RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4634
(249 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 164 bits (417), Expect = 1e-49
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 3/162 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
IG++PQE +L+ E T+ E +F+A LY +S EE +++EL E+ L ++ TLSG
Sbjct: 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSG 139
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHYIEE 128
G +R+SIA+ LLH P L+ILDEPTSGLDP W+ L+ ++ G TI+++TH +EE
Sbjct: 140 GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE 199
Query: 129 A-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLC 169
A + V ++ G ++AE +PEEL +G + E+
Sbjct: 200 AEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERL 241
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 126 bits (319), Expect = 7e-36
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
+G+ PQ ALFDE T+ E +FYA L + E + +++ L VL L ++ TLS
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLS 135
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
GG R++S+A+ L+ PS+++LDEPTSGLDP W + + ++II+TTH ++E
Sbjct: 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG-RSIILTTHSMDE 194
Query: 129 A-RQANVVGLMRKGVLLAEKSPEEL 152
A + + +M G L SP+EL
Sbjct: 195 AEALCDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 125 bits (316), Expect = 1e-34
Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-PPDHRTCSTLSG 69
IG +PQ ++ ++ T E + LY + +E + +EL E+ +L R T SG
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSG 127
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G RR+ IA +L+H P ++ LDEPT+GLDP W Y++ + G TI++TTHY+EEA
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEA 187
Query: 130 RQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEV 164
+ + + ++ G ++AE +PEEL G D+LE
Sbjct: 188 DKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESR 223
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 120 bits (302), Expect = 2e-33
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-PPDHRTCSTLSG 69
IG + Q+ ++ DE T E +A LY + E R ++ EL + + L R T SG
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSG 134
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE 128
G RR+ IA +L+H P ++ LDEPT GLDP + W+Y++++ G TI++TTHY+EE
Sbjct: 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEEL 152
A Q + V ++ G ++AE +PEEL
Sbjct: 195 AEQLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 110 bits (277), Expect = 4e-30
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 36/134 (26%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
IG++P+E +L++ T+ E + LSGG
Sbjct: 75 IGYLPEEPSLYENLTVRENLK-----------------------------------LSGG 99
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA- 129
+R+++A LLH P L+ILDEPTSGLDP FW+ L+ + G+TI++++H +EEA
Sbjct: 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159
Query: 130 RQANVVGLMRKGVL 143
R + V ++ G +
Sbjct: 160 RLCDRVAILNNGRI 173
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 104 bits (262), Expect = 3e-27
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IG + E L+ T E +++A L +S +E +A++ EL + L L R S
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFST 136
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G ++V+IA L+H PS+++LDEPTSGLD F +++++ + G+ +I ++H ++E
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196
Query: 130 RQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCH 170
+ V ++ KG ++ E S E L A + +LEE+F
Sbjct: 197 EALCDRVIVLHKGEVVLEGSIEALDARTVLRNLEEIFAFALK 238
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 106 bits (265), Expect = 6e-27
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 4/146 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEV--LDLPPDHRTCSTLS 68
IG +PQ L EFT+ E + + +S+ E A + L E L+ D R S LS
Sbjct: 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARV-SDLS 174
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
GG RR+++A L++ P L+ILDEPT+GLDP H W+ L+ + + G+TI++TTH++EE
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 234
Query: 129 A-RQANVVGLMRKGVLLAEKSPEELI 153
A R + + ++ G +AE P LI
Sbjct: 235 AERLCDRLCVLEAGRKIAEGRPHALI 260
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 104 bits (262), Expect = 8e-27
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEV--LDLPPDHRTCSTLS 68
+G +PQ L +FT+ E + + +S+ RA + L E L+ D + LS
Sbjct: 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV-GELS 140
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
GG RR+++A L++ P +++LDEPT+GLDP H W+ L+ + + G+TI++TTH++EE
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200
Query: 129 A-RQANVVGLMRKGVLLAEKSPEELIAS-YGVDSLE 162
A R + + ++ +G +AE +P LI S G D +E
Sbjct: 201 AERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIE 236
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 100 bits (252), Expect = 4e-26
Identities = 43/139 (30%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLS 68
+GF+ T L+D T E +++A LY + +E A+++EL + L + D R S
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV-GGFS 138
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
G ++V+IA L+H P +++LDEPT+GLD M ++++++ + G+ I+ +TH ++E
Sbjct: 139 TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198
Query: 129 A-RQANVVGLMRKGVLLAE 146
R + V ++ +G ++ E
Sbjct: 199 VERLCDRVVVLHRGRVVYE 217
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 100 bits (251), Expect = 6e-26
Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 3/138 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IG++PQE ++ FT+ E + A L I S+E +A++ E+ E+++L + +LSG
Sbjct: 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSG 133
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE- 128
G RRV IA L+ PS++I+DEPT+GLDP F L + + + +I++TH +E+
Sbjct: 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED-RIVILSTHIVEDV 192
Query: 129 ARQANVVGLMRKGVLLAE 146
N V ++ KG L+ E
Sbjct: 193 ESLCNQVAVLNKGKLVFE 210
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 99.2 bits (247), Expect = 9e-25
Identities = 55/150 (36%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 6 LGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRT-C 64
L IG +PQ L EFT+ E + + +S+ E A + L E L
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRV 133
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGG RR+++A L++ P L+ILDEPT+GLDP H W+ L+ + + G+TI++TTH
Sbjct: 134 ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
Query: 125 YIEEA-RQANVVGLMRKGVLLAEKSPEELI 153
++EEA R + + ++ G +AE P LI
Sbjct: 194 FMEEAERLCDRLCVLESGRKIAEGRPHALI 223
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 95.1 bits (237), Expect = 1e-23
Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 2/160 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
+G + Q+ L + ++ + +++A+L+ +S E RA++ EL L L L+G
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAERADDKVRELNG 135
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIEE 128
G RRV IA LLH P+L++LDEPT GLDP +++ ++ G +++ TH ++E
Sbjct: 136 GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDE 195
Query: 129 ARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
+ + ++ +G +LA+ + EL + G LE FL L
Sbjct: 196 IEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAFLAL 235
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 93.7 bits (234), Expect = 3e-23
Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 3/141 (2%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTL 67
IGF+ Q L + T+ E + + S+ + +EL EVL L + S L
Sbjct: 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYI 126
SGGQ +RV+IA L++ P +++ DEPT LD A + L+ ++ G+TII+ TH
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203
Query: 127 EEARQANVVGLMRKGVLLAEK 147
E A+ A+ V ++ G + E+
Sbjct: 204 ELAKYADRVIELKDGKIEEEE 224
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 93.0 bits (232), Expect = 4e-23
Identities = 51/138 (36%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
IG + Q+ ALF T+AE F L + E RA+++EL E++ L +R LSG
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSG 133
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV++A L PSL++LDEP S LD L + L+ + G T I TH EE
Sbjct: 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE 193
Query: 129 A-RQANVVGLMRKGVLLA 145
A A+ + +M +G ++
Sbjct: 194 ALALADRIAVMNEGRIVQ 211
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 92.6 bits (231), Expect = 4e-23
Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 28/115 (24%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSG 69
IG++PQ+ L T+ ET F A L LSG
Sbjct: 83 IIGYVPQDDILHPTLTVRETLMFAAKL----------------------------RGLSG 114
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
G+ +RVSIA+ L+ PSL+ LDEPTSGLD A L+R++ G+TII + H
Sbjct: 115 GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 91.9 bits (229), Expect = 1e-22
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQFYA--SLYRISSEEFRAKMKE---LQEVLDLPPDHRTCS 65
+ ++ Q+ L T+ ET + A L R SS+ R K E L+++
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK 142
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+SGG+ RRVSIAV LL P ++ILDEPTSGLD A L +++ + +I+T H
Sbjct: 143 GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 91.4 bits (228), Expect = 1e-22
Identities = 38/105 (36%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 39 ISSEEFRAKMKE-LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
+ EE +++E L+ V R+ TLSGGQ +RV+IA L P +++LDEPT+GL
Sbjct: 106 LPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165
Query: 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKG 141
DP + L+++ + G+TIII TH ++ + A+ V ++ G
Sbjct: 166 DPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 92.0 bits (229), Expect = 2e-22
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTL 67
IG++ Q+ LF T+ E L + E+ R + EL ++ L P R L
Sbjct: 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHEL 136
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYI 126
SGGQ +RV +A L P L+++DEP LDP+ + +R+ G+TI+ TH I
Sbjct: 137 SGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI 196
Query: 127 EEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
+EA R A+ + +M+ G ++ +P+E++ S D + E
Sbjct: 197 DEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFV 236
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 89.2 bits (222), Expect = 3e-22
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +RV++A LL P L++LDEPTSGLDP + L+ ++ G+T+II TH
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 127 EEARQA-NVVGLMRKG 141
E A A + V +++ G
Sbjct: 141 ELAELAADRVIVLKDG 156
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 89.6 bits (223), Expect = 8e-22
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IG++P+E L+ + + + + A L + EE R ++ E E L+L ++ LS
Sbjct: 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G ++V ++H P L+ILDEP SGLDP+ ++ ++ G+T+I++TH +E
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELV 191
Query: 130 -RQANVVGLMRKGV 142
+ V L+ KG
Sbjct: 192 EELCDRVLLLNKGR 205
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 90.0 bits (224), Expect = 3e-21
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD---HRTCSTL 67
IG++ Q+ LF T+AE L E + + EL +++ L P R L
Sbjct: 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYI 126
SGGQ +RV +A L P ++++DEP LDP+ + ++ + G+TI+ TH I
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196
Query: 127 EEA-RQANVVGLMRKGVLLAEKSPEELIAS 155
+EA + A+ + +M G ++ +P+E++A+
Sbjct: 197 DEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 88.1 bits (219), Expect = 4e-21
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 6/152 (3%)
Query: 10 YIGFMPQ--ETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCST 66
+G + Q + LF T+ + F + EE ++ E E++ L R
Sbjct: 80 KVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFN 138
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTHY 125
LSGGQ +RV+IA L P +++LDEPT+GLDP + L++ G+TIII TH
Sbjct: 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEELIASY 156
+E + A+ V ++ G +LA+ P E+
Sbjct: 199 LELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 86.4 bits (215), Expect = 2e-20
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLY---RISSEEFRAKMKELQEVLDLPPD-HRTCST 66
+G + Q ALFD T+ E F L R+S EE R + E E + L +
Sbjct: 79 MGMLFQSGALFDSLTVFENVAFP--LREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAE 136
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHY 125
LSGG +RV++A L P L++ DEPT+GLDP+ + ++ + G T I+ TH
Sbjct: 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
++ A A+ + ++ G ++AE +PEEL AS
Sbjct: 197 LDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 85.6 bits (213), Expect = 3e-20
Identities = 43/136 (31%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
+IGF+ Q L + T E + L + +E R + +EL E + L + S LS
Sbjct: 83 HIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELS 142
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
GGQ +RV+IA L + P +++ DEPT LD + L+ ++ G TI++ TH E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
Query: 128 EARQANVVGLMRKGVL 143
A A+ + +R G +
Sbjct: 203 LAEYADRIIELRDGKI 218
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 86.5 bits (215), Expect = 3e-20
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEF---RAKMKELQEVLDLPPD--HRTCS 65
+G + Q+ ALF T+ E F + E MK L+ V L S
Sbjct: 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMK-LELV-GLRGAAADLYPS 144
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTH 124
LSGG +RV++A + P L+ LDEPTSGLDP+ A + ++ + + G T+I+ TH
Sbjct: 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204
Query: 125 YIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
++ A+ V ++ G ++AE +PEEL+AS
Sbjct: 205 DLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 87.0 bits (216), Expect = 3e-20
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 11/151 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS--TLS 68
I F E LF+E T+ + F + +S E+ + K +E+ E++ LP + S LS
Sbjct: 89 IVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQTIIITTH 124
GGQ+RRV+IA L P +++LDEPT+GLDP + F++ + G T ++ TH
Sbjct: 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE---KGLTTVLVTH 204
Query: 125 YIEE-ARQANVVGLMRKGVLLAEKSPEELIA 154
+E+ AR A+ + +M KG + + +P E+ A
Sbjct: 205 SMEDAARYADQIVVMHKGTVFLQGTPREIFA 235
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 86.1 bits (214), Expect = 3e-20
Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 10/162 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQF----YASLYRISSEEFRAKMKELQEVLDLPP-DHRTCS 65
+ ++PQ + T+ E + L+ S+E ++E E+L L R
Sbjct: 78 LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD 137
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTH 124
LSGG+ +RV IA L +++LDEPTS LD + L+ G T+++ H
Sbjct: 138 ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197
Query: 125 YIEEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
+ A R A+ + L++ G ++A+ +PEE++ ++L EV+
Sbjct: 198 DLNLAARYADHLILLKDGKIVAQGTPEEVLTE---ENLREVY 236
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 85.4 bits (212), Expect = 2e-19
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
I + Q AL+ T+ E F L + E ++KE+ ++L L +R LSG
Sbjct: 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSG 136
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ---YLQRMSSN-GQTIIITTHY 125
GQ +RV++A L+ P + +LDEP S LD A ++++ G T I TH
Sbjct: 137 GQRQRVALARALVRKPKVFLLDEPLSNLD---AKLRVLMRSEIKKLHERLGTTTIYVTHD 193
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
EA A+ + +M G + +P EL
Sbjct: 194 QVEAMTLADRIVVMNDGRIQQVGTPLEL 221
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 83.4 bits (207), Expect = 2e-19
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IG++PQE ++F + T+ E + +S +E K++EL E + S+LSG
Sbjct: 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSG 136
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G+ RRV IA L P ++LDEP +G+DP+ + ++ + G ++IT H + E
Sbjct: 137 GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRET 196
Query: 130 RQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158
+ ++ +G +LAE +PEE+ A+ V
Sbjct: 197 LSITDRAYIIYEGKVLAEGTPEEIAANELV 226
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 82.0 bits (203), Expect = 6e-19
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTL 67
IG + Q+ ALF + E F L R + E R + EL ++L L DH R + L
Sbjct: 77 IGLVFQQYALFPHLNVRENLAF--GLKRKRNREDRISVDELLDLLGL--DHLLNRYPAQL 132
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYI 126
SGG+ +RV++A L P L++LDEP S LD L L+++ N +I TH +
Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192
Query: 127 EEA-RQANVVGLMRKGVLLA 145
EA A+ + +M G L
Sbjct: 193 SEAEYLADRIVVMEDGRLQY 212
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 82.8 bits (205), Expect = 9e-19
Identities = 51/137 (37%), Positives = 80/137 (58%), Gaps = 14/137 (10%)
Query: 39 ISSEEFRAKMKE-LQEV-----LDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDE 92
+S EE ++KE L+ V + PP H LSGGQ +RV+IA L P +++LDE
Sbjct: 109 LSKEEVEKRVKEALKAVGMEGFENKPPHH-----LSGGQKKRVAIAGILAMKPEIIVLDE 163
Query: 93 PTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEE 151
PTSGLDPM A + L ++ G TIII+TH ++ A+ V +M G ++ E +P+E
Sbjct: 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223
Query: 152 LIASYGVDSLEEVFLRL 168
+ + ++++ + LRL
Sbjct: 224 VFSD--IETIRKANLRL 238
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 81.2 bits (201), Expect = 1e-18
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTL 67
I ++PQ ALF T+ + + ++ +E K+ E+ E+L + DH R TL
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI--DHLLNRKPETL 130
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYI 126
SGG+ +RV+IA L+ P +++LDEP S LD + L+++ G T++ TH
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190
Query: 127 EEARQ-ANVVGLMRKGVLLAEKSPEELI 153
EEA A+ V +M G L+ PEE+
Sbjct: 191 EEAWALADKVAIMLNGKLIQVGKPEEVF 218
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 82.4 bits (204), Expect = 1e-18
Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRT--CSTLS 68
IG++P+E L+ + T+ + ++ A L + E + K++ E L++ +T LS
Sbjct: 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELS 132
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
G +++ ++H P L+ILDEP SGLDP+ + + G TII ++H +E
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192
Query: 129 A-RQANVVGLMRKGVLLAEKSPEELIASYG 157
+ + +++KG + + E++ S+G
Sbjct: 193 VEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 81.7 bits (202), Expect = 2e-18
Identities = 49/152 (32%), Positives = 89/152 (58%), Gaps = 15/152 (9%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
IG++P+ L+ + + E QF A +Y + + + +++E+ E++ L P+ H+ LS
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSK 136
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQ-----RMSSNGQTIIITTH 124
G +RV +A L+H P ++ILDEPT+GLDP Q ++ + +TII++TH
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPN------QLVEIRNVIKNIGKDKTIILSTH 190
Query: 125 YIEEARQA--NVVGLMRKGVLLAEKSPEELIA 154
++E +A + V ++ KG ++A+K +EL A
Sbjct: 191 IMQEV-EAICDRVIIINKGKIVADKKLDELSA 221
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 79.8 bits (198), Expect = 4e-18
Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-----HRTCS 65
IG++P+ +F E T+ E A Y + +A L+ V +L P +
Sbjct: 77 IGYVPEGRRIFPELTVEENLLLGA--YARRRAKRKA---RLERVYELFPRLKERRKQLAG 131
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
TLSGG+ + ++IA L+ P L++LDEP+ GL P + ++ ++ + G TI++
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN 191
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154
A + A+ ++ +G ++ E + EL+A
Sbjct: 192 ARFALEIADRAYVLERGRVVLEGTAAELLA 221
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 82.8 bits (204), Expect = 6e-18
Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHR---TCSTL 67
