
T Consensus 82 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 161 (372)
T 1v43_A 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 161 (372)
T ss_dssp GGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999876666777777888999999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.++..+++.|+++.++ |+|+|++|||++++.. ||||++|++|+++..|+++++..+.
T Consensus 162 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 162 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999765 9999999999999975 9999999999999999999998754
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.4e-37 Score=282.49 Aligned_cols=146 Identities=27% Similarity=0.416 Sum_probs=133.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
++||||||++.+|+.+||+||+.|+...++.+.. ++++++++.++|.+ .++++++|||||||||+|||||+++|++
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l 148 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI 148 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 5799999999999999999999998776555443 67889999999986 7999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
|||||||+|||+.++..+++.|+++.++ |+|+|+||||++++.. ||||++|++|+++..|+++++..+..
T Consensus 149 LLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 149 LLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp EEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 9999999999999999999999999664 9999999999999976 99999999999999999999986543
No 17
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-37 Score=270.20 Aligned_cols=147 Identities=28% Similarity=0.401 Sum_probs=131.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.|||+||++.+++.+||+||+.++...++. ...+++++++++.+++.+ .++++++||||||||++|||||+++|+
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 45799999999999999999999986543332 223567889999999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+|||+.+++.+++.|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999998765 9999999999999865 9999999999999999999997654
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.8e-37 Score=270.07 Aligned_cols=143 Identities=27% Similarity=0.378 Sum_probs=129.0
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHh--cC-----------CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASL--YR-----------ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRR 74 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQR 74 (249)
+.||||||++.+|+.+||+||+.++... ++ .+..+.+++++++++.+++.+ .++++++||||||||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHH
Confidence 4699999999999999999999986543 12 233455677889999999976 789999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhH
Q psy4634 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~e 151 (249)
++|||||+++|++|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999999998779999999999999975 99999999999999999888
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-36 Score=263.06 Aligned_cols=145 Identities=25% Similarity=0.430 Sum_probs=128.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD-LPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+.|||+||++.+|+.+||+||+.++.. ...+.++..++++++++.++ +.+ .++++++||||||||++|||||+++|+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 359999999999999999999998642 22233445677888999995 865 688999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999997779999999999999865 99999999999999999998864
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.9e-36 Score=267.18 Aligned_cols=144 Identities=27% Similarity=0.372 Sum_probs=129.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhc----
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH---- 83 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~---- 83 (249)
+.+||++|++.+++.+||+||+.++...+. ..+.+++++++++.+++.+ .++++++||||||||++|||||++
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 85 RTRAVMRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp HHEEEECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCS
T ss_pred heEEEEecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 469999999998888999999998765442 2344677889999999976 789999999999999999999999
Q ss_pred --CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 --TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 --~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|++|||||||+|||+.++..+++.|++++++ |+|||++|||++++.. ||||++|++|++++.|+++++..
T Consensus 163 ~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 163 QPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp SCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred CCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 99999999999999999999999999999765 6899999999999975 99999999999999999999865
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-36 Score=264.21 Aligned_cols=148 Identities=26% Similarity=0.385 Sum_probs=130.2
Q ss_pred CCcEEEEeCCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC--C-CCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQET-ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP--P-DHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~-~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
.+.||||||++ .+++.+||+||+.++...+ .+.++.+++++++++.+++. + .++++++||||||||++|||||++
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 77 RRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp GGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence 35799999996 4566789999999865433 33333456788899999998 7 789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
+|++|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..|+++++....
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 999999999999999999999999999997679999999999999976 9999999999999999999987654
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.1e-35 Score=258.73 Aligned_cols=146 Identities=23% Similarity=0.267 Sum_probs=129.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhc-C---CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLY-R---ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.|||+||++.+++.+||+||+.++...+ + ....+..++++++++.+++.+ .++++++||||||||++|||||+
T Consensus 65 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 144 (253)
T 2nq2_C 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA 144 (253)
T ss_dssp CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 357999999999998899999999875322 2 123445677889999999976 78899999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
++|++|||||||+|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|+ +..|+++++..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999999999999999999777 9999999999999965 99999999999 89999988754
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.6e-35 Score=254.34 Aligned_cols=141 Identities=22% Similarity=0.334 Sum_probs=126.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC-
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS- 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~- 86 (249)
+.|||+||++.+|+.+||+||+.++.. ...+ +++++++++.+++.+ .++++.+||||||||++|||||+++|+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 73 LHRAYLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp HHEEEECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred ceEEEECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCc
Confidence 469999999999999999999997521 1222 456788999999976 788999999999999999999999999
Q ss_pred ------EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 ------LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 ------iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|++++.|+++++..
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999997779999999999999965 99999999999999999988854
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.6e-34 Score=251.96 Aligned_cols=144 Identities=22% Similarity=0.231 Sum_probs=126.5
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHH-h---cC---CCHHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYAS-L---YR---ISSEEFRAKMKELQEVLDLP-P-DHRTCS-TLSGGQVRRVSIAV 79 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQRv~iAr 79 (249)
.|||+||++.+++.+|+.||+.+... . ++ .+.++..++++++++.+++. . .++++. +||||||||++|||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 49999999999999999999987542 1 12 24455567888999999996 4 578887 59999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--cCEEEEEeCCEEEEecChhHHH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ--ANVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~--~Dri~vl~~G~iv~~g~~~el~ 153 (249)
||+++|++|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..|+++++.
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999999999999987669999999999999864 8999999999999999988764
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.4e-35 Score=260.11 Aligned_cols=146 Identities=25% Similarity=0.400 Sum_probs=125.3
Q ss_pred CcEEEEeCCCCCC--CCCCHHHHHHHHHH----hcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALF--DEFTIAETFQFYAS----LYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~--~~lTv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
+.|||+||++.++ ..+||+||+.++.. .++...++..++++++++.+++.+ .++++++||||||||++|||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 5699999997643 34699999987532 122223445677889999999976 7899999999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEecChhHHhc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI--IITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Ti--iivtH~l~~~~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+++|++|||||||+|||+.+++.+++.|++++++|+|| |++|||++++.. ||+|++|++|+++..|+++++..
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999987669999 999999999965 99999999999999999988764
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.3e-34 Score=253.09 Aligned_cols=142 Identities=25% Similarity=0.285 Sum_probs=120.9
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHh-cC--CCHHHHHHHHHHHHHHcCCC-C-CCCCcCc-CChHHHHHHHHHHHHhc
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASL-YR--ISSEEFRAKMKELQEVLDLP-P-DHRTCST-LSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~-~~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~-LSgGqkQRv~iArAL~~ 83 (249)
.+||+||++.+|+.+||+||+.++... .+ .+..+..+++.++++.++++ + .++++++ ||||||||++|||||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999986532 22 23445567788999999994 5 6888998 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc--cCEEEEEeCCEEEEecChhH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ--ANVVGLMRKGVLLAEKSPEE 151 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~--~Dri~vl~~G~iv~~g~~~e 151 (249)
+|++|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..|+++.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999987679999999999999975 59999999999999998873
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.3e-34 Score=253.41 Aligned_cols=145 Identities=23% Similarity=0.310 Sum_probs=122.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEF-----RAKMKELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.||||||++.+|+ .||+||+.++...+. ..++. ...+.++++.+ ++.. .++++.+||||||||++||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 93 TQVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred ccEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence 46999999999987 499999998643221 11221 12345667777 6765 688899999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+++|++|||||||+|||+.++..+++.|+++.+ +|+|||++||+++++..||+|++|++|++++.|+++++...
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999865 49999999999999877999999999999999999998764
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.8e-34 Score=256.56 Aligned_cols=144 Identities=26% Similarity=0.433 Sum_probs=117.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMK-----ELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.||||||++.+|+. ||+||+.|+... ...++..+..+ +.++.+ |+.. ..+...+||||||||++||||
T Consensus 128 ~~i~~v~Q~~~lf~~-Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 128 SHIGVVPQDTVLFND-TIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp HTEEEECSSCCCCSE-EHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred cceEEEecCCccCcc-cHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 469999999999975 999999986432 22333222221 112222 3332 356678999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|+++|++|||||||+|||+.++..+++.|+++. +++|+|+|||+++.+..||+|++|++|+|++.|+++++....
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~ 279 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 999999999999999999999999999999975 479999999999999889999999999999999999998753
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.6e-34 Score=247.26 Aligned_cols=139 Identities=25% Similarity=0.431 Sum_probs=117.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-----------P-DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQRv~ 76 (249)
+.||||||++.+|+ .||+||+.++.. ..+. +++.++++.+++. . .++++.+||||||||++
T Consensus 83 ~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~ 155 (247)
T 2ff7_A 83 RQVGVVLQDNVLLN-RSIIDNISLANP--GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIA 155 (247)
T ss_dssp HHEEEECSSCCCTT-SBHHHHHTTTCT--TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHH
T ss_pred hcEEEEeCCCcccc-ccHHHHHhccCC--CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHH
Confidence 46999999999987 599999987531 2222 2344555555543 2 34567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|||||+++|++|||||||+|||+.++..+++.|+++. +|+|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 156 iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 156 IARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999984 69999999999999867999999999999999999998754
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-33 Score=247.42 Aligned_cols=138 Identities=22% Similarity=0.291 Sum_probs=123.4
Q ss_pred CCcEE-EEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 8 STYIG-FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 8 ~~~Ig-~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.+++| |+||++.+ .+|++||+.++...+... +++++++++.+++. + .++++++||||||||++|||||+++
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 45799 99999987 689999999876554322 35678889999998 6 6889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cC-EEEEEeCCEEEEecChhHHHH
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-AN-VVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~D-ri~vl~~G~iv~~g~~~el~~ 154 (249)
|++|||||||+|||+.++..+++.|+++++ |||++||+++++.. || ++++|++|++++.|+++++..
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999753 99999999999865 99 999999999999999988864
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.5e-33 Score=243.71 Aligned_cols=139 Identities=28% Similarity=0.446 Sum_probs=116.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-----CCCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-----DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-----~~~~~~~LSgGqkQRv~ 76 (249)
+.||||||++.+|+ .||+||+.++.. .... +++.++++.+++ ++ .++++.+||||||||++
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~ 165 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKL--DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIA 165 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCC--CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHH
Confidence 56999999999987 599999987531 2222 234445555543 21 14567899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|||||+++|++|||||||+|||+.++..+++.|+++.+ |+|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 166 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999999854 8999999999998867999999999999999999998764
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-33 Score=244.08 Aligned_cols=141 Identities=23% Similarity=0.392 Sum_probs=120.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CC-----------CCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DH-----------RTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~-----------~~~~~LSgGqkQRv 75 (249)
.+.|||+||++.+|+. ||+||+.++.. .... .+++.++++.+++.+ .+ +++++||||||||+
T Consensus 75 ~~~i~~v~q~~~l~~~-tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv 148 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMAG-TIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL 148 (243)
T ss_dssp TTTCCEECCSSCCCCE-EHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred HhhEEEEcCCCccccc-cHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHH
Confidence 4579999999999885 99999987522 1222 234667778888754 33 34579999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|++|||||||+|||+.+++.+++.|++++ +|+|||++||+++++..||++++|++|+++..|+++++...
T Consensus 149 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999999999999999999999987 69999999999998867999999999999999999998764
No 33
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.98 E-value=3.3e-33 Score=239.21 Aligned_cols=133 Identities=20% Similarity=0.298 Sum_probs=114.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.|||+||++.+|+.+||+||+.++...++. ..+ +++++++++.+++...++++.+||||||||++|||||+++|++
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l 154 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI 154 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 46799999999999999999999988665543 122 4667889999999643778999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEE
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~i 143 (249)
|||||||+|||+.++..+++.|++++++|+|||++||+++++.. ||+++++ +|+|
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 155 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999987668999999999999976 8887754 5555
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.98 E-value=7.8e-33 Score=256.08 Aligned_cols=140 Identities=20% Similarity=0.257 Sum_probs=122.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCc-----------CChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCST-----------LSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~-----------LSgGqkQRv~ 76 (249)
+.||||||++.+|+ +||+||+.++. ... .+++.++++.+++.+ .++++++ |||||||||+
T Consensus 94 r~ig~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 94 KAFGVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp HTEEEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred CCEEEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 57999999999998 59999997432 222 345778899999975 6788877 9999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|||||+++|++|||||||||||+.++..+++.|+++. +|+|+|++||+++.+..||||++|++|+|++.|+++++....
T Consensus 166 lARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 166 LARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp HHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999999999864 589999999999776669999999999999999999998764
Q ss_pred C
Q psy4634 157 G 157 (249)
Q Consensus 157 ~ 157 (249)
.
T Consensus 245 ~ 245 (390)
T 3gd7_A 245 A 245 (390)
T ss_dssp S
T ss_pred C
Confidence 3
No 35
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.97 E-value=7.1e-32 Score=260.94 Aligned_cols=141 Identities=24% Similarity=0.377 Sum_probs=119.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC------------CCCCcCcCChHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP------------DHRTCSTLSGGQVRRV 75 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQRv 75 (249)
.++||||||++.+|+. |++||+.++.. .+.+. ++++++++.+++.+ .+++..+||||||||+
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~ 489 (582)
T 3b5x_A 416 RRHFALVSQNVHLFND-TIANNIAYAAE-GEYTR----EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRV 489 (582)
T ss_pred hcCeEEEcCCCccccc-cHHHHHhccCC-CCCCH----HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHH
Confidence 4579999999999986 99999998641 12232 34455555555432 2345689999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|++|||||||+|||+.+++.+.+.|+++. +|+|+|++||+++.++.||+|++|++|++++.|+++++.++
T Consensus 490 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 490 AIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999985 48999999999999988999999999999999999999865
No 36
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.4e-32 Score=262.83 Aligned_cols=144 Identities=30% Similarity=0.414 Sum_probs=118.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMK-----ELQEVL--DLPP-DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQRv~iAr 79 (249)
.++||||||++.+|+. |++||+.++.. ..+.++..+..+ +.++.+ |++. .+++..+||||||||++|||
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lAR 492 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHH
Confidence 3569999999999986 99999987643 223333333221 112222 3333 36677899999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||+++|++||||||||+||+.+++.+++.|+++. +|+|+|++||+++.+..||||++|++|++++.|+++|+.++
T Consensus 493 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999974 58999999999999988999999999999999999999875
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=8.1e-32 Score=233.62 Aligned_cols=140 Identities=24% Similarity=0.352 Sum_probs=112.7
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH---HHHHcCCCC------CCCCcCcCChHHHHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE---LQEVLDLPP------DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~---~l~~~~l~~------~~~~~~~LSgGqkQRv~iArA 80 (249)
.|||+||++.++ .+||+||+.++... ..+. .+++.+ +.+.+++.. .++++.+||||||||++||||
T Consensus 67 ~i~~v~Q~~~~~-~~tv~enl~~~~~~---~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 67 SVAYVPQQAWIQ-NDSLRENILFGCQL---EEPY-YRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp CEEEECSSCCCC-SEEHHHHHHTTSCC---CTTH-HHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCcCC-CcCHHHHhhCcccc---CHHH-HHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 589999998765 67999999976432 1111 122222 223344311 367789999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQ---RMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~---~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|+++|++|||||||+|||+.++..+++.|. ++. +|+|||++||+++.+..||++++|++|+++..|+++++...
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 999999999999999999999999999995 443 58999999999998867999999999999999999998764
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=2.2e-31 Score=257.45 Aligned_cols=140 Identities=29% Similarity=0.440 Sum_probs=116.9
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------C----C-CCCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------P----P-DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~----~-~~~~~~~LSgGqkQRv~ 76 (249)
++||||||++.+|+. ||+||+.++.. ..+.++ +.++++..++ + . ..++..+||||||||++
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~ 487 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRP--TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 487 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCS--SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred hheEEEeCCCccCcc-cHHHHHhcCCC--CCCHHH----HHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHH
Confidence 469999999999987 99999998632 223333 3333333332 2 1 23445799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|||||+++|++|||||||||||+.+++.+.+.++++. +|+|+|++||+++.++.||+|++|++|+++++|+++|+.++.
T Consensus 488 lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTT
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999999999974 579999999999999889999999999999999999998753
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=8.2e-32 Score=232.38 Aligned_cols=137 Identities=23% Similarity=0.278 Sum_probs=110.5
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CC-----CCCCcCcCChHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PP-----DHRTCSTLSGGQVRRVSI 77 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-----~~~~~~~LSgGqkQRv~i 77 (249)
.|||+||++.+|+. ||+||+.++.. ..... ..+.++.+++ +. .++++.+||||||||++|
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~l 141 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS---YDEYR----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 141 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC---CCHHH----HHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC---cChHH----HHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHH
Confidence 59999999999886 99999987532 12111 1222222222 11 234568999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQY-LQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
||||+++|++|||||||+|||+.++..+++. ++++. +|+|||++||+++++..||++++|++|++++.|+++++...
T Consensus 142 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred HHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999997 45654 48999999999999867999999999999999999998754
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=4.4e-31 Score=255.43 Aligned_cols=140 Identities=24% Similarity=0.391 Sum_probs=119.0
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------CC-CCCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-----------PP-DHRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~-~~~~~~~LSgGqkQRv~ 76 (249)
++||||||++.+|+. |++||+.++.. .+.+. ++++++++.+++ +. .+++..+||||||||++
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~ 490 (582)
T 3b60_A 417 NQVALVSQNVHLFND-TVANNIAYART-EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490 (582)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHTTTT-SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHH
T ss_pred hhCeEEccCCcCCCC-CHHHHHhccCC-CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 469999999999986 99999998641 12333 334455555544 22 34556899999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
|||||+++|++|||||||||||+.+++.+++.|+++.+ |+|+|++||+++.++.||+|++|++|++++.|+++|+.++
T Consensus 491 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999999999999999999999999999999999864 8999999999999888999999999999999999999875
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.6e-31 Score=259.30 Aligned_cols=140 Identities=26% Similarity=0.410 Sum_probs=116.7
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-C-----------CCCcCcCChHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-D-----------HRTCSTLSGGQVRRVS 76 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-----------~~~~~~LSgGqkQRv~ 76 (249)
++||||||++.+|+. |++||+.++.. ..+.++ +.++++..++.+ . .+...+||||||||++
T Consensus 429 ~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 429 SSIGIVLQDTILFST-TVKENLKYGNP--GATDEE----IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp HHEEEECTTCCCCSS-BHHHHHHSSST--TCCTTH----HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred hceEEEeCCCccccc-cHHHHHhcCCC--CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 469999999999975 99999997632 222222 334444444321 1 1223799999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|||||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.++.||+|++|++|++++.|+++|+.++.
T Consensus 502 iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTT
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999999999985 589999999999999889999999999999999999998763
No 42
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=1.8e-31 Score=278.50 Aligned_cols=145 Identities=31% Similarity=0.454 Sum_probs=119.6
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HH-HcCCCCCCC-----CcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QE-VLDLPPDHR-----TCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~-~~~l~~~~~-----~~~~LSgGqkQRv~iArA 80 (249)
++||||+|+|.+|+. |++|||.|+.. ..+.++..+.++.+ -+ .-.+++.+. .-.+||||||||++||||
T Consensus 492 ~~i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNC-TIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred hcccccCCcceeeCC-chhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 469999999999987 99999998743 33444444433321 01 112344322 236899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcC
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~ 157 (249)
+.++|+|||||||||+||+.+++.+++.|+++. +|+|+|++||+++.++.||+|++|++|+|++.|+++|+.++.+
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g 644 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQG 644 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTC
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhh
Confidence 999999999999999999999999999999975 5899999999999999999999999999999999999987643
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=2.3e-31 Score=258.01 Aligned_cols=141 Identities=30% Similarity=0.461 Sum_probs=116.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCC-------C-----CCCCcCcCChHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKELQEVLDLP-------P-----DHRTCSTLSGGQVRRV 75 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-------~-----~~~~~~~LSgGqkQRv 75 (249)
++||||||++.+|+. |++||+.++...+ +.+. ++++++++.+++. + ..+...+||||||||+
T Consensus 418 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv 492 (595)
T 2yl4_A 418 SKIGTVSQEPILFSC-SIAENIAYGADDPSSVTA----EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492 (595)
T ss_dssp HSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCH----HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH
T ss_pred hceEEEccCCcccCC-CHHHHHhhcCCCccccCH----HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 469999999999985 9999999864321 1232 3455666666542 1 1233489999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHh
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~ 155 (249)
+|||||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.++.||+|++|++|++++.|+++|+.++
T Consensus 493 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp HHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC----
T ss_pred HHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999865 8999999999999978999999999999999999998763
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=4.4e-32 Score=283.00 Aligned_cols=147 Identities=25% Similarity=0.440 Sum_probs=120.8
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HH-HcCCCC-CCCCc----CcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QE-VLDLPP-DHRTC----STLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~-~~~l~~-~~~~~----~~LSgGqkQRv~iAr 79 (249)
.++||||||+|.+|+. |++|||.|+......+.++..+.++.+ -+ .-.+++ .+..+ .+||||||||++|||
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred HhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 4679999999999997 999999987433334555444433321 11 113343 23333 579999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
||+++|+|||||||||+||+++.+.+++.|+++. +|+|+|+++|+++.+..||||+||++|+|++.|+|+||+++.
T Consensus 1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC
T ss_pred HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999999999853 589999999999999999999999999999999999999864
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=8.1e-30 Score=265.42 Aligned_cols=144 Identities=30% Similarity=0.474 Sum_probs=119.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHHc--CCCC-CCCCcCcCChHHHHHHHHHHH
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE-----LQEVL--DLPP-DHRTCSTLSGGQVRRVSIAVT 80 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~-~~~~~~~LSgGqkQRv~iArA 80 (249)
+.||||||+|.+|+. ||+||+.++.. ..+.++..+.++. .++.+ |++. ..+...+||||||||++||||
T Consensus 464 ~~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARa 540 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540 (1284)
T ss_dssp HHEEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHH
Confidence 469999999999987 99999998743 3344444444332 22332 2221 345567999999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhc
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~ 156 (249)
|+++|++||||||||+||+.+++.+++.++++. +|+|+|++||+++++..||+|++|++|++++.|+++++..+.
T Consensus 541 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp HHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTT
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999998864 589999999999999889999999999999999999998753
No 46
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=5.6e-30 Score=228.46 Aligned_cols=135 Identities=22% Similarity=0.271 Sum_probs=107.2
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------C-----CCCCcCcCChHHHHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-------P-----DHRTCSTLSGGQVRRVSI 77 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-----~~~~~~~LSgGqkQRv~i 77 (249)
+|||+||++.+|+. ||+||+. +. ..... +..+.++.+++. . .++++.+||||||||++|
T Consensus 100 ~i~~v~Q~~~l~~~-tv~enl~-~~---~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 100 RISFCSQNSWIMPG-TIKENII-GV---SYDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170 (290)
T ss_dssp CEEEECSSCCCCSS-BHHHHHH-TT---CCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHH
T ss_pred EEEEEeCCCccCcc-cHHHHhh-Cc---ccchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHH
Confidence 59999999999885 9999998 32 11221 122233333331 1 234468999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 78 AVTLLHTPSLVILDEPTSGLDPMLAHYFWQYL-QRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 78 ArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
||||+++|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++++..||++++|++|+++..|+++++..
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999999999999999974 5554 5899999999999886799999999999999999999865
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=4.6e-29 Score=242.47 Aligned_cols=141 Identities=23% Similarity=0.236 Sum_probs=123.2
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYA-SLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
..|||+||++.+++.+||.|++.... ..+ ...+++.++++.+++.+ .++++++|||||||||+|||||+++|+
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~ 491 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDAD 491 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCS
T ss_pred eEEEEEecCccCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 56999999998877889999887641 111 11356778899999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEeC--CEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMRK--GVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~~--G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..++++|+++++ +|+|||++|||++++.. |||+++|++ |+++..|+++++.+
T Consensus 492 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999999864 59999999999999976 999999986 88888999988865
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=2.6e-29 Score=261.55 Aligned_cols=157 Identities=28% Similarity=0.469 Sum_probs=123.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH--HHHc-CCCC-----CCCCcCcCChHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL--QEVL-DLPP-----DHRTCSTLSGGQVRRVSIAV 79 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~--l~~~-~l~~-----~~~~~~~LSgGqkQRv~iAr 79 (249)
.++||||||++.+|+. |++||+.++......+.++..+.++.. -+.. .++. ......+||||||||++|||
T Consensus 1106 r~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iAR 1184 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184 (1284)
T ss_dssp TTSCEEEESSCCCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHH
T ss_pred HhceEEECCCCccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHH
Confidence 4579999999999875 999999876433334444444433321 1111 2222 12334689999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHHhcCCC
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVD 159 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~~~~~~ 159 (249)
||+++|++|||||||+|||+.+++.+++.|+++ .+|+|+|++|||++++..||||++|++|++++.|+++++.++.+
T Consensus 1185 al~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g-- 1261 (1284)
T 3g5u_A 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG-- 1261 (1284)
T ss_dssp HHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCS--
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCC--
Confidence 999999999999999999999999999999885 45999999999999998899999999999999999999998643
Q ss_pred cHHHHHHHHHhhh
Q psy4634 160 SLEEVFLRLCHQQ 172 (249)
Q Consensus 160 ~l~~~~~~~~~~~ 172 (249)
.|.+++..+
T Consensus 1262 ----~y~~l~~~q 1270 (1284)
T 3g5u_A 1262 ----IYFSMVSVQ 1270 (1284)
T ss_dssp ----HHHHHHHHH
T ss_pred ----HHHHHHHHH
Confidence 455555443
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=3.5e-29 Score=240.37 Aligned_cols=141 Identities=23% Similarity=0.247 Sum_probs=122.4
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFY-ASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
..|||+||++..++.+||.|++... ...+. ..++++++++.+++.+ .++++.+|||||||||+|||||+.+|+
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~ 421 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDAD 421 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-----CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCS
T ss_pred ceEEEEecCCcCCCCCcHHHHHHhhhccCCC-----HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4699999999877788999988754 11111 1345778899999975 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEeC--CEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMRK--GVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~~--G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..++++|+++++ .|.|||++|||++++.. ||||++|++ |+++..|+++++..
T Consensus 422 lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999999864 59999999999999976 999999986 78888999988765
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.5e-29 Score=242.49 Aligned_cols=144 Identities=21% Similarity=0.211 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
...++|+||+.......||.|++... ..+... ....++++++.+++.+ .++++++|||||||||+|||||+++|+
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~ 487 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPAD 487 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCS
T ss_pred CCcEEEecccccccCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 34699999998766567999987532 222111 1235667899999976 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEeC--CEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMRK--GVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~~--G~iv~~g~~~el~~~ 155 (249)
+|||||||+|||+.++..++++|+++.+ .|+|||+||||++++.. ||||++|++ |+++..|+|+++.+.
T Consensus 488 lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 488 IYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp EEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999864 59999999999999976 999999996 899999999999874
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=1.4e-28 Score=236.08 Aligned_cols=144 Identities=20% Similarity=0.216 Sum_probs=120.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|+||+.......||.||+.+....+ ... ....++++++.+++.. .++++++|||||||||+|||||+++|+
T Consensus 329 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~ 405 (538)
T 3ozx_A 329 KQILSYKPQRIFPNYDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEAD 405 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred CeeeEeechhcccccCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 467999999987666789999998742211 111 1245678889999975 789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEeC--CEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMRK--GVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~~--G~iv~~g~~~el~~ 154 (249)
+|||||||+|||+.++..++++|+++++ .|+|||+||||++++.. ||||++|++ |.....+++.++..
T Consensus 406 lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999975 49999999999999976 999999986 56666677766543
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=1.1e-28 Score=242.14 Aligned_cols=134 Identities=25% Similarity=0.391 Sum_probs=101.7
Q ss_pred CCCCCHHHHHHHHHHhcC--CCHH-------HHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCCC--E
Q psy4634 21 FDEFTIAETFQFYASLYR--ISSE-------EFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTPS--L 87 (249)
Q Consensus 21 ~~~lTv~enl~~~~~~~~--~~~~-------~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P~--i 87 (249)
++.+||.||+.++..... .... +..++ .++++.+||.+ .++++++|||||||||+|||||+++|+ +
T Consensus 147 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l 225 (670)
T 3ux8_A 147 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 225 (670)
T ss_dssp ----CC--------------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE
T ss_pred ccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 456799999987543211 0010 01111 23578899974 589999999999999999999999998 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
|||||||+||||.++..+++.|++++++|.|||+||||++.+..||+|++| ++|+++++|+++++...