+G PQ LF T+AE FYA L S EE + +M+ + E D H+ L
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLE--DTGLHHKRNEEAQDL 1062
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
SGG R++S+A+ + +V+LDEPTSG+DP W L + S G+TII++TH+++
Sbjct: 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMD 1121
Query: 128 EAR-QANVVGLMRKGVLLAEKSPEELIASYG 157
EA + + ++ +G L +P L +G
Sbjct: 1122 EADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152
Score = 72.0 bits (176), Expect = 2e-14
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEF-RAKMKELQEV-LDLPPDHRTCSTLS 68
+G+ PQ A+ D T E YA L + +EE + +Q + L L D R T S
Sbjct: 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-RLAGTYS 2072
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
GG R++S A+ L+ P LV+LDEPT+G+DP W + + G+ +++T+H +EE
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157
+ +M KG + + L + +G
Sbjct: 2133 CEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 78.5 bits (194), Expect = 1e-17
Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 11 IGF-MPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
IG Q+T L+ + + ++F A++Y + F+ ++ EL E+LDL LS
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLS 155
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
GQ R IA LLH P ++ LDEPT GLD + +L+ + G T+++T+HY++
Sbjct: 156 LGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215
Query: 128 E-ARQANVVGLMRKGVLLAE 146
+ A V ++ KG LL +
Sbjct: 216 DIEALARRVLVIDKGRLLYD 235
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 76.3 bits (189), Expect = 3e-17
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA LL P ++ILDE TS LDP + L+ + + G+T+I+ H +
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRL 155
Query: 127 EEARQANVVGLMRKG 141
R A+ + ++ G
Sbjct: 156 STIRDADRIIVLDDG 170
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 76.9 bits (190), Expect = 4e-17
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 12/141 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL----PPDHRTCST 66
IG + + + T E + A L I K + EVLD+ +
Sbjct: 74 IGALIEAPGFYPNLTARENLRLLARLLGIRK-------KRIDEVLDVVGLKDSAKKKVKG 126
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
S G +R+ IA+ LL P L+ILDEPT+GLDP + + + G T++I++H +
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186
Query: 127 EEARQ-ANVVGLMRKGVLLAE 146
E ++ A+ +G++ KG L+ E
Sbjct: 187 SEIQKVADRIGIINKGKLIEE 207
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 79.1 bits (195), Expect = 4e-17
Identities = 45/158 (28%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IG + Q+ ALF TI + L +E + K EL +++ L +HR LSG
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSG 132
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
G +RV +A L P ++++DE S LDP++ L+++ + +TI+ TH ++E
Sbjct: 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE 192
Query: 129 A-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
A R + + +M+ G ++ +P+E++ + + +EE
Sbjct: 193 AIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 76.8 bits (190), Expect = 6e-17
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 38 RISSEEFRAKMKELQEVLDLPPDHRTC--STLSGGQVRRVSIAVTLLHTPSLVILDEPTS 95
++S E R K EL E + L D + LSGGQ +RV+IA L P +++ DEPTS
Sbjct: 107 KLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTS 165
Query: 96 GLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154
LDP L ++ ++ G T+II TH + AR+ A+ V M +G ++ E PEE
Sbjct: 166 ALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225
Query: 155 S 155
+
Sbjct: 226 N 226
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 77.8 bits (192), Expect = 8e-17
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 14 MPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRT-CSTLSGGQV 72
M Q+ L+ + ++ + +Y I +EF ++ L E+LDL + LS GQ
Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162
Query: 73 RRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQTIIITTHYIEE 128
R +A LLH P ++ LDEPT GLD + + +Y + T+++TTH ++
Sbjct: 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE---RQATVLLTTHIFDD 219
Query: 129 -ARQANVVGLMRKGVLLAEKSPEELIASYG 157
A + V L+ +G L+ + + +L +G
Sbjct: 220 IATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 78.4 bits (194), Expect = 1e-16
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 11 IGFMPQE--TALFDEFTI----AETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC 64
I + Q+ T+L TI E + + + S E R + EL E + LP R
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREALRLH---GKGSRAEARKRAVELLEQVGLPDPERRD 149
Query: 65 ST---LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTII 120
LSGG +RV IA+ L P L+I DEPT+ LD L+ + G ++
Sbjct: 150 RYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVL 209
Query: 121 ITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
TH + + A+ V +M KG ++ EE++++
Sbjct: 210 FITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
Score = 68.4 bits (168), Expect = 3e-13
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 20/158 (12%)
Query: 10 YIGFMPQETALFD-----EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH--R 62
+ F ++L + +AE + + S E RA++ EL E++ LPP+ R
Sbjct: 370 QMVFQDPYSSL-NPRMTVGDILAEPLRIHG---GGSGAERRARVAELLELVGLPPEFLDR 425
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNGQT 118
LSGGQ +RV+IA L P L+ILDEP S LD + + + + G T
Sbjct: 426 YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL---GLT 482
Query: 119 IIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
+ +H + R A+ V +M G ++ E+ P E +
Sbjct: 483 YLFISHDLAVVRYIADRVAVMYDGRIV-EEGPTEKVFE 519
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 75.2 bits (186), Expect = 2e-16
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
G++ Q+ AL T+ + L + E R + +EL E++ L ++ LSG
Sbjct: 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSG 134
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE 128
G +RV++A L P +++LDEP S LD + + L + G+T+++ TH I+E
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194
Query: 129 A 129
A
Sbjct: 195 A 195
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 75.5 bits (186), Expect = 2e-16
Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 4/159 (2%)
Query: 12 GFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
G + Q+ LF T E F R S EE + +EL + L H S LSG
Sbjct: 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSG 139
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
GQ +RV+IA L P L++ DEPTS LDP L H + +Q ++ G T++I TH I A
Sbjct: 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199
Query: 130 RQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLR 167
+ A+ + + KG + + P+ LI + L+E FL+
Sbjct: 200 EKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQE-FLQ 237
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 77.4 bits (191), Expect = 3e-16
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 16/126 (12%)
Query: 12 GFMPQETALFDEFTIAETFQFYASLY---RISSEEFRAKMKELQEVLDL----------P 58
++ Q+ T+ E F A L R++ +E R ++ E+ + L L P
Sbjct: 102 AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVP 161
Query: 59 PDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT 118
+ LSGG+ +R++ A LL P L+ DEPTSGLD +A+ Q L+ ++ G+T
Sbjct: 162 GRVKG---LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKT 218
Query: 119 IIITTH 124
II T H
Sbjct: 219 IICTIH 224
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 74.9 bits (185), Expect = 4e-16
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IG++ QE AL T+ + L S E R + KEL E++ L + + LSG
Sbjct: 74 IGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSG 133
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE 128
G +RV+IA L P L++LDEP LD + L R+ +T+++ TH ++E
Sbjct: 134 GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE 193
Query: 129 A 129
A
Sbjct: 194 A 194
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 73.6 bits (181), Expect = 5e-16
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 39 ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
+S E +++E + R LSGG+ +RV+IA + P +++LDEPT+GL
Sbjct: 99 LSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158
Query: 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
DP L+R+ + G T++I+TH ++ A
Sbjct: 159 DPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 74.9 bits (184), Expect = 6e-16
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS--TLSGG 70
F E LF+ T+ + +F + S +E + K + + + L D + S LSGG
Sbjct: 91 FQFPEAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGG 149
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-A 129
Q+RRV+IA + + P ++ LDEP +GLDP Q + G T+I+ TH +++ A
Sbjct: 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVA 209
Query: 130 RQANVVGLMRKGVLLAEKSPEELIA 154
A+ V ++ G L+ SP+E+ +
Sbjct: 210 EYADDVLVLEHGKLIKHASPKEIFS 234
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 75.2 bits (185), Expect = 6e-16
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLS 68
+I + Q ALF T+ E F + ++ E + ++ E ++ L R LS
Sbjct: 43 HINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLS 102
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
GGQ +RV++A L+ P +++LDEP S LD L L+ + G T + TH E
Sbjct: 103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
Query: 128 EA-RQANVVGLMRKGVLLAEKSPEEL 152
EA ++ + +MRKG + +PEE+
Sbjct: 163 EAMTMSDRIAIMRKGKIAQIGTPEEI 188
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 73.0 bits (180), Expect = 8e-16
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTL 67
+G++ Q AL + T+ E ++S +E R K KE E + L + L
Sbjct: 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYEL 135
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
SGG+ +RV++A +L P L++ DEPT LDP L ++ G+TIII TH E
Sbjct: 136 SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195
Query: 128 EARQANVV 135
A+QA+ V
Sbjct: 196 VAKQADRV 203
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 74.9 bits (185), Expect = 1e-15
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 14/161 (8%)
Query: 3 ATSLGSTYIGFMPQETALFDEFTIAETFQFY---ASLYRISSEEFRAKMKELQEVLDLPP 59
A LG IG + Q L T+AE + I + RA++KEL E LP
Sbjct: 76 AIRLG---IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV 132
Query: 60 D-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT 118
D + LS G+ +RV I L L+ILDEPT+ L P A ++ L+R+++ G+T
Sbjct: 133 DPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKT 192
Query: 119 IIITTHYIEEARQ-ANVVGLMRKG------VLLAEKSPEEL 152
II TH ++E A+ V ++R+G +AE + EEL
Sbjct: 193 IIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEEL 233
Score = 42.5 bits (101), Expect = 1e-04
Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 11 IGFMPQE---TALFDEFTIAETF-------QFYASLYRISSEEFRAKMKELQEVLDLPPD 60
+ ++P++ L + ++AE + ++ + R +EL E D+
Sbjct: 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV--- 392
Query: 61 HRTCS------TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R S +LSGG +++ +A L P L+I +PT GLD + + L +
Sbjct: 393 -RAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD 451
Query: 115 NGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151
G+ +++ + ++E + ++ + ++ +G ++ PEE
Sbjct: 452 AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 73.0 bits (180), Expect = 2e-15
Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 13/154 (8%)
Query: 11 IGFMPQETALFDEFTIAE--------TFQFYASLYRISSEEFRAKMKELQEVLDLPPDHR 62
IG + Q+ L + ++ E + SL+ + +E + + E + L
Sbjct: 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY 139
Query: 63 T-CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTII 120
LSGGQ +RV+IA L+ P L++ DEP + LDP + L+R++ G T+I
Sbjct: 140 QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVI 199
Query: 121 ITTHYIEEARQ-AN-VVGLMRKGVLLAEKSPEEL 152
++ H ++ AR+ A+ +VGL + G ++ + P EL
Sbjct: 200 VSLHQVDLAREYADRIVGL-KDGRIVFDGPPAEL 232
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 72.5 bits (179), Expect = 2e-15
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC--STLSGGQVRRVSIAVTLLH 83
IAE + + L + E + + L + LP + LSGGQ +RV+IA L
Sbjct: 105 IAEPLRIHGKLSK--KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALAL 162
Query: 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEEARQ-ANVVGLMRKG 141
P L+I DEPTS LD + L+++ G T++ TH + + A+ V +M G
Sbjct: 163 NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAG 222
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 71.9 bits (177), Expect = 2e-15
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS-TLSG 69
IG + Q+ L + T+ E + E + ++ + L LSG
Sbjct: 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSG 140
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G+ +RV+IA ++++P L++ DEPT LDP L+ L+R++ G T+I+ TH +
Sbjct: 141 GEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200
Query: 130 RQ 131
+
Sbjct: 201 DR 202
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 72.9 bits (179), Expect = 3e-15
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 17 ETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD--HRTCSTLSGGQVRR 74
E+ LF+E T+ + F + +S EE A +E ++ + + LSGGQ+RR
Sbjct: 95 ESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRR 153
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-ARQAN 133
V+IA L P +++LDEPT+GLDP +++ +G TI++ TH +++ A A+
Sbjct: 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD 213
Query: 134 VVGLMRKGVLLAEKSPEELIASYGVDSLEEVFL 166
V ++ KG L+ P+++ VD LEE L
Sbjct: 214 FVYVLEKGKLVLSGKPKDIFQD--VDFLEEKQL 244
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 72.7 bits (179), Expect = 3e-15
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 51 LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQ 110
+++ L+ P LSGGQ +RV+IA L P ++ILDE TS LDP + ++
Sbjct: 130 MEDFLNREPHR-----LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVR 184
Query: 111 RMSSNGQ-TIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
++ T++ TH ++EA QA+ V +M KG +L E +PEE+ S
Sbjct: 185 QLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 72.8 bits (178), Expect = 3e-15
Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD--HRTCSTLSGG 70
F E+ LF+E T+ + F + I E+ E E++ L + ++ LSGG
Sbjct: 90 FQFPESQLFEE-TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGG 148
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-A 129
Q+RRV+IA L P +++LDEPT+GLDP Q + + +GQT+++ TH +++ A
Sbjct: 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVA 208
Query: 130 RQANVVGLMRKGVLLAEKSPEEL 152
A+ V L+ KG +++ +P ++
Sbjct: 209 DYADYVYLLEKGHIISCGTPSDV 231
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 73.8 bits (182), Expect = 4e-15
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 18/171 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC--- 64
+G++ Q+ LF +I E + EE A++ E + +LP + T
Sbjct: 549 VGYVLQDPFLFS-GSIRENIALGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R+++A LL P +++LDE TS LDP Q L ++ G+T+II
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIII 664
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQN 173
H + R A+ + ++ +G ++ + S EEL+A G ++ RL QQ
Sbjct: 665 AHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG------LYARLYQQQE 709
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 71.5 bits (176), Expect = 5e-15
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 14/154 (9%)
Query: 11 IGFMPQETALFDEFTIAETF-----QFYASLY-RISSEEFRAKMKELQ--EVLDLPPDHR 62
IG++PQE ++F + T+ + L EE A ++E + D
Sbjct: 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSK---- 136
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+LSGG+ RRV IA L P ++LDEP +G+DP+ + ++ + G ++IT
Sbjct: 137 -AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLIT 195
Query: 123 THYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
H + E + ++ G +LAE SPEE++ +
Sbjct: 196 DHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 71.9 bits (176), Expect = 6e-15
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +RVSIA L P +++ DEPTS LDP L + +Q+++ G+T+++ TH +
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212
Query: 127 EEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
AR ++ V + +G + E +PE+L +
Sbjct: 213 GFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 73.3 bits (181), Expect = 6e-15
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 3 ATSLGSTYIGFMPQETALFDEFTIAE--------TFQF----YASLYRISSEEFRAKMKE 50
A + G I + QE +L ++AE T +F ++ R + R +
Sbjct: 80 ALAAG---IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA----RELLAR 132
Query: 51 LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQ 110
L LD+ PD LS Q + V IA L ++ILDEPT+ L + ++
Sbjct: 133 L--GLDIDPDTL-VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIR 189
Query: 111 RMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVL------LAEKSPEELIA 154
R+ + G II +H ++E + A+ + ++R G + AE S +EL+
Sbjct: 190 RLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVR 240
Score = 55.6 bits (135), Expect = 5e-09
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 11 IGFMP---QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-------PPD 60
I ++P + L + +IAE ASL R S + KE P
Sbjct: 336 IAYVPEDRKSEGLVLDMSIAENITL-ASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 61 HRT-CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHY-FWQYLQRMSSNGQT 118
TLSGG ++V +A L P ++ILDEPT G+D + A ++ ++ +++ G+
Sbjct: 395 PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIYRLIRELAAEGKA 453
Query: 119 IIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
I++ + + E ++ + +MR+G ++ E EE
Sbjct: 454 ILMISSELPELLGLSDRILVMREGRIVGELDREEA 488
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 69.9 bits (172), Expect = 7e-15
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHY 125
LSGGQ +RV++A L P +++LDEPTS LDP+ L+ + + G T+++ TH
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD 160
Query: 126 IEEA-RQANVVGLMRKG 141
++EA R A+ V ++R G
Sbjct: 161 LDEAARLADRVVVLRDG 177
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 72.3 bits (178), Expect = 8e-15
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH--RTCSTLS 68
IG + Q L T+ E F L + E + ++ EL E++ L D R + LS
Sbjct: 85 IGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLS 143
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIE 127
GGQ +RV+IA L + P +++ DE TS LDP + L+ + G TI++ TH +E
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203
Query: 128 EARQ-ANVVGLMRKGVLLAEKSPEELIA 154
++ + V ++ +G L+ E + E+ A
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGTVSEVFA 231
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 72.0 bits (177), Expect = 8e-15
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 17 ETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH--RTCSTLSGGQVRR 74
E LF++ TI + F +S EE + + + E++ L + R+ LSGGQ RR
Sbjct: 115 EYQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRR 173
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
V++A L P ++ DEPT+GLDP + ++ G+TII+ TH
Sbjct: 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 72.7 bits (179), Expect = 1e-14
Identities = 33/95 (34%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGGQ +R+++A LL SL++LDEPT+ LD Q LQ ++ +T+++ TH
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITH 513
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVD 159
+E+A A+ + ++ G L+ + + EEL G+
Sbjct: 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLY 548
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 71.5 bits (176), Expect = 1e-14
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)
Query: 11 IGFMPQE--TALFDEFTIAETFQFYASLYR----ISSEEFRAKMKELQEVLDLPPDHRTC 64
I + Q+ T+L TI + Q L +S +E + + EL E++ +P R
Sbjct: 90 IAMIFQDPMTSLNPVMTIGD--QIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL 147
Query: 65 S----TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTI 119
LSGG +RV IA+ L P L+I DEPT+ LD + L+ + G +