T Consensus 226 LlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 226 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 299 (670)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTC
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcC
Confidence 999999999999999999999999988899999999999987779999999 89999999999999765
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=6.4e-28 Score=236.67 Aligned_cols=127 Identities=30% Similarity=0.466 Sum_probs=110.8
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q psy4634 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGL 97 (249)
Q Consensus 23 ~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P---~iLlLDEPtsgL 97 (249)
.+|+.||+.+... . . . .++..+.++.+++.. .++++.+|||||||||+|||||+++| ++|||||||+||
T Consensus 504 ~ltv~e~l~~~~~---~-~-~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~L 577 (670)
T 3ux8_A 504 DMTVEDALDFFAS---I-P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 577 (670)
T ss_dssp TSBHHHHHHHTTT---C-H-H-HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTC
T ss_pred hCCHHHHHHHHHH---h-h-h-HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCC
Confidence 4799999987532 1 1 1 234567788899863 58899999999999999999999987 499999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 98 D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
|+.++..++++|++++++|+|||+||||++.+..||||++| ++|+|+++|+++++...
T Consensus 578 D~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 578 HVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 99999999999999988899999999999998779999999 89999999999999754
No 54
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=4.7e-27 Score=236.53 Aligned_cols=127 Identities=27% Similarity=0.427 Sum_probs=111.7
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCC
Q psy4634 24 FTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGLD 98 (249)
Q Consensus 24 lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P---~iLlLDEPtsgLD 98 (249)
+|+.|++.|... .+ ...+..++++.+||.. .++++.+|||||||||+|||||+++| ++|||||||+|||
T Consensus 767 ~tv~eal~f~~~---~~---~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD 840 (916)
T 3pih_A 767 MTVDEALEFFKN---IP---SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840 (916)
T ss_dssp SBHHHHHHHTTT---CH---HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred CCHHHHHHHHhc---ch---hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence 678888877532 11 2345678899999964 47889999999999999999999876 7999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHhc
Q psy4634 99 PMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIASY 156 (249)
Q Consensus 99 ~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~~ 156 (249)
+.+++.+++.|++++++|.|||+||||++++..||+|++| ++|+|+++|+++++.+..
T Consensus 841 ~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 841 FEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 9999999999999988899999999999999889999999 899999999999998753
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.94 E-value=1.5e-26 Score=233.67 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=119.5
Q ss_pred cEEEEeCCC-CCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 10 YIGFMPQET-ALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 10 ~Ig~v~Q~~-~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
+++|++|++ .+++.+|+.||+.+ ..++. ++++.++++.+|++ . .++++++||||||||++|||||+.+|+
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~ 568 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 478999985 67888999999975 22222 46788899999995 4 588999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCCEEE-EecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLL-AEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G~iv-~~g~~~el~~ 154 (249)
+|||||||+|||+.++..+.+.|++ .|.|+|++|||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 569 lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 569 ILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999988 58999999999999976 9999999999997 5799988865
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=1.5e-26 Score=222.07 Aligned_cols=124 Identities=23% Similarity=0.335 Sum_probs=106.5
Q ss_pred CcEEEEeCCCCCCCC---CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQETALFDE---FTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~---lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
..+++++|+..+++. .|+.|++... . ..++++++++.+|+.. .++++++|||||||||+|||||+++
T Consensus 106 ~~~~~~~q~~~~~~~~~~~~v~e~~~~~----~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 106 IRPVVKPQYVDLIPKAVKGKVIELLKKA----D-----ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp CCCEEECSCGGGSGGGCCSBHHHHHHHH----C-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhhhcchhhhccHHHHHhhh----h-----HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 358899997644331 3899987531 1 1245778899999976 7899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCC
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKG 141 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G 141 (249)
|++|||||||++||+.++..+.++|++++++|+|||++|||++++.. ||+|++|++|
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999998789999999999999976 9999999865
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=1.6e-26 Score=224.61 Aligned_cols=124 Identities=23% Similarity=0.329 Sum_probs=106.2
Q ss_pred CcEEEEeCCCCCCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 9 TYIGFMPQETALFD---EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~---~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
..+++++|....++ ..|+.||+... .. .++++++++.+++.+ .++++++|||||||||+|||||+++
T Consensus 176 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~ 246 (607)
T 3bk7_A 176 IRPVVKPQYVDLLPKAVKGKVRELLKKV----DE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRK 246 (607)
T ss_dssp CCCEEECSCGGGGGGTCCSBHHHHHHHT----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred cceEEeechhhhchhhccccHHHHhhhh----HH-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 35789998753322 13999988631 11 235678899999986 6899999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc-cCEEEEEeCC
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKG 141 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~-~Dri~vl~~G 141 (249)
|++|||||||++||+.++..+.++|++++++|+|||+||||++++.. ||+|++|+++
T Consensus 247 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 247 AHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999998789999999999999976 9999999865
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=7.3e-25 Score=220.31 Aligned_cols=132 Identities=25% Similarity=0.426 Sum_probs=116.3
Q ss_pred CCCCHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC--CE
Q psy4634 22 DEFTIAETFQFYASLYRISS----------EEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP--SL 87 (249)
Q Consensus 22 ~~lTv~enl~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P--~i 87 (249)
..+||.|++.|...+ +++. +++.+++ +.++.+||+. .++++.+|||||||||+||++|+.+| ++
T Consensus 450 ~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 450 TAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp HTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 458999999996543 4555 3456666 4578999974 58999999999999999999999985 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 88 LlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
|||||||+||||.....+++.|++|++.|.|||+|+||++++..||+|++| ++|+++++|+++++...
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 999999999999999999999999987899999999999998789999999 79999999999998753
No 59
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=1.4e-24 Score=218.32 Aligned_cols=127 Identities=30% Similarity=0.466 Sum_probs=110.1
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCC
Q psy4634 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGL 97 (249)
Q Consensus 23 ~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P---~iLlLDEPtsgL 97 (249)
.+|+.|++.|+.. .+ . ..+..++++.++|.. .++++.+|||||||||+||++|+++| ++|||||||+||
T Consensus 806 ~ltv~e~l~~~~~---~~--~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGL 879 (972)
T 2r6f_A 806 DMTVEDALDFFAS---IP--K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 879 (972)
T ss_dssp TSBHHHHHHHTCS---CH--H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTC
T ss_pred hcCHHHHHHHHhc---ch--h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCC
Confidence 4577888776432 11 1 234567899999974 58899999999999999999999875 999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 98 D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
|+.++..+++.|++++++|.|||++||+++++..||+|++| ++|++++.|+++++...
T Consensus 880 D~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 880 HVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 99999999999999988899999999999998779999999 79999999999999864
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.91 E-value=1.2e-24 Score=219.12 Aligned_cols=134 Identities=27% Similarity=0.427 Sum_probs=113.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCCC--
Q psy4634 21 FDEFTIAETFQFYASLYRISS----------EEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTPS-- 86 (249)
Q Consensus 21 ~~~lTv~enl~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P~-- 86 (249)
+..+|+.+++.|.... .++. ++.++ ..+.+..+||.. .++++.+|||||||||+|||||+++|+
T Consensus 409 ~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~-~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~ 486 (916)
T 3pih_A 409 FTELSISEELEFLKNL-NLTEREREIVGELLKEIEK-RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGV 486 (916)
T ss_dssp HHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHHH-HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSC
T ss_pred hhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHHH-HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCc
Confidence 4557899999875432 2211 12222 345677889974 589999999999999999999999887
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHhc
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIASY 156 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~~ 156 (249)
+|||||||+||||.....++++|++++++|.|||+||||++.+..||+|++| ++|+++++|+++++....
T Consensus 487 lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 487 IYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 9999999999999999999999999988899999999999998779999999 999999999999998753
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=1.6e-24 Score=216.50 Aligned_cols=111 Identities=24% Similarity=0.378 Sum_probs=102.8
Q ss_pred HHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy4634 46 AKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHT---PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120 (249)
Q Consensus 46 ~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~---P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tii 120 (249)
+++.++++.++|.. .++++.+|||||||||+||++|+++ |++|||||||+|||+..+..++++|++++++|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999975 4888999999999999999999996 799999999999999999999999999988899999
Q ss_pred EEecChhHHhccCEEEEE------eCCEEEEecChhHHHHhc
Q psy4634 121 ITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIASY 156 (249)
Q Consensus 121 ivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~~ 156 (249)
++|||++++..||+|++| ++|+|+++|+++++....
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 999999999669999999 799999999999997653
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=1.1e-24 Score=219.52 Aligned_cols=133 Identities=24% Similarity=0.375 Sum_probs=116.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcC--CC
Q psy4634 21 FDEFTIAETFQFYASLYRISS----------EEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHT--PS 86 (249)
Q Consensus 21 ~~~lTv~enl~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~--P~ 86 (249)
+..+||.|++.|. ...+++. +++.+++ +.++.+||+. .++++.+|||||||||+||++|+.+ |+
T Consensus 466 ~~~ltV~e~l~f~-enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~ 543 (993)
T 2ygr_A 466 VCELSIADCADFL-NALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGV 543 (993)
T ss_dssp SSHHHHHHHHHTT-TTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred HhhCCHHHHHHHH-HhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCc
Confidence 4568999999984 3334555 4456666 3478899973 5899999999999999999999999 59
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
+|||||||+||||...+.+++.|++|++.|.|||+|+||++++..||+|++| ++|++++.|+++++...
T Consensus 544 llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 544 LYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 9999999999999999999999999988899999999999998789999999 79999999999999864
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.91 E-value=3.4e-25 Score=212.60 Aligned_cols=96 Identities=21% Similarity=0.359 Sum_probs=89.0
Q ss_pred HHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 46 AKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 46 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
++++++++.+++.. .++++++|||||||||+|||||+++|++|||||||++||+.++..+.++|+++++ |+|||+|||
T Consensus 117 ~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsH 195 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDH 195 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECS
T ss_pred HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEe
Confidence 35677899999976 7899999999999999999999999999999999999999999999999999865 999999999
Q ss_pred ChhHHhc-cCEEEEEeCCE
Q psy4634 125 YIEEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 125 ~l~~~~~-~Dri~vl~~G~ 142 (249)
|++++.. ||+|++|++|.
T Consensus 196 dl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 196 DLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp CHHHHHHHCSEEEEEEEET
T ss_pred ChHHHHhhCCEEEEecCCc
Confidence 9999976 99999998754
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=4.1e-24 Score=215.50 Aligned_cols=126 Identities=25% Similarity=0.392 Sum_probs=109.1
Q ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCC
Q psy4634 24 FTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP---SLVILDEPTSGLD 98 (249)
Q Consensus 24 lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P---~iLlLDEPtsgLD 98 (249)
+|+.|++.|+.. .+ . ..+..++++.++|.. .++++.+|||||||||+||++|+++| ++|||||||+|||
T Consensus 825 ltv~e~l~~~~~---~~-~--~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD 898 (993)
T 2ygr_A 825 MSIEEAAEFFEP---IA-G--VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLH 898 (993)
T ss_dssp SBHHHHHHHSTT---CH-H--HHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCC
T ss_pred ccHHHHHHHhhc---ch-H--HHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCC
Confidence 567777765432 11 1 234567899999964 58889999999999999999999875 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 99 PMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 99 ~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
+.++..+++.|++++++|.|||++|||++++..||+|++| ++|++++.|+++++...
T Consensus 899 ~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 899 FDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhC
Confidence 9999999999999988899999999999998779999999 79999999999999864
No 65
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3e-24 Score=208.56 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 46 AKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 46 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
++++++++.+++.. .++++++|||||||||+|||||+++|++|||||||+|||+.++..+.++|++++++|+|||++||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56788999999986 78999999999999999999999999999999999999999999999999999888999999999
Q ss_pred ChhHHhc-cCEEEEEeCCEE
Q psy4634 125 YIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 125 ~l~~~~~-~Dri~vl~~G~i 143 (249)
+++++.. ||+|++|++|..
T Consensus 280 dl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 280 DLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp CHHHHHHHCSEEEEEESCTT
T ss_pred CHHHHHHhCCEEEEEeCCcc
Confidence 9999976 999999988653
No 66
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.89 E-value=3e-23 Score=167.83 Aligned_cols=83 Identities=29% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCCcCcCChHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCE
Q psy4634 61 HRTCSTLSGGQVRRVSIA------VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iA------rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dr 134 (249)
++++++||||||||++|| |||+++|+++||||||+|||+.++..+.+.|+++.++|+|||++||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 567899999999999876 89999999999999999999999999999999987779999999999943345999
Q ss_pred EEEE--eCCEE
Q psy4634 135 VGLM--RKGVL 143 (249)
Q Consensus 135 i~vl--~~G~i 143 (249)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 56654
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=1.3e-23 Score=192.70 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=79.6
Q ss_pred CCCcCcCChHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCE
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLL------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dr 134 (249)
++++++||||||||++||+||+ ++|++|||||||+||||.++..+++.|++++++|.|||+|||+++.+..||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4678899999999999999999 7999999999999999999999999999998789999999999998666999
Q ss_pred EEEEeCCEEEE
Q psy4634 135 VGLMRKGVLLA 145 (249)
Q Consensus 135 i~vl~~G~iv~ 145 (249)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999974
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=6.7e-23 Score=204.88 Aligned_cols=113 Identities=24% Similarity=0.399 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q psy4634 42 EEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTP--SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ 117 (249)
Q Consensus 42 ~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQRv~iArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 117 (249)
+++.++++ .++.+||+. .++++.+|||||||||+||++|+.+| ++|||||||+|||+...+.++++|++|++.|.
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 34566665 577899974 58999999999999999999999999 59999999999999999999999999988899
Q ss_pred EEEEEecChhHHhccCEEEEE------eCCEEEEecChhHHHHh
Q psy4634 118 TIIITTHYIEEARQANVVGLM------RKGVLLAEKSPEELIAS 155 (249)
Q Consensus 118 TiiivtH~l~~~~~~Dri~vl------~~G~iv~~g~~~el~~~ 155 (249)
|||+|+|+++.+..||+|++| ++|++++.|+++++...
T Consensus 433 TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 433 SLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp EEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred EEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 999999999987779999999 79999999999998764
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.87 E-value=5.8e-23 Score=207.57 Aligned_cols=101 Identities=29% Similarity=0.395 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCCC---CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy4634 45 RAKMKELQEVLDLPP---DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121 (249)
Q Consensus 45 ~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiii 121 (249)
+++++++++.+|+.. .++++++||||||||++|||||+++|++|||||||+|||+.++..+.+.|+++ |.|||+
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIi 953 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVII 953 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEE
Confidence 356788999999963 37889999999999999999999999999999999999999999999988764 579999
Q ss_pred EecChhHHhc-cCEEEEEeCCEEEEecC
Q psy4634 122 TTHYIEEARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 122 vtH~l~~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
+|||++++.. ||++++|++|+++..|+
T Consensus 954 ISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 954 ITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp ECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred EECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999976 99999999999987664
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.84 E-value=1.5e-20 Score=173.36 Aligned_cols=80 Identities=24% Similarity=0.344 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE----eC
Q psy4634 67 LSGGQVRRVSIAVTLLHTP--SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM----RK 140 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl----~~ 140 (249)
||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|.|||+|||+++.+..||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 5999999999999999999 9999999999999999999999999987 689999999999887679999999 99
Q ss_pred CEEEEec
Q psy4634 141 GVLLAEK 147 (249)
Q Consensus 141 G~iv~~g 147 (249)
|+++...
T Consensus 375 G~~~~~~ 381 (415)
T 4aby_A 375 GRTVSHV 381 (415)
T ss_dssp TEEEEEE
T ss_pred CceEEEE
Confidence 9987653
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.2e-23 Score=194.64 Aligned_cols=137 Identities=12% Similarity=0.058 Sum_probs=107.1
Q ss_pred CCcEEEEeCCCC---CCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHH--H
Q psy4634 8 STYIGFMPQETA---LFDEFTIAETFQFYASL-YRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVT--L 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~---l~~~lTv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArA--L 81 (249)
.+.++|+||+.. +++.+|+.||+ |+... .+.. ..+++.++++.+|+....+ +.+||||||||+++||| |
T Consensus 178 ~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL 252 (460)
T 2npi_A 178 QQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRL 252 (460)
T ss_dssp TSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeeeeccchhhcccccccchhhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHh
Confidence 567999999984 34567999998 65432 1211 1234456677888875222 78999999999999999 9
Q ss_pred hcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh------HHhc-cCE-----EEEEe-CCEE
Q psy4634 82 LHTPSL----VILDE-PTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE------EARQ-ANV-----VGLMR-KGVL 143 (249)
Q Consensus 82 ~~~P~i----LlLDE-PtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~------~~~~-~Dr-----i~vl~-~G~i 143 (249)
+.+|++ ||||| ||++||+. +..+.++++++ |+|++++||+.+ ++.. ||+ |++|+ +|++
T Consensus 253 ~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~i 328 (460)
T 2npi_A 253 HLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV 328 (460)
T ss_dssp HHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTC
T ss_pred ccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcE
Confidence 999999 99999 99999999 55566555543 789999999988 7765 999 99999 9999
Q ss_pred EEecChhHHHH
Q psy4634 144 LAEKSPEELIA 154 (249)
Q Consensus 144 v~~g~~~el~~ 154 (249)
+ .|+++++..
T Consensus 329 v-~g~~~~~~~ 338 (460)
T 2npi_A 329 S-AVDDVYKRS 338 (460)
T ss_dssp C-CCCHHHHHH
T ss_pred E-ECCHHHHhh
Confidence 9 999988743
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.79 E-value=1.6e-19 Score=172.11 Aligned_cols=80 Identities=26% Similarity=0.350 Sum_probs=74.2
Q ss_pred CCcCcC-ChHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEE
Q psy4634 62 RTCSTL-SGGQVRRVSIAVTLLHTP--SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLM 138 (249)
Q Consensus 62 ~~~~~L-SgGqkQRv~iArAL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl 138 (249)
+++++| ||||||||+||+||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||+++.+..||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 456788 999999999999999999 99999999999999999999999999977 89999999999988779999999
Q ss_pred eCCE
Q psy4634 139 RKGV 142 (249)
Q Consensus 139 ~~G~ 142 (249)
++|.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 6553
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=5e-19 Score=159.11 Aligned_cols=91 Identities=27% Similarity=0.301 Sum_probs=76.5
Q ss_pred CCCCcCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEE
Q psy4634 60 DHRTCSTLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV 135 (249)
Q Consensus 60 ~~~~~~~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri 135 (249)
.++++.+||||||||++||+||+ .+|++|||||||++||+..+..+.+.|+++. +|.|+|++||+.+....||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 46678999999999999999997 6899999999999999999999999999974 589999999997655669987
Q ss_pred --EEEeCCEEEE-ecChhH
Q psy4634 136 --GLMRKGVLLA-EKSPEE 151 (249)
Q Consensus 136 --~vl~~G~iv~-~g~~~e 151 (249)
++|.+|+... ..+.++
T Consensus 292 ~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEESSSCEEEEECCC--
T ss_pred EEEEEeCCEEEEEEEEcch
Confidence 8888886533 345544
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.78 E-value=3.3e-19 Score=161.47 Aligned_cols=79 Identities=29% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCCcCcCChHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCE
Q psy4634 61 HRTCSTLSGGQVR------RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134 (249)
Q Consensus 61 ~~~~~~LSgGqkQ------Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dr 134 (249)
++++++||||||| |+++|++++.+|++|||||||+||||..+..+.++|+++.++|.|||++||+.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 5678999999999 6788888899999999999999999999999999999987778999999999654455999
Q ss_pred EEEEe
Q psy4634 135 VGLMR 139 (249)
Q Consensus 135 i~vl~ 139 (249)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 75
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.78 E-value=8.7e-19 Score=145.05 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=71.9
Q ss_pred CCCCcCcCChHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEE
Q psy4634 60 DHRTCSTLSGGQVRRVSIAVTLLH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV 135 (249)
Q Consensus 60 ~~~~~~~LSgGqkQRv~iArAL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri 135 (249)
..+++.+||||||||++||++++. +|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+......||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence 356678999999999999999984 4699999999999999999999999999754 57899999998777779999
Q ss_pred EEE--eCCEE
Q psy4634 136 GLM--RKGVL 143 (249)
Q Consensus 136 ~vl--~~G~i 143 (249)
+.+ .+|..
T Consensus 137 ~~v~~~~g~s 146 (173)
T 3kta_B 137 IGVSMRDGVS 146 (173)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCEE
Confidence 855 57754
No 76
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.76 E-value=5.7e-19 Score=161.64 Aligned_cols=86 Identities=22% Similarity=0.266 Sum_probs=78.2
Q ss_pred CCCcC-cCChHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 61 HRTCS-TLSGGQVRRVSIAVTLL---------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 61 ~~~~~-~LSgGqkQRv~iArAL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
+++++ .||||||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++|| ++.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LAP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CCT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-ccc--
Confidence 44566 89999999999999999 8999999999999999999999999998863 69999999 444
Q ss_pred ccCEEEEEeCCEEEEecChhHH
Q psy4634 131 QANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 131 ~~Dri~vl~~G~iv~~g~~~el 152 (249)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998876
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.72 E-value=1.1e-18 Score=143.04 Aligned_cols=72 Identities=10% Similarity=0.100 Sum_probs=65.0
Q ss_pred cCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCcEEEEEecChh
Q psy4634 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----------------LAHYFWQYLQRMSSNGQTIIITTHYIE 127 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~----------------~~~~i~~~L~~l~~~g~TiiivtH~l~ 127 (249)
....|||||||++||||++.+|++|+|||||++||+. .+..+++.|++++++|.|+|++||+++
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 3556999999999999999999999999999999999 568899999988777999999999999
Q ss_pred HHhccCEE
Q psy4634 128 EARQANVV 135 (249)
Q Consensus 128 ~~~~~Dri 135 (249)
++..++++
T Consensus 161 ~~~~~~~~ 168 (171)
T 4gp7_A 161 EVEEVVFE 168 (171)
T ss_dssp HHHHEEEE
T ss_pred Hhhhhhhc
Confidence 99776554
No 78
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.68 E-value=1.9e-16 Score=144.92 Aligned_cols=77 Identities=31% Similarity=0.339 Sum_probs=67.9
Q ss_pred CCcCcCChHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCE
Q psy4634 62 RTCSTLSGGQVRRV------SIAVTLLHT-PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134 (249)
Q Consensus 62 ~~~~~LSgGqkQRv------~iArAL~~~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dr 134 (249)
+++++||||||||+ ++|++++.+ |++|||||||+|||+..+..+.+.|.++. ++.+||+|||+.+....||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRELEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGGGGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHHHHhhCCE
Confidence 45679999999988 567899999 99999999999999999999999999974 35799999999874345999
Q ss_pred EEEEe
Q psy4634 135 VGLMR 139 (249)
Q Consensus 135 i~vl~ 139 (249)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 79
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=1.3e-16 Score=148.57 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=71.6
Q ss_pred CCCcCcCChHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEE
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLL----HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~ 136 (249)
.+++.+||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.++|.++|++||+......||+++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~ 407 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALV 407 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEE
Confidence 4556789999999999999999 589999999999999999999999999998656899999999977666799999
Q ss_pred EEe
Q psy4634 137 LMR 139 (249)
Q Consensus 137 vl~ 139 (249)
++.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 80
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.68 E-value=3.2e-17 Score=135.81 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=67.6
Q ss_pred CCCCcCcCChHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe---cChhHH
Q psy4634 60 DHRTCSTLSGGQVRRVSIAVT-----LLHTPSLVILDE--PTSGLDPMLAHYFWQYLQRMSSNGQTIIITT---HYIEEA 129 (249)
Q Consensus 60 ~~~~~~~LSgGqkQRv~iArA-----L~~~P~iLlLDE--PtsgLD~~~~~~i~~~L~~l~~~g~Tiiivt---H~l~~~ 129 (249)
.++++.+||||||||++||+| ++.+|++++||| ||++||+..++.+.+.+++ .+.|+|++| |+.+.+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~ 146 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLV 146 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHH
Confidence 467788999999999999996 999999999999 9999999999999888865 467788888 588888
Q ss_pred hc-cCEEEEEeCCEEEE
Q psy4634 130 RQ-ANVVGLMRKGVLLA 145 (249)
Q Consensus 130 ~~-~Dri~vl~~G~iv~ 145 (249)
.. ||+ .+|+++.
T Consensus 147 ~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 147 KEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHTC----TTCEEEE
T ss_pred HHHHhc----CCcEEEE
Confidence 76 887 5566654
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.65 E-value=5.8e-19 Score=150.00 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=63.3
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHH-HHHH----HhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHh
Q psy4634 8 STYIGFMPQETALFDEFTIAETF-QFYA----SLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLL 82 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl-~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~ 82 (249)
.+.+||+||++ .||+ .+.. ....... .++++++++. ++ |||||++|||||+
T Consensus 65 ~~~ig~v~q~~--------~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl------------Gq~qrv~lAraL~ 120 (208)
T 3b85_A 65 GEKLGFLPGTL--------NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI------------VEVAPLAYMRGRT 120 (208)
T ss_dssp TCCCCSSCC--------------CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS------------EEEEEGGGGTTCC
T ss_pred hcceEEecCCH--------HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC------------chHHHHHHHHHHh
Confidence 45799999986 3444 2211 1111111 2345556664 33 9999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ 131 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~ 131 (249)
++|++|||||||+| ++..+++.|+++ ++|+||| +|||++++..
T Consensus 121 ~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 121 LNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp BCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred cCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 99999999999999 899999999998 6699999 9999987753
No 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.54 E-value=3.1e-19 Score=150.24 Aligned_cols=121 Identities=8% Similarity=0.038 Sum_probs=95.0
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHH----H--HhcCCCHHHHHHHHHHH------HHHcCCCC-CCCCcCcCChHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFY----A--SLYRISSEEFRAKMKEL------QEVLDLPP-DHRTCSTLSGGQVRR 74 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~----~--~~~~~~~~~~~~~~~~~------l~~~~l~~-~~~~~~~LSgGqkQR 74 (249)
.+.+||+||++.+|+.+|+.+++... . ..++.+.++.++++++. ++.+++.. .++++++||
T Consensus 63 ~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------ 136 (207)
T 1znw_A 63 VDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------ 136 (207)
T ss_dssp CBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE------
T ss_pred cCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE------
Confidence 35699999999888888888776421 1 33455666666666665 55566643 466677888
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEecChhHHhc-cCEEEEEe
Q psy4634 75 VSIAVTLLHTPSLVILDEPTSGL----DPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEARQ-ANVVGLMR 139 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPtsgL----D~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~~~-~Dri~vl~ 139 (249)
+|+.+|++++|||||+|+ |+..++.+++.++++++ .|.|+|++|||++++.. ||+|++|.
T Consensus 137 -----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 -----VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp -----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred -----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999999998 88899999999999975 48999999999999976 99999984
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.53 E-value=4.8e-15 Score=141.46 Aligned_cols=88 Identities=9% Similarity=-0.034 Sum_probs=79.5
Q ss_pred HcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCcEEEEEecCh-
Q psy4634 54 VLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM-----LAHYFWQYLQRMSSNGQTIIITTHYI- 126 (249)
Q Consensus 54 ~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~-----~~~~i~~~L~~l~~~g~TiiivtH~l- 126 (249)
..++.. .+..+.+|||||+||+++|+++..+|+++++| ||+|||+. .+..+.++++.+++.|.|+|++||+.
T Consensus 340 ~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~ 418 (525)
T 1tf7_A 340 RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQ 418 (525)
T ss_dssp HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSS
T ss_pred hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECccc
Confidence 345533 56778999999999999999999999999999 99999999 99999999999988899999999999
Q ss_pred ---------hHHhc-cCEEEEEeCCE
Q psy4634 127 ---------EEARQ-ANVVGLMRKGV 142 (249)
Q Consensus 127 ---------~~~~~-~Dri~vl~~G~ 142 (249)
..+.. ||+|++|++|+
T Consensus 419 ~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 419 FMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred ccCcccccCcccceeeeEEEEEEEEE
Confidence 66766 99999999987
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.51 E-value=2.3e-17 Score=153.46 Aligned_cols=119 Identities=8% Similarity=-0.041 Sum_probs=95.0
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChH--HHHHHHHHHHHhc------
Q psy4634 12 GFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG--QVRRVSIAVTLLH------ 83 (249)
Q Consensus 12 g~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG--qkQRv~iArAL~~------ 83 (249)
++++|++ .++.+|++||+.++.. +.+++++++.+++...+..+. ||+| ||||++||+||++
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~~---------~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~ 179 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGST---------NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFY 179 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGGS---------SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEE
T ss_pred EEecccc-ccCCeeehHhhcccch---------HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeE
Confidence 7899985 5677899998765421 234677888888875434444 9999 9999999999999
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEecChhH--Hhc-cCEEE-EEeCC
Q psy4634 84 ----TPSLVILDEPTSGLDPMLAHYFWQYLQRMS-----SNG----QTIIITTHYIEE--ARQ-ANVVG-LMRKG 141 (249)
Q Consensus 84 ----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-----~~g----~TiiivtH~l~~--~~~-~Dri~-vl~~G 141 (249)
+|++++|||||+|||+.++.++++.|+++. +.| .+++++||++++ ++. ||++. .|..|
T Consensus 180 lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 180 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp EEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred EEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 999999999999999999999999999984 323 678999999987 765 88874 45444
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.42 E-value=7.2e-15 Score=131.38 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=89.0
Q ss_pred cEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC-
Q psy4634 10 YIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS- 86 (249)
Q Consensus 10 ~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~- 86 (249)
.++|++|++. +++.+|++||+.+... .+.. ..+++.+|+.+ .++++++|| |||++||||++.+|+
T Consensus 155 ~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e 222 (302)
T 3b9q_A 155 GCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNE 222 (302)
T ss_dssp TCEEECCC--CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSE
T ss_pred CceEEEecCCccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCe
Confidence 5999999998 8888899999987542 1211 12456677765 566788999 999999999999999
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEec---------ChhHHhc-cCEEEEEeCCEE
Q psy4634 87 -LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTH---------YIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 87 -iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH---------~l~~~~~-~Dri~vl~~G~i 143 (249)
+|+|| ||+|||+.++ ++++.+ .|.|+|++|| .++.+.. ++.|.++..|+.
T Consensus 223 ~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 223 ILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp EEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred eEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999 9999999865 345543 4899999999 4455544 789999999965
No 86
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.39 E-value=8.1e-17 Score=144.31 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=83.0
Q ss_pred EEEEeCCCCCCCCCCHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 11 IGFMPQETALFDEFTIAE-TFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 11 Ig~v~Q~~~l~~~lTv~e-nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
++|++|++.+|.. |+++ |+.++. ..+. .+.+.++.+ ++. .+ ..+|||||||| ||||+++|++|
T Consensus 155 ~~~v~q~~~lf~~-ti~~~ni~~~~---~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iL 219 (305)
T 2v9p_A 155 LSFANHKSHFWLA-SLADTRAALVD---DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLL 219 (305)
T ss_dssp ECGGGTTSGGGGG-GGTTCSCEEEE---EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEE
T ss_pred EEEecCccccccc-cHHHHhhccCc---cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEE
Confidence 5678999998875 8887 887641 1221 334445543 443 23 67999999999 99999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHH
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEEL 152 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el 152 (249)
| ||+||+.++..+.. .||+++.+..||+| +|++|++++.|+++++
T Consensus 220 l----Ts~LD~~~~~~i~~--------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 220 V----TSNIDVQAEDRYLY--------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp E----EESSCSTTCGGGGG--------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred E----ECCCCHHHHHHHHH--------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 9 99999999988862 19999988789999 9999999999999988
No 87
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.38 E-value=3.3e-13 Score=136.53 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=75.6
Q ss_pred CcCcCChHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEecChhHHhccCEEEEE
Q psy4634 63 TCSTLSGGQVRRVSIAVTL--LHTPSLVILDEPTSGLDPMLAHYF-WQYLQRMSSN-GQTIIITTHYIEEARQANVVGLM 138 (249)
Q Consensus 63 ~~~~LSgGqkQRv~iArAL--~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl 138 (249)
....+|+||+++..+|+++ +.+|+++||||||+||||.....+ +.+++.+.++ |.|+|++||+.+....||++..+
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v 797 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTV 797 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTE
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhccccee
Confidence 3467888888888888888 999999999999999999999888 7777888764 99999999998777779999999
Q ss_pred eCCEEEEecChhHHH
Q psy4634 139 RKGVLLAEKSPEELI 153 (249)
Q Consensus 139 ~~G~iv~~g~~~el~ 153 (249)
++|++...++.+++.
T Consensus 798 ~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 798 NNLHVTALTTEETLT 812 (934)
T ss_dssp EEEEEEEEEETTEEE
T ss_pred EeeEEEEEecCCcEE
Confidence 999999888776653
No 88
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.34 E-value=6.3e-14 Score=128.13 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=91.0
Q ss_pred CcEEEEeCCCC-CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 9 TYIGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~-l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
..|+|++|++. +++.+|++||+.+... .+.. ..+++.+|+.+ .++.+++|| |||++||||++.+|+
T Consensus 211 ~~i~~v~q~~~~~~p~~tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~ 278 (359)
T 2og2_A 211 TGCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPN 278 (359)
T ss_dssp HTCEEECCSSSSCCHHHHHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCS
T ss_pred cCeEEEEecccccChhhhHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCC
Confidence 35999999998 8888899999987643 1111 12456677765 566788999 999999999999999
Q ss_pred --EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEec---------ChhHHhc-cCEEEEEeCCEE
Q psy4634 87 --LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTH---------YIEEARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 87 --iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH---------~l~~~~~-~Dri~vl~~G~i 143 (249)
+|+|| ||+|||+.++. +++.+ .|.|+|++|| .++.+.. ++.|.++..|+.
T Consensus 279 e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 279 EILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999 99999998653 34443 4899999999 3455544 789999999965
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.31 E-value=2e-14 Score=126.46 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=75.4
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.+||++|++.+++.+||.||+.|+....+.. ..+.+.+.++ .. .++...+||||||||+++|||++.
T Consensus 46 ~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~--- 115 (270)
T 3sop_A 46 IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---CWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC--- 115 (270)
T ss_dssp CCEEEESCC----CCEEEEECCCC--CCSBCTT---CSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---
T ss_pred eeeeEEEeecCCCcCCceEEechhhhhhcccHH---HHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---
Confidence 467999999999999999999998875443311 1122222222 11 245568999999999999999887
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+++||||++|||+.. .++++.+.+. .++|++.|..+.+
T Consensus 116 lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 116 LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGS
T ss_pred eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccC
Confidence 999999999999987 4566666655 8999998887654
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.29 E-value=4.4e-12 Score=111.69 Aligned_cols=79 Identities=11% Similarity=0.203 Sum_probs=62.3
Q ss_pred cCcCChHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CcEEEEEecCh--h-----
Q psy4634 64 CSTLSGGQ-VRRVSIAVTLLHTPSLVILDEPTS---G---LDP-MLAHYFWQYLQRMSSN-GQTIIITTHYI--E----- 127 (249)
Q Consensus 64 ~~~LSgGq-kQRv~iArAL~~~P~iLlLDEPts---g---LD~-~~~~~i~~~L~~l~~~-g~TiiivtH~l--~----- 127 (249)
+.++|.++ +||+. |+++.++|+++++||||+ + +|+ .....+.+.|++++++ |+|||++||+. +
T Consensus 127 ~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~ 205 (296)
T 1cr0_A 127 FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAH 205 (296)
T ss_dssp CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC--------
T ss_pred CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCcccccccc
Confidence 46788998 67777 999999999999999999 5 566 6778899999999765 99999999995 4
Q ss_pred ---------------HHhc-cCEEEEEeCCEE
Q psy4634 128 ---------------EARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 128 ---------------~~~~-~Dri~vl~~G~i 143 (249)
.+.. ||+|++|++|+.
T Consensus 206 ~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 206 EEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CCC---CHHHHCSEEEEEEEC--
T ss_pred ccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5665 999999999875
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.24 E-value=3.1e-14 Score=127.81 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=90.1
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
+.+++|+|++.+++. |+.||+.+.. .++.+.....+.+.+.++.++-...+.++.+|||||+||+++|+|++.+|++|
T Consensus 121 ~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~il 198 (312)
T 3aez_A 121 PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDIL 198 (312)
T ss_dssp CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEE
T ss_pred CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEE
Confidence 579999999988887 9999986532 13444444456677788887732345678899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHh-c-cCEEEEEeCCE
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEAR-Q-ANVVGLMRKGV 142 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~-~-~Dri~vl~~G~ 142 (249)
|||||++.+|+.. ..+.+. + .+|+++|+.+... . ++|.+.+.+|+
T Consensus 199 IlDep~~~~d~~~--------~~l~~~~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 199 ILEGLNVLQTGPT--------LMVSDLFD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEECTTTTCCCSS--------CCGGGGCS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred EECCccccCCcch--------HHHHHhcC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 9999999998621 122222 3 4577778887753 3 77776666654
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.24 E-value=9.2e-12 Score=127.16 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=70.0
Q ss_pred CCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCEEEEE
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLA-HYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLM 138 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dri~vl 138 (249)
+..+++|++|++ +++|++++.+|+++|||||++|+|+... ..++++|+.+.++ |.|+|++||+++.+.. ||++.++
T Consensus 847 ~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 847 SGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp ---CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred hchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee
Confidence 345788888876 9999999999999999999999999985 5588999999876 9999999999999976 9998887
Q ss_pred eCCEEE--EecChh
Q psy4634 139 RKGVLL--AEKSPE 150 (249)
Q Consensus 139 ~~G~iv--~~g~~~ 150 (249)
+|++. .+|+++
T Consensus 926 -~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 926 -LGHMACMVENECE 938 (1022)
T ss_dssp -EEEEEEC------
T ss_pred -cCeEEEEEecCcc
Confidence 58887 344443
No 93
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.22 E-value=1e-11 Score=125.31 Aligned_cols=83 Identities=18% Similarity=0.089 Sum_probs=63.8
Q ss_pred HHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCcEEEEEecChh
Q psy4634 51 LQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFW-QYLQRMSS-NGQTIIITTHYIE 127 (249)
Q Consensus 51 ~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~-~g~TiiivtH~l~ 127 (249)
++..+++.+ ..+..+++|+||+|++.++++ +.+|+++||||||+||||.....+. .+++.+.+ .|.|+|++||+++
T Consensus 719 i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 719 IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 344556544 456678999999999999999 8999999999999999999999887 77777765 5999999999998
Q ss_pred HHhccCE
Q psy4634 128 EARQANV 134 (249)
Q Consensus 128 ~~~~~Dr 134 (249)
.+..||+
T Consensus 798 l~~l~~~ 804 (918)
T 3thx_B 798 VCELEKN 804 (918)
T ss_dssp GGGHHHH
T ss_pred HHHHHhh
Confidence 7765554
No 94
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.20 E-value=2.7e-14 Score=133.71 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=96.3
Q ss_pred CCcEEEEeCC-CCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 8 STYIGFMPQE-TALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 8 ~~~Ig~v~Q~-~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+.++|++|+ ..+++.+|+.+|+.+.+..++.. . ++++.. . +.+..||+|| ||++|| +.+|+
T Consensus 212 ~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~----~---~~v~~~-----l-d~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 212 ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR----G---QHVLLI-----M-DSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp HTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT----T---CEEEEE-----E-ECHHHHHHHH-HHHHHH---TTCCC
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC----C---CCHHHH-----H-HhHHHHHHHH-HHHHHH---hCCCc
Confidence 4579999995 55677789999998876543210 0 000111 1 1267899999 999999 88998
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS---N-GQ-----TIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+ |+|||+..+..+.+++.++.+ + |. ||+++|||++ ...||++++|.+|+++.++++.++..
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred c------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 8 999999999999999999865 3 75 9999999999 44599999999999999999888754
No 95
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.11 E-value=5.3e-12 Score=113.96 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEE
Q psy4634 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVL 143 (249)
Q Consensus 69 gGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~i 143 (249)
|||+||++||+||.++|++++|||||+ .++++.|+.+...+.|+++++|+.+....|||+++|.+|..
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 899999999999999999999999998 24677788765434589999999995566999999988853
No 96
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.11 E-value=9.5e-11 Score=98.04 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=65.1
Q ss_pred cCChHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCcEEEEEecCh--------hHHhc-
Q psy4634 66 TLSGGQVRRVSIAVTLLHTPS--LVILDEPTSGL--DPMLAHYFWQYLQRMSS-NGQTIIITTHYI--------EEARQ- 131 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~~P~--iLlLDEPtsgL--D~~~~~~i~~~L~~l~~-~g~TiiivtH~l--------~~~~~- 131 (249)
..|.++.++...+.+..++|+ ++++||||+++ |+.....+++.|+++++ .|.|||++||+. ..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 459999999888888888999 99999999887 99999999999999865 499999999999 44665
Q ss_pred cCEEEEEeCCE
Q psy4634 132 ANVVGLMRKGV 142 (249)
Q Consensus 132 ~Dri~vl~~G~ 142 (249)
||+|++|++.+
T Consensus 183 ~d~vi~l~~~~ 193 (235)
T 2w0m_A 183 ADGIIRFRRMI 193 (235)
T ss_dssp CSEEEEEEEEE
T ss_pred eeEEEEEEEEe
Confidence 99999998754
No 97
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.07 E-value=8.2e-11 Score=99.87 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=58.0
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhCCcEEEEEecChhHH---------hc-
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD-----PMLAHYFWQYLQRMSSNGQTIIITTHYIEEA---------RQ- 131 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD-----~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~---------~~- 131 (249)
.+.++..+...+..-..+|++++|||||++|| +..++.+.++++.++++|+|||++||+++++ ..
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34455555555555568999999999999998 7777779999999877799999999999987 44
Q ss_pred c-CEEEEEeC
Q psy4634 132 A-NVVGLMRK 140 (249)
Q Consensus 132 ~-Dri~vl~~ 140 (249)
| |+|++|++
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 7 99999964
No 98
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.07 E-value=1.8e-10 Score=100.63 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=62.7
Q ss_pred HHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-CCcEEE
Q psy4634 48 MKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTS--GLDPMLA---HYFWQYLQRMSS-NGQTII 120 (249)
Q Consensus 48 ~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPts--gLD~~~~---~~i~~~L~~l~~-~g~Tii 120 (249)
..++++.+.+.+ .++++..||+||+|++ ++++.+|+++++||||+ ++|+... ..+++.|+++++ .|+|||
T Consensus 99 ~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 455677888765 5778899999998865 68889999999999999 9998544 788888888864 499999
Q ss_pred EEecChhHHh
Q psy4634 121 ITTHYIEEAR 130 (249)
Q Consensus 121 ivtH~l~~~~ 130 (249)
+++|+.....
T Consensus 176 ~i~H~~~~~~ 185 (279)
T 1nlf_A 176 FLHHASKGAA 185 (279)
T ss_dssp EEEEC-----
T ss_pred EEecCCCccc
Confidence 9999987653
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.00 E-value=2.5e-13 Score=113.56 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=89.3
Q ss_pred cEEEEeCCCCCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHH----HHHHHHHHHHh
Q psy4634 10 YIGFMPQETALF--DEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQ----VRRVSIAVTLL 82 (249)
Q Consensus 10 ~Ig~v~Q~~~l~--~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGq----kQRv~iArAL~ 82 (249)
.++|++|++.++ ..+|+.+++.+. ++.+.....+++.+.++.+++.. .+.+..++|+|| +||+++|++++
T Consensus 33 ~i~~v~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li 109 (211)
T 3asz_A 33 RVALLPMDHYYKDLGHLPLEERLRVN---YDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVI 109 (211)
T ss_dssp GEEEEEGGGCBCCCTTSCHHHHHHSC---TTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEE
T ss_pred CeEEEecCccccCcccccHHHhcCCC---CCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEE
Confidence 489999998776 567898886543 12222222345667778777764 456788999997 47889999999
Q ss_pred cCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH-HhCCcEEEEEecCh
Q psy4634 83 HTPSLVILDEPTSG-------LDPMLAHYFWQYLQRM-SSNGQTIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLDEPtsg-------LD~~~~~~i~~~L~~l-~~~g~TiiivtH~l 126 (249)
.+|.++++||||++ ||+.....+.+.+.+. .++|.|++.++|++
T Consensus 110 ~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 110 LEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999 9999999999999875 45699999999985
No 100
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.97 E-value=3.3e-11 Score=103.61 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=84.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCC
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS--SEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTP 85 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P 85 (249)
.+.++|++|+. +++.+|+.+++.+....+... .....+.+.+.++.+. ...++++.+||+||+||+++ ++++.+|
T Consensus 58 ~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~ 134 (245)
T 2jeo_A 58 QRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPA 134 (245)
T ss_dssp GCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCC
T ss_pred CCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCC
Confidence 45799999995 777889999998765433321 1111233444444331 22466789999999999988 6889999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH-hc-cCEEEEEeCCEEEEecChhHHHH
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA-RQ-ANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~-~~-~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
+++|||||....|.. +.++ .+.||+++||+...+ +. ++++ ++|+ +.+++..
T Consensus 135 ~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 135 DVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp SEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred CEEEEeCccccccHH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 999999999888864 2222 378999999975444 44 5544 6664 5666654
No 101
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.91 E-value=3.4e-10 Score=113.00 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=65.0
Q ss_pred cCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CcEEEEEecChhHHhccCEEEEEeCC
Q psy4634 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYF-WQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKG 141 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i-~~~L~~l~~~-g~TiiivtH~l~~~~~~Dri~vl~~G 141 (249)
.+++|+||++ ++.+...+.+|+++|||||++|+|+.....+ +.+++.+.++ |.|+|++||+.+.+..||++..+++|
T Consensus 667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANV 745 (800)
T ss_dssp ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEE
T ss_pred hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEE
Confidence 4567887765 4445556899999999999999999888775 7888888874 99999999999876668887777788
Q ss_pred EEEEec
Q psy4634 142 VLLAEK 147 (249)
Q Consensus 142 ~iv~~g 147 (249)
++....
T Consensus 746 ~~~~~~ 751 (800)
T 1wb9_A 746 HLDALE 751 (800)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776544
No 102
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.89 E-value=3.2e-11 Score=109.65 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=71.8
Q ss_pred CCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEecChhHHhccCE
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS--NGQ-----TIIITTHYIEEARQANV 134 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----TiiivtH~l~~~~~~Dr 134 (249)
+.+.+||+|| ||+++| +++|++ |+||||..+..+.+++.++.+ .|. ||+++|||++ ...||+
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~ 235 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDE 235 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-Chhhhh
Confidence 4578999999 899999 688887 999999999999999999864 487 9999999999 334999
Q ss_pred EEEEeCCEEEEecChhHHH
Q psy4634 135 VGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 135 i~vl~~G~iv~~g~~~el~ 153 (249)
+++|.+|+|+.+++++++.
T Consensus 236 v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHCSEEEEBCHHHHTTT
T ss_pred eEEeeCcEEEEeCCHHHcC
Confidence 9999999999999888764
No 103
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.88 E-value=7.8e-10 Score=109.91 Aligned_cols=65 Identities=29% Similarity=0.271 Sum_probs=56.1
Q ss_pred CcCChHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEecChhHHhcc
Q psy4634 65 STLSGGQVRRVSIAVTL--LHTPSLVILDEP---TSGLDPMLA-HYFWQYLQRMSSNGQTIIITTHYIEEARQA 132 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL--~~~P~iLlLDEP---tsgLD~~~~-~~i~~~L~~l~~~g~TiiivtH~l~~~~~~ 132 (249)
..+|+||+|++.+|+++ +.+|+++||||| |++||+.+. ..+.+.|.+ .|.|+|++||+.+....|
T Consensus 634 ~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 634 GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp -CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 45799999999999999 999999999999 999999886 467777765 489999999999887555
No 104
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.84 E-value=6.3e-09 Score=86.49 Aligned_cols=77 Identities=14% Similarity=0.012 Sum_probs=60.0
Q ss_pred CcCChHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CcEEEEEecChh-----
Q psy4634 65 STLSGGQ--VRRVSIAVTLLHT-PSLVILDEPTSGLDPML--------AHYFWQYLQRMSSN-GQTIIITTHYIE----- 127 (249)
Q Consensus 65 ~~LSgGq--kQRv~iArAL~~~-P~iLlLDEPtsgLD~~~--------~~~i~~~L~~l~~~-g~TiiivtH~l~----- 127 (249)
.++|+++ +|+++.+++++.+ |+++++||||+++|+.. ...+.+.|++++++ |.|+|+++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~ 162 (220)
T 2cvh_A 83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE 162 (220)
T ss_dssp ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence 3455554 5688888999986 99999999999999843 24456667777665 999999999875
Q ss_pred --------HHhc-cCEEEEEeCC
Q psy4634 128 --------EARQ-ANVVGLMRKG 141 (249)
Q Consensus 128 --------~~~~-~Dri~vl~~G 141 (249)
.+.. ||++++|++.
T Consensus 163 ~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 163 MTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred ccccCCCcceeecCcEEEEEEEe
Confidence 4555 9999999765
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.81 E-value=2.3e-09 Score=89.70 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=53.9
Q ss_pred CChHHH-HHHHHHHHHhc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEecC
Q psy4634 67 LSGGQV-RRVSIAVTLLH-------TPSLVILDEPTSGLDPM-------L-----AHYFWQYLQRMSSN-GQTIIITTHY 125 (249)
Q Consensus 67 LSgGqk-QRv~iArAL~~-------~P~iLlLDEPtsgLD~~-------~-----~~~i~~~L~~l~~~-g~TiiivtH~ 125 (249)
.+++++ +.+..+++++. +|++++|||||+++|+. . ...+++.|.+++++ |.|||++||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 444443 44666666665 99999999999999984 2 23677778777654 9999999996
Q ss_pred hhH----Hhc-cCEEEEEeCC
Q psy4634 126 IEE----ARQ-ANVVGLMRKG 141 (249)
Q Consensus 126 l~~----~~~-~Dri~vl~~G 141 (249)
.++ +.. ||++++|++|
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp C---------CCSEEEEEEEC
T ss_pred ccCcchhhHhhceEEEEEEec
Confidence 665 766 9999999875
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.79 E-value=2.5e-11 Score=108.05 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
+.+++++|+...+..+|++|+..++..... .+..+.....+.+. .++++.++|||||||+.+|||++ ++
T Consensus 63 ~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~~-----~~~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 63 EASTVEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYIDEQ-----FERYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp --CEEEEC---CCEEEEEEEEC-------------CTTHHHHHHHH-----HHHHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred eeEEEEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHHHHH-----HHHHHHHhCHHhhhhhhhhhhhh----ee
Confidence 458899999888888999999877543211 01111111121111 24667899999999999999886 99
Q ss_pred EEeCCCC-CCCHHHHHHHHHHHHHHHhC-CcEEEEEecChh
Q psy4634 89 ILDEPTS-GLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127 (249)
Q Consensus 89 lLDEPts-gLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~ 127 (249)
++||||+ |||+... ++++++.++ +.++|+++||+.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999998 5999873 566666554 889999999984
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.73 E-value=1.8e-08 Score=95.84 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=59.8
Q ss_pred HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH---------hc-cCEEE
Q psy4634 73 RRVSIAVTLL-HTPSLVILDEPTS-----GLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA---------RQ-ANVVG 136 (249)
Q Consensus 73 QRv~iArAL~-~~P~iLlLDEPts-----gLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~---------~~-~Dri~ 136 (249)
+.-.++.+|. .+|++++|||||+ +||+..++.++++++++++.|+|||++||+++++ .. ||+|+
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 4556666664 7899999999998 4699999999999999987899999999999984 55 99999
Q ss_pred EEeCC
Q psy4634 137 LMRKG 141 (249)
Q Consensus 137 vl~~G 141 (249)
+|++|
T Consensus 206 ~L~~~ 210 (525)
T 1tf7_A 206 ILRNV 210 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99984
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.73 E-value=1.4e-10 Score=112.60 Aligned_cols=119 Identities=9% Similarity=0.232 Sum_probs=81.9
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCE
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSL 87 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~i 87 (249)
.+.+||+||++.+++.+||.+|+.+.....+.. .-++. . +++.++.+..+.|++
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-------------~~~~s--~-----------~~i~l~i~~~~~p~L 149 (608)
T 3szr_A 96 RGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-------------GMGIS--H-----------ELITLEISSRDVPDL 149 (608)
T ss_dssp EEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-------------SSCCC--S-----------CCEEEEEEESSSCCE
T ss_pred eeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-------------ccccc--h-----------HHHHHHhcCCCCCce
Confidence 467999999999999999999998754321100 00111 1 122333344568999
Q ss_pred EEEeCC------CCCCCHHHHHHHHHHHHHHHh-C-CcEEEEEecChhHH--------hc-----cCEEEEEeCCEEEEe
Q psy4634 88 VILDEP------TSGLDPMLAHYFWQYLQRMSS-N-GQTIIITTHYIEEA--------RQ-----ANVVGLMRKGVLLAE 146 (249)
Q Consensus 88 LlLDEP------tsgLD~~~~~~i~~~L~~l~~-~-g~TiiivtH~l~~~--------~~-----~Dri~vl~~G~iv~~ 146 (249)
+|+||| |+|||+..+..+.++++++.+ . +.++++++|+++.+ +. +..|+++.++.++..
T Consensus 150 lLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 150 TLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDK 229 (608)
T ss_dssp EEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSS
T ss_pred eEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCc
Confidence 999999 999999999999999999743 3 78899999998632 11 356899999988877
Q ss_pred cChhHH
Q psy4634 147 KSPEEL 152 (249)
Q Consensus 147 g~~~el 152 (249)
|+.+++
T Consensus 230 g~~~~~ 235 (608)
T 3szr_A 230 GTEDKV 235 (608)
T ss_dssp SSTTCC
T ss_pred ccHHHH
Confidence 776543
No 109
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.67 E-value=4.8e-11 Score=101.16 Aligned_cols=117 Identities=8% Similarity=0.077 Sum_probs=77.1
Q ss_pred CCcEEEEeCCCCCCCCCC-HHHHHH---HHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHH-----H
Q psy4634 8 STYIGFMPQETALFDEFT-IAETFQ---FYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSI-----A 78 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lT-v~enl~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~i-----A 78 (249)
.+.++|+||++.+|+.++ ..+++. +....++.+.. .++++++...+...+ .+|||||+||+++ |
T Consensus 67 ~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~----~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~ 139 (218)
T 1z6g_A 67 KEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKS----EYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNAL 139 (218)
T ss_dssp CBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH----HHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCE
T ss_pred ccCCeEEECCHHHHHHhhhccchhhhhhcccccCCCcHH----HHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcE
Confidence 357899999887765433 111211 11122333332 344555543321111 5789999999999 8
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEe
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR 139 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~ 139 (249)
++++.+|++++|||||+++|..+...+.+.+.++.+ +.| ++| +..||.|++++
T Consensus 140 ~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h----~~~~d~iiv~~ 192 (218)
T 1z6g_A 140 YIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN----LLNFNLSIIND 192 (218)
T ss_dssp EEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT----TSCCSEEEECS
T ss_pred EEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc----ccCCCEEEECC
Confidence 999999999999999999999999999999988644 344 445 33467666543
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.65 E-value=3.3e-10 Score=101.16 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=69.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEE
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLV 88 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iL 88 (249)
..++|++|++.+++..|+++|+.+... .+.. ..+++..|+.+ .....++...+||++||||++.+|+.+
T Consensus 156 ~~i~~v~q~~~~~p~~~v~~~v~~~~~-~~~d--------~~llDt~G~~~--~~~~~~~eLs~~r~~iaRal~~~P~~~ 224 (304)
T 1rj9_A 156 LSIPVIQGPEGTDSAALAYDAVQAMKA-RGYD--------LLFVDTAGRLH--TKHNLMEELKKVKRAIAKADPEEPKEV 224 (304)
T ss_dssp HTCCEECCCTTCCHHHHHHHHHHHHHH-HTCS--------EEEECCCCCCT--TCHHHHHHHHHHHHHHHHHCTTCCSEE
T ss_pred cCceEEEeCCCCCHHHHHHHHHHHHHh-CCCC--------EEEecCCCCCC--chHHHHHHHHHHHHHHHHhhcCCCCeE
Confidence 358999999998888899999986532 1110 01122333322 222334445589999999999999954
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhH
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~ 128 (249)
+| .||+.+...+++.++++.++ |.|+|++||+-+.