Sbjct: 148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTAL 207
Query: 120 IITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELI 153
I+ TH + + A+ V +M G ++ E EE+
Sbjct: 208 ILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 72.4 bits (178), Expect = 1e-14
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 16/158 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQ---EVLDLPPDHRTC--- 64
I + Q LF T+ + + S EE A ++++ + P T
Sbjct: 414 ISVLTQRVHLFSG-TLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTWLGE 470
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN--GQTII 120
LSGG+ RR+++A LLH L +LDEPT GLDP+ Q L + + G+T++
Sbjct: 471 GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER---QVLALLFEHAEGKTLL 527
Query: 121 ITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
+ TH + + + + ++ G ++ E + EL+A+ G
Sbjct: 528 MVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGR 565
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 70.2 bits (173), Expect = 2e-14
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 16 QETALFDEFTIAE---------TFQFYASLYRISSE-EFRAKMKELQEVLDLPPD-HRTC 64
Q LF E T+ E T E E R + +EL E + L R
Sbjct: 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA 141
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LS GQ RR+ IA L P L++LDEP +GL+P + ++ + G T+++ H
Sbjct: 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEH 201
Query: 125 YIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
++ A+ V ++ +G ++AE +P+E+ +
Sbjct: 202 DMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 69.0 bits (170), Expect = 2e-14
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFW--QYLQRMS-SNGQ 117
R + LSGG+ +RV +A L P +++LDEPTS LD +AH + L+R++ G+
Sbjct: 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLD--IAHQIELLELLRRLARERGK 149
Query: 118 TIIITTHYIEEA-RQANVVGLMRKGVLLAE 146
T+++ H + A R A+ V L++ G ++A+
Sbjct: 150 TVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 69.5 bits (171), Expect = 2e-14
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 5 SLGSTYIGFMPQETALFD-EF--TIAET-----FQFYASLYRISSEEFRAKMKELQEV-- 54
IG++PQ D +F ++ + + R+S + + L+ V
Sbjct: 64 EKERKRIGYVPQ-RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGL 122
Query: 55 LDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
+L R LSGGQ +RV +A L+ P L++LDEP +G+DP ++ L+ +
Sbjct: 123 SEL--ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180
Query: 115 NGQTIIITTH 124
G TI++ TH
Sbjct: 181 EGMTILVVTH 190
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 70.0 bits (172), Expect = 2e-14
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 11 IGFMPQETALFDEFTIAE--------TFQFYASLYRISSEEFRAKMKELQEVLDLPPDHR 62
IG + Q L + T+ E + SL SEE + + E + L
Sbjct: 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY 140
Query: 63 T-CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTII 120
LSGGQ +RV+IA L P L++ DEP + LDP + YL+R++ G T+I
Sbjct: 141 QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVI 200
Query: 121 ITTHYIEEARQ--ANVVGLMRKGVLLAEKSPEEL 152
I H ++ A++ +VGL + G ++ + +P EL
Sbjct: 201 INLHQVDLAKKYADRIVGL-KAGEIVFDGAPSEL 233
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 70.5 bits (173), Expect = 2e-14
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 39 ISSEEFRAKMKE------LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDE 92
I EE R ++ E + E P H LSGGQ +RV+IA L P +I DE
Sbjct: 116 IPPEEIRERVDESLKKVGMYEYRRHAP-H----LLSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 93 PTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEE 151
PT+ LDP ++ ++ G TII+ THY+EEA +A+ + +M G ++ E +P+E
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 152 L 152
+
Sbjct: 231 I 231
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 70.6 bits (173), Expect = 2e-14
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITT 123
+ LSGGQ +RV+IA L P ++ILDE TS LDP + +++ N T+I T
Sbjct: 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEE------LIASYGVD 159
H I+EA A+ V ++ G LLA+ SP E ++ G+D
Sbjct: 202 HDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLD 243
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 69.8 bits (171), Expect = 2e-14
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 14/156 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQFY---ASLYRISSEEFRAKMKELQE-VLDLPPDHRTC-- 64
+G + QE LF+ +I + S+ R+ AK+ + + +LP + T
Sbjct: 78 VGVVLQENVLFNR-SIRDNIALADPGMSMERV---IEAAKLAGAHDFISELPEGYDTIVG 133
Query: 65 ---STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
+ LSGGQ +R++IA L+H P ++I DE TS LD H + + + + G+T+II
Sbjct: 134 EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVII 192
Query: 122 TTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
H + + A+ + +M KG ++ + S +EL+A G
Sbjct: 193 IAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 69.6 bits (171), Expect = 3e-14
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
+ + Q ALF T+ E F L ++ E + ++ E +++ L +R S LSG
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSG 133
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA L++ P +++LDEP LD L L+R+ G T + TH EE
Sbjct: 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE 193
Query: 129 A-RQANVVGLMRKGVLLAEKSPEEL 152
A ++ + +M KG + +PEE+
Sbjct: 194 ALTMSDRIAVMNKGKIQQIGTPEEI 218
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 70.3 bits (172), Expect = 3e-14
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 11 IGFMPQ--ETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH--RTCST 66
+ + Q E LF + TI + F + E + K + L + R+
Sbjct: 118 VSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG 176
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ RRV+IA L P ++I DEPT+GLDP H Q + +N +T+ + TH +
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236
Query: 127 EEARQ-ANVVGLMRKGVLLAEKSPEEL 152
E + A+ V +M KG +L +P E+
Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYEI 263
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 70.4 bits (173), Expect = 4e-14
Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASL-YRISSEEFRAKMKELQEVLDLPP-DHRTCSTLS 68
IG + Q ALF T+ E F + ++ E +A+++E E++ L R LS
Sbjct: 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLS 138
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
GGQ +RV++A L+ P +++LDEP S LD L + L+ + G T + TH E
Sbjct: 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198
Query: 128 EA-RQANVVGLMRKGVLLAEKSPEEL 152
EA ++ + +M G + +PEE+
Sbjct: 199 EALAMSDRIAVMNDGRIEQVGTPEEI 224
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 69.1 bits (169), Expect = 5e-14
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IGF+ Q ALF T+ + F + + + +A+++EL E++ L R + LSG
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSG 133
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHYIEE 128
GQ +RV++A L P +++LDEP LD + +L+++ T + TH EE
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEEL 152
A + A+ + +M G + SP+E+
Sbjct: 194 AMEVADRIVVMSNGKIEQIGSPDEV 218
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 69.4 bits (170), Expect = 5e-14
Identities = 48/144 (33%), Positives = 74/144 (51%), Gaps = 20/144 (13%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
I F P L DE T+A +R+SS M L+E+ D P H LSGG
Sbjct: 100 IAFGPINLGL-DEETVA---------HRVSSA---LHMLGLEELRDRVPHH-----LSGG 141
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE-E 128
+ +RV+IA + P +++LDEPT+GLDP +L + G T+I +TH ++
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201
Query: 129 ARQANVVGLMRKGVLLAEKSPEEL 152
A+ + +M KG ++A + EE+
Sbjct: 202 PEMADYIYVMDKGRIVAYGTVEEI 225
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 68.8 bits (169), Expect = 6e-14
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 2 TATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQEVLD-LP 58
T SL IG + Q+ LF++ T+AE + + EE A+ E + LP
Sbjct: 70 TLASLRR-QIGLVSQDVFLFND-TVAENIAY--GRPGATREEVEEAARAANAHEFIMELP 125
Query: 59 PDHRTC-----STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS 113
+ T LSGGQ +R++IA LL P ++ILDE TS LD L+R+
Sbjct: 126 EGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM 185
Query: 114 SNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
N T +I H + A+ + ++ G ++ + EEL+A GV
Sbjct: 186 KNRTTFVI-AHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGV 229
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 70.1 bits (172), Expect = 6e-14
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IG++ QE LF ++ ++ + R E R + + E+L + R LSG
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRY--GMKRARPSERRISFERVIELLGIGHLLGRLPGRLSG 134
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
G+ +RV+I LL +P L+++DEP + LD + YL+R+ + G I+ +H ++E
Sbjct: 135 GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE 194
Query: 129 -ARQANVVGLMRKGVLLAEKSPEELIAS 155
R A+ V ++ G + A E+ AS
Sbjct: 195 VLRLADRVVVLEDGRVAAAGPIAEVWAS 222
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 66.9 bits (164), Expect = 9e-14
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ +A L P +++LDEP S LD Q + + + G T I+ H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 127 EEARQANVVGLMRKGVL 143
E A+ + ++ G +
Sbjct: 157 ETLASADRILVLEDGRV 173
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 67.8 bits (166), Expect = 9e-14
Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 12/157 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-PDHRTCSTLSG 69
IG + + L++ T E + + +L + + E+ ++DL + S
Sbjct: 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSR----IDEVLNIVDLTNTGKKKAKQFSL 127
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G +R+ IA+ LL+ P L+ILDEPT+GLDP+ + ++ G T+I+++H + E
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV 187
Query: 130 RQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
+Q A+ +G++ +GVL + ++LE++F
Sbjct: 188 QQLADHIGIISEGVLGYQGKIN------KSENLEKLF 218
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 68.4 bits (168), Expect = 9e-14
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIIT 122
STLSGGQ +RV+IA L+ P +++ DEP + LDP A L+ ++ G T+I+
Sbjct: 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN 204
Query: 123 THYIEEARQ--ANVVGLMRKGVLLAEKSPEEL 152
H ++ A++ ++G ++ G ++ + EL
Sbjct: 205 LHQVDLAKKYADRIIG-LKAGRIVFDGPASEL 235
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 68.1 bits (167), Expect = 1e-13
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 32 FYASL---YRISSEEFRAKMKELQEVLDLPPDH---RTCSTLSGGQVRRVSIAVTLLHTP 85
F+AS+ + E A + L E+L H R +LS G+ RRV IA L+ P
Sbjct: 133 FFASIGIYQEDLTAEDLAAAQWLLELLGA--KHLADRPFGSLSQGEQRRVLIARALVKDP 190
Query: 86 SLVILDEPTSGLDPMLAHYFWQYLQ--RMSSNGQTIIITTHYIEEA 129
L+ILDEP GLD + L+ S ++ TH+ EE
Sbjct: 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI 236
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 68.3 bits (167), Expect = 1e-13
Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS--TLSGG 70
F E+ LF++ T+ F ++++ +E + L L D + S +SGG
Sbjct: 91 FQFPESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGG 149
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIEE- 128
Q+R+++I L P +++LDEPT+GLDP + L+ + +TII+ +H + E
Sbjct: 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEV 209
Query: 129 ARQANVVGLMRKGVLLAEKSPEELIAS 155
AR A+ V +M++G ++++ SP+EL
Sbjct: 210 ARYADEVIVMKEGSIVSQTSPKELFKD 236
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 68.1 bits (166), Expect = 2e-13
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH--RTCSTLSGG 70
F E LF E TI + F + +E K+ EL +++ LP D+ R+ LSGG
Sbjct: 96 FQFPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGG 154
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEA 129
Q RRV++A + + ++LDEPT GLDP F +R++ + II+ TH +++
Sbjct: 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV 214
Query: 130 -RQANVVGLMRKGVLLAEKSPEELIAS 155
R A+ V +M +G +++ SP E+ ++
Sbjct: 215 LRIADEVIVMHEGKVISIGSPFEIFSN 241
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 68.6 bits (168), Expect = 2e-13
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQ---EVLDLPPDHRT---- 63
IG + Q+ LF TI E + EE +K + +LP + T
Sbjct: 405 IGIVSQDPLLFSG-TIRENIALGRP--DATDEEIEEALKLANAHEFIANLPDGYDTIVGE 461
Query: 64 -CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LSGGQ +R++IA LL P ++ILDE TS LD L+++ T+II
Sbjct: 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII- 520
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQA 175
H + + A+ + ++ G ++ + EEL+A G ++ RL Q A
Sbjct: 521 AHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGG------LYARLYQAQGGA 567
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 67.8 bits (166), Expect = 2e-13
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 8/155 (5%)
Query: 17 ETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTLSGGQVR 73
E LF+E TI + F +S EE ++K ++ L + ++ LSGGQ R
Sbjct: 93 EYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKR 151
Query: 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE-ARQ 131
RV+IA + P ++ILDEPT+GLDP ++ + TII+ +H +E+ A+
Sbjct: 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKL 211
Query: 132 ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFL 166
A+ + +M KG + +P E+ V++LE + L
Sbjct: 212 ADRIIVMNKGKCELQGTPREVFKE--VETLESIGL 244
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 66.8 bits (163), Expect = 3e-13
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 13/152 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPPDHRTCS---T 66
IG++PQE ++F ++ + + +S+E+ + EL E + +H S +
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI--EHLRDSMGQS 137
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGG+ RRV IA L P ++LDEP +G+DP+ + ++ + +G ++IT H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 127 EEA----RQANVVGLMRKGVLLAEKSPEELIA 154
E +A +V +G L+A +P E++
Sbjct: 198 RETLAVCERAYIVS---QGHLIAHGTPTEILQ 226
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 66.9 bits (164), Expect = 3e-13
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQ---EVLDLPPDHRTC--- 64
IG +PQ+T LF++ TI + Y + EE K Q +++ P + T
Sbjct: 77 IGVVPQDTVLFND-TIGYNIR-YGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE 133
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LSGG+ +RV+IA +L P +++LDE TS LD L+ +S TI+I
Sbjct: 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVI- 192
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + A+ + +++ G ++ + EEL+A G+
Sbjct: 193 AHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 68.1 bits (167), Expect = 3e-13
Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 12 GFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC-STLSGG 70
G + Q ALF T+A+ + + E ++ EL +++ LP R LSGG
Sbjct: 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGG 138
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQY--LQRMSSNGQTIIITTHYIE 127
Q +RV++A L +P L++LDEP S LD + H + LQR G T I+ TH E
Sbjct: 139 QQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL--GVTTIMVTHDQE 196
Query: 128 EA-RQANVVGLMRKGVLLAEKSPEEL 152
EA A+ + +M GV+ +P+E+
Sbjct: 197 EALSMADRIVVMNHGVIEQVGTPQEI 222
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 66.4 bits (163), Expect = 3e-13
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGGQ +RV+IA L P +++ DEPTS LDP L ++ ++ G T+++ TH
Sbjct: 134 AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTH 193
Query: 125 YIEEARQ-ANVVGLMRKGVL 143
+ AR+ A+ V M G +
Sbjct: 194 EMGFAREVADRVIFMDDGRI 213
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 67.1 bits (164), Expect = 3e-13
Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +RV+IA L P +++ DEPTS LDP L + +Q ++ G+T+++ TH +
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM 212
Query: 127 EEARQ-ANVVGLMRKGVLLAEKSPEEL 152
AR ++ V + +G + E PE++
Sbjct: 213 GFARDVSSHVIFLHQGKIEEEGPPEQV 239
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 67.1 bits (164), Expect = 3e-13
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
Query: 51 LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQ 110
+ + D PP H LS GQ +RV+IA L P +++LDEP + LDP + L
Sbjct: 128 MWDFRDKPPYH-----LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD 182
Query: 111 RMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
R+ + G+T+I+ TH ++ A + A+ V ++++G +LAE L D +E+ LRL
Sbjct: 183 RLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE---DIVEQAGLRL 238
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 66.5 bits (163), Expect = 3e-13
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC--STLS 68
IG + Q L T+ E + + E ++ EL E++ L D + LS
Sbjct: 84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLS 142
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
GGQ +RV IA L + P +++ DE TS LDP L+ ++ G TI++ TH +E
Sbjct: 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202
Query: 128 EARQ-ANVVGLMRKGVLLAEKSPEELIA 154
++ + V +M KG ++ E + EE+ A
Sbjct: 203 VVKRICDRVAVMEKGEVVEEGTVEEVFA 230
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 66.5 bits (163), Expect = 4e-13
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 10 YIGFMPQETALFDEF------TIAETFQFYASLYRISSEEFRAKMKE-LQEV--LDLPPD 60
IG++PQ++++ F + +R +++ + K+ E L+ V DL
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL--R 133
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
R LSGGQ +RV +A L P L++LDEP +G+D + L+ + G+T++
Sbjct: 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVL 193
Query: 121 ITTHYIEEARQA--NVVGLMRKGVLLAEK----SPEELIASYG-VDSLEEVFLRLCH 170
+ TH + V+ L R + + E L ++G + R H
Sbjct: 194 MVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEENLEKAFGGSLAHALAGYRHHH 250
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 66.5 bits (162), Expect = 5e-13
Identities = 34/101 (33%), Positives = 58/101 (57%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
HR+ TLSGGQ + V++A L P +I DE TS LDP + ++++ G+TI+
Sbjct: 131 HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIV 190
Query: 121 ITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSL 161
TH +EE A+ + +M +G ++ E PE +++ + +L
Sbjct: 191 YITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 66.1 bits (162), Expect = 6e-13
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 37 YRISSEEFRAKMKELQEVLDLPPD--HRTCS-TLSGGQVRRVSIAVTLLHTPSLVILDEP 93
R EF ++KE E+L L + R + SGG+ +R I LL P L ILDEP
Sbjct: 112 ARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 94 TSGLD----PMLAHYFWQYLQRMSSNGQTIIITTHY--IEEARQANVVGLMRKGVLLAEK 147
SGLD ++A + + G+ ++I THY + + + + V ++ G ++
Sbjct: 172 DSGLDIDALKIVAE----GINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
Query: 148 SPE 150
PE
Sbjct: 228 DPE 230
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 67.0 bits (164), Expect = 6e-13
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASL--YRISSEEFRAKMKELQEVLDLPP-DHRTCSTL 67
+GF+ Q ALF T+A+ F + R S E RA+++EL ++ L R + L
Sbjct: 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQL 138
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYI 126
SGGQ +RV++A L P +++LDEP LD + ++L+++ G T + TH
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198
Query: 127 EEARQ-ANVVGLMRKGVLLAEKSPEE 151
EEA + A+ V ++ +G + P+E
Sbjct: 199 EEALELADRVVVLNQGRIEQVGPPDE 224
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 63.1 bits (154), Expect = 8e-13
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTLS 68
IG + Q+ LF E T+ E F +E A+ +E E + LP D TLS
Sbjct: 38 IGVVFQDPQLFPELTVRENLFFGLR-----DKEADARAEEALERVGLPDFLDREPVGTLS 92
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTS 95
GGQ +RV+IA LL P L++LDEPT+
Sbjct: 93 GGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 65.1 bits (159), Expect = 8e-13
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC-STLSG 69
IG + Q+ L + + E F + + E R ++ E++ L HR + LSG
Sbjct: 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSG 139