T Consensus 225 lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 225 WL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp EE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred EE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 44 45555555677777777655 8999999998543
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.64 E-value=1.1e-08 Score=92.71 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHh-CCcEEEEEecChh
Q psy4634 68 SGGQVRRVSIAVTLL-------HTPSLVILDEPTSGLDPML------------AHYFWQYLQRMSS-NGQTIIITTHYIE 127 (249)
Q Consensus 68 SgGqkQRv~iArAL~-------~~P~iLlLDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~TiiivtH~l~ 127 (249)
|.+++|++.++++++ .+|+++++||||+++|+.. ...++..|.++++ .|.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 688999999999999 6899999999999999862 3556666777655 4999999999987
Q ss_pred HHhc-cCEEEEEeCCEEEEecC
Q psy4634 128 EARQ-ANVVGLMRKGVLLAEKS 148 (249)
Q Consensus 128 ~~~~-~Dri~vl~~G~iv~~g~ 148 (249)
.... ++.......|++++.+.
T Consensus 288 ~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 288 RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp --------------CCCCCTTC
T ss_pred ccccccCCccccCCcceEeecC
Confidence 6643 34455566676665544
No 112
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.60 E-value=1.4e-08 Score=88.66 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 73 RRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 73 QRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
-|++||+||.++|+++++|||| |+.+...+ ++. .+.|.||++++|+.+....|||++.|..
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 3899999999999999999999 99886543 443 3569999999999885555999887754
No 113
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.52 E-value=1.7e-09 Score=90.05 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=56.3
Q ss_pred CCCcCcCChHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEE----EecChhHHh
Q psy4634 61 HRTCSTLSGGQVRRV-SIAV---TLLHTPSLVILDE--PTSGLDPMLAHYFWQYLQRMSSNGQTIII----TTHYIEEAR 130 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv-~iAr---AL~~~P~iLlLDE--PtsgLD~~~~~~i~~~L~~l~~~g~Tiii----vtH~l~~~~ 130 (249)
.++...+|+|||+++ ++++ |++++|+++|||| |+..+|+...+.+.++++ ...|+|+ ++|+.+ ..
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~~~-~~ 152 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKGKP-LA 152 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCSSC-CT
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCCCc-hH
Confidence 344557999999988 4455 6899999999999 899999976555554443 4445553 349875 22
Q ss_pred ccCEEEEEeCCEEEEe
Q psy4634 131 QANVVGLMRKGVLLAE 146 (249)
Q Consensus 131 ~~Dri~vl~~G~iv~~ 146 (249)
.+|+|..+++|+|+.-
T Consensus 153 ~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 153 LVEEIRNRKDVKVFNV 168 (189)
T ss_dssp THHHHHTTCCSEEEEC
T ss_pred HHHHHeecCCcEEEEe
Confidence 3566666778888653
No 114
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.50 E-value=4.9e-08 Score=80.47 Aligned_cols=74 Identities=15% Similarity=0.044 Sum_probs=59.1
Q ss_pred HHHHHHHHHcCCCC--CCCCcCcCChHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q psy4634 46 AKMKELQEVLDLPP--DHRTCSTLSGGQVRR-VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI 119 (249)
Q Consensus 46 ~~~~~~l~~~~l~~--~~~~~~~LSgGqkQR-v~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Ti 119 (249)
..+.++++..+++. ...++..+|+||+|| +..+++++.+|+.+++|||||++|+.+..++++.|.++.++|.|.
T Consensus 127 ~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~~ 203 (210)
T 1pui_A 127 QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPV 203 (210)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccch
Confidence 34555666777764 256678999999999 899999999999999999999999999999999999987666553
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.49 E-value=2.8e-08 Score=90.54 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCC
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKG 141 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G 141 (249)
+||+||.++|+++++|||+ |+.+ .+.+.+++..|.|+++++|+.+.+..|||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999999999 6555 444445566799999999999988669999888544
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.34 E-value=1.2e-08 Score=94.79 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=59.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCC--
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPS-- 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~-- 86 (249)
..+++++|++.++..+|++||+.++....+ .+....+.+.++ .+++.+++||++||||++++|+
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~~~ 140 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNRVQ 140 (418)
T ss_dssp EEEECC------CEEEEEEECC--------------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-CC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCCee
Confidence 458899999988888999999987644221 111112222222 2466778889999999999999
Q ss_pred -EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 87 -LVILDEPT-SGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 87 -iLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
+|++|||| +|||+... ++++++. .+.++|++.|..+.
T Consensus 141 vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~Dl 179 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKADT 179 (418)
T ss_dssp EEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTTS
T ss_pred EEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEcccC
Confidence 99999999 69999874 4455554 37888888886654
No 117
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.28 E-value=8.5e-10 Score=90.44 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC-hhHHhc-cCEEEEEe
Q psy4634 68 SGGQVRRVSIAV------TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY-IEEARQ-ANVVGLMR 139 (249)
Q Consensus 68 SgGqkQRv~iAr------AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~-l~~~~~-~Dri~vl~ 139 (249)
|+||+|++.++. +++.+|+...+|+ ++|+..++. ++.+.++.+.+.|+|.+||. +++++. ||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 889999988888 9999999888884 899998888 88888876668899999999 999976 99998 9
Q ss_pred CCEEEEecChhHHH
Q psy4634 140 KGVLLAEKSPEELI 153 (249)
Q Consensus 140 ~G~iv~~g~~~el~ 153 (249)
+|+++.+|+++-+.
T Consensus 170 ~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 170 NPRFIFCMAGDPLE 183 (189)
T ss_dssp CGGGSCC-------
T ss_pred CCcEEEeecCCchh
Confidence 99999999887653
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.15 E-value=3.8e-06 Score=70.51 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=47.7
Q ss_pred cCChHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CcEEEEEecChhHH
Q psy4634 66 TLSGGQVRR-VSIAVTLL--HTPSLVILDEPTSGLDPM-------L-----AHYFWQYLQRMSSN-GQTIIITTHYIEEA 129 (249)
Q Consensus 66 ~LSgGqkQR-v~iArAL~--~~P~iLlLDEPtsgLD~~-------~-----~~~i~~~L~~l~~~-g~TiiivtH~l~~~ 129 (249)
..+..+... +.-+..++ ++|+++++|||++.+|+. . ...++..|.+++++ |.|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 355555433 33333343 589999999999999985 3 34455666666555 99999999976542
Q ss_pred -------------------h-ccCEEEEEeCC
Q psy4634 130 -------------------R-QANVVGLMRKG 141 (249)
Q Consensus 130 -------------------~-~~Dri~vl~~G 141 (249)
. .||.+++|++|
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------------------CCTTCEEEEEEEC
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 38999999865
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.15 E-value=2.5e-08 Score=84.83 Aligned_cols=54 Identities=24% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCEEEEecChhHHHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~iv~~g~~~el~~ 154 (249)
.++++||| ||+.++..+++.+. +|.||+++||++++++. |+ +++| .++++++..
T Consensus 107 ~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 107 TGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp TTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred cCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 47999999 99999999998875 58999999999999864 32 6677 567777764
No 120
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=6.1e-06 Score=66.69 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=42.8
Q ss_pred HHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 80 TLLHTPSLVILDEPTS-GLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 80 AL~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
..+.+|++|+||||++ ++|+..+..+.+++.+..++|+++|++||...+
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 3456999999999985 999999999999999887789999999997643
No 121
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.04 E-value=8.4e-08 Score=84.95 Aligned_cols=90 Identities=10% Similarity=0.047 Sum_probs=59.3
Q ss_pred cEEEEeCCCCCCCCCCHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHcCCC------C---CCCCcCcCChHHHHH
Q psy4634 10 YIGFMPQETALFDEFTIAETFQFYAS------LYRISSEEFRAKMKELQEVLDLP------P---DHRTCSTLSGGQVRR 74 (249)
Q Consensus 10 ~Ig~v~Q~~~l~~~lTv~enl~~~~~------~~~~~~~~~~~~~~~~l~~~~l~------~---~~~~~~~LSgGqkQR 74 (249)
.+.+|+|+..+++. +.++|+.+... .++.+.......+.+.++.+... . ...+-.++||||+||
T Consensus 64 ~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R 142 (290)
T 1odf_A 64 SIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDR 142 (290)
T ss_dssp CEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEE
T ss_pred eEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccc
Confidence 35556999887765 88999987521 12223222234445555554332 1 123347899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy4634 75 VSIAVTLLHTPSLVILDEPTSGLDPM 100 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPtsgLD~~ 100 (249)
+.+|++...+|+|+|+|||++++|+.
T Consensus 143 ~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 143 CPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cccccceEcCCCEEEEeCccccCCcc
Confidence 99973333399999999999999985
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.04 E-value=1.3e-08 Score=87.15 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=66.5
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHH--------hcCCCHHHHHHHHHHHHH--HcC------------CCC-CCCCcCcC
Q psy4634 11 IGFMPQETALFDEFTIAETFQFYAS--------LYRISSEEFRAKMKELQE--VLD------------LPP-DHRTCSTL 67 (249)
Q Consensus 11 Ig~v~Q~~~l~~~lTv~enl~~~~~--------~~~~~~~~~~~~~~~~l~--~~~------------l~~-~~~~~~~L 67 (249)
+++++|+..+++..++.+++..... +.+.+... ..++.+.+ .++ +.. .++++.+|
T Consensus 76 i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~l 153 (246)
T 2bbw_A 76 AKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPP 153 (246)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCC
Confidence 3445677777887899999976432 12322221 12222222 122 111 25677899
Q ss_pred ChHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q psy4634 68 SGGQVRRVSIAVTL-LHTPSLVILD----EPTSGLDPMLAHYFWQYLQRMSSNG 116 (249)
Q Consensus 68 SgGqkQRv~iArAL-~~~P~iLlLD----EPtsgLD~~~~~~i~~~L~~l~~~g 116 (249)
|| |+ +|+ +.+|++++|| |||++||+.++..+.+.++++.+++
T Consensus 154 Sg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 154 SG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 99 66 788 9999999999 9999999999999999999987654
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.83 E-value=2.3e-05 Score=72.28 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=44.4
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CcEEEEEecChh-------------------HHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLA------------HYFWQYLQRMSSN-GQTIIITTHYIE-------------------EAR 130 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~------------~~i~~~L~~l~~~-g~TiiivtH~l~-------------------~~~ 130 (249)
.+|+++++|||++.+|+... ..+++.|++++++ |.|||+++|... .+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997533 5677888888766 999999999831 234
Q ss_pred c-cCEEEEEeCC
Q psy4634 131 Q-ANVVGLMRKG 141 (249)
Q Consensus 131 ~-~Dri~vl~~G 141 (249)
. +|.+++|++|
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 4 8888888876
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.79 E-value=1.7e-07 Score=85.05 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=60.4
Q ss_pred cCcCChHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhcc
Q psy4634 64 CSTLSGGQVRRVSIAVTLL-HTPSLVILDE---PT------SGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQA 132 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~-~~P~iLlLDE---Pt------sgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~~ 132 (249)
+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.|+++.++ |.++++++|.-...+.+
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~ 335 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYN 335 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHH
Confidence 4466778888888888874 6999999999 65 589999999999999987554 89999999863222336
Q ss_pred CEEEEEeCCEEEEecChhHHH
Q psy4634 133 NVVGLMRKGVLLAEKSPEELI 153 (249)
Q Consensus 133 Dri~vl~~G~iv~~g~~~el~ 153 (249)
+++.++++ ++..++++|+.
T Consensus 336 ~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 336 QVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp HHHHHHHH--HTSCCCCSSCC
T ss_pred HHHHHHHH--HhcccchhHhh
Confidence 66655543 33444555543
No 125
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.74 E-value=2.5e-05 Score=62.00 Aligned_cols=46 Identities=11% Similarity=0.304 Sum_probs=38.6
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEEecCh
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT-IIITTHYI 126 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~T-iiivtH~l 126 (249)
+++.+|++|+||||++ +|+..+..+++++.++.++|++ +|++||..
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 4578999999999998 6666688899999998777888 88888853
No 126
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.74 E-value=7.8e-05 Score=69.46 Aligned_cols=96 Identities=10% Similarity=0.073 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH--------HHHHHHHHHHHHHHh
Q psy4634 46 AKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLL--HTPSLVILDEPTSGLDP--------MLAHYFWQYLQRMSS 114 (249)
Q Consensus 46 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~--~~P~iLlLDEPtsgLD~--------~~~~~i~~~L~~l~~ 114 (249)
.++.+.++.++... .-.....+|.++.+ +.++.++ ++|+++++|+++...++ .....+.+.|+.+++
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAk 351 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAR 351 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34445555544322 21123679999876 5666666 78999999999987743 334667777888876
Q ss_pred C-CcEEEEEec---------C--hh--------HHhc-cCEEEEEeCCEE
Q psy4634 115 N-GQTIIITTH---------Y--IE--------EARQ-ANVVGLMRKGVL 143 (249)
Q Consensus 115 ~-g~TiiivtH---------~--l~--------~~~~-~Dri~vl~~G~i 143 (249)
+ |.+||+++| + +. .++. ||.|++|+.++.
T Consensus 352 e~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 352 ELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 6 999999999 2 22 3555 999999988765
No 127
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=6.8e-05 Score=66.59 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=39.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+..+|+++++|||++ ||+.++..+.+.+.+.. ++.++|++||+.+.+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPI 177 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHH
Confidence 678999999999999 99999999999999853 478999999998654
No 128
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.53 E-value=2.5e-05 Score=71.22 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEE
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~ 136 (249)
+.+|+++|.++|+++++|||+ |+.+. ..+++. +..|.+++.++|+.+....|||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~-~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRA-AETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHH-HTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHH-HhcCCEEEEEECcchHHHHHHHHH
Confidence 579999999999999999999 77653 344544 356899999999866333366653
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.42 E-value=1.4e-05 Score=71.08 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=48.6
Q ss_pred HcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 54 VLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 54 ~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.+++....+...++|+||+||+..+++++.+|+++ ||| ..+.+.|++++ .+.||+++||+...
T Consensus 129 ~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 129 LVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID 191 (318)
T ss_dssp EEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC
T ss_pred EEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC
Confidence 34554322223489999999999999999999987 999 77888888874 58999999996533
No 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.42 E-value=3.4e-05 Score=70.24 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHH
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTL 81 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL 81 (249)
...+++++|+..+++..|++++ .+++.+.++..+++.++++.+++.. .+++..+|| ||+||++||+++
T Consensus 260 ~~~i~~v~q~~~l~dtpgv~e~-----~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 260 AARLYHFPHGGDVIDSPGVREF-----GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CCEEEECTTSCEEEECHHHHTC-----CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred EEEEEEECCCCEecCcccHHHh-----hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 4578999999988888889884 2345667777778888999999976 788899999 999999999875
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.00036 Score=58.27 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=43.4
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCcEEEEEecChhH--------Hhc-cCEEEEEeC
Q psy4634 83 HTPSLVILDEPTSGL--DPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE--------ARQ-ANVVGLMRK 140 (249)
Q Consensus 83 ~~P~iLlLDEPtsgL--D~~~~~~i~~~L~~l-~~~g~TiiivtH~l~~--------~~~-~Dri~vl~~ 140 (249)
.+|+++++|+|++.+ |+.....+...+.++ ++.|.||++++|.... +.. ||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 665555555555555 4559999999998875 344 899999975
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.25 E-value=6.1e-05 Score=69.80 Aligned_cols=66 Identities=23% Similarity=0.222 Sum_probs=50.1
Q ss_pred HHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEec
Q psy4634 52 QEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTH 124 (249)
Q Consensus 52 l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~TiiivtH 124 (249)
+..+++. ++++.+||+|++|++++|++|+.+|.++++ +.+|+... ...+.+.+ +.+.|.+++.+|-
T Consensus 240 L~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 240 LYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp EEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 3344554 567789999999999999999999999999 99999877 44444444 4445777776653
No 133
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.21 E-value=3e-05 Score=72.09 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=75.5
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcC-CC----HHHHHHHHHHHHHHc-CCC----C-CCCCc-----------Cc
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYR-IS----SEEFRAKMKELQEVL-DLP----P-DHRTC-----------ST 66 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~-~~----~~~~~~~~~~~l~~~-~l~----~-~~~~~-----------~~ 66 (249)
+.+||++|++.+++.+|+.||+.|+..... .. .+.......+.++.. ++. . .+..+ ..
T Consensus 82 ~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 82 QSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 469999999998888999999876532110 00 012334444555543 332 1 12221 24
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEecC
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTHY 125 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~TiiivtH~ 125 (249)
|+-.. +.++++|..+++++++|+|+..|.+.....+.+.+++ +...|.+|+.+|.+
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 55554 7999999999999999999999999999999999986 77779999998865
No 134
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.19 E-value=0.00095 Score=60.25 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCcEEEEEecChh------
Q psy4634 73 RRVSIAVTLLHT--PSLVILDEPTSGL----------DP---MLAHYFWQYLQRM----SSNGQTIIITTHYIE------ 127 (249)
Q Consensus 73 QRv~iArAL~~~--P~iLlLDEPtsgL----------D~---~~~~~i~~~L~~l----~~~g~TiiivtH~l~------ 127 (249)
|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++++ ++.|.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456678888755 9999999999988 33 2223455555555 344999999999653
Q ss_pred ----------HHhc-cCEEEEEeCCEEEEec
Q psy4634 128 ----------EARQ-ANVVGLMRKGVLLAEK 147 (249)
Q Consensus 128 ----------~~~~-~Dri~vl~~G~iv~~g 147 (249)
.++. ||.++.+++++++..|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 1444 8999999887766544
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.90 E-value=0.00019 Score=64.39 Aligned_cols=111 Identities=9% Similarity=0.004 Sum_probs=71.5
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHHHHHHHHHhcCCCEEE
Q psy4634 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVI 89 (249)
Q Consensus 11 Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQRv~iArAL~~~P~iLl 89 (249)
+.+++|...+++.+|++||+.++... +... -+++..|+.+ ..+.+.+|| .+++++..++.+++
T Consensus 185 v~~v~q~~~~~p~~~v~e~l~~~~~~-~~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llv 248 (328)
T 3e70_C 185 VKVIKHSYGADPAAVAYDAIQHAKAR-GIDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFV 248 (328)
T ss_dssp CEEECCCTTCCHHHHHHHHHHHHHHH-TCSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEE
T ss_pred ceEEeccccCCHHHHHHHHHHHHHhc-cchh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEE
Confidence 55899999888888999999875431 1000 0123334433 233345554 38999998888888
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhH---------Hhc-cCEEEEEeCCEEE
Q psy4634 90 LDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEE---------ARQ-ANVVGLMRKGVLL 144 (249)
Q Consensus 90 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~---------~~~-~Dri~vl~~G~iv 144 (249)
||.++. +.+.+.++.+.+ .|.|+|++||.-+. +.. .-.|.++..|+.+
T Consensus 249 LDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 249 GDALAG-------NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp EEGGGT-------THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred EecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 885553 355566666654 48999999995421 222 4578888888654
No 136
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.85 E-value=0.0004 Score=69.04 Aligned_cols=71 Identities=20% Similarity=0.185 Sum_probs=57.2
Q ss_pred CcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-ecChhHHhc-cC
Q psy4634 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTS-GLDPMLAHYFWQYLQRMSSNGQTIIIT-THYIEEARQ-AN 133 (249)
Q Consensus 63 ~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~Tiiiv-tH~l~~~~~-~D 133 (249)
.+.-+|.|+.+|..++++++.+++++++|||.. +||......+++.+.+.....++|++| ||+.+.+.. ++
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 355679999999999999999999999999997 999887777666666654456788885 999887643 44
No 137
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.71 E-value=0.0025 Score=56.08 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCcEEEE-EecChhHHhc-cCEEEEEeCCEEEE
Q psy4634 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS---SNGQTIII-TTHYIEEARQ-ANVVGLMRKGVLLA 145 (249)
Q Consensus 71 qkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~---~~g~Tiii-vtH~l~~~~~-~Dri~vl~~G~iv~ 145 (249)
..-+.++++ +++|+++|+| |+|+|+.....+.++.+-+. ..+.++++ ++|..+++.. ++++..++.+.++.
T Consensus 171 ~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 171 EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 334556664 4999999999 99999987766665544432 12334455 4999888865 88776677777776
Q ss_pred e
Q psy4634 146 E 146 (249)
Q Consensus 146 ~ 146 (249)
.
T Consensus 247 t 247 (296)
T 2px0_A 247 T 247 (296)
T ss_dssp E
T ss_pred e
Confidence 4
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.65 E-value=0.0002 Score=57.83 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=41.8
Q ss_pred CCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiivt 123 (249)
+.++..+|+|++||++++|++.++|+++ +|+...+.+++.+..+...+..+|.++
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECC
Confidence 3456789999999999999999999876 689888888888776543333344443
No 139
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.56 E-value=2.8e-06 Score=78.30 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=78.8
Q ss_pred EEeCCCCCCCCCCHHHHH--HHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCC--CEE
Q psy4634 13 FMPQETALFDEFTIAETF--QFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTP--SLV 88 (249)
Q Consensus 13 ~v~Q~~~l~~~lTv~enl--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P--~iL 88 (249)
++.+.+.++...+..|++ .|...++... .++..++.. .+..+..+||++ +| +++
T Consensus 88 ~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~-~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 88 TVFDIAGLTKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF-DDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp EEECTGGGCCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC-CTTCSSCCSSSS------------CHHHHHH
T ss_pred EEEeccccccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc-ccceeeeecccc------------Ccchhhh
Confidence 566777777666655544 3333322211 112222222 134455567653 99 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEecChhHHhc-cCEEE-EEeCC-EEEEecCh
Q psy4634 89 ILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEEARQ-ANVVG-LMRKG-VLLAEKSP 149 (249)
Q Consensus 89 lLDEPtsgLD~~~~~~i~~~L~~l-~~~g~TiiivtH~l~~~~~-~Dri~-vl~~G-~iv~~g~~ 149 (249)
++|||++++|+......++.+.++ .+.|.|++ +|.+..+.. ||++. +|++| +++..++.
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999999999999999997 66677764 999999876 99999 99999 88766643
No 140
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.46 E-value=0.00011 Score=65.49 Aligned_cols=104 Identities=14% Similarity=0.046 Sum_probs=64.6
Q ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhc
Q psy4634 8 STYIGFMPQETALFDEFTIAETFQFYASLYRIS----SEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLH 83 (249)
Q Consensus 8 ~~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~ 83 (249)
...|++++|...+++ ++.|++......++.. .....+.+...++.+++....+.+..||+|++||++++
T Consensus 102 ~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII----- 174 (334)
T ss_dssp TTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE-----
T ss_pred CCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce-----
Confidence 457999999877664 7888875444333321 12222344445555555334556789999999998655
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHhc-cCE
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANV 134 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~~-~Dr 134 (249)
.+||+.+..++.++|++.++. | ++|+.+.+.. |++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred -----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 789999999999999987543 4 3677766654 543
No 141
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.27 E-value=6.3e-05 Score=61.29 Aligned_cols=52 Identities=12% Similarity=0.159 Sum_probs=36.0
Q ss_pred cCChHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHHhCCc
Q psy4634 66 TLSGGQVRRVSIAVTLLHTPSLV-------ILDEPTSG---LDPMLAHYFWQYLQRMSSNGQ 117 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~~P~iL-------lLDEPtsg---LD~~~~~~i~~~L~~l~~~g~ 117 (249)
.|||||+||++||||++.+|++. .=|.|..+ +|......+.++|.+...+|.
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhccC
Confidence 49999999999999999999873 22444322 334456677778776666653
No 142
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.24 E-value=0.0063 Score=57.19 Aligned_cols=61 Identities=23% Similarity=0.249 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEecChhHH
Q psy4634 69 GGQVRRVSIAVTLLHTPSLVILDEP----------TSGLDPMLAHYFWQYLQRMS----SNGQTIIITTHYIEEA 129 (249)
Q Consensus 69 gGqkQRv~iArAL~~~P~iLlLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~TiiivtH~l~~~ 129 (249)
+++++|-.+++|....|.+|++||+ ++|.|+...+.+.+++..+. ..+..||.+||+.+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 6788999999999999999999999 44778777777777777653 2478899999998654
No 143
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.06 E-value=0.014 Score=54.89 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=53.3
Q ss_pred cCcCChHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 64 CSTLSGGQVRRVSIAVTLL--H---------------TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~--~---------------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+.+||||+|-.-+|.+-+ + .=.+++|||+ +-+|....+..+++++++ |.=+|++|=+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4789999999654444333 2 1257999999 999999999999999976 6778888877
Q ss_pred hHHh-ccCEEEEEe
Q psy4634 127 EEAR-QANVVGLMR 139 (249)
Q Consensus 127 ~~~~-~~Dri~vl~ 139 (249)
.+. .+|.++.+-
T Consensus 452 -~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 -NISPERGTTYKLV 464 (483)
T ss_dssp -SCCCSSSEEEECC
T ss_pred -hhhhccCceEEEE
Confidence 443 478777653
No 144
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.03 E-value=0.00025 Score=67.34 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCCCC---CCC-cCcCChHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHH
Q psy4634 42 EEFRAKMKELQEVLDLPPD---HRT-CSTLSGGQVRRV----------SIAVTLLHTPS-LVILDEPTSGLDPMLAHYFW 106 (249)
Q Consensus 42 ~~~~~~~~~~l~~~~l~~~---~~~-~~~LSgGqkQRv----------~iArAL~~~P~-iLlLDEPtsgLD~~~~~~i~ 106 (249)
+++++|. ++++..|+.+. ++. ...+|+||+|+. .+|+++...|. ++++||+++-+|. ....+.
T Consensus 241 ~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~-~~~~~~ 318 (512)
T 2ius_A 241 NEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT-VGKKVE 318 (512)
T ss_dssp HHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH-HHHHHH
T ss_pred HHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh-hhHHHH
Confidence 4566664 66777787542 111 246889988752 35667788898 8999999998883 334555
Q ss_pred HHHHHHH---hC-CcEEEEEecChh-H-----H-hc-cCEEEE
Q psy4634 107 QYLQRMS---SN-GQTIIITTHYIE-E-----A-RQ-ANVVGL 137 (249)
Q Consensus 107 ~~L~~l~---~~-g~TiiivtH~l~-~-----~-~~-~Dri~v 137 (249)
+.|.+++ +. |.++|++||+.+ . + .+ .+||.+
T Consensus 319 ~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 319 ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 5555543 33 889999999987 1 3 34 567765
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.97 E-value=9.9e-05 Score=65.24 Aligned_cols=69 Identities=7% Similarity=-0.092 Sum_probs=50.6
Q ss_pred cEEEEeCCCCCC-----CCCCHHHHH--HHH------HHhcC-CCHHHHHHHHHHHHHHcCCCC--CCCCcCcCChHHHH
Q psy4634 10 YIGFMPQETALF-----DEFTIAETF--QFY------ASLYR-ISSEEFRAKMKELQEVLDLPP--DHRTCSTLSGGQVR 73 (249)
Q Consensus 10 ~Ig~v~Q~~~l~-----~~lTv~enl--~~~------~~~~~-~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQ 73 (249)
.+||++|.|.+. +.+|+ ||+ .|. +++++ ....+...+++++++.++|+. .+++++.|||.++|
T Consensus 216 ~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R 294 (302)
T 2yv5_A 216 KGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEE 294 (302)
T ss_dssp TTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTT
T ss_pred CCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 589999998653 67899 888 443 12333 223344567889999999974 47788999998889
Q ss_pred HHHHHH
Q psy4634 74 RVSIAV 79 (249)
Q Consensus 74 Rv~iAr 79 (249)
++.|||
T Consensus 295 ~~~~~~ 300 (302)
T 2yv5_A 295 IKELCR 300 (302)
T ss_dssp HHHHSS
T ss_pred HHHHhc
Confidence 999886
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.70 E-value=0.0075 Score=53.40 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4634 46 AKMKELQEVLDLPPDHRTCSTLSGGQVRRV---SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM 112 (249)
Q Consensus 46 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv---~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l 112 (249)
+.+..+.+..+++. +.+.|+|+.|++ ++++++..+|+++|+|||.. ......+++.++++
T Consensus 149 eqL~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 149 EQLKIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 34455667777753 346789999999 99999999999999999974 33445555555554
No 147
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.019 Score=51.39 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=51.8
Q ss_pred CCCcCcCChHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe--cChh
Q psy4634 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT--HYIE 127 (249)
Q Consensus 61 ~~~~~~LSgGqkQRv~iArAL~~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~Tiiivt--H~l~ 127 (249)
+.+..++|+|++|++. +.+...++-++++| +|.+++|......+.+.+.+... ++.++++. ||+.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 4556789999998876 55556777889999 99999999998888887777543 67888888 8874
No 148
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.34 E-value=0.014 Score=52.50 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-C
Q psy4634 39 ISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-N-G 116 (249)
Q Consensus 39 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~-g 116 (249)
++.++...++......+++... .-+.||.++++|+..|...+.++++++.|+|...+ ..+...++++++ . |
T Consensus 84 ms~~ql~~Rlls~~~~v~~~~l--~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg 156 (338)
T 4a1f_A 84 MSAEQLALRALSDLTSINMHDL--ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKE 156 (338)
T ss_dssp SCHHHHHHHHHHHHHCCCHHHH--HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHhhCCCHHHH--hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCC
Confidence 3455555554333332332221 12579999999999999999999999999986543 356666666654 3 6
Q ss_pred cEEEEEec
Q psy4634 117 QTIIITTH 124 (249)
Q Consensus 117 ~TiiivtH 124 (249)
..+|++-|
T Consensus 157 ~~lIVIDy 164 (338)
T 4a1f_A 157 LGIAFIDY 164 (338)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEec
Confidence 78888764
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.24 E-value=0.063 Score=46.92 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=49.0
Q ss_pred HHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy4634 50 ELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEP-TSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122 (249)
Q Consensus 50 ~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEP-tsgLD~~~~~~i~~~L~~l~~~g~Tiiiv 122 (249)
.+.+..+++..... ...+..+.+|.+++++...+++++|+||| ++++|......+.++.+.+. ...+++++
T Consensus 147 ~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~-~~~~~lv~ 218 (295)
T 1ls1_A 147 LLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG-PDEVLLVL 218 (295)
T ss_dssp HHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC-CSEEEEEE
T ss_pred HhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC-CCEEEEEE
Confidence 44556676531000 01234456789999998899999999999 99999998888888877753 33444444
No 150
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.75 E-value=0.015 Score=52.27 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=22.7
Q ss_pred CcCChHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy4634 65 STLSGGQVRRVSIAVTL---LH--TPSLVILDEPT 94 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL---~~--~P~iLlLDEPt 94 (249)
..+|+|++||.+++++| .. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 76 89999999997
No 151
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.57 E-value=1.9e-05 Score=75.08 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=46.6
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EecChhHHhc-cC
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII--TTHYIEEARQ-AN 133 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiii--vtH~l~~~~~-~D 133 (249)
..+|+||+||.++|. + | ++||||..++.+++.|.++.++|.|+++ +||+++++.. |+
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 467999999987651 1 7 9999999988888888888767899985 9999999864 64
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.31 E-value=0.0003 Score=58.02 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=43.8
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeC
Q psy4634 77 IAV-TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140 (249)
Q Consensus 77 iAr-AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~ 140 (249)
.|+ +++.+|++++|||+|+++|..+.+.+.+.|.+..++ +..+| +. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGG--ST-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhh--cc-CCceEEEECCC
Confidence 455 778888888999999999999999999999886543 24456 22 55999887754
No 153
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.21 E-value=0.0089 Score=56.53 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=60.8
Q ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHh-cCCC-
Q psy4634 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLL-HTPS- 86 (249)
Q Consensus 9 ~~Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~-~~P~- 86 (249)
++|+|++|+..+++.+|+++|+.++.. .+.. . -+++..|..+. . ..|-.-.+|++.+++++. ..|+
T Consensus 347 ~~I~vV~Q~~~~~p~~tV~e~l~~a~~-~~~D------v--VLIDTaGrl~~--~-~~lm~EL~kiv~iar~l~~~~P~e 414 (503)
T 2yhs_A 347 NNIPVIAQHTGADSASVIFDAIQAAKA-RNID------V--LIADTAGRLQN--K-SHLMEELKKIVRVMKKLDVEAPHE 414 (503)
T ss_dssp HTCCEECCSTTCCHHHHHHHHHHHHHH-TTCS------E--EEECCCCSCCC--H-HHHHHHHHHHHHHHHTTCTTCSSE
T ss_pred cCceEEecccCcCHHHHHHHHHHHHHh-cCCC------E--EEEeCCCccch--h-hhHHHHHHHHHHHHHHhccCCCCe
Confidence 468999999888888899999988643 1211 0 01222222211 1 112223358888998774 4574
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEE 128 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~ 128 (249)
+||...|++|.|.. +.++.+.+ -|.|.+++|| ++.
T Consensus 415 vLLvLDattGq~al------~~ak~f~~~~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 415 VMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK-LDG 450 (503)
T ss_dssp EEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC-GGG
T ss_pred eEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc-CCC
Confidence 55555588886654 33444443 3899999999 544
No 154
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.13 E-value=0.0076 Score=54.36 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhccCEEEEEeCCE
Q psy4634 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGV 142 (249)
Q Consensus 68 SgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~~Dri~vl~~G~ 142 (249)
+++..+|..|+.++..+|+.+++|||.. ....+.|+.+.....|++.++|..+....+||+..+..|.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 3566789999999999999999999986 3466677776543457899999977445599999998764
No 155
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.68 E-value=5.1e-05 Score=65.86 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=46.3
Q ss_pred cCChHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH---------HHHHHHHHHHHhCCcEEEEEecChh
Q psy4634 66 TLSGGQVRRVSIAVTLLHTPSL--VILDEPTSGLDPMLA---------HYFWQYLQRMSSNGQTIIITTHYIE 127 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~~P~i--LlLDEPtsgLD~~~~---------~~i~~~L~~l~~~g~TiiivtH~l~ 127 (249)
.+|+| ||+++++++..+|++ +|+||+|+.+|...+ ....+.++. ..+|+|.+.+.|++.
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL-YKQGLITLEDAMEAS 241 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHH-HHTTSSCHHHHHHHC
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH-HHcCCCCHHHHHHHh
Confidence 46888 899999999999999 999999999998742 234555555 457888877777653
No 156
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.88 E-value=0.14 Score=47.20 Aligned_cols=44 Identities=9% Similarity=0.255 Sum_probs=37.1
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 83 HTPSLVILDEPTSGLDP-MLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~-~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999876654 678889999998877799999999984
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.57 E-value=0.058 Score=43.26 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4634 73 RRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR 111 (249)
Q Consensus 73 QRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 111 (249)
+...+|++++.+|+++++| ||++|+.+..++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999998876
No 158
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.24 E-value=0.026 Score=50.33 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=44.9
Q ss_pred cCCCCCCC-CcCcCChHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4634 55 LDLPPDHR-TCSTLSGGQVRRVSIAVTLLH------TPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114 (249)
Q Consensus 55 ~~l~~~~~-~~~~LSgGqkQRv~iArAL~~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~ 114 (249)
+.+.+.|. ...++|+|++|++..|++++. +|+++. +|++|+.....+++.|.++..
T Consensus 198 vvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 198 IAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 33433342 335789999999999999988 688876 999999999999999988654
No 159
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.11 E-value=0.12 Score=45.44 Aligned_cols=54 Identities=13% Similarity=0.347 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcE--EEEEecC
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQT--IIITTHY 125 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~T--iiivtH~ 125 (249)
||.++++|+..|...+.++++++.|+|... ...+.+.++++.++ |.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 999999999999999999999999998643 34466667776554 777 8888763
No 160
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.99 E-value=0.00011 Score=67.02 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=46.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 66 TLSGGQVRRVSIAVTLLHTPSL--VILDEPTSGLDPM----L-----AHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~~~P~i--LlLDEPtsgLD~~----~-----~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.+|+| ||+++++++..+|++ +|+||+|+.||.. + +....+.+.. ..+|+|.+.+.|++..
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~-~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL-YKQGLITLEDAMEASP 353 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHT-TTTSSSCTTTTTSSCS
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH-HHCCCCCHHHHHHHcC
Confidence 35888 899999999999999 9999999999965 2 1224444444 5679999998888763
No 161
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=91.91 E-value=0.0011 Score=62.58 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=53.2
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHH--hc-cCEEEEEeCCEEEEe-cChhHHH
Q psy4634 79 VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEA--RQ-ANVVGLMRKGVLLAE-KSPEELI 153 (249)
Q Consensus 79 rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~--~~-~Dri~vl~~G~iv~~-g~~~el~ 153 (249)
|||.-| ++||+ ||++.+|| .+..++. ++.+. ++++.++||+++++ .. ++++..+..+.++.. ++++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~ 101 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA 101 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence 899999 99999 99999999 4544443 34444 77899999999987 34 889888877777754 4777754
No 162
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.28 E-value=0.0006 Score=63.12 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=45.5
Q ss_pred eCCCCC--CCC----CCHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcC
Q psy4634 15 PQETAL--FDE----FTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHT 84 (249)
Q Consensus 15 ~Q~~~l--~~~----lTv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~ 84 (249)
.|+|.. +.. .|+.+++.+...-+ .+......+.+. .+..++++.. ..+.+|||||+|| |||+|+.+
T Consensus 234 rq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~-rL~~lgl~~~-~~~~~LSgg~~QR--LaraL~~~ 309 (418)
T 1p9r_A 234 RQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVT-RLRDMGIEPF-LISSSLLGVLAQR--LVRTLCPD 309 (418)
T ss_dssp GGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHH-HHHHHTCCHH-HHHHHEEEEEEEE--EEEEECTT
T ss_pred ccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHH-HHHHcCCcHH-HHHHHHHHHHHHH--hhhhhcCC
Confidence 388865 233 58999988754211 011111122232 3566777642 2568999999999 99999999
Q ss_pred CCEEE
Q psy4634 85 PSLVI 89 (249)
Q Consensus 85 P~iLl 89 (249)
|++..
T Consensus 310 p~~~~ 314 (418)
T 1p9r_A 310 CKEPY 314 (418)
T ss_dssp TCEEE
T ss_pred CCccC
Confidence 99876
No 163
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=90.11 E-value=0.22 Score=41.26 Aligned_cols=70 Identities=23% Similarity=0.159 Sum_probs=49.9
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH-H-hccCEEEEEeCCE
Q psy4634 72 VRRVSIAVTLL--HTPSLVILDEPTS--GLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-A-RQANVVGLMRKGV 142 (249)
Q Consensus 72 kQRv~iArAL~--~~P~iLlLDEPts--gLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~-~-~~~Dri~vl~~G~ 142 (249)
+....-|+..+ .+.+++||||.+. .++.....++.++|.+ +.+...||++++.... + +.||-|-=|+.-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 44555566666 5689999999976 3444555678888876 4457899999998854 4 4599998886643
No 164
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.74 E-value=0.041 Score=44.65 Aligned_cols=81 Identities=10% Similarity=0.112 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 49 KELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 49 ~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.++.+.+|.... .|.|+.+|..+++.+..+|+.+..+ .+.++|..++.+.+.+.+. .+.++|+.+|.+.+
T Consensus 48 ~~i~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e 117 (206)
T 1jjv_A 48 SKIVEHFGAQIL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIE 117 (206)
T ss_dssp HHHHHHHCTTCC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTT
T ss_pred HHHHHHhCHHHh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhh
Confidence 344555554321 3678999999999988888654333 4466777777776666542 35689999999877
Q ss_pred H--hc-cCEEEEEe
Q psy4634 129 A--RQ-ANVVGLMR 139 (249)
Q Consensus 129 ~--~~-~Dri~vl~ 139 (249)
. .. ||.+++++
T Consensus 118 ~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 118 NKLTALCDRILVVD 131 (206)
T ss_dssp TTCGGGCSEEEEEE
T ss_pred cCcHhhCCEEEEEE
Confidence 5 44 99988874
No 165
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.17 E-value=0.39 Score=42.14 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CcEEEEEecChh
Q psy4634 72 VRRVSIAVTLL---HTPSLVILDEPTSGLDP--------ML----AHYFWQYLQRMSSN-GQTIIITTHYIE 127 (249)
Q Consensus 72 kQRv~iArAL~---~~P~iLlLDEPtsgLD~--------~~----~~~i~~~L~~l~~~-g~TiiivtH~l~ 127 (249)
.+.+..++.++ .+|+++++|+.++-... .. ..++...|++++++ |.+||+++|...
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 35677777777 67999999999876532 12 23444555555554 899999988654
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=89.02 E-value=0.0017 Score=53.48 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=45.0
Q ss_pred CcCChHHHHHHHHH-HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH-Hhc-cCEEEEEeCC
Q psy4634 65 STLSGGQVRRVSIA-VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-ARQ-ANVVGLMRKG 141 (249)
Q Consensus 65 ~~LSgGqkQRv~iA-rAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~-~~~-~Dri~vl~~G 141 (249)
..+|+||+||+++| ++++.++.++++|||. +..+ .+.--+++++++..+. ++. +.|. ++.|
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~-----------~~~l---~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g 173 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG-----------WRDL---TAIWDVSIRLEVPMADLEARLVQRW--LDHG 173 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTT-----------GGGG---GGTCSEEEEECCCHHHHHHHHHHHH--HHTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCch-----------hHHH---HHhcCEEEEEeCCHHHHHHHHHHHH--HhcC
Confidence 35799999999998 8888888888888873 1112 2222367888888876 333 5552 3444
Q ss_pred EEEEecChhHHHH
Q psy4634 142 VLLAEKSPEELIA 154 (249)
Q Consensus 142 ~iv~~g~~~el~~ 154 (249)
. +.+++..
T Consensus 174 ~-----t~~~~~~ 181 (208)
T 3c8u_A 174 L-----NHDAAVA 181 (208)
T ss_dssp C-----CHHHHHH
T ss_pred C-----CHHHHHH
Confidence 3 5666554
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.86 E-value=0.75 Score=39.13 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCcEEEEEecChhHH----
Q psy4634 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----------LAHYFWQYLQRMSS----NGQTIIITTHYIEEA---- 129 (249)
Q Consensus 68 SgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~----------~~~~i~~~L~~l~~----~g~TiiivtH~l~~~---- 129 (249)
+++++.|..+..+...+|.+|++||+.+.++.. ....+...+..... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 567888888999999999999999997765532 22334444444321 235677788876432
Q ss_pred h-ccCEEEEE
Q psy4634 130 R-QANVVGLM 138 (249)
Q Consensus 130 ~-~~Dri~vl 138 (249)
. .+++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 2 36666554
No 168
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.74 E-value=0.72 Score=40.42 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=37.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEecChhHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS---NGQTIIITTHYIEEA 129 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~---~g~TiiivtH~l~~~ 129 (249)
.+|.++++||+... |+.....+.+++.++.. .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 46889999999876 88888888888876655 578999999988543
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.27 E-value=0.25 Score=39.46 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4634 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM 112 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l 112 (249)
...|++++.+|+++++| ||++|+.+..++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999999888764
No 170
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=87.61 E-value=0.22 Score=42.17 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=38.2
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCC
Q psy4634 37 YRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPS 86 (249)
Q Consensus 37 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~ 86 (249)
.+++.....++++++-+.+|.+..+|..+.||||..|+...+++|+..|+
T Consensus 44 l~~s~~~~s~~i~~le~~lg~~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 44 AGISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HTCCHHHHHHHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhCCCeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 35666677788889888999976788889999999999999999999887
No 171
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=86.19 E-value=0.0075 Score=52.26 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTS------------GLDPMLAHYFWQYL 109 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPts------------gLD~~~~~~i~~~L 109 (249)
+.+.+|||||+||+.+++|+.++|++| |||+. --|...+..+++.+
T Consensus 133 ~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 133 QLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 345789999999999999999999975 99864 33667777766654
No 172
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.00 E-value=7.1 Score=34.88 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=44.6
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H---------------HHHHHHHHHHHHHHhC-CcEEEEEecCh-------
Q psy4634 73 RRVSIAVTLL--HTPSLVILDEPTSGLD-P---------------MLAHYFWQYLQRMSSN-GQTIIITTHYI------- 126 (249)
Q Consensus 73 QRv~iArAL~--~~P~iLlLDEPtsgLD-~---------------~~~~~i~~~L~~l~~~-g~TiiivtH~l------- 126 (249)
+-+.+++.++ .+|+++++|+-++-.. . ....+++..|..++++ |.|||++.|-.
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 4456667665 5799999998665543 1 1122344555666655 99999999872
Q ss_pred --------hH-Hhc-cCEEEEEeCC
Q psy4634 127 --------EE-ARQ-ANVVGLMRKG 141 (249)
Q Consensus 127 --------~~-~~~-~Dri~vl~~G 141 (249)
.. +.. +|.++.++.+
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred CCcccCCCcchhhhhCcEEEEEEec
Confidence 11 345 8888888753
No 173
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.28 E-value=4.1 Score=36.34 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=44.5
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---Hh-CCcEEEEEecChhH-----
Q psy4634 73 RRVSIAVTLL--HTPSLVILDEPTSGLDPM-------------LAHYFWQYLQRM---SS-NGQTIIITTHYIEE----- 128 (249)
Q Consensus 73 QRv~iArAL~--~~P~iLlLDEPtsgLD~~-------------~~~~i~~~L~~l---~~-~g~TiiivtH~l~~----- 128 (249)
|-..+++.++ .+|+++++|++++-.... ..+.+.+.+++| .+ .|.|||+++|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666664 689999999998866311 112344555554 33 49999999986432
Q ss_pred -----------Hhc-cCEEEEEeCCEEEE
Q psy4634 129 -----------ARQ-ANVVGLMRKGVLLA 145 (249)
Q Consensus 129 -----------~~~-~Dri~vl~~G~iv~ 145 (249)
+.. ||-++.++..+...
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~k 236 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAVK 236 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeeec
Confidence 233 77777777665443
No 174
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=85.22 E-value=0.61 Score=41.89 Aligned_cols=64 Identities=9% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCCCC-----CCCcCcCChHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy4634 47 KMKELQEVLDLPPD-----HRTCSTLSGGQVRRVSIA----VTL-LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114 (249)
Q Consensus 47 ~~~~~l~~~~l~~~-----~~~~~~LSgGqkQRv~iA----rAL-~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~ 114 (249)
.+.++++.+++... ..++..+|+|++||+.++ +++ ..+|++ +|+|++|......+++.|.++..
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 34566777665432 345677898998988877 665 444554 79999999999999999988643
No 175
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.68 E-value=0.87 Score=38.49 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 77 IAVTLLHTPSLVILDEPTSG-LDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsg-LD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
+..++..+|+++++||+-.- .+.......++.+..+...|..++.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 34445578999999998642 3322223344444555567889999998
No 176
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=82.99 E-value=1.2 Score=39.39 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=36.5
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHHhC-CcEEEEEecChh
Q psy4634 73 RRVSIAVTLL----HTPSLVILDEPTSGLDPM--------L----AHYFWQYLQRMSSN-GQTIIITTHYIE 127 (249)
Q Consensus 73 QRv~iArAL~----~~P~iLlLDEPtsgLD~~--------~----~~~i~~~L~~l~~~-g~TiiivtH~l~ 127 (249)
+.+..++.++ .+++++++|+.++-.... . ...+...|++++++ |.+||+++|...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 4455556666 679999999999866442 1 23455556666555 899999999654
No 177
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.01 E-value=2.6 Score=36.28 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=33.5
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTS-GLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
..+|++|++||+-. ..+...+..+...+..+.+.|..+|++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 35799999999855 345578888999998877777777777663
No 178
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=81.66 E-value=0.015 Score=50.88 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=41.0
Q ss_pred cEEEEeCCCC----------------CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-C-CCCCcCcCCh
Q psy4634 10 YIGFMPQETA----------------LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-P-DHRTCSTLSG 69 (249)
Q Consensus 10 ~Ig~v~Q~~~----------------l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSg 69 (249)
.+||++|.|. +|+++|+ +|+.|.... . ..+...++.++++.++|+ . .++++++||.
T Consensus 221 ~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~-~--~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 221 FGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCN-H--VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp TSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCC-S--SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCc-C--CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5899999985 5788899 998875321 1 223356788999999996 4 4777788885
No 179
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=81.23 E-value=0.84 Score=43.85 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=47.5
Q ss_pred cCcCChH-HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q psy4634 64 CSTLSGG-QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTH 124 (249)
Q Consensus 64 ~~~LSgG-qkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH 124 (249)
.+.|+.+ ++|...+++.++.+|..++++.+++.+|..+ ....++++++... +.||+++||
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~-~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT-TEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT-CHHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc-HHHHHHHHHHhhcCCceEEEecc
Confidence 5666554 4588889999999999999999999999884 4577788887555 578888888
No 180
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.31 E-value=6.8 Score=35.68 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=37.0
Q ss_pred cCChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CcEEEEEec
Q psy4634 66 TLSGGQVRRVSIAVTLL--HTPSLVILDEPTSGLDP----------MLAHYFWQYLQRMSSN-GQTIIITTH 124 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~--~~P~iLlLDEPtsgLD~----------~~~~~i~~~L~~l~~~-g~TiiivtH 124 (249)
.+|..+. .+.++.+. ++|+++++|..+.-.+. .....+.+.|+.++++ |.+||+++|
T Consensus 292 ~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 292 DLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp TCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred CCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 4454443 33445554 58999999988654332 1224566667777766 999999998
No 181
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=79.38 E-value=0.052 Score=48.04 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=42.0
Q ss_pred EEEEeCCCCCCC----CCCHHHHHH-HHHHh---------cC-CCHHHHHHHHHHHHHHcCCCC-CCCCcCcCChHHHHH
Q psy4634 11 IGFMPQETALFD----EFTIAETFQ-FYASL---------YR-ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRR 74 (249)
Q Consensus 11 Ig~v~Q~~~l~~----~lTv~enl~-~~~~~---------~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQR 74 (249)
+||++|.|.+.. .+|+ |++. ++..+ ++ ....+...+++++++.+++.. ..+.+.+|+.|++||
T Consensus 225 ~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 225 GGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp TEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred CEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 799999997755 6789 8883 12211 12 122233456888999999975 455567788888874
No 182
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.33 E-value=2.2 Score=38.06 Aligned_cols=58 Identities=10% Similarity=0.210 Sum_probs=46.5
Q ss_pred cCCCEEEEeCCCCCC---CHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh-------------ccCEEEEEeC
Q psy4634 83 HTPSLVILDEPTSGL---DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR-------------QANVVGLMRK 140 (249)
Q Consensus 83 ~~P~iLlLDEPtsgL---D~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~-------------~~Dri~vl~~ 140 (249)
..|.++++||.=.-+ +|.....+.+++++.++.|..++++||.++.+. .|+..+++..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 368999999998777 477888899999998777999999999997542 3666666654
No 183
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=78.11 E-value=2.8 Score=34.94 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh----------hHH-hccCEEEEEe
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI----------EEA-RQANVVGLMR 139 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l----------~~~-~~~Dri~vl~ 139 (249)
+|+++++||.-. |++. ..+.++.+++.|.+||++-|+. ..+ ..||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6543 4455666666799999999932 233 3489988764
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=77.29 E-value=0.98 Score=36.03 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=26.7
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCcEEEEE-ecChhHHh
Q psy4634 82 LHTPSLVILDEPTS-GLDPMLAHYFW-QYLQRMSSNGQTIIIT-THYIEEAR 130 (249)
Q Consensus 82 ~~~P~iLlLDEPts-gLD~~~~~~i~-~~L~~l~~~g~Tiiiv-tH~l~~~~ 130 (249)
+.++++|+|||+-. .+++..+..++ .++.....++..+|++ .+.++++.
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~ 164 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLA 164 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH
Confidence 35688999999932 34444444344 4665543444555555 44556553
No 185
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.52 E-value=0.48 Score=45.34 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=40.6
Q ss_pred cCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4634 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR 111 (249)
Q Consensus 64 ~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 111 (249)
.+.+|+|++|++..++....++.+|+|||... |++.....+.+.|.+
T Consensus 181 ~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 36799999999999999999999999999988 899999999998875
No 186
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.63 E-value=1.4 Score=38.31 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=26.5
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 84 TPSLVILDEPTSGLD---PMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.|.++++||+....+ ......+.+.+..+...+.++|++||+.+.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 488999999977553 222223333332222236789999998864
No 187
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=74.48 E-value=1.9 Score=34.67 Aligned_cols=44 Identities=14% Similarity=0.309 Sum_probs=30.5
Q ss_pred hcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcE-EEEEecC
Q psy4634 82 LHTPSLVILDEPTSG-LDPMLAHYFWQYLQRMSSNGQT-IIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsg-LD~~~~~~i~~~L~~l~~~g~T-iiivtH~ 125 (249)
..+|.++++||.-.- -+......+.+.+....+.+.. +|++++.