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G+ +RV+IA ++++P+++I DEPT LDP L++++ G T+++ TH
Sbjct: 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH----- 194
Query: 130 RQANVVGLMRKGVLLAEK 147
+V R V+ E+
Sbjct: 195 -AKELVDTTRHRVIALER 211
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 65.1 bits (159), Expect = 1e-12
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC---ST 66
+GF+ Q L +FT E + + S +E + + E+ E + L +HR S
Sbjct: 84 KLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL--EHRINHRPSE 141
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT-IIITTHY 125
LSGG+ +RV+IA L++ PSLV+ DEPT LD A + + ++ T ++ TH
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201
Query: 126 IEEARQANVVGLMRKGVL 143
+E A++ + V M+ G L
Sbjct: 202 LELAKKLDRVLEMKDGQL 219
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 64.9 bits (158), Expect = 2e-12
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGGQ +R+ IA L P +++LDEPTS LDP+ + L+ +S N TI+I TH
Sbjct: 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTH 203
Query: 125 YIEEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFL 166
I +A R A+ + M +G L+ E P I + L E +L
Sbjct: 204 NIGQAIRIADYIAFMYRGELI-EYGPTREIVERPKNKLTEEYL 245
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 64.8 bits (158), Expect = 2e-12
Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTH 124
LSGGQ +RV+IA L PS++ILDE TS LDP ++++ S TII TH
Sbjct: 142 ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
+ EA +A+ V +M KG + E +P E+ + L + L L
Sbjct: 202 DLSEAMEADHVIVMNKGTVYKEGTPTEIFDH--AEELTRIGLDL 243
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 65.6 bits (161), Expect = 3e-12
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LS GQ +R+++A LL L++LDEPT+ LD Q L S QT ++ TH
Sbjct: 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTH 542
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAI 176
+E+ Q + + +M+ G ++ + EL + G +F L + + I
Sbjct: 543 QLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGG------LFATLLAHRQEEI 588
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 64.2 bits (157), Expect = 3e-12
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 6 LGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTC 64
L I + Q AL T+ E F + + E + E E++ L H+
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITT 123
LSGG +RV +A L P ++++DE S LDP++ L R+ + +TI+ T
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218
Query: 124 HYIEEA-RQANVVGLMRKGVLLAEKSPEELIAS 155
H ++EA R + + +M+ G L+ +PEE++ +
Sbjct: 219 HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 63.9 bits (156), Expect = 3e-12
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H + LSGGQ +R+ IA L P +++LDEPTS LDP+ + +Q + TI+
Sbjct: 139 HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIV 197
Query: 121 ITTHYIEEA-RQANVVGLMRKGVLLAEKSPEEL 152
I TH +++A R ++ G L+ E++
Sbjct: 198 IVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 63.7 bits (156), Expect = 4e-12
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 10/155 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-KMKELQE-VLDLPPDHRTC---- 64
IG + QE LFD TIAE + Y E A K + + ++ LP + T
Sbjct: 79 IGLVSQEPVLFDG-TIAENIR-YGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGER 136
Query: 65 -STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123
S LSGGQ +R++IA LL P +++LDE TS LD + L R G+T I+
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK-GRTTIVIA 195
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + R A+++ +++ G ++ + + +EL+A GV
Sbjct: 196 HRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGV 230
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 65.0 bits (159), Expect = 4e-12
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 37/155 (23%)
Query: 2 TATSLGSTYIGFMPQETALFDEFTIAET-----------FQFYASLYRISSEEFRAKMKE 50
T +G++ QE L E T+ + Y + ++ + E
Sbjct: 59 EVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 51 LQEV-------------------LDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILD 91
L+ + L P + R S+LSGG RRV++A LL P L++LD
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
Query: 92 EPTSGLDPMLAHYFW--QYLQRMSSNGQTIIITTH 124
EPT+ LD L W YL+R T+I+ +H
Sbjct: 179 EPTNHLD--LESIEWLEDYLKRYPG---TVIVVSH 208
Score = 52.3 bits (126), Expect = 8e-08
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 20/121 (16%)
Query: 11 IGFMPQETA-LFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD--HRTCSTL 67
IG+ Q L + T+ E +E RA + + + L
Sbjct: 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDE--QEVRAYLGRF----GFTGEDQEKPVGVL 440
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNGQTIIITT 123
SGG+ R+ +A LL P+L++LDEPT+ LD L + G T+++ +
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF------EG-TVLLVS 493
Query: 124 H 124
H
Sbjct: 494 H 494
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 63.4 bits (155), Expect = 5e-12
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 16 QETALFDEFTIAE------------TFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HR 62
Q T LF T+ E + R E R + +EL E + L R
Sbjct: 86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR 145
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIII 121
LS GQ RR+ IA L P L++LDEP +GL+P + ++ + G TI++
Sbjct: 146 PAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL 205
Query: 122 TTHYIEEARQ-ANVVGLMRKGVLLAEKSPEE 151
H ++ A+ + ++ G ++AE +PEE
Sbjct: 206 IEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 62.6 bits (153), Expect = 5e-12
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 28/115 (24%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSG 69
G++ Q+ T+ E +F A L +S E
Sbjct: 80 STGYVEQQDVHSPNLTVREALRFSALLRGLSVE--------------------------- 112
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
Q +R++I V L PS++ LDEPTSGLD A+ ++L++++ +GQ I+ T H
Sbjct: 113 -QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 63.0 bits (154), Expect = 5e-12
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 30/131 (22%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLY-------RISSEEFRAKMKELQEVLDLPPDH-- 61
IG++PQ+ LF Y +L ++ +E + EL V D H
Sbjct: 80 IGYVPQDVTLF-----------YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPN 128
Query: 62 --------RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS 113
R LSGGQ + V++A LL+ P +++LDEPTS +D + L+++
Sbjct: 129 GLDLQIGERGRG-LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187
Query: 114 SNGQTIIITTH 124
+T+II TH
Sbjct: 188 G-DKTLIIITH 197
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 64.5 bits (158), Expect = 6e-12
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEE-FRAK--------MKELQEVLDLPPDH 61
IG++PQ+ LF T+ + A EE RA ++ + LD+
Sbjct: 541 IGYVPQDPRLFYG-TLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLDMQIGE 597
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R S LSGGQ + V++A LL P +++LDEPTS +D F L+R + G+T+++
Sbjct: 598 RGRS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVL 655
Query: 122 TTH 124
TH
Sbjct: 656 VTH 658
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 62.9 bits (154), Expect = 6e-12
Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-----HRTCS 65
I ++P+ +F T+ E Y +E + + E EV +L P ++
Sbjct: 80 IAYVPEGRRIFPRLTVEENLL--LGAYARRDKEAQERDLE--EVYELFPRLKERRNQRAG 135
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTH 124
TLSGG+ + ++IA L+ P L++LDEP+ GL P + ++ ++ + G TI++
Sbjct: 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQ 195
Query: 125 YIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154
A + A+ ++ G ++ + EL+A
Sbjct: 196 NARFALEIADRGYVLENGRIVLSGTAAELLA 226
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 62.4 bits (152), Expect = 7e-12
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSG 69
Y+G +P L E + E F+A I R L V + + LS
Sbjct: 77 YLGHLP---GLKPELSALENLHFWA---AIHGGAQRTIEDALAAVGLTGFEDLPAAQLSA 130
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNGQTIIITTH 124
GQ RR+++A L L ILDEPT+ LD +LA +L R G +++TTH
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR----GGIVLLTTH 185
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 64.1 bits (156), Expect = 8e-12
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEV---LDLPPDHRTC--- 64
GF+ Q+ L+ T+ ET F + L S + K+ + V L L T
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 65 ---STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
+SGG+ +RVSIA +L PSL+ILDEPTSGLD A+ L ++ G+TI+
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 122 TTH 124
+ H
Sbjct: 262 SMH 264
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 64.5 bits (157), Expect = 8e-12
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 55 LDLPPDHRTCSTLSGGQVRRVSIAVTLLHT---PSLVILDEPTSGLDPMLAHYFWQYLQR 111
LD P R S+LSGG+++R+ +A LL P+L +LDEPT+GL LQ
Sbjct: 798 LDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQS 857
Query: 112 MSSNGQTIIITTHYIEEARQANVV------GLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
++ G T++I H + + A+ V G G LLA SPEELI + +
Sbjct: 858 LTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH---LHTPTAKA 914
Query: 166 LRLCHQQNQAIEAEPEKGPN 185
LR Q + P+ P
Sbjct: 915 LRPYLSSPQELPYLPDPSPK 934
Score = 53.3 bits (128), Expect = 5e-08
Identities = 53/196 (27%), Positives = 79/196 (40%), Gaps = 48/196 (24%)
Query: 21 FDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD----------------LPPDHRTC 64
F + ++ E F F + L +K ++EVL L P+ R
Sbjct: 424 FQQMSLQELFIFLSQL--------PSKSLSIEEVLQGLKSRLSILIDLGLPYLTPE-RAL 474
Query: 65 STLSGGQVRRVSIAVTLLHTPSLV--ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+TLSGG+ R ++A L + ILDEP+ GL P H ++++ G T+++
Sbjct: 475 ATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLV 534
Query: 123 TH----------YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQ 172
H I+ A + G G +L SP E +A DSL +LR Q
Sbjct: 535 EHDEQMISLADRIIDIGPGAGIFG----GEVLFNGSPREFLAK--SDSLTAKYLR----Q 584
Query: 173 NQAIEAEPEKGPNKKG 188
I PEK N G
Sbjct: 585 ELTIPI-PEKRTNSLG 599
Score = 34.0 bits (78), Expect = 0.084
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 25 TIAETFQFYASLYRISSEEFRAKMKELQEVLDLP----PDHRTCSTLSGGQVRRVSIAVT 80
+AETF F L +I K LQ ++D P + S+LS + + IA
Sbjct: 1665 EVAETFPF---LKKIQ--------KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKF 1713
Query: 81 LL---HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQAN 133
L P+L +LDE + LD L+ + S G ++I H +QA+
Sbjct: 1714 LYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQAD 1769
Score = 28.3 bits (63), Expect = 5.0
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 65 STLSGGQVRRVSIA--VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
TLS G+ R+ +A ++ T + +L++P SGL P A Q ++ + +N T+I T
Sbjct: 1386 DTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIAT 1445
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 62.7 bits (153), Expect = 9e-12
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 49 KELQEVLD---LPPD--HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAH 103
+ + E+LD LPP R LSGGQ +R++IA L+ P L+ILDEPTS LD +
Sbjct: 119 QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 104 YFWQYLQRMSSNGQ-TIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
L + T + +H + + + +M G ++ EEL++
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 60.9 bits (149), Expect = 9e-12
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LS G+ + V IA L L+ILDEPT+ L P ++ ++R+ + G +I +H +
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 127 EEARQ-ANVVGLMRKGVLLAE 146
+E + A+ V ++R G ++
Sbjct: 143 DEVFEIADRVTVLRDGRVVGT 163
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 62.2 bits (152), Expect = 1e-11
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL----PPDHRTCST 66
IG + Q+ L + T+ E R+ + R + + EVLDL S
Sbjct: 81 IGVVFQDFRLLPDRTVYENVAL---PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ 137
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGG+ +RV+IA +++ P++++ DEPT LDP L+ + + ++ G T+++ TH
Sbjct: 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 62.2 bits (152), Expect = 1e-11
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 7/147 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISS-EEFRAKMKELQEVLDLPP---DHRTCST 66
+G + Q+ F +I + + L+ I EE +++E L D
Sbjct: 83 VGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALG 141
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ +A L + P +++LDEPTS LDP+ + + + TI+I TH +
Sbjct: 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM 200
Query: 127 EEA-RQANVVGLMRKGVLLAEKSPEEL 152
++A R A+ + G L+ E++
Sbjct: 201 QQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 61.9 bits (151), Expect = 1e-11
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTL 67
I + Q AL+ T+ + F L ++ +E +++E+ E+L + +H R L
Sbjct: 74 IAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI--EHLLDRKPKQL 131
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTH-Y 125
SGGQ +RV++ ++ P + ++DEP S LD L L+R+ G T I TH
Sbjct: 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191
Query: 126 IEEARQANVVGLMRKGVL 143
+E A+ + +M G +
Sbjct: 192 VEAMTMADRIAVMNDGQI 209
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 62.3 bits (152), Expect = 1e-11
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 12/125 (9%)
Query: 38 RISSEEFRAKMKELQEV------LDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILD 91
++ ++ + + +L + LD P LSGGQ +RV+IA L P ++I D
Sbjct: 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 92 EPTSGLDPMLAHYFWQYLQRMSSNG-QTIIITTHYIEEARQANVVGLMRKGVLLAEKSPE 150
E TS LDP + + + +T+I TH ++EA A+ V + +G L+A+ P+
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227
Query: 151 ELIAS 155
E++ +
Sbjct: 228 EILNN 232
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 62.9 bits (153), Expect = 2e-11
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 29/163 (17%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMK-------------ELQEVLD 56
YIG + QE L+ T+ + L +E A+MK + +E+LD
Sbjct: 366 YIGILHQEYDLYPHRTVLDNLTEAIGLEL--PDEL-ARMKAVITLKMVGFDEEKAEEILD 422
Query: 57 LPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYFWQYLQRM 112
PD LS G+ RV++A L+ P +VILDEPT +DP+ + H + + M
Sbjct: 423 KYPD-----ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEM 477
Query: 113 SSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154
QT II +H ++ + LMR G ++ PEE++
Sbjct: 478 ---EQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
Score = 52.9 bits (127), Expect = 4e-08
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 11 IGFMPQET-ALFDEFTIAETFQFYASLYRI--SSEEFRAKMKELQEVLDLPPDHR---TC 64
I M Q T AL+ + T+ + +L I +E + +L E++ L HR
Sbjct: 111 IAIMLQRTFALYGDDTVLD--NVLEALEEIGYEGKEAVGRAVDLIEMVQL--SHRITHIA 166
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITT 123
LSGG+ +RV +A L P L + DEPT LDP A L+ + ++G ++++T+
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 124 HY---IEEARQANVVGLMRKGVLLAEKSPEELIASY 156
H+ IE+ + + G + E +P+E++A +
Sbjct: 227 HWPEVIEDLSDKAI--WLENGEIKEEGTPDEVVAVF 260
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 61.7 bits (150), Expect = 2e-11
Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 16/165 (9%)
Query: 11 IGFMPQETALFDEFTIAE-----TFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTC 64
+ ++PQ+ + T+ E + ++ +L R + + R K++E ++ L P HR
Sbjct: 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAAD-REKVEEAISLVGLKPLAHRLV 145
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYF--WQYLQRMS-SNGQTIII 121
+LSGG+ +R IA+ + ++LDEPTS LD +AH + R+S G T+I
Sbjct: 146 DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD--IAHQVDVLALVHRLSQERGLTVIA 203
Query: 122 TTHYIE-EARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
H I AR + + +R G ++A+ +P EL+ ++LE+++
Sbjct: 204 VLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG---ETLEQIY 245
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 61.2 bits (149), Expect = 2e-11
Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 7/149 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQF----YASLYRISSEEFRAKMKELQEVLDLPP-DHRTCS 65
+GF+ Q ALF T+ + F R E RAK+ EL +++ L R +
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA 135
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTH 124
LSGGQ +RV++A L P +++LDEP LD + ++L+R+ T + TH
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH 195
Query: 125 YIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
EEA + A+ V +M KG + +P+E+
Sbjct: 196 DQEEALEVADRVVVMNKGRIEQVGTPDEV 224
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 62.3 bits (151), Expect = 3e-11
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 4/146 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
+ + Q ALF + + F ++ + ++ + +++ L + LSG
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSG 140
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN--GQTIIITTHYIE 127
G +R++IA + P +++LDEP S LD + + + + TI+ TH +
Sbjct: 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD 200
Query: 128 EARQ-ANVVGLMRKGVLLAEKSPEEL 152
+A A+ G+M+ G L A P+ L
Sbjct: 201 DALTLADKAGIMKDGRLAAHGEPQAL 226
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 61.8 bits (150), Expect = 3e-11
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
I M Q ALF T+ + F ++ E +++ E+ ++ + R LSG
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSG 152
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPML----AHYFWQYLQRMSSNGQTIIITTHY 125
GQ +RV++A +L P L++LDEP LD L L+R+ G T ++ TH
Sbjct: 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV---GVTCVMVTHD 209
Query: 126 IEEA-RQANVVGLMRKGVLLAEKSPEEL 152
EEA A + +M +G + PEE+
Sbjct: 210 QEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 61.3 bits (149), Expect = 4e-11
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 39 ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
I EE + ++ E E++ + R + LSGGQ +RV+IA + P ++ILDE TS L
Sbjct: 112 IPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSML 171
Query: 98 DPMLAHYFWQYLQRM-SSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154
DP + ++ + T+I TH ++E ++ V +M+ G + + +P EL +
Sbjct: 172 DPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 60.1 bits (146), Expect = 6e-11
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +RV+IA L P +++ DEPTS LDP L +++++ +T++I TH +
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204
Query: 127 EEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
AR A+ M +G ++ + + L A
Sbjct: 205 SFARDVADRAIFMDQGRIVEQGPAKALFAD 234
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 60.2 bits (146), Expect = 7e-11
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 39 ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
+S ++ A+ ++L + L L P R LSGGQ +RV+IA L+ P +++ DEPT+ L
Sbjct: 113 LSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKG 141
DP + ++ ++ G T +I TH +E AR+ A+ V M G
Sbjct: 173 DPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENG 217
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 61.3 bits (149), Expect = 9e-11
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA L+ P ++I DE TS LD + ++ + G+T+II H +
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHRL 652
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIASYG 157
R + + ++ KG + EEL+A G
Sbjct: 653 STVRACDRIIVLEKGQIAESGRHEELLALQG 683
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 60.2 bits (146), Expect = 9e-11
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Query: 58 PPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-G 116
+ LS GQ +RV+IA L+ P +++LDEPT+GLDPM + L M G
Sbjct: 133 HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 117 QTIIITTHYIEE-ARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
TIII TH I+ + V +M++G ++ + +P+E+ A + L +V LRL
Sbjct: 193 LTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEM--LRKVNLRL 243
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 59.2 bits (144), Expect = 9e-11
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
+LSGGQ +R++IA LL L+I DEPTSGLD + ++ +++ G+ +I+ TH
Sbjct: 126 SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD 185
Query: 126 IE 127
E
Sbjct: 186 YE 187
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 59.6 bits (145), Expect = 1e-10
Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 6/97 (6%)
Query: 60 DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHY--FWQYLQRMSSNGQ 117
D R LSGGQ +R +A+ L +V+LDEPT+ LD + H + ++ +++ G+
Sbjct: 133 DRRLTD-LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELMRLMRELNTQGK 189
Query: 118 TIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEELI 153
T++ H + +A R + + ++ G ++A+ +PEE++
Sbjct: 190 TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 59.2 bits (144), Expect = 1e-10
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQ---EVLDLPPDHRTC--- 64
IG + Q+T LF TI E + + EE KE ++ LP + T
Sbjct: 79 IGVVLQDTFLFSG-TIMENIRLGRP--NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGE 135
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LS G+ + ++IA +L P ++ILDE TS +D + L+++ G+T II
Sbjct: 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIII 194
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
H + + A+ + ++ G ++ E + +EL+A G
Sbjct: 195 AHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 58.9 bits (143), Expect = 1e-10
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLY-RISSEEFRAKMKE------LQEVLDLPPDHRT 63
IG++ Q L T + Q L +S +E R + + L + LD P +
Sbjct: 84 IGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHN-- 141
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIIT 122
LSGGQ +RV+IA L+H P LV+ DEPT+ LD + +Q+++ G TI+I
Sbjct: 142 ---LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIV 198
Query: 123 TH 124
TH
Sbjct: 199 TH 200
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 59.1 bits (143), Expect = 2e-10
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTII 120
R LSGG+ +RVSIA TL + P +++LDEPTS LDP + + ++ + T+I
Sbjct: 127 RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVI 186
Query: 121 ITTHYIEEA-RQANVVGLMRKGVLL 144
TH +E+A R + + KG+L+
Sbjct: 187 WITHNMEQAKRIGDYTAFLNKGILV 211
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 58.7 bits (142), Expect = 2e-10
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE-LQEV-LDLPPDHRTCSTLS 68
+GF+ Q L +FT E + + E ++ E L V L+ +HR S LS
Sbjct: 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP-SELS 147
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHYIE 127
GG+ +RV+IA L++ P LV+ DEPT LD A +Q L ++ G ++ TH ++
Sbjct: 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207
Query: 128 EARQANVVGLMRKGVLLAE 146
A++ + MR G L AE
Sbjct: 208 LAKRMSRQLEMRDGRLTAE 226
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 59.7 bits (145), Expect = 2e-10
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 11/149 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA--KMKELQEVLDLPPDHRTCSTLS 68
IG++ Q+ LF +T+ ++ +++ +F + ++ +LD P TLS
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRY--GMWKSMRAQFDQLVALLGIEHLLDRYP-----GTLS 130
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT-IIITTHYIE 127
GG+ +RV+I LL P L+++DEP + LD YL+R+ I+ +H ++
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190
Query: 128 E-ARQANVVGLMRKGVLLAEKSPEELIAS 155
E R A+ V ++ G + A EE+ S
Sbjct: 191 EVLRLADRVVVLENGKVKASGPLEEVWGS 219
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 58.7 bits (142), Expect = 2e-10
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA T+ P ++++DEPTS LDP+ H + ++ + N TI+I TH +
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKN-YTIVIVTHSM 204
Query: 127 EEARQ 131
++AR+
Sbjct: 205 QQARR 209
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 58.1 bits (141), Expect = 2e-10
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSE----EFRAKMKELQEVLDLPPDHRTC 64
Y+G P + E T E F+ + + E A++ L + DLP
Sbjct: 78 LYLGHQP---GIKTELTALENLHFWQRFHGSGNAATIWEALAQVG-LAGLEDLP-----V 128
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNGQTII 120
LS GQ RRV++A L L ILDEP + LD +L + + G ++
Sbjct: 129 GQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ----GGIVL 184
Query: 121 ITTH 124
+TTH
Sbjct: 185 LTTH 188
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 59.2 bits (144), Expect = 3e-10
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 11 IGFMPQETALFDEFTIAETFQFY----------ASLYRISSEEFRAKMKELQEVLDLPPD 60
I ++PQ LF TIAE + +L R +EF + L + LD P
Sbjct: 398 IAWVPQHPFLF-AGTIAENIRLARPDASDAEIREALERAGLDEF---VAALPQGLDTPIG 453
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
+ LSGGQ +R+++A L L++LDEPT+ LD + L+ + + G+T++
Sbjct: 454 EGG-AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRAL-AQGRTVL 511
Query: 121 ITTHYIEEARQANVV 135
+ TH + A A+ +
Sbjct: 512 LVTHRLALAALADRI 526
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 58.1 bits (141), Expect = 3e-10
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 39 ISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
+S ++ A+ ++L E L L P R LSGGQ +RV+IA L+ P +++ DEPT+ L
Sbjct: 113 LSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKG 141
DP + ++ ++ G T +I TH +E AR+ A+ V M G
Sbjct: 173 DPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENG 217
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 58.9 bits (143), Expect = 3e-10
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 3/143 (2%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRR 74
Q AL T+ E F + + E + E E++ L + + LSGG +R
Sbjct: 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQR 172
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEA-RQA 132
V +A L + P ++++DE S LDP++ L + + +TI+ TH ++EA R
Sbjct: 173 VGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232
Query: 133 NVVGLMRKGVLLAEKSPEELIAS 155
+ + +M+ G ++ +PEE++ +
Sbjct: 233 DRIAIMKDGEIVQVGTPEEILLN 255
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 59.2 bits (144), Expect = 4e-10
Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 11 IGFMPQETALFDEFTI--------AETFQFYASLYRIS------SEEFRA---KMKELQE 53
+G++PQE L T+ AE IS + A + ELQE
Sbjct: 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQE 129
Query: 54 VLD-------------------LPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPT 94
++D PP + LSGG+ RRV++ LL P +++LDEPT
Sbjct: 130 IIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 95 SGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LD + Q+LQ T++ TH
Sbjct: 190 NHLDAESVAWLEQHLQEYPG---TVVAVTH 216
Score = 35.7 bits (83), Expect = 0.018
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+ RV +A TL ++++LDEPT+ LD
Sbjct: 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 58.0 bits (141), Expect = 4e-10
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 16/148 (10%)
Query: 30 FQFYASLYRISSEEFRAKMKELQEVLDL----PPDHRTCSTLSGGQVRRVSIAVTLLH-T 84
FQ Y +L++ A L EV + R+ + LSGG+ +RV +A +L
Sbjct: 87 FQ-YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW 145
Query: 85 PS------LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-ARQANVVGL 137
P L++LDEP + LD + L + G +++++H + R A+ V L
Sbjct: 146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWL 205
Query: 138 MRKGVLLAEKSPEELIASYGVDSLEEVF 165
+++G LLA +E++ ++L +VF
Sbjct: 206 LKQGKLLASGRRDEVLT---PENLAQVF 230
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 58.2 bits (140), Expect = 4e-10
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TII 120
R + LSGGQ +RV++A + P ++ILDE TS LDP + + + Q T++
Sbjct: 136 REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVL 195
Query: 121 ITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
TH ++EA ++ + +M+ G ++ E +P EL A+
Sbjct: 196 SITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 57.1 bits (139), Expect = 4e-10
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFR----AKMKELQEVLDLPPDHRTCS 65
Y+G P + E T E +FY L+ +E A++ L D+P
Sbjct: 78 YLGHQP---GIKTELTALENLRFYQRLHGPGDDEALWEALAQVG-LAGFEDVP-----VR 128
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD----PMLAHYFWQYLQRMSSNGQTIII 121
LS GQ RRV++A L L ILDEP + +D L Q+ ++ G +I+
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQ----GGMVIL 184
Query: 122 TTH 124
TTH
Sbjct: 185 TTH 187
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 57.2 bits (139), Expect = 5e-10
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 8 STYIGFMPQETALFDEFTIAETFQFYASLY--RISSEEFRAKMKELQEVLDLPPDHRTCS 65
Y+G A+ T+AE +F+A+ + L + LP +
Sbjct: 75 CHYLG---HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGY---- 127
Query: 66 TLSGGQVRRVSIAVTLL-HTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNGQTII 120
LS GQ RRV++A L+ + P + ILDEPT+ LD + A +L + G +I
Sbjct: 128 -LSAGQKRRVALARLLVSNRP-IWILDEPTAALDAAAVALFAELIRAHLAQ----GGIVI 181
Query: 121 ITTH 124
TH
Sbjct: 182 AATH 185
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 58.8 bits (143), Expect = 5e-10
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 11 IGFMPQETALFDEFTIAET---FQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC--- 64
IG++PQ+ LFD TIAE F A ++ A + EL +L LP + T
Sbjct: 412 IGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHEL--ILRLPQGYDTRIGE 468
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+TLSGGQ +R+++A L P LV+LDEP S LD + + G T+++
Sbjct: 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIA 154
H + + +++ G + A EE++A
Sbjct: 529 AHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 57.9 bits (140), Expect = 5e-10
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH--RTCSTLSGG 70
P+ T I E + SL E +A++ EL +++ L + + LSGG
Sbjct: 101 VNPRMTV---RQIIGEPLRHLTSL---DESEQKARIAELLDMVGLRSEDADKLPRQLSGG 154
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT-IIITTHYIEEA 129
Q++R++IA L P L++LDE S LD +L + L+++ T + TH +
Sbjct: 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLV 214
Query: 130 -RQANVVGLMRKGVLLAEKSPEELIAS 155
V +M KG ++ E +L++
Sbjct: 215 QSFCQRVAVMDKGQIVEECDVAQLLSF 241
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 58.6 bits (142), Expect = 5e-10
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQEVLDLPPDH------R 62
+ + Q+ LF++ TIA Y + E Q+ +D P
Sbjct: 408 VALVSQDVVLFND-TIANNIA-YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LSGGQ +R++IA LL ++ILDE TS LD L+R+ T++I
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI- 524
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + +A+ + +M G ++ + EL+A G+
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGL 560
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 58.6 bits (143), Expect = 6e-10
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 39/150 (26%)
Query: 11 IGFMPQETALFDEFT--------IAETFQFYASLYRIS---------SEEFRAKMKELQE 53
+G++PQE L E T +AE I + A+ ELQE
Sbjct: 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQE 131
Query: 54 VLD-------------------LPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPT 94
++D PP + LSGG+ RRV++ LL P +++LDEPT
Sbjct: 132 IIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
Query: 95 SGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LD + Q+L T++ TH
Sbjct: 192 NHLDAESVAWLEQFLHDYPG---TVVAVTH 218
Score = 33.9 bits (79), Expect = 0.061
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+ R+ +A TL ++++LDEPT+ LD
Sbjct: 443 VGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 57.2 bits (139), Expect = 8e-10
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 36 LYRISSEEFRAKMKELQEVLDLPPDH--RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEP 93
+ ++S EE R ++ EL E + LP + R LSGGQ +R+ IA L P L++ DEP
Sbjct: 77 ITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136
Query: 94 TSGLDP--------MLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLL 144
S LD +L + LQ G T + +H + R ++ + +M G ++
Sbjct: 137 VSALDVSVQAQILNLL-----KDLQE--ELGLTYLFISHDLSVVRYISDRIAVMYLGKIV 189
Query: 145 AEKSPEELIA 154
EE+ +
Sbjct: 190 EIGPTEEVFS 199
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 57.8 bits (140), Expect = 9e-10
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLY----RISSEEFRAKMKELQEVLDLPPDH---RT 63
+GF+ Q ALF T+ + F ++ R ++ +AK+ +L E++ L H R
Sbjct: 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA--HLADRY 133
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIIT 122
+ LSGGQ +RV++A L P +++LDEP LD + ++L+++ + T +
Sbjct: 134 PAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV 193
Query: 123 THYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
TH EEA + A+ V +M +G + +P+++
Sbjct: 194 THDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 57.3 bits (138), Expect = 9e-10
Identities = 32/95 (33%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H+ LS GQ +RV+IA L+ ++LDEPT+GLDP ++R+ + G +I
Sbjct: 131 HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVI 190
Query: 121 ITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154
I++H I+ + ++ V ++R+G +L +P E+ A
Sbjct: 191 ISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 57.2 bits (138), Expect = 9e-10
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLH-----TPS--LVILDEPTSGLDPMLAHYFWQYLQRMS 113
R+ + LSGG+ +RV +A +L P+ L++LDEP + LD + L +
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 114 SNGQTIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
G I++++H + R A+ L+++G LLA EE++ L + +
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP---PVLAQAY 229
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 56.8 bits (137), Expect = 9e-10
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 45 RAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHY 104
R + EL + R LSGGQ +RV +A L PS+++LDEP +GLD
Sbjct: 100 RVGLTELAD--------RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151
Query: 105 FWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEEL 152
+ ++ G I++TTH + +A ++ G ++A+ +P++L
Sbjct: 152 LTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 57.0 bits (137), Expect = 1e-09
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ + + +A TL P +++LDEPTS LDP ++++ ++ II+T +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIAS 155
+ AR ++ L G L+ E E+L +S
Sbjct: 224 QAARISDRAALFFDGRLVEEGPTEQLFSS 252
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 57.7 bits (140), Expect = 1e-09
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSIAVTL 81
+ T+ E ++F+ ++ IS K++ L +V L + +TLSGG+ +R+ +A L
Sbjct: 790 DMTVEEAYEFFEAVPSISR-----KLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKEL 844
Query: 82 LHT---PSLVILDEPTSGLDPMLAHY-----FWQYLQRMSSNGQTIIITTHYIEEARQAN 133
+L ILDEPT+GL H+ + LQR+ G T+++ H ++ + A+
Sbjct: 845 SKRSTGRTLYILDEPTTGL-----HFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTAD 899
Query: 134 VV------GLMRKGVLLAEKSPEELI 153
+ G G ++A +PEE+
Sbjct: 900 YIIDLGPEGGDGGGTVVASGTPEEVA 925
Score = 46.9 bits (112), Expect = 4e-06
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 21 FDEFTIAETFQFYASLY------RISSE---EFRAKMKELQEV-LD-LPPDHRTCSTLSG 69
E +I E +F+ L +I+ E E R ++ L +V LD L R TLSG
Sbjct: 433 VSELSIREAHEFFNQLTLTPEEKKIAEEVLKEIRERLGFLIDVGLDYLSLS-RAAGTLSG 491
Query: 70 GQVRRVSIAVTL---LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
G+ +R+ +A + L T L +LDEP+ GL L+R+ G T+I+ H
Sbjct: 492 GEAQRIRLATQIGSGL-TGVLYVLDEPSIGLHQRDNRRLINTLKRLRDLGNTLIVVEHDE 550
Query: 127 EEARQAN-VVGLMRK-----GVLLAEKSPEELIASYGVDSLEEVFLR 167
+ R A+ V+ + G ++A +PEE++A+ DSL +L
Sbjct: 551 DTIRAADYVIDIGPGAGEHGGEVVASGTPEEILAN--PDSLTGQYLS 595
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 57.4 bits (139), Expect = 1e-09
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
TLSGGQ +R++IA +L +++LDE TS LD Q L+ + G+T +I H
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHR 534
Query: 126 IEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
+ +A+ + +M +G ++A+ + ELIA G
Sbjct: 535 LATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 55.4 bits (134), Expect = 2e-09
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQTIIIT 122
SGG+ +R+++A LL +V+LDEPT GLDP+ L ++ L+ +T+I
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-----DKTLIWI 153
Query: 123 THYIEEARQANVVGLMRKGVLLAE 146
TH++ + + + G ++ +
Sbjct: 154 THHLTGIEHMDKILFLENGKIIMQ 177
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 56.0 bits (135), Expect = 2e-09
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITT 123
+ LSGGQ +RV+IA L P +++ DE TS LDP L ++R++S T+++ T
Sbjct: 145 AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204
Query: 124 HYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
H + AR+ A+ V KG ++ + P+E+
Sbjct: 205 HEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 56.6 bits (137), Expect = 2e-09
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
I +PQE LF ++ E F + S ++ + + L LDL + +L
Sbjct: 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL---DSSAGSLEVA 144
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130
+ V I L+ ++ILDEPT+ L P + ++ + + G I+ +H + E R
Sbjct: 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIR 204
Query: 131 Q-ANVVGLMRKGVL-----LAEKSPEELIAS 155
Q A+ + +MR G + A+ S +++I +
Sbjct: 205 QLADRISVMRDGTIALSGKTADLSTDDIIQA 235
Score = 44.3 bits (105), Expect = 3e-05
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
TLSGG ++V IA L +P L+I+DEPT G+D + +Q ++ +++ ++ +
Sbjct: 403 TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
+EE Q A+ V +M +G + + +
Sbjct: 463 LEEIEQMADRVLVMHQGEISGALTGAAI 490
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 56.6 bits (136), Expect = 3e-09
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAK-MKELQEVLDLPPDHRTCSTLSG 69
I + Q AL T+ + F L I++EE R K + L++V H LSG
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSG 167
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHYIEE 128
G +RV +A L P ++++DE S LDP++ L ++ + Q TI+ +H ++E
Sbjct: 168 GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE 227
Query: 129 A-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
A R + + +M+ G ++ +P+E++ + D + F
Sbjct: 228 AMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFF 265
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 56.2 bits (136), Expect = 3e-09
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDH---RTCSTL 67
+G + Q AL+ ++AE F L EE ++ ++ EVL L H R L
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQL--AHLLDRKPKAL 134
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML 101
SGGQ +RV+I TL+ PS+ +LDEP S LD L
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 56.3 bits (136), Expect = 3e-09
Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 3/144 (2%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRTCSTL 67
+ GF+ Q L T A+ + A + ++ + +EL + L L +++ S L
Sbjct: 87 HFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP-SQL 145
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
SGGQ +RVSIA L++ +++ DEPT LD L ++ G T+II TH +
Sbjct: 146 SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205
Query: 128 EARQANVVGLMRKGVLLAEKSPEE 151
A QA V +R G ++ +E
Sbjct: 206 VAAQAERVIEIRDGEIVRNPPAQE 229
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 56.7 bits (137), Expect = 3e-09
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSG- 69
IG++ Q+ T+ E+ +F A L + S KM+ ++EV+ L + G
Sbjct: 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 70 -------GQVRRVSIAVTLLHTP-SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
Q +R++I V L+ P L+ LDEPTSGLD A + +++++ +GQ I+
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 122 TTH 124
T H
Sbjct: 958 TIH 960
Score = 34.3 bits (79), Expect = 0.067
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query: 21 FDEFTIAETFQFYASLYR-------ISSEEFRAKMKEL-QEVLDLPPDHRTCST------ 66
F T+ ET F A +S EE+ + ++ L H T +T