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 367999999996442 2233377788888887665654 7777774
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=73.96 E-value=2.2 Score=37.62 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=42.3
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEec
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNG-QTIIITTH 124 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~TiiivtH 124 (249)
++.++.++|+..++++.+.+|+++||.-..+..|... ....++++++...| .|+++.|.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 4567889999999999999999888874334445433 45566777765555 57776665
No 189
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=72.14 E-value=7.9 Score=32.68 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=38.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC---------h-hHH-hccCEEEEEe
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY---------I-EEA-RQANVVGLMR 139 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~---------l-~~~-~~~Dri~vl~ 139 (249)
+.+.+++++||.--..| +.++++.+.+.|+.||++.++ - ..+ ..||.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 37889999999977654 556666666679999999999 2 233 4589887664
No 190
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=71.86 E-value=3.2 Score=32.90 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=32.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 578999999755 7888777777766542 2367888889887654
No 191
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=67.93 E-value=15 Score=27.07 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=39.5
Q ss_pred hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 82 LHTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 82 ~~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
..+|+.++|| ...+.+|......+.++.+++++.|.++.++.-.-
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 91 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANS 91 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4678999999 88999999999999999999988899988876544
No 192
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.03 E-value=6.8 Score=33.61 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+++++++|| ...+++.....+.+.+.+.. ....+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchhhC
Confidence 556999999 78899998888888888753 344566777766543
No 193
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=64.34 E-value=2.7 Score=36.56 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=26.1
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCcEEEEEec-ChhHHh
Q psy4634 82 LHTPSLVILDEPT-SGLDPMLAHYFWQ-YLQRMSSNGQTIIITTH-YIEEAR 130 (249)
Q Consensus 82 ~~~P~iLlLDEPt-sgLD~~~~~~i~~-~L~~l~~~g~TiiivtH-~l~~~~ 130 (249)
+.++++|++||.- ..+++..+..++. ++.....+++.+|++|+ .++++.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~ 263 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLE 263 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHH
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 4578999999982 3455555554444 66553333455666665 455553
No 194
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=63.70 E-value=21 Score=31.83 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=34.9
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---HhC-CcEEEEEecCh
Q psy4634 73 RRVSIAVTLL--HTPSLVILDEPTSGLD---P----------MLAHYFWQYLQRM---SSN-GQTIIITTHYI 126 (249)
Q Consensus 73 QRv~iArAL~--~~P~iLlLDEPtsgLD---~----------~~~~~i~~~L~~l---~~~-g~TiiivtH~l 126 (249)
+-+.+++.++ .+++++++|..++=.- . ...+.+.+.+++| +++ +.+||+++|--
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 4456667776 5799999999876441 0 1223455666665 344 89999998854
No 195
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=63.30 E-value=3 Score=36.06 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEecChhHH
Q psy4634 67 LSGGQVRRVSIAVTLL--HTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSN-GQ--TIIITTHYIEEA 129 (249)
Q Consensus 67 LSgGqkQRv~iArAL~--~~P~iLlLDEPtsgLD~~~-~~~i~~~L~~l~~~-g~--TiiivtH~l~~~ 129 (249)
+|+|++ .+++.+. ..|.++++ +.+|... +..+.+.+.++.+. |. ++.+|+|+-+.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 898886 5566666 78999998 8999887 67788888888764 53 667777776544
No 196
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=63.00 E-value=28 Score=31.47 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=44.3
Q ss_pred HcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEec
Q psy4634 54 VLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTH 124 (249)
Q Consensus 54 ~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH 124 (249)
..+++..+-.-+.||..+.+|+.-|...+.+.++.+.|+|. +++ .++...++++.+ .|..+|++-+
T Consensus 252 ~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 252 EARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTL---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBH---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCH---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 34554322123579999999999988888888999988764 333 344555666653 4777777755
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=60.45 E-value=6.3 Score=33.98 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=31.3
Q ss_pred HHHHHHHh---cCCCEEEEeCCCCCCC--------HHHH----HHHHHHHHHHHh-CCcEEEEEecC
Q psy4634 75 VSIAVTLL---HTPSLVILDEPTSGLD--------PMLA----HYFWQYLQRMSS-NGQTIIITTHY 125 (249)
Q Consensus 75 v~iArAL~---~~P~iLlLDEPtsgLD--------~~~~----~~i~~~L~~l~~-~g~TiiivtH~ 125 (249)
+..++.++ .+|+++++|.-++-.. ...+ .++...|+++++ .|.+||++.|-
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 44455555 4689999998775321 2222 334445555554 48999998884
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=59.72 E-value=9.7 Score=34.98 Aligned_cols=52 Identities=10% Similarity=0.238 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 74 RVSIAVTLLHTPSLVILDEPT-SG--LDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPt-sg--LD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
+-+++.+..++++++|+|+|- .+ .|+....++.++.+.+......+++.+|.
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 345666667799999999996 45 88888888877766654334445555554
No 199
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=58.25 E-value=17 Score=29.21 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=36.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh----------hHH-hccCEEEEEe
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI----------EEA-RQANVVGLMR 139 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l----------~~~-~~~Dri~vl~ 139 (249)
.+.+++++||.-- +|+.. .+.++++...|++||++.++. ..+ ..||.|.=|+
T Consensus 80 ~~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 66543 456777766799999999865 233 3488886654
No 200
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=58.21 E-value=18 Score=31.70 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHHh------CCcEEEEEecChhHH
Q psy4634 72 VRRVSIAVTLLHTPSLVILDEP-------TSGLDPMLAHYFWQYLQRMSS------NGQTIIITTHYIEEA 129 (249)
Q Consensus 72 kQRv~iArAL~~~P~iLlLDEP-------tsgLD~~~~~~i~~~L~~l~~------~g~TiiivtH~l~~~ 129 (249)
..+-.+..+-..+|.+|++||. ..+.+........+++..+.. .+..+|.+|+..+.+
T Consensus 164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234 (357)
T ss_dssp HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGB
T ss_pred HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhC
Confidence 3444556666678999999998 334444444444444444421 244567788876443
No 201
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=56.90 E-value=21 Score=26.49 Aligned_cols=44 Identities=18% Similarity=0.398 Sum_probs=38.3
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 83 HTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+|+.++|| ...+.+|......+.++.+++.+.|.++.++.-.-
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 94 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSD 94 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 578999999 88999999999999999999988888888876443
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=56.56 E-value=10 Score=31.58 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-CCcEEEEEecChhHH
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTS----------GLDPMLAHYFWQYLQRMS---S-NGQTIIITTHYIEEA 129 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~---~-~g~TiiivtH~l~~~ 129 (249)
+-.+..+...+|.+|++||.-. +-+......+.+++..+. . .+..+|.+|+..+.+
T Consensus 100 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3345556667899999999733 236666777777777753 2 256788888877654
No 203
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=55.93 E-value=13 Score=26.27 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=37.4
Q ss_pred hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy4634 82 LHTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123 (249)
Q Consensus 82 ~~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~Tiiivt 123 (249)
..+|+.+++| .....+|......+.++.+++++.|.++.++.
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~ 83 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVG 83 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 3578999999 88999999999999999999988898888875
No 204
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=55.89 E-value=32 Score=25.54 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=37.9
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 83 HTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+++.++|| ...+.+|......+.++.+++.+.|.++.++.-.-
T Consensus 62 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~ 106 (143)
T 3llo_A 62 ENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSA 106 (143)
T ss_dssp -CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCH
T ss_pred CCceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999 88999999999999999999988898888876543
No 205
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=54.43 E-value=11 Score=30.03 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=35.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChh------H----H-hccCEEEEEe
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE------E----A-RQANVVGLMR 139 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~------~----~-~~~Dri~vl~ 139 (249)
.+++++++||.-. +++ .+.+.++.+.++|..|+++.++.+ . + ..||.|.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999743 543 355667777777999999988554 1 1 2388876553
No 206
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=53.57 E-value=17 Score=28.13 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=31.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.++.++++||. ..+++.....+.+.+.+. ..+..+|++|+..+.
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhh
Confidence 57889999995 557777777777777663 335667777776654
No 207
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=53.48 E-value=19 Score=30.62 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHh-CCcEEEEEecChhHH
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTS-------------GLDPMLAHYFWQYLQRMSS-NGQTIIITTHYIEEA 129 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPts-------------gLD~~~~~~i~~~L~~l~~-~g~TiiivtH~l~~~ 129 (249)
+-.+..|....|.++++||.-+ +........++..+..+.. .+..||.+|+..+.+
T Consensus 98 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3445566667899999999642 2223334455555554332 367788899987654
No 208
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=53.08 E-value=22 Score=34.26 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 80 AL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.-..++-++++| |+.|+++.++.. ++.+.+.|.+++++.|.++.
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~~----~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTERA----WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHHH----HHHHHHTTCCEEEEEECGGG
T ss_pred HhhcCcEEEEEc-CCcccchhHHHH----HHHHHHccCCEEEEecCCch
Confidence 345688899999 999999887733 33333457889999998875
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=51.62 E-value=39 Score=28.99 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=31.4
Q ss_pred HHHHHHh--cCCC--EEEEeCCCCC------CCH-HHHHHHHHHHHHHHhC-CcEEEEEecC
Q psy4634 76 SIAVTLL--HTPS--LVILDEPTSG------LDP-MLAHYFWQYLQRMSSN-GQTIIITTHY 125 (249)
Q Consensus 76 ~iArAL~--~~P~--iLlLDEPtsg------LD~-~~~~~i~~~L~~l~~~-g~TiiivtH~ 125 (249)
+.++.+. ++++ ++++|--+.- -+. .....+...|+.++++ |.+|++++|-
T Consensus 169 ~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 169 SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 230 (315)
T ss_dssp HHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 3344454 3688 9999954321 111 2334566667777766 9999999994
No 210
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=50.71 E-value=26 Score=31.08 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=44.5
Q ss_pred HHHcCCCCCCCCcCcCChHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-------H--------HHHHHHHHHHHHH
Q psy4634 52 QEVLDLPPDHRTCSTLSGGQVRRVSIAVTL--L--HTPSLVILDEPTSGLD-------P--------MLAHYFWQYLQRM 112 (249)
Q Consensus 52 l~~~~l~~~~~~~~~LSgGqkQRv~iArAL--~--~~P~iLlLDEPtsgLD-------~--------~~~~~i~~~L~~l 112 (249)
++.+|++..+-.+.+=.-++++.+.++.++ + .+|+++++|--++=.- + ...+.+-+.|++|
T Consensus 75 a~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL 154 (333)
T 3io5_A 75 LRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIV 154 (333)
T ss_dssp HHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHH
T ss_pred HHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHH
Confidence 456676532222223335677767777777 4 4799999997765431 0 1223444445443
Q ss_pred ----HhCCcEEEEEecChh
Q psy4634 113 ----SSNGQTIIITTHYIE 127 (249)
Q Consensus 113 ----~~~g~TiiivtH~l~ 127 (249)
.+.|.++|++-|-..
T Consensus 155 ~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 155 TPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHhCCEEEEECCeee
Confidence 345999999999765
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=50.65 E-value=31 Score=25.66 Aligned_cols=40 Identities=3% Similarity=0.003 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
+..++++||. ..+++..+..+.+.+.+....+..+|.+|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 4689999996 467888888888888774333455666554
No 212
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=50.52 E-value=0.12 Score=44.10 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.6
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCC
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEP 93 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEP 93 (249)
.+|||||+||+.+++|+.++|++ ||++
T Consensus 168 ~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 168 VEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 46899999999999999999987 6755
No 213
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=50.49 E-value=19 Score=26.25 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=38.0
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 83 HTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+|+.++|| ...+.+|......+.++.+++.+ |.++.++.-.-
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~ 87 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEF 87 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCH
Confidence 678999999 88999999999999999999988 99988886544
No 214
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=47.56 E-value=66 Score=22.12 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=37.4
Q ss_pred HHHHhcCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 78 AVTLLHTP-SLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 78 ArAL~~~P-~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
..++...+ +.+++| .-.+.+|......+.++.+++.+.|..+.++.-
T Consensus 36 ~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 84 (110)
T 1sbo_A 36 RNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSL 84 (110)
T ss_dssp HTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred HHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 33444444 788999 889999999999999999998888888877643
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=47.21 E-value=52 Score=35.54 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---Hh-CCcEEEEEecChh------
Q psy4634 73 RRVSIAVTLL--HTPSLVILDEPTSGLD-P------------MLAHYFWQYLQRM---SS-NGQTIIITTHYIE------ 127 (249)
Q Consensus 73 QRv~iArAL~--~~P~iLlLDEPtsgLD-~------------~~~~~i~~~L~~l---~~-~g~TiiivtH~l~------ 127 (249)
+-...++.++ .+|+++++|+..+-.. . ...+++.+.+++| ++ .|.+||+++|--.
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444555444 6899999999887552 1 1233455555554 44 4999999999322
Q ss_pred ----------HHhc-cCEEEEEeCCE
Q psy4634 128 ----------EARQ-ANVVGLMRKGV 142 (249)
Q Consensus 128 ----------~~~~-~Dri~vl~~G~ 142 (249)
.++. ||.++.+++++
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 2444 78888886544
No 216
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=46.90 E-value=29 Score=28.68 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh----------hHH-hccCEEEEEe
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI----------EEA-RQANVVGLMR 139 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l----------~~~-~~~Dri~vl~ 139 (249)
+.+++++||.-- +|+.. + +.+++++.+|+.||++-++. ..+ ..||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~~---V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI---V-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTTH---H-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHHH---H-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 66442 3 66777766799999999943 233 3488887664
No 217
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=46.47 E-value=58 Score=23.64 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=37.5
Q ss_pred HHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 80 TLLHTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 80 AL~~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
++..+++.+++| +..+.+|...-..+.++.+++.+.|..+.++.=
T Consensus 47 ~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~ 92 (125)
T 2ka5_A 47 FLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSP 92 (125)
T ss_dssp TTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 344568899999 889999999999999999998777888877753
No 218
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=44.16 E-value=0.12 Score=43.27 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=24.5
Q ss_pred CcCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy4634 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPT 94 (249)
Q Consensus 65 ~~LSgGqkQRv~iArAL~~~P~iLlLDEPt 94 (249)
.+|||||+||+.+++|+.++|++ ||++.
T Consensus 144 ~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 144 VEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp HHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred HHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 46899999999999999999987 68764
No 219
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=43.95 E-value=60 Score=26.11 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHh----CCcEEEEEecChhHH
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSGL-----------DPMLAHYFWQYLQRMSS----NGQTIIITTHYIEEA 129 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsgL-----------D~~~~~~i~~~L~~l~~----~g~TiiivtH~l~~~ 129 (249)
+-.+..+....|.+|++||.-.-. +......+.+++..+.. .+..+|.+|+..+.+
T Consensus 88 ~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 88 RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADIL 158 (262)
T ss_dssp HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGG
T ss_pred HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhc
Confidence 344555666779999999985432 33344455556655432 245677777776544
No 220
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=42.20 E-value=78 Score=21.41 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=24.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
-.+|+++++|-...+.|-. .+.+.+++....-..++++++.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 83 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGL---EVAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHHCTTCCEEEEESCG
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHccCCCCeEEEEECCc
Confidence 3689999999877776642 4455555533223445555553
No 221
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=42.11 E-value=49 Score=30.25 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=33.3
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhC-CcEEEEEecCh
Q psy4634 73 RRVSIAVTLL--HTPSLVILDEPTSGL-------DP-MLAHYFWQYLQRMSSN-GQTIIITTHYI 126 (249)
Q Consensus 73 QRv~iArAL~--~~P~iLlLDEPtsgL-------D~-~~~~~i~~~L~~l~~~-g~TiiivtH~l 126 (249)
+-+..++.++ ++|+++++|=-+. + +. .....+...|++++++ |.+||+++|--
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 3334445544 4799999994332 2 11 2234566677777666 99999998843
No 222
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=41.45 E-value=61 Score=22.14 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
.+|+++++|--..+.|- ..+.+.+++....-..|+++++.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEECTT
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhCCCCeEEEEeCCC
Confidence 58999999987766653 34455555532223345555554
No 223
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=41.16 E-value=0.27 Score=40.60 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=20.7
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-----CcEEEEEecChhHH
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-----GQTIIITTHYIEEA 129 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-----g~TiiivtH~l~~~ 129 (249)
++..|+..++||++.+.|..+...+.+.|.+...+ ...+++++|+++++
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~ 198 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHH
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHH
Confidence 35567777788999999988887777776653221 23555556666555
No 224
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=40.90 E-value=41 Score=27.15 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEEE-ecChhH
Q psy4634 68 SGGQVRRVSIAVTLLHTPSLVILDEPTS-GLDPMLAHYFWQYLQRMSSNGQTIIIT-THYIEE 128 (249)
Q Consensus 68 SgGqkQRv~iArAL~~~P~iLlLDEPts-gLD~~~~~~i~~~L~~l~~~g~Tiiiv-tH~l~~ 128 (249)
+.|+..+.. ...+.+-+++++||.-. ++|........+.+.....+-.++++| |...+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 456665553 33688999999999976 677766644444443333333456665 444433
No 225
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=40.66 E-value=86 Score=21.53 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE-EEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII-ITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tii-ivtH~ 125 (249)
-.+|+++++|--..+.|-. ++.+.+++.. ....+| ++++.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~~~ 85 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDGI---EILKRMKVID-ENIRVIIMTAYG 85 (124)
T ss_dssp HHCCSEEEEESCCTTCCHH---HHHHHHHHHC-TTCEEEEEESSC
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCCEEEEEccC
Confidence 3689999999877776642 3444555532 244444 44443
No 226
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=39.85 E-value=71 Score=22.29 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=23.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
.+|+++|+|-...+.|- ..+.+.+++.. .+..||+.|.
T Consensus 45 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 82 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNG---IQVLETLRKRQ-YSGIIIIVSA 82 (134)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTT-CCSEEEEEEC
T ss_pred cCCCEEEEecCCCCCCh---HHHHHHHHhcC-CCCeEEEEeC
Confidence 68999999988877764 23444455422 2444555444
No 227
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=38.86 E-value=25 Score=30.15 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=30.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.+++++++||. -.|+......+.+.+.+. ..+..+|++|++...
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQK 161 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeCChHh
Confidence 35789999995 457777777777666552 235677888887754
No 228
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=38.61 E-value=28 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=35.9
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 84 TPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 84 ~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
+++.++|| ...+.+|......+.++.+++.+.|..++++.-.
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 89 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVK 89 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCS
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57889999 7888999999999999999988888888887543
No 229
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=37.88 E-value=70 Score=35.17 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhC-CcEEEEEecChhH-----
Q psy4634 73 RRVSIAVTLL--HTPSLVILDEPTSGLD-P------------MLAHYFWQYLQRM---SSN-GQTIIITTHYIEE----- 128 (249)
Q Consensus 73 QRv~iArAL~--~~P~iLlLDEPtsgLD-~------------~~~~~i~~~L~~l---~~~-g~TiiivtH~l~~----- 128 (249)
|-..+++.++ .+|+++++|.-++-.. + ...+.+.+.+++| +++ |.+||+++|--..
T Consensus 448 ~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~ 527 (2050)
T 3cmu_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (2050)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS
T ss_pred HHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccccc
Confidence 3456667664 5799999998876542 1 1223455666665 344 9999999985322
Q ss_pred -----------Hhc-cCEEEEEeCCE
Q psy4634 129 -----------ARQ-ANVVGLMRKGV 142 (249)
Q Consensus 129 -----------~~~-~Dri~vl~~G~ 142 (249)
++. ||.++.++...
T Consensus 528 g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 528 GNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp SCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCCcCCCCcchhhhhCCEEEEEEecc
Confidence 444 88888876654
No 230
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=37.63 E-value=91 Score=21.77 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
..|+++++|--..+.|-. .+.+.|++....-..|+++++.
T Consensus 46 ~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 85 (136)
T 1mvo_A 46 EKPDLIVLDVMLPKLDGI---EVCKQLRQQKLMFPILMLTAKD 85 (136)
T ss_dssp HCCSEEEEESSCSSSCHH---HHHHHHHHTTCCCCEEEEECTT
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHcCCCCCCEEEEECCC
Confidence 589999999887777642 3445555432222344555543
No 231
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=36.83 E-value=47 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=27.3
Q ss_pred HHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy4634 76 SIAVTLLHTP-SLVILDEPTSGLDPMLAHYFWQYLQRM 112 (249)
Q Consensus 76 ~iArAL~~~P-~iLlLDEPtsgLD~~~~~~i~~~L~~l 112 (249)
.+..++...| .++++||. ..+++.....+.+.+.+-
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 3555555555 79999998 678898888888888763
No 232
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=36.51 E-value=80 Score=22.58 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
-..|+++|+|-...+.|- .++.+.|++.. .+..||+.|.
T Consensus 47 ~~~~dlvllD~~lp~~~g---~~l~~~l~~~~-~~~~ii~ls~ 85 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDG---IELVDNILKLY-PDCSVIFMSG 85 (141)
T ss_dssp TSCCSEEEEESCCSSSCH---HHHHHHHHHHC-TTCEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhhC-CCCcEEEEeC
Confidence 357999999987777763 24555555532 3445555544
No 233
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=36.05 E-value=0.19 Score=45.70 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=37.4
Q ss_pred CCcCcCChHHHHHHHHHHHHhcCCCEEE-EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q psy4634 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVI-LDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120 (249)
Q Consensus 62 ~~~~~LSgGqkQRv~iArAL~~~P~iLl-LDEPtsgLD~~~~~~i~~~L~~l~~~g~Tii 120 (249)
.....+++|++||+..+.+++.+|++++ ||+|+. .+++++.++|.|+.
T Consensus 278 ~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 278 MNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp ECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH-----------HHHTTCTTCHHHHH
T ss_pred hhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH-----------HHHHHHHHcCccHH
Confidence 3456789999999999888899999988 999997 34555655665544
No 234
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=34.89 E-value=40 Score=26.74 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=29.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec-ChhHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH-YIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH-~l~~~ 129 (249)
+-..+|.| +|.++.....+.+.++++.....+.|+.|| +.+-+
T Consensus 34 ~~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~ 77 (233)
T 3q6v_A 34 TDGITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRA 77 (233)
T ss_dssp SSCEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHHH
T ss_pred CCeEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhhh
Confidence 34677888 566787778888888886444567777787 44433
No 235
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=34.73 E-value=39 Score=30.79 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcE--EEEEec
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQT--IIITTH 124 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~T--iiivtH 124 (249)
|+..+.+|+.-|...+.+.++++.|+|. +++. .+...++++.+ .|.. +|++-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHhCCCCeEEEEec
Confidence 8888899999888888888999998874 5443 35555566543 3667 777755
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=34.58 E-value=95 Score=27.35 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=29.9
Q ss_pred hHHHHHHH-HHHHHhcCCCEEEEeCCCCCCCHHH--------HHHHHHHHHHH---H-hCCcEEEEEecC
Q psy4634 69 GGQVRRVS-IAVTLLHTPSLVILDEPTSGLDPML--------AHYFWQYLQRM---S-SNGQTIIITTHY 125 (249)
Q Consensus 69 gGqkQRv~-iArAL~~~P~iLlLDEPtsgLD~~~--------~~~i~~~L~~l---~-~~g~TiiivtH~ 125 (249)
.+..+.+. +...+...+ ++++||-.+=-.... .+.+.+.+.+| . +.|.|+|++++.
T Consensus 167 ~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 167 TDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp CCHHHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cCHHHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 34444444 445555444 999999765322111 12334444433 3 348999998873
No 237
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=34.14 E-value=87 Score=21.65 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=23.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
-..|+++++|--..+.|- ..+.+.+++....-..|++++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSG---VELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp GCCSEEEEEECCSTTSCH---HHHHHHHHHTTCCCCEEEEECTT
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHhcCCCCCEEEEECCC
Confidence 457999999987777663 23444555432222344555553
No 238
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=34.03 E-value=1.4e+02 Score=32.32 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=42.8
Q ss_pred HHHHHHh--cCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHH---Hh-CCcEEEEEecChh---------
Q psy4634 76 SIAVTLL--HTPSLVILDEPTSGLDP-------------MLAHYFWQYLQRM---SS-NGQTIIITTHYIE--------- 127 (249)
Q Consensus 76 ~iArAL~--~~P~iLlLDEPtsgLD~-------------~~~~~i~~~L~~l---~~-~g~TiiivtH~l~--------- 127 (249)
.+++.++ .+|+++++|..++-... ...+.+.+.+++| .+ .|.|||+++|--.
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4555554 58999999998876541 1223455555555 34 4999999988532
Q ss_pred -------HHhc-cCEEEEEeCCE
Q psy4634 128 -------EARQ-ANVVGLMRKGV 142 (249)
Q Consensus 128 -------~~~~-~Dri~vl~~G~ 142 (249)
.++. ||.++.+...+
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEecc
Confidence 2344 88887776543
No 239
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=33.94 E-value=58 Score=22.74 Aligned_cols=49 Identities=8% Similarity=0.107 Sum_probs=38.0
Q ss_pred HHHHHhcC-CCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 77 IAVTLLHT-PSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 77 iArAL~~~-P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
+..++... ++.+++| ...+.+|......+.++.+++.++|.++.++.-.
T Consensus 34 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 84 (116)
T 1th8_B 34 VTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVS 84 (116)
T ss_dssp HHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 33444343 7888999 7888999999999999999988888888776543
No 240
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=33.83 E-value=95 Score=21.78 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=22.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
.+|+++|+|--..+.|- .++.+.|++. ..+.-||+.|.
T Consensus 48 ~~~dlvilD~~lp~~~g---~~~~~~l~~~-~~~~~ii~ls~ 85 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTG---LEVLAEIRKK-HLNIKVIIVTT 85 (133)
T ss_dssp HCCSEEEECSSCSSSCH---HHHHHHHHHT-TCSCEEEEEES
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHHH-CCCCcEEEEec
Confidence 58999999977766663 2344455542 22444544443
No 241
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=33.65 E-value=1.2e+02 Score=21.70 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=24.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
-.+|+++|+|--..+.|- ..+.+.+++....-..|+++++.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGG---IEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp TTCCSEEEECSCCSSSCH---HHHHHHHHHHCTTCCEEEEESCC
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHHhCCCCeEEEEECCC
Confidence 457999999987777663 34555555543223344555443
No 242
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=33.54 E-value=1e+02 Score=22.19 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE-EE
Q psy4634 43 EFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI-II 121 (249)
Q Consensus 43 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Ti-ii 121 (249)
...+.+...++..+-. ..+...+.|+.-.-.+ --.+|+++|+|--..+.|- ..+.+.|++.. ....| ++
T Consensus 26 ~~~~~l~~~L~~~~~~---~~v~~~~~~~~a~~~l---~~~~~dlii~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~ 95 (152)
T 3eul_A 26 LFREGVVRALSLSGSV---NVVGEADDGAAALELI---KAHLPDVALLDYRMPGMDG---AQVAAAVRSYE-LPTRVLLI 95 (152)
T ss_dssp HHHHHHHHHHHHHSSE---EEEEEESSHHHHHHHH---HHHCCSEEEEETTCSSSCH---HHHHHHHHHTT-CSCEEEEE
T ss_pred HHHHHHHHHHhhCCCe---EEEEEeCCHHHHHHHH---HhcCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCeEEEE
Confidence 3445555666654421 1133344443322222 2368999999987777663 23444444432 23444 45
Q ss_pred EecCh
Q psy4634 122 TTHYI 126 (249)
Q Consensus 122 vtH~l 126 (249)
+++.-
T Consensus 96 s~~~~ 100 (152)
T 3eul_A 96 SAHDE 100 (152)
T ss_dssp ESCCC
T ss_pred EccCC
Confidence 55443
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=33.19 E-value=31 Score=34.03 Aligned_cols=57 Identities=9% Similarity=0.148 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHHHhC-CcEEEEEecChhHH
Q psy4634 73 RRVSIAVTLLHTPSLVILDEPTSGLD----------PMLAHYFWQYLQRMSSN-GQTIIITTHYIEEA 129 (249)
Q Consensus 73 QRv~iArAL~~~P~iLlLDEPtsgLD----------~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~ 129 (249)
-+..+..+....|.++++||+-+.+. ......+.+.+..+.+. +..++.+||+.+.+
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 34456666677899999999954432 12223333444433323 56888899987655
No 244
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=32.66 E-value=89 Score=22.08 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=24.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
-..|+++++|--..+.|- ..+.+.|++....-..|+++++.
T Consensus 42 ~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTG---VDFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCH---HHHHHHHHHHCTTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCcEEEEeCCC
Confidence 367999999987777774 24445555532223345555554
No 245
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=32.44 E-value=42 Score=31.01 Aligned_cols=55 Identities=7% Similarity=0.195 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHH
Q psy4634 75 VSIAVTLLHTPSLVILDEPT----------SGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEA 129 (249)
Q Consensus 75 v~iArAL~~~P~iLlLDEPt----------sgLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~ 129 (249)
-.+..|--..|.+|+|||-- +.+.......++..+..+... +..||.+|+..+.+
T Consensus 288 ~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 34555666789999999961 222233444555555554333 55667788877543
No 246
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=32.44 E-value=67 Score=25.36 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=33.7
Q ss_pred hcCCCEEEEeCCCCCCCHH-------------------HHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 82 LHTPSLVILDEPTSGLDPM-------------------LAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~-------------------~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+.||+|++||=|..---+. .++.+.+.++++.+.|..|+++.--++..