Sbjct: 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL--SH-TRNTKVGNDF 206
Query: 67 ---LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
+SGG+ +RVSIA L + D T GLD A F + L+ ++
Sbjct: 207 VRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN 257
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 54.8 bits (133), Expect = 3e-09
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD----PMLAHYFWQYLQRMSSNGQTIIIT 122
SGG+ +R I LL P L ILDEP SGLD ++A + + ++ G++++I
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA----EVINKLREEGKSVLII 160
Query: 123 THY--IEEARQANVVGLMRKGVLLAEKSPE 150
THY + + + + V ++ G ++ E
Sbjct: 161 THYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 55.2 bits (134), Expect = 4e-09
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 56 DLPPD--HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS 113
D D H++ LSGGQ +R+ IA L P ++++DEPTS LDP+ + + +
Sbjct: 137 DEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK 196
Query: 114 SNGQTIIITTHYIEEA 129
TI+I TH +++A
Sbjct: 197 KK-YTIVIVTHNMQQA 211
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 56.2 bits (136), Expect = 4e-09
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 11 IGFMPQETALFDEFTIAET---FQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC--- 64
IG++PQ+ LF T+AE F A +I A + EL +L LP + T
Sbjct: 394 IGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHEL--ILRLPDGYDTVIGP 450
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+TLSGGQ +R+++A L P LV+LDEP S LD ++ + + G T+++
Sbjct: 451 GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVI 510
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIA 154
TH + + +++ G + +E++A
Sbjct: 511 THRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 55.2 bits (133), Expect = 4e-09
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H + +LSGGQ +R+ IA TL P ++++DEP S LDP +A + L T+I
Sbjct: 144 HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLIEDLKKEYTVI 202
Query: 121 ITTHYIEEA-RQANVVGLMRKGVLLA--------EKSPEELIASY 156
I TH +++A R ++ G M G L+ E EEL +Y
Sbjct: 203 IVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEELTENY 247
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 53.7 bits (130), Expect = 4e-09
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 51 LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQ 110
L+E L P D LSGG+ +R++ A LLH P V LDE TS LD +Q L+
Sbjct: 80 LREQLIYPWDD----VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK 135
Query: 111 RMSSNGQTIIITTH 124
+ G T+I H
Sbjct: 136 EL---GITVISVGH 146
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 55.3 bits (133), Expect = 5e-09
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 3/147 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC-STLSG 69
IG + Q L T+ L +E + K+ EL ++ L H + S LSG
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSG 143
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA L P +++ DE TS LDP + L+ ++ G TI++ TH ++
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIA 154
++ + V ++ G L+ + + E+ +
Sbjct: 204 VKRICDCVAVISNGELIEQGTVSEIFS 230
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 54.4 bits (132), Expect = 5e-09
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY-LQRMSSNGQTIIITTH 124
LSGGQ +R+S+A + + +LD+P S +D + + ++ + + N +T I+ TH
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTH 186
Query: 125 YIEEARQANVVGLMRKG 141
++ A+ + ++ G
Sbjct: 187 QLQLLPHADQIVVLDNG 203
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 55.9 bits (135), Expect = 5e-09
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
S LSGGQ +R++IA L+ P ++ILDE TS LD + S +T+++ H
Sbjct: 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES---RSRASRTVLLIAH 672
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
+ +A+ + +++KG ++ + ++L+ G
Sbjct: 673 RLSTVERADQILVLKKGSVVEMGTHKQLMEDQGC 706
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 55.0 bits (132), Expect = 5e-09
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTI 119
H+ STLSGGQ +RV+IA L+ +++ DEP + LDP A L+ ++ N G T+
Sbjct: 147 HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV 206
Query: 120 IITTHYIEEA-RQANVVGLMRKG 141
++T H ++ A R + +R+G
Sbjct: 207 VVTLHQVDYALRYCERIVALRQG 229
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 54.7 bits (131), Expect = 6e-09
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
+ +LSGGQ +R+ IA TL P+++++DEPTS LDP+ + + + + TII
Sbjct: 145 NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES-YTII 203
Query: 121 ITTHYIEEA-RQANVVGLMRKGVLLAEKSPEEL 152
I TH +++A R ++ G + E S +EL
Sbjct: 204 IVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 54.7 bits (132), Expect = 6e-09
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 36 LYRISSEEFRAKMKELQEVLDLPPDH--RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEP 93
L + E A+ E+ +DL + LSGGQ++RV +A L P L+ILDE
Sbjct: 119 LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178
Query: 94 TSGLDPML 101
S LD +L
Sbjct: 179 VSNLDLVL 186
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 54.9 bits (132), Expect = 6e-09
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H LSGGQ +R+ IA L P ++++DEPTS LDP+ + +Q + + +II
Sbjct: 162 HDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKD-YSII 220
Query: 121 ITTHYIEEA 129
I TH +++A
Sbjct: 221 IVTHNMQQA 229
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 54.6 bits (132), Expect = 6e-09
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 6/127 (4%)
Query: 42 EEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM 100
+E R + E E L L R LSGGQ +R IA+ L V+LDEP + LD
Sbjct: 110 KEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMK 169
Query: 101 LAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGV 158
+ + L+R++ G+TI++ H I A ++ + ++ G ++ + SP+E+I
Sbjct: 170 HSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP--- 226
Query: 159 DSLEEVF 165
+ L E++
Sbjct: 227 EILSEIY 233
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 54.0 bits (130), Expect = 7e-09
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 60 DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI 119
+ R + LS GQ RRV++A LL L ILDEPT+ LD F + + + G +
Sbjct: 119 EDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMV 178
Query: 120 IITTH 124
++TTH
Sbjct: 179 VLTTH 183
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 54.3 bits (130), Expect = 7e-09
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H++ LSGGQ +R+ IA L P ++++DEP S LDP+ + +Q + N TI
Sbjct: 142 HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN-YTIA 200
Query: 121 ITTHYIEE-ARQANVVGLMRKGVLL 144
I TH +++ AR ++ G + G L+
Sbjct: 201 IVTHNMQQAARASDWTGFLLTGDLV 225
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 54.0 bits (130), Expect = 9e-09
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H + LSGGQ +RV IA L +P +++LDEPTS LDP+ A + L + + T++
Sbjct: 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTML 201
Query: 121 ITTHYIEEA-RQANVVGLMRKGVLL 144
+ T +++A R ++ G G L+
Sbjct: 202 LVTRSMQQASRISDRTGFFLDGDLI 226
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 55.1 bits (133), Expect = 9e-09
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLD----LPPDHRT-- 63
+I ++PQE +F +I E A S++ E+ E+ D +P ++T
Sbjct: 549 FINYLPQEPYIFSG-SILENLLLGAK--ENVSQDEIWAACEIAEIKDDIENMPLGYQTEL 605
Query: 64 ---CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
S++SGGQ +R+++A LL ++ILDE TS LD + L + +TII
Sbjct: 606 SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTII 663
Query: 121 ITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCH 170
H + A+Q++ + ++ G ++ + S +EL+ G + L H
Sbjct: 664 FVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNG------FYASLIH 707
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 54.2 bits (131), Expect = 9e-09
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 23 EFTIAETFQFYASLYRISSEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSIAVTL 81
+ T+ E +F+ ++ +I K++ L +V L + +TLSGG+ +R+ +A
Sbjct: 130 DMTVEEALEFFENIPKI-----ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA-KE 183
Query: 82 LHTPS----LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV-- 135
L S L ILDEPT+GL + LQR+ G T+++ H ++ + A+ +
Sbjct: 184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIID 243
Query: 136 ----GLMRKGVLLAEKSP 149
G G ++A +P
Sbjct: 244 LGPEGGDGGGQVVASGTP 261
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 54.2 bits (130), Expect = 9e-09
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H + +LSGGQ +R+ IA TL P++++LDEP S LDP+ + + + +II
Sbjct: 159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSII 217
Query: 121 ITTHYIEEA 129
I TH +++A
Sbjct: 218 IVTHNMQQA 226
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 54.2 bits (131), Expect = 9e-09
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 23 EFTIAETFQFYASLYRISSEEFRAKMK------ELQEVLDLPPDHRTCSTLSGGQVR-RV 75
E T E + ++ +E K+ EL + +D P +T S SG R
Sbjct: 103 ELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPV--KTYS--SGMYARLAF 158
Query: 76 SIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQA-NV 134
S+A + P +++LDE + D + L + +TI++ +H + +Q +
Sbjct: 159 SVATHV--EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDR 216
Query: 135 VGLMRKGVLLAEKSPEELIASY 156
+ G + E SPEE+I +Y
Sbjct: 217 AIWLEHGQIRMEGSPEEVIPAY 238
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 54.4 bits (132), Expect = 1e-08
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP-----MLAHYFWQYLQRMSSNGQTIII 121
LSGG+ RR+ IA LLH L++LDEPT GLD +L L + +T+++
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILE------LLAEHAQNKTVLM 529
Query: 122 TTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
TH + Q + + +M G ++ + + +EL+A G
Sbjct: 530 ITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 53.9 bits (129), Expect = 1e-08
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA L P L++LDEPTS LDP+ + + L+ +S N I++T +
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQ 202
Query: 127 EEARQANVVGLMRKGVLL 144
+ R A+ G L+
Sbjct: 203 QGKRVADYTAFFHLGELI 220
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 53.5 bits (129), Expect = 1e-08
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 48 MKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ 107
+ + +EVL P LSGG ++RV IA+ LL P +I DEPT+ LD + +
Sbjct: 112 LPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLK 166
Query: 108 YLQRM-SSNGQTIIITTHYIEE-ARQANVVGLMRKGVLLAEKSPEELI 153
L+ + G I++ TH + AR A+ V +M G ++ + +E+
Sbjct: 167 LLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 54.3 bits (131), Expect = 1e-08
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 48 MKELQEV-LDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
+ ++EV LD HR + SGGQ +R++IA L+ PSL+ILDEPTS LD
Sbjct: 406 IAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 47.4 bits (113), Expect = 3e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHY 125
LSGG+ +RV IA+ LL P L+I DEPT+ LD + Q L+ + ++ TH
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 126 IEEARQ-ANVVGLMRKG 141
+ R+ A+ V +M+ G
Sbjct: 217 LSIVRKLADRVAVMQNG 233
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 52.9 bits (127), Expect = 3e-08
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA + P+++++DEP S LDP+ + +Q + N TII+ TH +
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNF-TIIVVTHSM 208
Query: 127 EEARQ 131
++A++
Sbjct: 209 KQAKK 213
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 52.7 bits (126), Expect = 3e-08
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H + +LSGGQ +RV IA L P +++LDEPTS LDP+ + L + TII
Sbjct: 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTII 201
Query: 121 ITTHYIEEA 129
+ TH + +A
Sbjct: 202 LVTHSMHQA 210
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 52.7 bits (127), Expect = 3e-08
Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQF--------YASL-YRISSEEFRAKMKELQEVLDLPPD- 60
IG Q+ +F+ T+ E + +ASL R+ +EE R ++ EL + L +
Sbjct: 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEE-RRRIDELLATIGLGDER 141
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
R + LS GQ + + I + L P L++LDEP +G+ + L+ ++ +I+
Sbjct: 142 DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSIL 200
Query: 121 ITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
+ H + R+ A+ V ++ +G +LAE S +E+
Sbjct: 201 VVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 52.9 bits (127), Expect = 3e-08
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
R STLSGG+ +RV +A L P L++LDEPT+ LD ++ +++ G T++
Sbjct: 133 RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVA 192
Query: 122 TTHYIE-EARQANVVGLMRKGVLLAEKSP-----EELIAS-YGVDS 160
H + A + V ++ G ++A P LI + YGVD+
Sbjct: 193 ALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGVDA 238
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 53.4 bits (129), Expect = 3e-08
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDLP-PDHRTCS---TLSGGQVRRVSIAVTL 81
+AE +S RA+ EL E++ +P P+ R + LSGGQ +RV IA+ L
Sbjct: 116 LAEV---LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL 172
Query: 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMR 139
+ P L+I DEPT+ LD + L+ + + G I+ TH + R+ A+ V +M+
Sbjct: 173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232
Query: 140 KGVLLAEKSPEELIAS 155
G ++ + E L A+
Sbjct: 233 HGEIVETGTTETLFAA 248
Score = 51.1 bits (123), Expect = 2e-07
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 51 LQEV-LDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
L+EV LD +R SGGQ +R++IA L+ P L++LDEPTS LD
Sbjct: 410 LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 52.8 bits (127), Expect = 3e-08
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H++ TLSGGQ +R+ IA + P ++++DEP S LDP+ + + + N TII
Sbjct: 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN-YTII 216
Query: 121 ITTHYIEEARQA 132
I TH +++A +A
Sbjct: 217 IVTHNMQQAARA 228
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 52.4 bits (126), Expect = 3e-08
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
++ LSGGQ +R+ IA L P ++++DEPTS LDP+ + +Q + + TI+
Sbjct: 141 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKD-YTIV 199
Query: 121 ITTHYIEEA 129
I TH +++A
Sbjct: 200 IVTHNMQQA 208
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 52.3 bits (125), Expect = 4e-08
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 49 KELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY 108
KE ++ LD R SGGQ +R+ IA L P +V+LDEPTS LDP+ + +
Sbjct: 135 KETKDNLD-----RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189
Query: 109 LQRMSSNGQTIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEEL 152
L + T I+ TH +++A R ++ + G L+ EE+
Sbjct: 190 LMELKHQ-YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 52.6 bits (126), Expect = 4e-08
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ +A TL P +++LDEPTS LDP +Q + + TI+I TH +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS-YTIMIVTHNM 241
Query: 127 EEA-RQANVVGLMRKGVLLAEKSPEEL 152
++A R ++ +GVL+ +L
Sbjct: 242 QQASRVSDYTMFFYEGVLVEHAPTAQL 268
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 52.6 bits (127), Expect = 5e-08
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRA------KMKELQEVLDLPPDHRTCSTLSG 69
Q ALF T+ E F + + + E +M +L+E P LSG
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQ-----LSG 147
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA +++ P +++LDE S LD L L+ + G T + TH EE
Sbjct: 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEE 207
Query: 129 A-RQANVVGLMRKGVLLAEKSPEE 151
A ++ + +MR G + + +P E
Sbjct: 208 ALTMSDRIVVMRDGRIEQDGTPRE 231
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 51.7 bits (124), Expect = 5e-08
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 60 DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQT 118
+ R LSGG+ +RV++A L+ +++LDEP + LDP L + + + T
Sbjct: 122 EKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT 181
Query: 119 IIITTHYIEEAR 130
+++ TH E+A+
Sbjct: 182 VLMVTHQPEDAK 193
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 51.4 bits (123), Expect = 6e-08
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEF-RAKMKELQEVLDLPPDHRTCST--- 66
+ + Q ALF + T+ + F ++I + RA +L LP +
Sbjct: 79 VSYCAQTPALFGD-TVEDNLIF---PWQIRNRRPDRAAALDLLARFALP--DSILTKNIT 132
Query: 67 -LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP--------MLAHYF 105
LSGG+ +R+++ L P +++LDE TS LD M+ Y
Sbjct: 133 ELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 51.4 bits (123), Expect = 6e-08
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
IG + Q+ LF ++ + F + A L+ H+ +TLSGG
Sbjct: 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGG 138
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYL-QRMSSNGQTIIITTHYIEEA 129
Q RV++ LL P ++LDEP S LD L F Q++ + + G + TH +++
Sbjct: 139 QRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDV 198
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 51.5 bits (123), Expect = 7e-08
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
+LSGGQ +R+ IA TL P +++ DEPTS LDP+ + + + TI+I TH
Sbjct: 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKD-YTIVIVTHN 212
Query: 126 IEE-ARQANVVGLMRKGVLL 144
+++ AR ++ G G L+
Sbjct: 213 MQQAARISDYTGFFLMGELI 232
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 51.2 bits (123), Expect = 8e-08
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKE------LQEVLD-LPPDHRTCSTLS 68
QE LF T+A+ S + E R K++ L L LP LS
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG------ELS 131
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
GGQ +RV++A L+ +++LDEP S LDP L + ++ T+++ TH+ E
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191
Query: 128 EARQ 131
+A +
Sbjct: 192 DAAR 195
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 51.6 bits (124), Expect = 1e-07
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRR 74
Q ALF ++ E + + + EE + ++KE E++DL + R +SGGQ +R
Sbjct: 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQR 144
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-A 132
V++A L+ P +++ DEP S LD L + ++ + T + TH EA +
Sbjct: 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVS 204
Query: 133 NVVGLMRKGVLLAEKSPEEL 152
+ V +M KG ++ SP+EL
Sbjct: 205 DTVIVMNKGKIMQIGSPQEL 224
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 51.6 bits (124), Expect = 1e-07
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQE---VLDLPPDHRTCS-- 65
IG +PQ+T LF++ TIA ++ ++EE A + Q + LP + T
Sbjct: 339 IGIVPQDTVLFND-TIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395
Query: 66 ---TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LSGG+ +RV+IA T+L P ++ILDE TS LD L+ +S+ T++I
Sbjct: 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVI- 454
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
H + A+ + ++ G ++ + EEL+A+ G
Sbjct: 455 AHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 51.2 bits (122), Expect = 1e-07
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA + +PS++++DEP S LDP+ + + + TI+I TH +
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNM 205
Query: 127 EEA 129
++A
Sbjct: 206 QQA 208
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 50.0 bits (120), Expect = 1e-07
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIIT 122
+SGG+ +RVSIA L+ S++ D T GLD A + ++ M+ T ++
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVS 175
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 50.5 bits (121), Expect = 1e-07
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA L P ++++DEP S LDP+ + + + + TIII TH +
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR-YTIIIVTHNM 208
Query: 127 EE-ARQANVVGLMRKGVLLAEKSPEELI 153
++ AR ++V G L+ E P E I
Sbjct: 209 QQAARVSDVTAFFYMGKLI-EVGPTEQI 235
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 50.5 bits (121), Expect = 1e-07
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
S LSGGQ +RV+IA L+ P ++ILDE TS LD Q L +T+++ H
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPER-RTVLVIAH 207
Query: 125 YIEEARQANVVGLMRKGVL 143
+ +A+ + ++ G +
Sbjct: 208 RLSTVERADQILVLDGGRI 226
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 50.7 bits (121), Expect = 2e-07
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 38 RISSEEFRAKMKELQE-------VLDLPPD--HRTCSTLSGGQVRRVSIAVTLLHTPSLV 88
RI + + K++E+ E + D D H +LSGGQ +R+ IA L P ++
Sbjct: 118 RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
++DEPTS LDP+ + + ++ TI+I TH +++A
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKLKEK-YTIVIVTHNMQQA 217
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 50.3 bits (120), Expect = 2e-07
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
++ LSGGQ +R+ IA T+ P ++++DEPTS LDP+ + + TI+
Sbjct: 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIV 200
Query: 121 ITTHYIEEA-RQANVVGLMRKGVLLAEKSPEEL 152
I TH +++A R ++ G L+ E++
Sbjct: 201 IVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 50.7 bits (121), Expect = 2e-07
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 38 RISSEEFRAKMKE-LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSG 96
R + + R + L V + HR LSGGQ +RV +A + +++LDEP +G
Sbjct: 113 RRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTG 172
Query: 97 LDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASY 156
+D L+ + G+T++++TH + + +M KG +LA E ++
Sbjct: 173 VDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE---TTF 229
Query: 157 GVDSLEEVF 165
++LE F
Sbjct: 230 TAENLELAF 238
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 50.4 bits (121), Expect = 2e-07
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 13/72 (18%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM-------LAHYFWQYLQRMSSNGQ 117
+ LSGGQ +RV++A L+H P L++LDEP LD + L WQ +G
Sbjct: 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQ------QHGF 185
Query: 118 TIIITTHYIEEA 129
T+++ TH + EA
Sbjct: 186 TVLLVTHDVSEA 197
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 50.7 bits (122), Expect = 2e-07
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGG+ +R++IA LL P ++ILDE TS LD L + T II H
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII-AH 528
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEKGP 184
+ R A+ + + G ++ S +EL+A G F L Q E E K P
Sbjct: 529 RLSTVRNADRILVFDNGRVVESGSFDELVARGG------RFAALLRAQGMLQEDERRKQP 582
Query: 185 NKKG 188
+G
Sbjct: 583 AAEG 586
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 50.8 bits (122), Expect = 2e-07
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE--LQEVLDLPPD------HR 62
+ Q+ LFD T+ E + + EE A ++ L + L PD
Sbjct: 411 VSVCAQDAHLFDT-TVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLDTVLGE 467
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
+ LSGG+ +R+++A LL +++LDEPT LD
Sbjct: 468 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 504
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 50.1 bits (119), Expect = 2e-07
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 17 ETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVS 76
E L + +L I + + E L +S G R ++
Sbjct: 140 EILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLA 199
Query: 77 IAVTLL---HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ + LL SL+++DEP +GL P L + L+ +S G +I TTH
Sbjct: 200 LLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTH 250
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 49.8 bits (120), Expect = 2e-07
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-----DHRTCS 65
I ++PQ +F T+ E + R K E+ +L P R
Sbjct: 77 IAYVPQGREIFPRLTVEENLLTGLAALP------RRSRKIPDEIYELFPVLKEMLGRRGG 130
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTH 124
LSGGQ ++++IA L+ P L++LDEPT G+ P + + ++R+ + G I++
Sbjct: 131 DLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQ 190
Query: 125 YIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
Y++ AR+ A+ +M +G ++A + +EL
Sbjct: 191 YLDFARELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.0 bits (119), Expect = 3e-07
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA T+ P ++++DEP S LDP+ + ++ + TIII TH +
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK-YTIIIVTHNM 207
Query: 127 EEA 129
++A
Sbjct: 208 QQA 210
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 50.0 bits (120), Expect = 3e-07
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H++ +LSGGQ +R+ IA + P +++LDEP S LDP+ + + + + T++
Sbjct: 151 HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD-YTVV 209
Query: 121 ITTHYIEEA-RQANVVGLMRKGVLL 144
I TH +++A R ++ M G L+
Sbjct: 210 IVTHNMQQAARCSDYTAFMYLGELI 234
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.6 bits (118), Expect = 3e-07
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA T+ +P ++++DEP S LDP+ + ++ TI+I TH +
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNM 205
Query: 127 EEA 129
++A
Sbjct: 206 QQA 208
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 49.9 bits (120), Expect = 3e-07
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT-IIITT 123
+LSGG+ +RV+I LL P L+++DEP + LD YL+R++ I+ +
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVS 186
Query: 124 HYIEEA-RQANVVGLMRKGVLLAEKSPEELIAS 155
H ++E R A+ V ++ +G + A EE+ AS
Sbjct: 187 HSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 50.4 bits (120), Expect = 4e-07
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTI-IITT 123
S LSGGQ +R+SIA ++ P ++ILDE TS LD + + + + N I II
Sbjct: 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637
Query: 124 HYIEEARQANVV 135
H + R AN +
Sbjct: 638 HRLSTIRYANTI 649
Score = 42.7 bits (100), Expect = 1e-04
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNG-QTIIITTH 124
+LSGGQ +R++IA LL P +++LDE TS LD + + + +TII H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
Query: 125 YIEEARQANVVGLM----RKGVLL-AEKSPEELIA 154
I ++++ + + R G + A + EEL++
Sbjct: 1418 RIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 49.2 bits (118), Expect = 4e-07
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 39 ISSEEFRAKMKELQEVLDLPPDHRTCST---LSGGQVRRVSIAVTLLHTPSLVILDEPTS 95
+ +F +K +L + + S SGG+ +R I L P L ILDE S
Sbjct: 114 LDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173
Query: 96 GLDPMLAHYFWQYLQRMSSNGQTIIITTHY--IEEARQANVVGLMRKGVLLAEKSPE 150
GLD + + R+ ++ +I THY + + + V ++ G ++ E
Sbjct: 174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 49.6 bits (118), Expect = 4e-07
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
LSGGQ +R+ IA L P +++ DEPTS LDP+ + + + N TI+
Sbjct: 156 GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTIL 214
Query: 121 ITTHYIEE-ARQANVVGLMRKGVLL 144
I TH +++ AR ++ M G L+
Sbjct: 215 IVTHNMQQAARVSDYTAYMYMGELI 239
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 49.3 bits (118), Expect = 4e-07
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H LSGGQ +R+ IA + P +++LDEPTS LDP+ + + + S TI+
Sbjct: 163 HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK-YTIV 221
Query: 121 ITTHYIEE-ARQANVVGLMRKGVLL 144
I TH +++ AR ++ M G L+
Sbjct: 222 IVTHNMQQAARVSDYTAFMYMGKLV 246
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 49.9 bits (120), Expect = 4e-07
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGGQ +R+ IA L+ PS++ILDE TS LDP L+R G T II H
Sbjct: 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAH 670
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
+ R + + ++ +G ++ + EEL A G
Sbjct: 671 RLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGA 704
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 49.8 bits (119), Expect = 5e-07
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRR 74
Q+ AL T+ E F + + E R ++ E E++ L R LSGG +R
Sbjct: 113 QQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQR 172
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEA-RQA 132
V +A ++++DEP S LDP++ L + S +TI+ +H ++EA +
Sbjct: 173 VGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALKIG 232
Query: 133 NVVGLMRKGVLLAEKSPEELIAS 155
N + +M G ++ +PEE++ +
Sbjct: 233 NRIAIMEGGRIIQHGTPEEIVLN 255
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 48.9 bits (116), Expect = 5e-07
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 49 KELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY 108
KE+ + L+ P S LSGGQ +R++IA L P ++++DEPTS +D + + +
Sbjct: 141 KEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL 195
Query: 109 LQRMSSNGQTIIITTHYIEE-ARQANVVGLMRKGVLLAEKSPEELIAS 155
+ + N I+I +H ++ AR A+ V + G L+ S E+ S
Sbjct: 196 ITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 49.0 bits (117), Expect = 5e-07
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
+LSGGQ +R+ IA + P ++++DEP S LDP+ + + + TIII TH
Sbjct: 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHN 209
Query: 126 IEEA 129
+++A
Sbjct: 210 MQQA 213
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 49.0 bits (117), Expect = 6e-07
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
+LSGGQ +R+ IA T+ P ++++DEP S LDP+ + + + N TI+I TH
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN-FTIVIVTHN 212
Query: 126 IEEA 129
+++A
Sbjct: 213 MQQA 216
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 47.4 bits (114), Expect = 6e-07
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 7/60 (11%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFW--QYLQRMSSNGQTIIITTH 124
LSGG+ R+++A LL P+L++LDEPT+ LD L + L+ G T+I+ +H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD--LESIEALEEALK--EYPG-TVILVSH 125
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 48.9 bits (117), Expect = 6e-07
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 12 GFMPQETALFDEFTIAETFQFYASLYRISSE--EFRAKMKELQEVLDLPPDH---RTCST 66
+PQ ++L FT+ E Q +R E E + DL R T
Sbjct: 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL--SGLAGRDYRT 135
Query: 67 LSGGQVRRVSIAVTL--LH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
LSGG+ +RV +A L L + + LDEPTS LD H+ + ++++ G ++
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195
Query: 121 ITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
H + A Q A+ + L+ +G ++A SP++++ ++LE V+
Sbjct: 196 AVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD---ETLERVY 238
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 48.8 bits (116), Expect = 7e-07
Identities = 33/113 (29%), Positives = 65/113 (57%), Gaps = 11/113 (9%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS----SNGQ 117
++ TLSGGQ +R IA+ L ++++LDEPT+ LD ++H L+ +S G
Sbjct: 139 QSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQI-DLLELLSELNREKGY 195
Query: 118 TIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLC 169
T+ H + +A R A+ + +R+G ++A+ +P+E++ + + +E ++ C
Sbjct: 196 TLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA---ELIERIYGLRC 245
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 49.2 bits (118), Expect = 8e-07
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGG+ +R++ A LLH P V LDE TS LD +Q L+ T+I H
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVISVGH 572
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 47.9 bits (114), Expect = 8e-07
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TII 120
R LSGGQ +RV++A L+ +++LDEP S LDP+L ++++ S Q T++
Sbjct: 124 RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLL 183
Query: 121 ITTHYIEEAR 130
+ TH++ +AR
Sbjct: 184 MVTHHLSDAR 193
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 48.3 bits (115), Expect = 8e-07
Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 17/159 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQ---FYASLYRISSEEFRAKMKELQEVLDLPP-----DHR 62
+ +P+ +F T+ E F+A ++F+ ++K V +L P +
Sbjct: 82 VAIVPEGRRVFSRMTVEENLAMGGFFAE-----RDQFQERIKW---VYELFPRLHERRIQ 133
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
T+SGG+ + ++I L+ P L++LDEP+ GL P++ + ++++ G TI +
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 123 THYIEEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDS 160
+A + A+ ++ G ++ E + + L+A+ V S
Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRS 232
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 48.7 bits (116), Expect = 1e-06
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LS Q +R++IAV L+ PS++ +DEPTSGLD A + ++ G+T++ T H
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 47.9 bits (114), Expect = 1e-06
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 56 DLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN 115
DLP SGG +R+ IA L+ P LV +DEPT GLD + L+ + +
Sbjct: 144 DLP------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 116 -GQTIIITTHYIEEAR 130
G +II TH + AR
Sbjct: 198 LGLAVIIVTHDLGVAR 213
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 47.7 bits (113), Expect = 1e-06
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TI 119
H++ LSGGQ +R+ IA L P ++++DEP GLDP+ + +Q + + T+
Sbjct: 145 HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTM 204
Query: 120 IITTH 124
+I +H
Sbjct: 205 VIVSH 209
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 48.3 bits (115), Expect = 1e-06
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHY 125
L+ G+ ++V IA+ L + P L+I DEPT+ ++P ++ L R++ N TI++ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
++ Q A+ + ++ G + EEL+
Sbjct: 219 LQMISQWADKINVLYCGQTVESAPSEELVTM 249
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 47.6 bits (113), Expect = 1e-06
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 50 ELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYF 105
E+++ LD P LSGGQ +R+ IA L P +++ DEPT+ LDP + F
Sbjct: 135 EVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLF 189
Query: 106 WQYLQRMSSNGQTIIITTHYIEE-ARQANVVGLMRKGVLLAEKSPEEL 152
+ + M TI++ TH+ ++ AR ++ V + KG ++ E+
Sbjct: 190 LELKKDM-----TIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 48.0 bits (115), Expect = 1e-06
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 40 SSEEFRAKMKELQEVLDLPPDH--RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
S+ E R K + + L P+H R SGGQ +R++IA L+ P +V+ DEP S L
Sbjct: 126 SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL 185
Query: 98 D 98
D
Sbjct: 186 D 186
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 48.3 bits (115), Expect = 1e-06
Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 11/158 (6%)
Query: 15 PQETALFDEFTIAETFQF----YASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
PQ+T+L EF + + + + S + +E RA ++ E + R ++LSG
Sbjct: 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSG 142
Query: 70 GQVRRVSIAVTLLH-TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE- 127
G+ +RV +A L TP L +LDEPT+ LD + ++R+ +G+T + H ++
Sbjct: 143 GERQRVLLARALAQATPVL-LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201
Query: 128 EARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
AR + + L+ G + A P +++ + D+L F
Sbjct: 202 AARYCDELVLLADGRVRAAGPPADVLTA---DTLRAAF 236
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 47.9 bits (114), Expect = 1e-06
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA + P ++++DEP S LDP+ ++ ++ T++I TH +
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM 239
Query: 127 EEA 129
++A
Sbjct: 240 QQA 242
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 47.9 bits (114), Expect = 2e-06
Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTIIITTHY 125
L+ G+ ++V IA+ L + P L+I DEPT+ ++P ++ L R++ +N TI++ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
++ Q A+ + ++ G + +EL+ +
Sbjct: 219 LQMLSQWADKINVLYCGQTVETAPSKELVTT 249
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 47.4 bits (113), Expect = 2e-06
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 16 QETALFDEFTIAETFQFYASLYRISSEEFRAKMKE-LQEVLDLPPDHRTCSTLSGGQVRR 74
Q AL + + F L I + R + L V +H+ LSGG +R
Sbjct: 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140
Query: 75 VSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEEA 129
V IA L P L++LDEP LD + + L + G+ +++ TH IEEA
Sbjct: 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA 196
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 48.3 bits (116), Expect = 2e-06
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 65 STLSGGQVRRVSIAVTLLHTPS----LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
+TLSGG+ +RV +A L S L ILDEPT+GL + L R+ G T+I
Sbjct: 821 TTLSGGEAQRVKLA-KELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVI 879
Query: 121 ITTHYIEEARQANVV------GLMRKGVLLAEKSPEELIAS 155
+ H ++ + A+ + G G ++A +PEE+
Sbjct: 880 VIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920
Score = 39.9 bits (94), Expect = 0.001
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 21 FDEFTIAETFQFYASLYRISSEEFRAK--MKELQEVLD---------LPPDHRTCSTLSG 69
E +IA+ +F+ +L E+ A+ +KE++E L L R+ TLSG
Sbjct: 426 ISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLS-RSAGTLSG 484
Query: 70 GQVRRVSIAVTL---LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
G+ +R+ +A + L T L +LDEP+ GL + L+R+ G T+I+ H
Sbjct: 485 GEAQRIRLATQIGSGL-TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 48.1 bits (115), Expect = 2e-06
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 36 LYRISSEEFRAKMKELQEVLDLP------PDHRTCSTLSGGQVRRVSIAVTLLHTPSLVI 89
+Y+ S+ + ++ ++L + P H +LS GQ R I L+ P+L+I
Sbjct: 369 IYQAVSDRQQKLAQQWLDILGIDKRTADAPFH----SLSWGQQRLALIVRALVKHPTLLI 424
Query: 90 LDEPTSGLDPMLAHYFWQYLQRMSSNGQT-IIITTHYIEEA 129
LDEP GLDP+ +++ + S G+T ++ +H+ E+A
Sbjct: 425 LDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465
Score = 40.4 bits (95), Expect = 5e-04
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII-ITTHY 125
LS G+ R+ + L+ P L+ILDEP GLD + L + +G T++ + +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195
Query: 126 IEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPE 181
E G++ L EE++ + + +L H + PE
Sbjct: 196 DEIPDFVQFAGVLADCTLAETGEREEILQ-------QALVAQLAHSEQLEGVQLPE 244
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 47.0 bits (112), Expect = 2e-06
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 39 ISSEEFRAKMKELQEVLDLP-PDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
+ + ++ + + L + R LSGGQ +RV IA L P L++LDEP L
Sbjct: 100 VEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159
Query: 98 DPMLAHYFWQYLQRM-SSNGQTIIITTHYIEEA 129
D L ++ G+ +++ TH IEEA
Sbjct: 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 46.8 bits (111), Expect = 3e-06
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
S LSGGQ +R+ IA L P ++++DEPT+ +DP+ + L + TI++ TH
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTH 206
Query: 125 Y-IEEARQANVVGLMRKGVLL 144
+ AR ++ V + G L+
Sbjct: 207 SPAQAARVSDYVAFLYLGKLI 227
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 47.6 bits (113), Expect = 3e-06
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGG+ +R++IA +L +++LDE TS LD + + N T II H
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII-AH 528
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
+ R A++V + +G L+ + S +ELI G
Sbjct: 529 RLSTVRNADLVLFLDQGRLIEKGSFQELIQKDG 561
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 46.9 bits (111), Expect = 3e-06
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
+LSGGQ +R+ IA + P +++LDEP S LDP+ + + + + TI + TH
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD-YTIALVTHN 207
Query: 126 IEEARQ 131
+++A +
Sbjct: 208 MQQAIR 213
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 45.8 bits (109), Expect = 3e-06
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 49 KELQEVLD-----LPPDHRTCSTLSGGQVRRVSIAVTLL--HTPSLVILDEPTSGLDPML 101
+LQ ++D L + STLSGG+++RV +A L +L ILDEP++GL