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~ 91 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDL 91 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHH
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccHH
Confidence 3799999999775432111 33446777778777799999998888764
No 247
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=32.06 E-value=82 Score=24.91 Aligned_cols=59 Identities=17% Similarity=0.048 Sum_probs=39.6
Q ss_pred HhcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHhC-CcEEEEEecChh----------HHhc-cCEEEEEe
Q psy4634 81 LLHTPSLVILDEPTS----GLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE----------EARQ-ANVVGLMR 139 (249)
Q Consensus 81 L~~~P~iLlLDEPts----gLD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~----------~~~~-~Dri~vl~ 139 (249)
--.+|+++++|--+. .-|......+...|.+++++ |.|+++++|.-. ..+. ||-|+.|+
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 346899999996432 12445556677777777665 999999998532 1233 78887775
No 248
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=31.83 E-value=1.8 Score=37.60 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=37.5
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEE
Q psy4634 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVIL 90 (249)
Q Consensus 11 Ig~v~Q~~~l~~~lTv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlL 90 (249)
+|++ |...+++.+|+.+|+.+...++.... .+..+.. ..+. .+|+..+.+.+.+|+++|+
T Consensus 131 ~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------~i~~P~~-----~~~~--~~~~~~~~~~~~~~~ivIl 190 (308)
T 1sq5_A 131 RGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------NVTAPVY-----SHLI--YDVIPDGDKTVVQPDILIL 190 (308)
T ss_dssp HTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------CEEECCE-----ETTT--TEECTTCCEEEC-CCEEEE
T ss_pred CCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------ceecccc-----cccc--cCcccccceecCCCCEEEE
Confidence 4566 66666667778887776655432110 0111111 1111 1333322345568999999
Q ss_pred eCCCCCCCH
Q psy4634 91 DEPTSGLDP 99 (249)
Q Consensus 91 DEPtsgLD~ 99 (249)
|.|....++
T Consensus 191 EG~~l~~~~ 199 (308)
T 1sq5_A 191 EGLNVLQSG 199 (308)
T ss_dssp ECTTTTCCG
T ss_pred CchhhCCCc
Confidence 999998874
No 249
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=31.69 E-value=53 Score=27.67 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 84 TPSLVILDEPTSGLD-PMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+++++++||.- .+. ......+.+.+.+.. .+..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence 78999999984 344 666677777777643 357788888887643
No 250
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=31.50 E-value=52 Score=27.07 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=30.3
Q ss_pred HHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh----CC--cEEEEEecChhHH
Q psy4634 76 SIAVTLLHTPSLVILDEPT-----SGLDPMLAHYFWQYLQRMSS----NG--QTIIITTHYIEEA 129 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~L~~l~~----~g--~TiiivtH~l~~~ 129 (249)
.+..+...+|.+|++||.- ...++.....+++.|.++.. .+ ..+|.+|+..+.+
T Consensus 116 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 116 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 3445555779999999941 11222334455666655432 22 2356677777554
No 251
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=31.32 E-value=54 Score=26.12 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy4634 94 TSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123 (249)
Q Consensus 94 tsgLD~~~~~~i~~~L~~l~~~g~Tiiivt 123 (249)
.+||++...+.+.+++....++|..+.+++
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~s 59 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 458999999999999999888898765554
No 252
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=31.31 E-value=61 Score=24.09 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=26.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
.+++++++ -+|+.+......++.++.+.+..++++.|..+...
T Consensus 80 ~~~~~~i~-----v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 80 EKPDLVVN-----IVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HCCSEEEE-----EEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CCCCEEEE-----EecCCchhHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 47876654 11222223344556665556889999999988764
No 253
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=31.21 E-value=27 Score=32.92 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=35.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+.||+|+++|.+.+. .+++.+.+.++.+.|+.++++..+++..
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~~g~~lvii~~~I~~~ 255 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQTGKPLLIIAEDVEGE 255 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHTTTCCEEEEESCBCHH
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHhcCCCEEEEcCCccHH
Confidence 579999999998663 4557788888887899999999888653
No 254
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=30.94 E-value=1.1e+02 Score=21.96 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=24.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
-..|+++|+|-...+.|-. .+.+.|++.. ....||++|..
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls~~ 88 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSY-PDIERVVISGY 88 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHC-TTSEEEEEECG
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCcEEEEecC
Confidence 4579999999888777643 4455555532 24555555443
No 255
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=30.91 E-value=1.3e+02 Score=20.68 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=22.8
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 84 TPSLVILDEPTSG-LDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 84 ~P~iLlLDEPtsg-LD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
+|+++|+|--..+ .|-. .+.+.+++....-..|+++++.
T Consensus 50 ~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp CCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESSC
T ss_pred CCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCCc
Confidence 7999999987765 6642 4555555532222344455444
No 256
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=30.88 E-value=1e+02 Score=22.09 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE-EE
Q psy4634 43 EFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI-II 121 (249)
Q Consensus 43 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Ti-ii 121 (249)
...+.+...++..+- ...+...+.|+.- +...--.+|+++|+|--..+.|- ..+.+.|++.. .+..| ++
T Consensus 31 ~~~~~l~~~L~~~~~---~~~v~~~~~~~~a---l~~l~~~~~dlii~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~l 100 (150)
T 4e7p_A 31 MLRDAMCQLLTLQPD---VESVLQAKNGQEA---IQLLEKESVDIAILDVEMPVKTG---LEVLEWIRSEK-LETKVVVV 100 (150)
T ss_dssp HHHHHHHHHHHTSTT---EEEEEEESSHHHH---HHHHTTSCCSEEEECSSCSSSCH---HHHHHHHHHTT-CSCEEEEE
T ss_pred HHHHHHHHHHHhCCC---cEEEEEECCHHHH---HHHhhccCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCeEEEE
Confidence 344555555553321 1223444444422 22223468999999987777663 23444455432 23444 44
Q ss_pred EecC
Q psy4634 122 TTHY 125 (249)
Q Consensus 122 vtH~ 125 (249)
+++.
T Consensus 101 s~~~ 104 (150)
T 4e7p_A 101 TTFK 104 (150)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 4443
No 257
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=30.69 E-value=48 Score=24.55 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=27.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
+..+|++||. ..|++..+..+.+.+... ..+..+|.+|+
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~ 114 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGD 114 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEES
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECC
Confidence 6689999998 468888888888888432 22344555544
No 258
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.62 E-value=1.1e+02 Score=21.48 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=21.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
-.+|+++|+|- ..+. ....+.+.+++.. .+..+|+.|.
T Consensus 46 ~~~~dlvi~d~-~~~~---~g~~~~~~l~~~~-~~~pii~ls~ 83 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGE---ESLNLIRRIREEF-PDTKVAVLSA 83 (142)
T ss_dssp TSCCSEEEEEC-TTTH---HHHHHHHHHHHHC-TTCEEEEEES
T ss_pred ccCCCEEEEeC-CCCC---cHHHHHHHHHHHC-CCCCEEEEEC
Confidence 36899999997 5442 3344555555532 2444544443
No 259
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=30.28 E-value=1.2e+02 Score=21.21 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=23.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE-EEEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI-IITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Ti-iivtH~ 125 (249)
-..|+++|+|--..+.|- .++.+.+++.. .+..+ ++++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~ 85 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEG---TELLEKAHKLR-PGMKKIMVTGYA 85 (132)
T ss_dssp HSCCSEEEECSBCSSSBH---HHHHHHHHHHC-TTSEEEEEESCC
T ss_pred cCCCCEEEEecCCCCCch---HHHHHHHHhhC-CCCcEEEEeccc
Confidence 368999999977766663 23444555432 24444 455543
No 260
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=29.87 E-value=89 Score=28.33 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=34.7
Q ss_pred cCChHHHHHHHHHHHHh--cCCC--EEEEeCCCC----CC--C-HHHHHHHHHHHHHHHhC-CcEEEEEecC
Q psy4634 66 TLSGGQVRRVSIAVTLL--HTPS--LVILDEPTS----GL--D-PMLAHYFWQYLQRMSSN-GQTIIITTHY 125 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~--~~P~--iLlLDEPts----gL--D-~~~~~~i~~~L~~l~~~-g~TiiivtH~ 125 (249)
.+|-.+-. +.++.+. ++|+ ++++|--.. +. + ......+...|+.++++ |.+||+++|-
T Consensus 290 ~~s~~~i~--~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 290 GQSVNYIW--SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp SCBHHHHH--HHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCCHHHHH--HHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 35555432 2334443 4799 999995432 10 1 12234566667777766 9999999994
No 261
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=29.82 E-value=1.5e+02 Score=24.41 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=28.0
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 84 TPSLVILDEPTS--------GLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 84 ~P~iLlLDEPts--------gLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
++.+|++||.-. ..++.....+.+.+.+- ..+..+|++++.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-RDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-TTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-CCCEEEEEeCCh
Confidence 688999999752 23666667777777652 335677777764
No 262
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=29.77 E-value=55 Score=28.67 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=27.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
.++++++|-|..|++....+ .++ .+..++++|.+....
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~~-------~l~-~~g~ivyvsc~p~t~ 332 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETEK-------MVQ-AYPRILYISCNPETL 332 (369)
T ss_dssp CEEEEEECCCTTCCCHHHHH-------HHT-TSSEEEEEESCHHHH
T ss_pred CCCEEEECcCccccHHHHHH-------HHh-CCCEEEEEECCHHHH
Confidence 57999999999999864322 222 567888888877654
No 263
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.73 E-value=98 Score=28.24 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-CCcEEEEEecChhHHh
Q psy4634 73 RRVSIAVTLLHTPSLVILDEPTS----------GLDPMLAHYFWQYLQRMS---S-NGQTIIITTHYIEEAR 130 (249)
Q Consensus 73 QRv~iArAL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~---~-~g~TiiivtH~l~~~~ 130 (249)
-|-.+..|-.+.|-|+++||--+ +-|......+..+|..+- . .+.-||.+|++.+.+.
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 45556677778999999999843 234445555666666652 2 2567899999887664
No 264
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=29.64 E-value=67 Score=26.66 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
.++.++++||. ..+++.....+.+.+.+. ..+..+|+++...+.
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMF-SSNVRFILSCNYSSK 152 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhc-CCCCeEEEEeCCccc
Confidence 56899999996 456777777777777663 335667777776654
No 265
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.61 E-value=1.1e+02 Score=21.10 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEE
Q psy4634 44 FRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIIT 122 (249)
Q Consensus 44 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~Tiiiv 122 (249)
..+.+.+.++..|.. +...+.|+. ++...--.+|+++|+|--..+.|- ..+.+.+++.. ..+..||++
T Consensus 15 ~~~~l~~~L~~~g~~-----v~~~~~~~~---a~~~l~~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 15 AAETFKELLEMLGFQ-----ADYVMSGTD---ALHAMSTRGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp HHHHHHHHHHHTTEE-----EEEESSHHH---HHHHHHHSCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEE
T ss_pred HHHHHHHHHHHcCCC-----EEEECCHHH---HHHHHHhcCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEE
Confidence 345556666655442 223334432 122222368999999987777764 34555555531 124445544
Q ss_pred ec
Q psy4634 123 TH 124 (249)
Q Consensus 123 tH 124 (249)
|-
T Consensus 84 s~ 85 (127)
T 3i42_A 84 SG 85 (127)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 266
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=29.48 E-value=81 Score=21.89 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=21.6
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
--.+|+++|+|-...+.| ...+.+.+++....-..|+++++.-
T Consensus 48 ~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~~~~~ii~~t~~~~ 90 (130)
T 3eod_A 48 GGFTPDLMICDIAMPRMN---GLKLLEHIRNRGDQTPVLVISATEN 90 (130)
T ss_dssp TTCCCSEEEECCC--------CHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred hcCCCCEEEEecCCCCCC---HHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 346799999997655544 2344444554322234555555543
No 267
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=29.45 E-value=53 Score=24.53 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=26.3
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 87 LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 87 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
+|+-|+-...=||..+..+.+++....+.|..|.++|.+-..
T Consensus 58 LLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~~~~~ 99 (124)
T 1x52_A 58 LLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVS 99 (124)
T ss_dssp EEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHH
T ss_pred EEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 334444333337888899999555555568888777765433
No 268
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.43 E-value=1.4e+02 Score=20.58 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=23.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH 124 (249)
-.+|+++|+|--..+.|- ..+.+.+++... .+..||+.|.
T Consensus 45 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HSCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeC
Confidence 468999999987777663 334444554311 2344444443
No 269
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=29.30 E-value=1.3e+02 Score=21.89 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q psy4634 42 EEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121 (249)
Q Consensus 42 ~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiii 121 (249)
....+.+...++..|.. .....+.++.-.-. .+.--.+|+++|+|--..+.|- ..+.+.|++....-..|++
T Consensus 46 ~~~~~~l~~~L~~~g~~----v~~~~~~~~~al~~-l~~~~~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~ii~l 117 (157)
T 3hzh_A 46 VFTVKQLTQIFTSEGFN----IIDTAADGEEAVIK-YKNHYPNIDIVTLXITMPKMDG---ITCLSNIMEFDKNARVIMI 117 (157)
T ss_dssp HHHHHHHHHHHHHTTCE----EEEEESSHHHHHHH-HHHHGGGCCEEEECSSCSSSCH---HHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCe----EEEEECCHHHHHHH-HHhcCCCCCEEEEeccCCCccH---HHHHHHHHhhCCCCcEEEE
Confidence 34455566666655432 12234444332211 1222227899999987777764 3455555554333344555
Q ss_pred EecC
Q psy4634 122 TTHY 125 (249)
Q Consensus 122 vtH~ 125 (249)
+++.
T Consensus 118 s~~~ 121 (157)
T 3hzh_A 118 SALG 121 (157)
T ss_dssp ESCC
T ss_pred eccC
Confidence 5553
No 270
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=29.23 E-value=95 Score=24.82 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=31.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN--GQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~TiiivtH 124 (249)
..+|+++|+..+.+.++......+..++..+... ..++|+.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3578999999998889887766666665544221 358888888
No 271
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=29.15 E-value=30 Score=29.61 Aligned_cols=44 Identities=9% Similarity=-0.016 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHHHH----hCCcEEEEEecChh
Q psy4634 84 TPSLVILDEPTSGLDPM-LAHYFWQYLQRMS----SNGQTIIITTHYIE 127 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~-~~~~i~~~L~~l~----~~g~TiiivtH~l~ 127 (249)
+|.+|++||.-.-.+.. ....+..+++... ..+.++|.+|++.+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 46799999975432221 3344444444332 33568899998773
No 272
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.94 E-value=1.3e+02 Score=20.21 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 45 RAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 45 ~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
...+...++..|. .+...+.|+.-. ...--.+|+++++|--..+.|-. .+.+.+++....-..|++++|
T Consensus 13 ~~~l~~~l~~~g~-----~v~~~~~~~~a~---~~~~~~~~dlil~D~~l~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 13 RHHLKVQIQDAGH-----QVDDAEDAKEAD---YYLNEHIPDIAIVDLGLPDEDGL---SLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHHHTTC-----EEEEESSHHHHH---HHHHHSCCSEEEECSCCSSSCHH---HHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHHhhcCC-----EEEEeCCHHHHH---HHHhccCCCEEEEecCCCCCCHH---HHHHHHHhcCCCCCEEEEecC
Confidence 3445555554432 233445554322 22223689999999777666642 344444442222234455554
Q ss_pred C
Q psy4634 125 Y 125 (249)
Q Consensus 125 ~ 125 (249)
.
T Consensus 82 ~ 82 (121)
T 2pl1_A 82 E 82 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 273
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.66 E-value=1.3e+02 Score=21.13 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=23.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH--HHhCCcEEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQR--MSSNGQTIIITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~--l~~~g~TiiivtH~ 125 (249)
.+|+++|+|--..+ ......+.+.|++ ....-..|+++++.
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEESCC
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 67999999965540 2344556666666 32233445555554
No 274
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=28.12 E-value=1.3e+02 Score=21.03 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=23.2
Q ss_pred hcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTS-----GLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPts-----gLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
-.+|+++|+|--.. +.|- ..+.+.|++....-..|+++++.
T Consensus 45 ~~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 45 EENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQYRDLPVVLFTAYA 90 (140)
T ss_dssp HSCEEEEEEETTTTC-----CCH---HHHHHHHHHHCTTCCEEEEEEGG
T ss_pred cCCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhCcCCCEEEEECCC
Confidence 36799999997665 5553 24445555532223345555554
No 275
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=28.02 E-value=66 Score=25.88 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy4634 94 TSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123 (249)
Q Consensus 94 tsgLD~~~~~~i~~~L~~l~~~g~Tiiivt 123 (249)
-+||||.....+.++++...++|..+.+++
T Consensus 30 v~gLdp~~a~al~~m~~aA~~~Gi~l~v~s 59 (179)
T 1xp2_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 368999999999999998877787754443
No 276
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=27.81 E-value=1.2e+02 Score=20.72 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
-.+|+++++|=-..+.|- .++.+.+++. ..-..|+++++.-
T Consensus 44 ~~~~dlii~D~~~p~~~g---~~~~~~lr~~-~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDG---VEVCREVRKK-YDMPIIMLTAKDS 84 (120)
T ss_dssp TTCCSEEEEETTSTTTHH---HHHHHHHHTT-CCSCEEEEEESSC
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhc-CCCCEEEEECCCC
Confidence 468999999987776653 2344444431 1223445555543
No 277
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=27.70 E-value=1.2e+02 Score=26.49 Aligned_cols=52 Identities=10% Similarity=0.214 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEecC
Q psy4634 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS--NGQTIIITTHY 125 (249)
Q Consensus 69 gGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~--~g~TiiivtH~ 125 (249)
|..-=.++++.+|+..|+++++=|- ..| .+.+.+.+++..+ ++..||+++--
T Consensus 170 GR~aG~lAl~a~lA~ga~~iliPE~--~~~---~~~i~~~i~~~~~~gk~~~iIvvaEG 223 (319)
T 1zxx_A 170 GRNCGDIAMRVGVACGADAIVIPER--PYD---VEEIANRLKQAQESGKDHGLVVVAEG 223 (319)
T ss_dssp CTTCCHHHHHHHHHTTCSEEECTTS--CCC---HHHHHHHHHHHHHTTCCCEEEEEETT
T ss_pred CCCHHHHHHHHHHhcCCCEEEeCCC--CCC---HHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3333478999999999999999542 233 3466666766433 46677777653
No 278
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=27.58 E-value=1.4e+02 Score=25.41 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=37.8
Q ss_pred CCEEEEeCCCC--------------CCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc
Q psy4634 85 PSLVILDEPTS--------------GLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ 131 (249)
Q Consensus 85 P~iLlLDEPts--------------gLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~ 131 (249)
-+++.+|-|-- +-+.....++.+.++++.++|.-+++|-|+-++++.
T Consensus 188 ~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~g~~~~lS~~d~~~i~~ 248 (284)
T 2dpm_A 188 GDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEE 248 (284)
T ss_dssp TCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTTTCEEEEEEESCHHHHH
T ss_pred CCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCCHHHHH
Confidence 37888998852 356677889999999987778899999999888753
No 279
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=27.41 E-value=51 Score=31.00 Aligned_cols=48 Identities=13% Similarity=0.371 Sum_probs=36.4
Q ss_pred hcCCCEEEEeCC-------------CCCCCHH------HHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 82 LHTPSLVILDEP-------------TSGLDPM------LAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 82 ~~~P~iLlLDEP-------------tsgLD~~------~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+.||+|+++|-| .+..+.. .++.+.+.++++.+.|..+|++.-+++..
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~ 297 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDV 297 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHH
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHH
Confidence 689999999999 3333332 33446788888888899999999998754
No 280
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=26.51 E-value=1.6e+02 Score=21.09 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
-.+|+++|+|--..+.|- ..+.+.|++.. ....||+.|-
T Consensus 56 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 94 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDG---PTLLARIHQQY-PSTTRILLTG 94 (153)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHHC-TTSEEEEECC
T ss_pred cCCCCEEEEeCCCCcCcH---HHHHHHHHhHC-CCCeEEEEEC
Confidence 368999999987777664 34445555532 3455555544
No 281
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=26.25 E-value=77 Score=26.19 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=27.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec-ChhH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH-YIEE 128 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH-~l~~ 128 (249)
+-+.+|.|= |.++...+++++.+++....-.+-|+.|| +.+-
T Consensus 83 ~~~~ilIDt---g~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~H~DH 125 (270)
T 4eyb_A 83 GGRVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTHAHQDK 125 (270)
T ss_dssp TTEEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHH
T ss_pred CCEEEEEeC---CCCHHHHHHHHHHHHHhcCCceEEEEeCCCChhh
Confidence 445677774 56788888888888775333345577777 4443
No 282
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=26.17 E-value=1.6e+02 Score=22.62 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=24.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
-..|+++|+|--..+.|- ..+.+.+++....-..|++++|.-
T Consensus 44 ~~~~dlvllD~~l~~~~g---~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 44 NEPFDVVILDIMLPVHDG---WEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHTTCCCCEEEEESSCH
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCEEEEeCCCC
Confidence 468999999987777664 234445554322233455555544
No 283
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.02 E-value=84 Score=28.81 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-CCcEEEEEecChhHHhc
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTS----------GLDPMLAHYFWQYLQRMS---S-NGQTIIITTHYIEEARQ 131 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~---~-~g~TiiivtH~l~~~~~ 131 (249)
|-.+..|-.+.|-|+++||--+ +-+......+..+|.++- . .+.-||.+|++.+.+..
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 5556666678899999998632 224445556666666552 2 35678999999887643
No 284
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=25.61 E-value=1.5e+02 Score=19.79 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=24.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+|+++++|--..+.|-. .+.+.+++ ...-..++++++.-
T Consensus 44 ~~~dlvl~D~~l~~~~g~---~~~~~l~~-~~~~~ii~~s~~~~ 83 (120)
T 2a9o_A 44 EQPDIIILDLMLPEIDGL---EVAKTIRK-TSSVPILMLSAKDS 83 (120)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHH-HCCCCEEEEESCCS
T ss_pred CCCCEEEEeccCCCCCHH---HHHHHHHh-CCCCCEEEEecCCc
Confidence 589999999877776642 34455554 22233455555543
No 285
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=25.53 E-value=1.3e+02 Score=21.63 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=23.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE-EEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI-IITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Ti-iivtH~ 125 (249)
..|+++|+|--..+.|.. .+.+.+++.. .+..| +++++.
T Consensus 46 ~~~dliild~~l~~~~g~---~~~~~l~~~~-~~~pii~ls~~~ 85 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL---ALFRKILALD-PDLPMILVTGHG 85 (155)
T ss_dssp TCCSEEEEESCCSSSCHH---HHHHHHHHHC-TTSCEEEEECGG
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhhC-CCCCEEEEECCC
Confidence 579999999877776642 4555555532 23444 444443
No 286
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=25.46 E-value=1.6e+02 Score=20.92 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHh-cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecC
Q psy4634 79 VTLL-HTPSLVILD-EPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHY 125 (249)
Q Consensus 79 rAL~-~~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~ 125 (249)
.++. ..|+-+++| ...+.+|...-..+..+.+++++ .|..+.++.-.
T Consensus 41 ~~l~~~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~ 90 (121)
T 3t6o_A 41 AAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVS 90 (121)
T ss_dssp HTTCCSSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCC
T ss_pred HHHhhcCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4443 568899999 88999999999999999999888 78888777543
No 287
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.28 E-value=1.5e+02 Score=20.95 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=23.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE-EEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI-IITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Ti-iivtH~ 125 (249)
..|+++|+|--..+.| ...+.+.|++.. ....| +++++.
T Consensus 66 ~~~dlvi~D~~l~~~~---g~~~~~~l~~~~-~~~~ii~lt~~~ 105 (146)
T 4dad_A 66 DAFDILMIDGAALDTA---ELAAIEKLSRLH-PGLTCLLVTTDA 105 (146)
T ss_dssp TTCSEEEEECTTCCHH---HHHHHHHHHHHC-TTCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCcc---HHHHHHHHHHhC-CCCcEEEEeCCC
Confidence 6899999997766533 344555555532 23444 444443
No 288
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=25.24 E-value=59 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=26.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 85 P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
-..+|.| +|.++.....+.+.++++..+..+.|+.||-
T Consensus 32 ~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~ 69 (227)
T 3iog_A 32 KGVTVVG---ATWTPDTARELHKLIKRVSRKPVLEVINTNY 69 (227)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHTTCCSCEEEEECSSS
T ss_pred CeEEEEE---CCCChHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 3577788 4566777778888887753345667888883
No 289
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.22 E-value=1e+02 Score=27.94 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH---h-CCcEEEEEecChhHH
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTSG----------LDPMLAHYFWQYLQRMS---S-NGQTIIITTHYIEEA 129 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPtsg----------LD~~~~~~i~~~L~~l~---~-~g~TiiivtH~l~~~ 129 (249)
|-.+..|-.+.|-|+++||--+- -|....+.+.++|.++- . .+..||.+|++.+.+
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 34455666678999999996432 24455556666666653 2 366789999988654
No 290
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.19 E-value=1.8e+02 Score=20.37 Aligned_cols=73 Identities=19% Similarity=0.119 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy4634 44 FRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123 (249)
Q Consensus 44 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiivt 123 (249)
..+.+...++..+. .+...+.++.-.-. ...--.+|+++|+|--..+.|-. .+.+.+++....-..|++++
T Consensus 15 ~~~~l~~~l~~~g~-----~v~~~~~~~~a~~~-~~~~~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 15 ILQNIKFLLEIDGN-----EVLTASSSTEGLRI-FTENCNSIDVVITDMKMPKLSGM---DILREIKKITPHMAVIILTG 85 (143)
T ss_dssp HHHHHHHHHHHTTC-----EEEEESSHHHHHHH-HHHTTTTCCEEEEESCCSSSCHH---HHHHHHHHHCTTCEEEEEEC
T ss_pred HHHHHHHHHHhCCc-----eEEEeCCHHHHHHH-HHhCCCCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCeEEEEEC
Confidence 34555666665443 12233444322111 11113689999999887776643 34455555322223445555
Q ss_pred cC
Q psy4634 124 HY 125 (249)
Q Consensus 124 H~ 125 (249)
+.
T Consensus 86 ~~ 87 (143)
T 3jte_A 86 HG 87 (143)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 291
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=25.15 E-value=1.8e+02 Score=20.31 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCcEEEEEec
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMS---SNGQTIIITTH 124 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~---~~g~TiiivtH 124 (249)
..|+++|+|--..+.|- ..+.+.|++.. .....+|++|.
T Consensus 59 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 59 RWPSIICIDINMPGING---WELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp CCCSEEEEESSCSSSCH---HHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHHhhhhccCCCeEEEEeC
Confidence 67999999988777764 34555555521 12444554443
No 292
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=25.09 E-value=56 Score=27.92 Aligned_cols=49 Identities=12% Similarity=0.240 Sum_probs=32.4
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
-...+..+.+++++||+-..+.......+.+.+.+. ..+..+|+++..+
T Consensus 69 ~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p-~~~~~~il~~~~~ 117 (343)
T 1jr3_D 69 QAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLL-HDDLLLIVRGNKL 117 (343)
T ss_dssp HHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTC-BTTEEEEEEESCC
T ss_pred cCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcC-CCCeEEEEEcCCC
Confidence 344567789999999997767666666666666543 2355566666553
No 293
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=25.01 E-value=98 Score=26.00 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=10.8
Q ss_pred hcCCCEEEEeCCC
Q psy4634 82 LHTPSLVILDEPT 94 (249)
Q Consensus 82 ~~~P~iLlLDEPt 94 (249)
-..|.+|++||-=
T Consensus 97 ~~~~~vl~iDEiD 109 (293)
T 3t15_A 97 KGNMCCLFINDLD 109 (293)
T ss_dssp TSSCCCEEEECCC
T ss_pred cCCCeEEEEechh
Confidence 4589999999983
No 294
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=24.99 E-value=1.4e+02 Score=26.04 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeC-CCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEecC
Q psy4634 71 QVRRVSIAVTLLHTPSLVILDE-PTSGLDPMLAHYFWQYLQRMSS--NGQTIIITTHY 125 (249)
Q Consensus 71 qkQRv~iArAL~~~P~iLlLDE-PtsgLD~~~~~~i~~~L~~l~~--~g~TiiivtH~ 125 (249)
.-=.++++.+|+..|+++++=| |+ |. +.+.+.+++..+ ++..||+++--
T Consensus 173 ~aG~lAl~a~lA~ga~~iliPE~~~---~~---~~i~~~i~~~~~~gk~~~iIvvaEG 224 (320)
T 1pfk_A 173 YCGDLTLAAAIAGGCEFVVVPEVEF---SR---EDLVNEIKAGIAKGKKHAIVAITEH 224 (320)
T ss_dssp TCCHHHHHHHHHTTCSEEECTTSCC---CH---HHHHHHHHHHHHTTCSCEEEEEESS
T ss_pred CHHHHHHHHHHhcCCCEEEeCCCCC---CH---HHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3346899999999999999954 44 32 456666666432 35677777653
No 295
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=24.98 E-value=69 Score=30.00 Aligned_cols=48 Identities=17% Similarity=0.389 Sum_probs=36.6
Q ss_pred hcCCCEEEEeCC-------------CCCCCHH------HHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 82 LHTPSLVILDEP-------------TSGLDPM------LAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 82 ~~~P~iLlLDEP-------------tsgLD~~------~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+.||+|+++|-| .+..+.. .++.+.+.++++.+.|..++++.-+++..
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~ 298 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDM 298 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHH
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHH
Confidence 689999999999 4444432 23446788888888899999999998754
No 296
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=24.94 E-value=2.6e+02 Score=23.09 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=43.3
Q ss_pred HHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHhC-CcEEEEEecChhHHh-c-cCEEEE
Q psy4634 77 IAVTLLHTPSLVILDEPTSG-------LDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEAR-Q-ANVVGL 137 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsg-------LD~~~~~~i~~~L~~l~~~-g~TiiivtH~l~~~~-~-~Dri~v 137 (249)
+.+++-...+++.|-|+... |+......+.+.++++.++ |.. +++..+.+.+. . ||-|.+
T Consensus 49 ~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~-liInd~~~lA~~~gAdGVHL 118 (243)
T 3o63_A 49 AEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGAL-FAVNDRADIARAAGADVLHL 118 (243)
T ss_dssp HHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCE-EEEESCHHHHHHHTCSEEEE
T ss_pred HHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCE-EEEeCHHHHHHHhCCCEEEe
Confidence 44567788999999999864 8988888888888888654 655 44445566654 3 787655
No 297
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=24.83 E-value=31 Score=30.84 Aligned_cols=43 Identities=12% Similarity=0.048 Sum_probs=32.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
.|-++++||..+-+.. ..+.+++.+.++.|..+++++|.++.+
T Consensus 279 ~~~~~~lDE~~~l~~~---~~l~~~~~~~R~~g~~~~~~~Qs~~ql 321 (437)
T 1e9r_A 279 RRLWLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQL 321 (437)
T ss_dssp CCEEEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred ccEEEEEEcccccccc---hhHHHHHHHHhccCCEEEEEecCHHHH
Confidence 3568999998775431 146677777776799999999999744
No 298
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.66 E-value=1.2e+02 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=23.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
.+|+++|+|--..+.|-. .+.+.|++.. .+..||++|..
T Consensus 50 ~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~~ 88 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGGL---EMLDRIKAGG-AKPYVIVISAF 88 (137)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHHTT-CCCEEEECCCC
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCcEEEEecC
Confidence 589999999877776642 3444454432 24445555443
No 299
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=24.35 E-value=1.7e+02 Score=20.60 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=17.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQR 111 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~ 111 (249)
..|+++|+|--..+.|- ..+.+.|++
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~ 76 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKK 76 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHT
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHc
Confidence 48999999987777664 234444444
No 300
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.31 E-value=66 Score=26.66 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~ 128 (249)
+++++++||. -.++......+.+.+.+. ..+..+|++|++.+.
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~-~~~~~~il~~~~~~~ 149 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELY-SNSTRFAFACNQSNK 149 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhcc-CCCceEEEEeCChhh
Confidence 4889999995 446666666677777663 245677888877654
No 301
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=23.89 E-value=24 Score=30.97 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHh--------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 69 GGQVRRVSIAVTLL--------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 69 gGqkQRv~iArAL~--------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
++++++-.+.+++- .+|+++. +|++|......+++.|.++..+ +..+|.+.+.+
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~----iSA~~g~Gi~~L~~~I~~~~~~----~~~~~~~~~~R 290 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIR----ISARSGEGISEMWDKMKDFQDL----MLASGELTAKR 290 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEE----CCTTTCTTHHHHHHHHHHHHHH----HHHHSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEE----EecCCCCCHHHHHHHHHHHHHH----HhhCchHHHHH
Confidence 45555556655552 2566654 9999999999999999987543 35678887664
No 302
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=23.78 E-value=1.7e+02 Score=24.86 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHH-----hCCcEEEEEecChhHH----h-ccCEEE
Q psy4634 74 RVSIAVTLLHTPSLVILDEPTS-------GLDPMLAHYFWQYLQRMS-----SNGQTIIITTHYIEEA----R-QANVVG 136 (249)
Q Consensus 74 Rv~iArAL~~~P~iLlLDEPts-------gLD~~~~~~i~~~L~~l~-----~~g~TiiivtH~l~~~----~-~~Dri~ 136 (249)
|-.+..|-..+|.++++||.-+ +......+.+.+++..+. ..+..+|.+|...+.+ . .+|+.+
T Consensus 95 ~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i 174 (322)
T 1xwi_A 95 KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRI 174 (322)
T ss_dssp HHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEE
T ss_pred HHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEE
Confidence 3344455567899999999743 222233344444444442 1245667778766433 2 366655
Q ss_pred EE
Q psy4634 137 LM 138 (249)
Q Consensus 137 vl 138 (249)
.+
T Consensus 175 ~i 176 (322)
T 1xwi_A 175 YI 176 (322)
T ss_dssp EC
T ss_pred Ee
Confidence 44
No 303
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.60 E-value=1.3e+02 Score=20.78 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMS--SNGQTIIITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~TiiivtH~ 125 (249)
..|+++++|--..+.|- .++.+.|++.. ..-..|+++++.
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEecCC
Confidence 57999999987777664 24455555532 122345555554
No 304
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=23.50 E-value=1.3e+02 Score=22.64 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEec
Q psy4634 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTH 124 (249)
Q Consensus 71 qkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-TiiivtH 124 (249)
+.|+-.+-. .+.+-++++-|+- ||-+ ..|..+.++|..+. +|. -+|++.+
T Consensus 21 ~~Q~~~l~~-~~~g~~~i~~D~~-SG~~-~~Rp~l~~ll~~~~-~g~id~vvv~~ 71 (143)
T 3ilx_A 21 ANQVKYLEE-QVKEYDLVITDIG-SGLN-MKRKGFLKLLRMIL-NNEVSRVITAY 71 (143)
T ss_dssp HHHHHHHHH-HCSCCSEEEEEES-CTTC-TTCHHHHHHHHHHH-TTCEEEEEESS
T ss_pred HHHHHHHHH-HhCCCeEEEEcCc-cccc-CCcHHHHHHHHHHH-hCCCCEEEEEe
Confidence 455555443 3336677666776 8888 67888999998864 453 4455544
No 305
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.27 E-value=1.6e+02 Score=20.59 Aligned_cols=73 Identities=10% Similarity=0.075 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEE
Q psy4634 43 EFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIII 121 (249)
Q Consensus 43 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~Tiii 121 (249)
.....+...++..|.. +...+.|+.- +...--.+|+++|+|--..+.|- ..+.+.|++.. ..+..||+
T Consensus 17 ~~~~~l~~~l~~~g~~-----v~~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 17 DIARLLNLMLEKGGFD-----SDMVHSAAQA---LEQVARRPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp HHHHHHHHHHHHTTCE-----EEEECSHHHH---HHHHHHSCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEE
T ss_pred HHHHHHHHHHHHCCCe-----EEEECCHHHH---HHHHHhCCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEE
Confidence 3345556666654432 2333344321 22223478999999988777774 33444454421 12455666
Q ss_pred EecCh
Q psy4634 122 TTHYI 126 (249)
Q Consensus 122 vtH~l 126 (249)
.|-..
T Consensus 86 ~s~~~ 90 (140)
T 3grc_A 86 VSANA 90 (140)
T ss_dssp ECTTH
T ss_pred EecCC
Confidence 65544
No 306
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=23.25 E-value=2.1e+02 Score=20.40 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=22.6
Q ss_pred cCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 83 HTP-SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 83 ~~P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
.+| +++|+|--..+.|- .++.+.+++.. ....||++|-
T Consensus 46 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 84 (151)
T 3kcn_A 46 SDPFSVIMVDMRMPGMEG---TEVIQKARLIS-PNSVYLMLTG 84 (151)
T ss_dssp SCCCSEEEEESCCSSSCH---HHHHHHHHHHC-SSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCcH---HHHHHHHHhcC-CCcEEEEEEC
Confidence 466 99999987777664 23444555532 3444544443
No 307
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.23 E-value=1.5e+02 Score=23.82 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCcEEEEEecChhHH
Q psy4634 76 SIAVTLLHTPSLVILDEP----------TSGLDPMLAHYFWQYLQRMS----SNGQTIIITTHYIEEA 129 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~TiiivtH~l~~~ 129 (249)
.+..|-...|.++++||- .++-.......+..++..+. ..+..+|.+|+..+.+
T Consensus 96 ~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp HHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 344455567889999996 11112222233444554442 2356788888887644
No 308
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.09 E-value=1.6e+02 Score=20.73 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=23.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
-..|+++|+|--..+.|- ..+.+.|++. .....||++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~~-~~~~~ii~ls~ 84 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSG---EDVLDWINQN-DIPTSVIIATA 84 (137)
T ss_dssp HHCCSEEEECSBCSSSBH---HHHHHHHHHT-TCCCEEEEEES
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhc-CCCCCEEEEEe
Confidence 358999999987766663 2344445442 22444555543
No 309
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.95 E-value=2e+02 Score=22.21 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy4634 44 FRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123 (249)
Q Consensus 44 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiivt 123 (249)
....+...++..|.. +...+.|+.- +...--..|+++|+|--..+.|-. ++.+.+++....-..|++++
T Consensus 19 ~~~~l~~~L~~~g~~-----v~~~~~~~~a---~~~~~~~~~dlvllD~~l~~~~g~---~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 19 VLASLERGLRLSGFE-----VATAVDGAEA---LRSATENRPDAIVLDINMPVLDGV---SVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp HHHHHHHHHHHTTCE-----EEEESSHHHH---HHHHHHSCCSEEEEESSCSSSCHH---HHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHHHHHhCCCE-----EEEECCHHHH---HHHHHhCCCCEEEEeCCCCCCCHH---HHHHHHHhcCCCCCEEEEEc
Confidence 344555666654431 2334444432 222234689999999877776642 34445554322223445555
Q ss_pred cC
Q psy4634 124 HY 125 (249)
Q Consensus 124 H~ 125 (249)
|.
T Consensus 88 ~~ 89 (233)
T 1ys7_A 88 RS 89 (233)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 310
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=22.91 E-value=1.8e+02 Score=19.60 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=23.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
-.+|+++++|--..+.|-. .+.+.+++ . ....+|++|.
T Consensus 44 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~-~-~~~~ii~~s~ 81 (122)
T 1zgz_A 44 NQSVDLILLDINLPDENGL---MLTRALRE-R-STVGIILVTG 81 (122)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHT-T-CCCEEEEEES
T ss_pred cCCCCEEEEeCCCCCCChH---HHHHHHHh-c-CCCCEEEEEC
Confidence 3679999999877777642 34444444 2 3445555443
No 311
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=22.76 E-value=80 Score=23.49 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 67 LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+.++--=.+-+..|..+.+++++.+|...+.......+.+.+.... .+..+|++.+.+
T Consensus 59 ~~~~~l~~~~~s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~-~~~~lvi~~~kl 117 (140)
T 1jql_B 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNKL 117 (140)
T ss_dssp CCHHHHHHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC-SSCCEEEECSSC
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC-CCEEEEEEeCCc
Confidence 33443333333344567889999999988776556666766666532 344444444444
No 312
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=22.45 E-value=1.1e+02 Score=28.71 Aligned_cols=48 Identities=13% Similarity=0.315 Sum_probs=35.4
Q ss_pred hcCCCEEEEeCCC-------------CCCCH------HHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 82 LHTPSLVILDEPT-------------SGLDP------MLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 82 ~~~P~iLlLDEPt-------------sgLD~------~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+.||+|+++|-|. +..+- ..++.+.+.++++.+.|..++++.-.++..
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dl 302 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDL 302 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHH
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHH
Confidence 7899999999983 22221 123456778888887799999999888754
No 313
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.41 E-value=1.8e+02 Score=19.91 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=24.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEecC
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTHY 125 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~TiiivtH~ 125 (249)
-.+|+++|+|--..+.|- ..+.+.|++... ....|+++|..
T Consensus 48 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~~~~ 89 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDG---LDVIRSLRQNKVANQPKILVVSGL 89 (132)
T ss_dssp HTCCSEEEEESCBTTBCH---HHHHHHHHTTTCSSCCEEEEECCS
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhcCccCCCeEEEEeCC
Confidence 478999999988777664 234444444221 23455555543
No 314
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=22.16 E-value=1.2e+02 Score=21.83 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=33.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEec
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTH 124 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~TiiivtH 124 (249)
+..+.-+++|-=.+-|++..+..+.++...+.+. +..|.++.|
T Consensus 2 i~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Gh 45 (118)
T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGH 45 (118)
T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 4566778888888999999998888887777654 567888777
No 315
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=22.06 E-value=86 Score=29.51 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=34.8
Q ss_pred CCCEEEEeCCC--------------CCCCH-----HHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 84 TPSLVILDEPT--------------SGLDP-----MLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPt--------------sgLD~-----~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
+|+|+++|-|. +.-|. ..++.+.+.++++.+.|..++++.-+++..
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~ 305 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDL 305 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGG
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHH
Confidence 99999999885 33342 233457888888888899999999988754
No 316
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=22.04 E-value=1.2e+02 Score=25.77 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEEecC
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMS----------SNGQTIIITTHY 125 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~----------~~g~TiiivtH~ 125 (249)
+..+|+|||. ..|++..+..+.+.+.+.. ..+..+|.+|+.
T Consensus 96 ~~g~L~LDEi-~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEI-GDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESC-TTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEecc-ccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 4689999995 4577777777777776532 123567777775
No 317
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=22.02 E-value=1.7e+02 Score=22.43 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=24.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 82 ~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
-.+|+++|+|--..+.|- ..+.+.|++....-..|+++++.-
T Consensus 49 ~~~~dlvllD~~lp~~~g---~~~~~~lr~~~~~~~ii~ls~~~~ 90 (215)
T 1a04_A 49 SLDPDLILLDLNMPGMNG---LETLDKLREKSLSGRIVVFSVSNH 90 (215)
T ss_dssp HHCCSEEEEETTSTTSCH---HHHHHHHHHSCCCSEEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence 358999999987777664 234444444222223455555543
No 318
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.79 E-value=1.2e+02 Score=23.19 Aligned_cols=40 Identities=13% Similarity=-0.026 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCh-hHHh-ccCEEEEEeCCE
Q psy4634 103 HYFWQYLQRMSSNGQTIIITTHYI-EEAR-QANVVGLMRKGV 142 (249)
Q Consensus 103 ~~i~~~L~~l~~~g~TiiivtH~l-~~~~-~~Dri~vl~~G~ 142 (249)
.++.+.++..++.|.++|.+|..- +.+. .||.++.+..+.
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 556777777777788777777654 4554 499888876554
No 319
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=21.78 E-value=1.5e+02 Score=24.96 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCEEEEeCCCCC--------------CCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHhc
Q psy4634 85 PSLVILDEPTSG--------------LDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ 131 (249)
Q Consensus 85 P~iLlLDEPtsg--------------LD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~~ 131 (249)
-+++.+|-|-.. -+.....++.+.++++.++|.-+++|-|+-.+++.
T Consensus 175 ~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~~~~~~lS~~d~~~i~~ 235 (278)
T 2g1p_A 175 SSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTRE 235 (278)
T ss_dssp TEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHH
T ss_pred CCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCHHHHH
Confidence 378899998632 35556778999999988778889999999888753
No 320
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=21.63 E-value=1.4e+02 Score=26.02 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHh---CCcEEEEEecChhHH
Q psy4634 76 SIAVTLLHTPSLVILDEPTSG----------LDPMLAHYFWQYLQRMSS---NGQTIIITTHYIEEA 129 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsg----------LD~~~~~~i~~~L~~l~~---~g~TiiivtH~l~~~ 129 (249)
.+..+-..+|.+|++||--.- ........+...+..+.. ....+|.+|+..+.+
T Consensus 199 ~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 199 LFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp HHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred HHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 344445568899999998321 112223344444444322 234566678876544
No 321
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=21.55 E-value=2e+02 Score=19.70 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=24.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEecCh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-TiiivtH~l 126 (249)
.+|+++++|--..+.|- .++.+.+++...... .|++++|.-
T Consensus 47 ~~~dlvllD~~l~~~~g---~~~~~~l~~~~~~~~~ii~ls~~~~ 88 (130)
T 1dz3_A 47 KRPDILLLDIIMPHLDG---LAVLERIRAGFEHQPNVIMLTAFGQ 88 (130)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHHHCSSCCEEEEEEETTC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCcEEEEecCCC
Confidence 57999999987777664 244555555212233 455666543
No 322
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.42 E-value=73 Score=27.95 Aligned_cols=59 Identities=10% Similarity=-0.052 Sum_probs=37.7
Q ss_pred cCChHHHHHHHHHHHHh--c-CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHHhC-CcEEEEEecCh
Q psy4634 66 TLSGGQVRRVSIAVTLL--H-TPSLVILDEPTSGLDPM-------LAHYFWQYLQRMSSN-GQTIIITTHYI 126 (249)
Q Consensus 66 ~LSgGqkQRv~iArAL~--~-~P~iLlLDEPtsgLD~~-------~~~~i~~~L~~l~~~-g~TiiivtH~l 126 (249)
.+|-. +-.+.+|.+. + +++++++|--..=-.+. ....+.+.|+.++++ +.+||+++|--
T Consensus 137 ~~si~--~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~ 206 (338)
T 4a1f_A 137 YVRIE--QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLN 206 (338)
T ss_dssp TCCHH--HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred CCcHH--HHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecC
Confidence 45544 3334555554 3 68999999654322222 134567778888776 99999999953
No 323
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=21.29 E-value=1.4e+02 Score=22.82 Aligned_cols=56 Identities=11% Similarity=-0.052 Sum_probs=33.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh-hHHh-ccCEEEEEeCC
Q psy4634 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI-EEAR-QANVVGLMRKG 141 (249)
Q Consensus 81 L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l-~~~~-~~Dri~vl~~G 141 (249)
.+.+-+++|+= -.+|=. ..+.+.++..+++|.++|.+|... +.+. .||.++.+..|
T Consensus 107 ~~~~~Dvvi~i-S~sG~t----~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 107 LGNEKDVLIGI-STSGKS----PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HCCTTCEEEEE-CSSSCC----HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred hCCCCCEEEEE-eCCCCC----HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 35555665541 233433 345666666666787776666654 4554 49998877654
No 324
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=21.05 E-value=2.8e+02 Score=23.44 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=37.2
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHHh
Q psy4634 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130 (249)
Q Consensus 77 iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~~ 130 (249)
+..|.....+.++|+= +.||+..-+.+.+..++ -|..+++-.|+.++++
T Consensus 135 i~ea~~~GAD~VlLi~--a~L~~~~l~~l~~~a~~---lGl~~lvevh~~eEl~ 183 (272)
T 3tsm_A 135 VYEARSWGADCILIIM--ASVDDDLAKELEDTAFA---LGMDALIEVHDEAEME 183 (272)
T ss_dssp HHHHHHTTCSEEEEET--TTSCHHHHHHHHHHHHH---TTCEEEEEECSHHHHH
T ss_pred HHHHHHcCCCEEEEcc--cccCHHHHHHHHHHHHH---cCCeEEEEeCCHHHHH
Confidence 6677888999999964 47887655555555444 4899999999999874
No 325
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=20.92 E-value=1.2e+02 Score=27.37 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=28.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecChhHH
Q psy4634 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l~~~ 129 (249)
..+++++|-|-+|++.. +.+.++.++. ..++++|++....
T Consensus 353 ~fD~Vv~dPPr~g~~~~----~~~~l~~l~p--~givyvsc~p~tl 392 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPR----LVKRLNREKP--GVIVYVSCNPETF 392 (425)
T ss_dssp TCSEEEECCCTTCSCHH----HHHHHHHHCC--SEEEEEESCHHHH
T ss_pred CCCEEEEcCCccchHHH----HHHHHHhcCC--CcEEEEECChHHH
Confidence 68999999999999864 4444445433 3578888877664
No 326
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=20.90 E-value=2.2e+02 Score=22.62 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q psy4634 43 EFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122 (249)
Q Consensus 43 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~Tiiiv 122 (249)
.....+...++..|.. +...+.|+. ++...--.+|+++|+|=-..+.|- .++.+.|++....-..|+++
T Consensus 34 ~~~~~l~~~L~~~g~~-----v~~~~~~~~---al~~~~~~~~dlvllD~~lp~~~g---~~~~~~lr~~~~~~~ii~lt 102 (250)
T 3r0j_A 34 NIVELLSVSLKFQGFE-----VYTATNGAQ---ALDRARETRPDAVILDVXMPGMDG---FGVLRRLRADGIDAPALFLT 102 (250)
T ss_dssp HHHHHHHHHHHHTTCE-----EEEESSHHH---HHHHHHHHCCSEEEEESCCSSSCH---HHHHHHHHHTTCCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCE-----EEEECCHHH---HHHHHHhCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCCEEEEE
Confidence 3445566666654432 223334432 222223368999999977777663 23444444422222345555
Q ss_pred ecCh
Q psy4634 123 THYI 126 (249)
Q Consensus 123 tH~l 126 (249)
+|.-
T Consensus 103 ~~~~ 106 (250)
T 3r0j_A 103 ARDS 106 (250)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 5553
No 327
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=20.87 E-value=1.4e+02 Score=23.04 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=24.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~ 125 (249)
.+|+++|+|--..+.|- .++.+.+++....-..|+++++.
T Consensus 42 ~~~dlvllD~~lp~~~g---~~~~~~lr~~~~~~~ii~lt~~~ 81 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSG---YEICRMIKETRPETWVILLTLLS 81 (220)
T ss_dssp SCCSEEEEESBCSSSBH---HHHHHHHHHHCTTSEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCCCcEEEEEcCC
Confidence 89999999987766664 24555555532223344555544
No 328
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.83 E-value=1.6e+02 Score=20.58 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=24.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEecCh
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMS--SNGQTIIITTHYI 126 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~TiiivtH~l 126 (249)
..|+++|+|--..+.|- .++.+.|++.. ..-..|+++++.-
T Consensus 61 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG---REVLQEIKQDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHTTSTTGGGSCEEEEESCCC
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhCcccCCCeEEEEeCCCC
Confidence 68999999988777764 23444444422 1223555665543
No 329
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=20.77 E-value=1.3e+02 Score=21.01 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=34.1
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy4634 84 TPSLVILD-EPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124 (249)
Q Consensus 84 ~P~iLlLD-EPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH 124 (249)
.++-+++| ...+.+|......+.++.+++.++|..+.++.-
T Consensus 41 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 82 (117)
T 1h4x_A 41 AVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNP 82 (117)
T ss_dssp SCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESC
T ss_pred CCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 56788899 778889999999999999998777888877654
No 330
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.43 E-value=1.2e+02 Score=21.41 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=19.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC-cEEEEEecC
Q psy4634 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NG-QTIIITTHY 125 (249)
Q Consensus 83 ~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g-~TiiivtH~ 125 (249)
.+|+++|+|-...+.|- ..+.+.|++... .+ ..|+++++.
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 45 HHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp HCCSEEEEETTC---------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHcCcccCCCCEEEEecCC
Confidence 58999999976655442 234444544321 23 345555554
No 331
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=20.41 E-value=91 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHh-CCcEEEEEecCh
Q psy4634 103 HYFWQYLQRMSS-NGQTIIITTHYI 126 (249)
Q Consensus 103 ~~i~~~L~~l~~-~g~TiiivtH~l 126 (249)
..+.+.+.++.+ .+.+|++|||..
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~ 110 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLP 110 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTT
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHH
Confidence 456666766643 578999999975
No 332
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.34 E-value=1.7e+02 Score=20.34 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEE
Q psy4634 43 EFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIII 121 (249)
Q Consensus 43 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQRv~iArAL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~Tiii 121 (249)
...+.+...++..|.. +...+.++. ++...--..|+++|+|--..+.|-. .+.+.+++... ....||+
T Consensus 18 ~~~~~l~~~L~~~g~~-----v~~~~~~~~---a~~~l~~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFH-----IISADSGGQ---CIDLLKKGFSGVVLLDIMMPGMDGW---DTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp HHHHHHHHHHHHTTCE-----EEEESSHHH---HHHHHHTCCCEEEEEESCCSSSCHH---HHHHHHHHTTCCTTEEEEE
T ss_pred HHHHHHHHHHHHCCeE-----EEEeCCHHH---HHHHHHhcCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCCEEE
Confidence 3445556666655432 333344432 1222223679999999877766632 34444544111 2445555
Q ss_pred EecC
Q psy4634 122 TTHY 125 (249)
Q Consensus 122 vtH~ 125 (249)
.|..
T Consensus 87 ~s~~ 90 (142)
T 3cg4_A 87 LTAK 90 (142)
T ss_dssp EECT
T ss_pred EECC
Confidence 5443
No 333
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=20.20 E-value=1.5e+02 Score=26.56 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=32.0
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 86 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.+|+-|+-+..-|+..+..+.+++....+.|..|.++|.+-
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~ 350 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLH 350 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred EEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCCC
Confidence 58999999888899999998877777666677776666543
No 334
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=20.13 E-value=79 Score=25.08 Aligned_cols=24 Identities=4% Similarity=-0.040 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHh--CCcEEEEEecCh
Q psy4634 103 HYFWQYLQRMSS--NGQTIIITTHYI 126 (249)
Q Consensus 103 ~~i~~~L~~l~~--~g~TiiivtH~l 126 (249)
..+.+.+.++.+ .+.+|++|||..
T Consensus 129 ~R~~~~l~~l~~~~~~~~vlvVsHg~ 154 (208)
T 2a6p_A 129 DRADSAVALALEHMSSRDVLFVSHGH 154 (208)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEEECHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCHH
Confidence 445666666643 478999999964
No 335
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=20.13 E-value=2.1e+02 Score=24.13 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCEEEEeCCCCCC----------CHHHHHHHHHHHHHHHh-C-CcEEEEEecChhHH----h-ccCEEEEE
Q psy4634 76 SIAVTLLHTPSLVILDEPTSGL----------DPMLAHYFWQYLQRMSS-N-GQTIIITTHYIEEA----R-QANVVGLM 138 (249)
Q Consensus 76 ~iArAL~~~P~iLlLDEPtsgL----------D~~~~~~i~~~L~~l~~-~-g~TiiivtH~l~~~----~-~~Dri~vl 138 (249)
.+..|-..+|.+|++||--+-. .......+...+..+.. . +..||.+|+..+.+ . .+++.+.+
T Consensus 102 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~ 181 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 181 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEEC
T ss_pred HHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEe
Confidence 4455556789999999964221 12223444444444422 2 45566678875443 2 26665544
No 336
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=20.08 E-value=99 Score=26.36 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=27.1
Q ss_pred CCCEEEEeCCCCCCC-----HH---------------HHHHHHHHHHHHHhCCcEEEEEecCh
Q psy4634 84 TPSLVILDEPTSGLD-----PM---------------LAHYFWQYLQRMSSNGQTIIITTHYI 126 (249)
Q Consensus 84 ~P~iLlLDEPtsgLD-----~~---------------~~~~i~~~L~~l~~~g~TiiivtH~l 126 (249)
.-+++++|-|.+|+. |. .+..+++.+.++.+.|..++++|+.+
T Consensus 187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 458999999988754 21 11344444444445577888888755
Done!