Sbjct: 66 DQLQFLIDVGLGYLTLG-QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124
Query: 102 AHYFWQYLQRMSSNGQTIIITTH 124
+ + ++ + G T+I+ H
Sbjct: 125 INQLLEVIKGLIDLGNTVILIEH 147
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 45.8 bits (109), Expect = 3e-06
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 63 TCSTLSGGQVRRVSIAVTL---LHTP-SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT 118
T LSGG+ ++A+ L P L ILDE GLDP + + G
Sbjct: 74 TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQ 133
Query: 119 IIITTHY 125
+I+ TH
Sbjct: 134 VIVITHL 140
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 47.3 bits (113), Expect = 3e-06
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ +R+ IA L+ P +++ DE TS LD + L+R+ T I+ H
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV---TRIVIAH 643
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQ 172
+ R A+ + ++ G ++ + + +EL+A G +F +L +Q
Sbjct: 644 RLSTIRNADRIYVLDAGRVVQQGTYDELMAREG------LFAQLARRQ 685
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 46.3 bits (110), Expect = 3e-06
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 51 LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQ 110
L E D P LSGG +RV+IA L P +++LDEP LD + + L
Sbjct: 104 LTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158
Query: 111 RM-SSNGQTIIITTHYIEEA 129
++ + T+++ TH ++EA
Sbjct: 159 QIWEEHRVTVLMVTHDVDEA 178
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 46.7 bits (111), Expect = 3e-06
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
H + LSGGQ +R+ IA + +P ++++DEP S LDP+ + + + N TI+
Sbjct: 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN-YTIV 216
Query: 121 ITTHYIEEA 129
I TH +++A
Sbjct: 217 IVTHSMQQA 225
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.5 bits (110), Expect = 3e-06
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA L P ++++DEPTS LDP + + TIII TH +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV-TTIIIVTHNM 207
Query: 127 EE-ARQANVVGLMRKGVLLAEKSPEELIAS 155
+ AR ++ G L+ ++L +
Sbjct: 208 HQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 47.3 bits (113), Expect = 4e-06
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 20/77 (25%)
Query: 41 SEEFRAKMKELQEVLD-------------------LPPDHRTCSTLSGGQVRRVSIAVTL 81
SE+ ++ +LQE LD L PD S LSGG +R+ ++ L
Sbjct: 113 SEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSS-LSGGWLRKAALGRAL 171
Query: 82 LHTPSLVILDEPTSGLD 98
+ P +++LDEPT+ LD
Sbjct: 172 VSNPDVLLLDEPTNHLD 188
Score = 36.5 bits (85), Expect = 0.010
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 51 LQEVLDLPPDHRT-CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LQ+ L P T LSGG+ R+ +A L +L+ILDEPT+ LD
Sbjct: 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 46.2 bits (109), Expect = 4e-06
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ--YLQRMSSNGQTIIITTH 124
LSGGQ +R+ +A L ++V LD+P S LD L+ + Q L+ + + +T+++ TH
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200
Query: 125 YIEEARQANVVGLMRKG 141
++ A+ + M+ G
Sbjct: 201 KLQYLPHADWIIAMKDG 217
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 46.6 bits (111), Expect = 4e-06
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD--HRTCSTLSGGQVRRVSIAVTLLH 83
IAE + Y ++S +E + ++K + + L P+ +R SGGQ +R+ IA L+
Sbjct: 121 IAEPLRTYHP--KLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALIL 178
Query: 84 TPSLVILDEPTSGLD 98
P L+I DEP S LD
Sbjct: 179 EPKLIICDEPVSALD 193
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 46.6 bits (110), Expect = 4e-06
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGGQ +R+ IA + P ++++DEPTS LDP+ + + + +III TH
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK-YSIIIVTH 282
Query: 125 YIEEARQ 131
+ +A++
Sbjct: 283 SMAQAQR 289
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 46.2 bits (109), Expect = 5e-06
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA L P ++++DEP S LDP+ + + + S TI I TH +
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNM 209
Query: 127 EEA 129
++A
Sbjct: 210 QQA 212
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 46.9 bits (111), Expect = 5e-06
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRA-KMKELQEVLDLPPDHRTCS---- 65
+ ++PQ + +F+ T+ E F S + S +RA + LQ LDL P
Sbjct: 681 VAYVPQVSWIFNA-TVRENILF-GSDFE-SERYWRAIDVTALQHDLDLLPGRDLTEIGER 737
Query: 66 --TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123
+SGGQ +RVS+A + + I D+P S LD +AH + + G+T ++ T
Sbjct: 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT 797
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
+ + + + L+ +G++ E + EL S
Sbjct: 798 NQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829
Score = 33.8 bits (77), Expect = 0.10
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
S GQ + +S+A LL +++LDE T+ +D + Q R T+++ H
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVD-VRTDSLIQRTIREEFKSCTMLVIAHR 1429
Query: 126 IEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQA 175
+ + + ++ G +L SP+EL++ F R+ H A
Sbjct: 1430 LNTIIDCDKILVLSSGQVLEYDSPQELLSRDT-----SAFFRMVHSTGPA 1474
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 46.4 bits (110), Expect = 5e-06
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R+ IA L P ++++DEP S LDP+ ++ ++ T+++ TH +
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNM 259
Query: 127 EEA 129
++A
Sbjct: 260 QQA 262
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 46.6 bits (111), Expect = 6e-06
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ--TIIITTH 124
LSGGQ +R+SIA LL ++ILD+ S +D H Q L + G+ T+II+ H
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH---QILHNLRQWGEGRTVIISAH 508
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
+ +A+ + +M+ G + + ++L G
Sbjct: 509 RLSALTEASEILVMQHGHIAQRGNHDQLAQQSG 541
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 45.9 bits (110), Expect = 8e-06
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 39 ISSEEFRAKMKELQEVLDLPPDHRTC--STLSGGQVRRVSIAVTLLHTPSLVILDEPTSG 96
E +A++ EL E++ L D + LSGGQ +RV+IA L P +++ DE TS
Sbjct: 112 TPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 97 LDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154
LDP + L+ ++ G TI++ TH ++ ++ + V ++ G L+ +
Sbjct: 171 LDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ-------- 222
Query: 155 SYGVDSLEEVFLR 167
++ EVF
Sbjct: 223 ----GTVSEVFSH 231
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 44.7 bits (107), Expect = 8e-06
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGG ++V +A L P ++ILDEPT G+D ++ ++ ++ G+ +++ + +
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164
Query: 127 EEARQ-ANVVGLMRKG 141
+E + + +M +G
Sbjct: 165 DELLGLCDRILVMYEG 180
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 45.1 bits (107), Expect = 9e-06
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 27/107 (25%)
Query: 15 PQETALFDEFTIAETFQFYASLYRISS---------------EEFRAKMKEL-------Q 52
P+E TI QF + R+S+ E RA+ +EL +
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE 140
Query: 53 EVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
+ LPP +T SGG+ +RV+IA + +++LDEPT+ LD
Sbjct: 141 RLWHLPP-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 44.9 bits (107), Expect = 1e-05
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 56 DLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
DLP +T SGG +R+ IA L+ P LV +DEPT GLD
Sbjct: 147 DLP------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 44.6 bits (106), Expect = 1e-05
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 18/124 (14%)
Query: 16 QETALFDEFTIAET--FQFYASLYRISSEEFRAKMKE------LQEVLD-LPPDHRTCST 66
QE LF T+A+ L ++++ + R K+ ++++L LP
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGL-KLNAAQ-REKLHAIARQMGIEDLLARLP------GQ 129
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHY 125
LSGGQ +RV++A L+ +++LDEP S LDP L + ++ Q T+++ +H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189
Query: 126 IEEA 129
+E+A
Sbjct: 190 LEDA 193
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 45.5 bits (108), Expect = 1e-05
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 3 ATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYR-------ISSEEFRAKMKELQEVL 55
A LG IG + QE ++ DE T+ E L + I E R + + +
Sbjct: 77 AAQLG---IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 56 DLPPDHRT-CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
L D + LS + + IA TL+ ++I+DEPTS L Y + + ++
Sbjct: 134 GLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK 193
Query: 115 NGQTIIITTHYIEEARQ 131
G I+ +H + E R+
Sbjct: 194 EGTAIVYISHKLAEIRR 210
Score = 38.6 bits (90), Expect = 0.002
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 21/138 (15%)
Query: 7 GSTYIGFMPQETALFDEFTIAETFQFYASL--------YRISSEEFRAKMKELQ-EVLDL 57
G YI ++ F F+IA+ SL + E + E Q E+L L
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL 398
Query: 58 PPDHRTCST-------LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQ 110
C + LSGG ++V I+ L P ++I DEPT G+D ++ ++
Sbjct: 399 -----KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 111 RMSSNGQTIIITTHYIEE 128
+++ +G+ I++ + + E
Sbjct: 454 QLADDGKVILMVSSELPE 471
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 44.7 bits (106), Expect = 2e-05
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 50 ELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYL 109
E+++ LD P LSGGQ +R+ IA + P ++++DEP S LDP+ +
Sbjct: 137 EVKDRLDKPG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLI 191
Query: 110 QRMSSNGQTIIITTHYIEEA 129
+ + TI+I TH +++A
Sbjct: 192 NELKQD-YTIVIVTHNMQQA 210
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 44.5 bits (105), Expect = 2e-05
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGG+ +RV IA +++ P++++ DEPT LD L+ + + + G T+++ TH
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 44.3 bits (105), Expect = 2e-05
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+ +RV +A LL+ P L++LDEPT G+D
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 45.1 bits (107), Expect = 2e-05
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 46 AKMK-ELQEVLDL----PPDHRT-CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
++MK + Q V+D P HRT +LSGG ++V I LL P +++LDEPT G+D
Sbjct: 365 SRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424
Query: 100 MLAHYFWQYLQRMSSNGQTIII 121
+Q + ++ + III
Sbjct: 425 GAKFEIYQLIAELAKKDKGIII 446
Score = 38.2 bits (89), Expect = 0.003
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 55 LDLPPDHRT-CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS 113
LD+ D R +TLS Q++ + IA + +VI+DEPTS L ++ + ++++
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 114 SNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
G I+ +H +EE Q + + ++R G +A + L
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 44.4 bits (105), Expect = 2e-05
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 56 DLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN 115
DLP T SGG +R+ IA L+ P LV +DEPT GLD + L+ +
Sbjct: 147 DLP------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200
Query: 116 -GQTIIITTHYIEEAR-QANVVGLMRKG 141
G ++I TH + AR A+ + +M++G
Sbjct: 201 LGLAVVIVTHDLAVARLLADRLMVMKQG 228
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 44.8 bits (107), Expect = 2e-05
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 45 RAKMKELQEVLDLPP--DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
R K+ E+ E L L D R S LSGG+++RV+IA LL DEPTS LD
Sbjct: 190 RGKLDEVVERLGLENILD-RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
Score = 43.6 bits (104), Expect = 5e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+++RV+IA L L +LDEP++ LD
Sbjct: 452 KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 44.2 bits (104), Expect = 2e-05
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGGQ +R+ IA + P ++++DEP S LDP+ + + TII+ TH
Sbjct: 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTIIMVTH 218
Query: 125 YIEEA 129
+++A
Sbjct: 219 NMQQA 223
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 43.8 bits (104), Expect = 2e-05
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 25 TIAETFQFYASLYRISSEEFRAKMKELQEV-LD-LPPDHRTCSTLSGGQVRRVSIAVTLL 82
T+ E + + L+ + R ++ L +V L L R+ TLSGG+ +R+ +A T +
Sbjct: 97 TVTEIYDYLRLLF--ARVGIRERLGFLVDVGLGYLTLS-RSAPTLSGGEAQRIRLA-TQI 152
Query: 83 H---TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
T L +LDEP+ GL P + L+R+ G T+++ H
Sbjct: 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 43.1 bits (102), Expect = 5e-05
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHY 125
LSGGQ + +S+ + LH P +++LDE T+ LDP A + + ++ + T ++ TH
Sbjct: 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN 208
Query: 126 IEEA 129
+E+A
Sbjct: 209 MEDA 212
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 43.7 bits (103), Expect = 6e-05
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS----TLSGGQVRRVSIAVTL 81
IAE+ + + R EE + K + + + +P S LSGG +RV IA+ L
Sbjct: 127 IAESIRLHQGASR---EEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMAL 183
Query: 82 LHTPSLVILDEPTSGLDPMLAHYFWQY---LQRMSSNGQTIIITTH 124
P+++I DEPT+ LD + Q LQ+ S G +I TH
Sbjct: 184 SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFITH 227
Score = 41.0 bits (96), Expect = 4e-04
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 42 EEFRAKMKELQEVLDLPPDH--RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
+ A++ L E + L P+H R SGGQ +R+ IA L P ++I DE S LD
Sbjct: 437 KAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 42.8 bits (102), Expect = 6e-05
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 24/167 (14%)
Query: 14 MPQETAL-FDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQ 71
+PQ ++L F FT+ E + + +S E A + +DL R LSGG+
Sbjct: 81 LPQHSSLSFP-FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGE 139
Query: 72 VRRVSIAVTLL------HTPSLVILDEPTSGLDPMLAHYFWQYL------QRMSSNGQTI 119
+RV +A L P ++LDEPTS LD LAH Q+ Q G +
Sbjct: 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD--LAH---QHHVLRLARQLAHERGLAV 194
Query: 120 IITTHYIE-EARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
I+ H + AR A+ + L+ +G L+A+ +P E++ ++L V+
Sbjct: 195 IVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP---ETLRRVY 238
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 42.2 bits (99), Expect = 6e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+++RV+IA LL + + DEP++ LD
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 43.2 bits (102), Expect = 7e-05
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQV 72
+ Q A +E + Y ++ L V+ + R TLSGG+
Sbjct: 765 LLAQIEAEANEILSKLSLNRYDLRRLTIRKDGN---GGLVVVVYDGGEVRPIKTLSGGER 821
Query: 73 RRVSIA--------VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
S+A + L+ LDEP LD + L+ + S+G+ III +H
Sbjct: 822 FLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISH 881
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 42.5 bits (100), Expect = 8e-05
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 58 PPDHRTCSTLSGGQVRRVSIAVTL--LH-------TPSLVILDEPTSGLDPMLAHYFWQY 108
R +TLSGG++ RV A L L P ++LDEPT+ LD H
Sbjct: 137 ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT 196
Query: 109 LQRMSSNGQTIIIT-THYIE-EARQANVVGLMRKGVLLAEKSPE-----ELIAS-YGV 158
++R++ + ++ H AR A+ + ++ G ++A +P IA YG
Sbjct: 197 VRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCYGF 254
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 42.4 bits (100), Expect = 8e-05
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 39 ISSEEFRAKMKELQEVLDLPPD--HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSG 96
+ E RAK +L L+LP +T SGG+ +RV+IA + +++LDEPT+
Sbjct: 123 VPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182
Query: 97 LD 98
LD
Sbjct: 183 LD 184
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 42.4 bits (100), Expect = 9e-05
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 45 RAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
R K+ EL + L+L R LSGG+++RV+IA L DEP+S LD
Sbjct: 117 RGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 42.0 bits (99), Expect = 1e-04
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 48 MKELQ--EVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
K LQ ++LD R LSGG+++RV+IA L + +LDEP++ LD
Sbjct: 100 AKPLQIEQILD-----REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 41.8 bits (99), Expect = 1e-04
Identities = 35/123 (28%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 33 YASL-YRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRRVSIAVTLLHTPSLVIL 90
+ASL +R+S+EE + +++E+ E + L + R LS GQ + + I + L+ P L++L
Sbjct: 109 FASLFFRLSAEE-KDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLL 167
Query: 91 DEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSP 149
DEP +G+ + L+ ++ ++++ H +E R A+ V ++ +G +LAE S
Sbjct: 168 DEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226
Query: 150 EEL 152
+++
Sbjct: 227 DQV 229
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 42.3 bits (100), Expect = 1e-04
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 50 ELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
L+ VLD R S LSGG+++RV+IA LL + DEP+S LD
Sbjct: 202 GLENVLD-----RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+++RV+IA L L +LDEP++ LD
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 42.3 bits (100), Expect = 1e-04
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ +R++IA LL ++ILDE TS LD L + N +T ++ H +
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRL 539
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
+A+ + ++ G ++ + EL+A GV
Sbjct: 540 STIEKADEILVVEDGEIVERGTHAELLAQNGV 571
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 41.4 bits (98), Expect = 1e-04
Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 12 GFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMK------ELQEVLDLPPDHRTCS 65
GF P E T E L +S +E K+ EL + +DLP
Sbjct: 94 GFNP-------ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLP-----VK 141
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
T S G R++ A+ P ++++DE + D + L+ + G+T+I+ +H
Sbjct: 142 TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201
Query: 126 IEEARQ-ANVVGLMRKGVLLAE 146
++ + ++ KG + +
Sbjct: 202 PSSIKRLCDRALVLEKGKIRFD 223
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 42.0 bits (99), Expect = 1e-04
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT-IIITTH 124
SGG +RV IA+ LL P L+I DEPT+ LD + L + T II+ TH
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 41.9 bits (99), Expect = 2e-04
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGG ++V+IA L+ P ++ILDEPT G+D +Q + + + G +II+ + +
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM 455
Query: 127 EEARQANVVGL------MRKGVLLAEKSPEE 151
E V+G+ M +G + E + E+
Sbjct: 456 PE-----VLGMSDRILVMHEGRISGEFTREQ 481
Score = 41.1 bits (97), Expect = 3e-04
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 11 IGFMPQETALFDEFTIAETF----QFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCS 65
IG + QE L + TIAE +F RI ++ A+ +L L+L +
Sbjct: 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG 140
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
LS G+ + V IA L ++I+DEPT L ++ ++ + S G+ I+ +H
Sbjct: 141 ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR 200
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
++E + + V + R G +AE+ +L
Sbjct: 201 LKEIFEICDDVTVFRDGQFIAEREVADL 228
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
R L+ GQ RR+ IA ++ P +++LDEP +GL+P
Sbjct: 149 RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 41.8 bits (98), Expect = 2e-04
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 31 QFYASLYRISSEEFRAKMKELQEVLDLPPD--HRTCSTLSGGQVRRVSIAVTLLHTPSLV 88
+ Y L I + A+ + L P+ + T SGG R+++A L P L+
Sbjct: 307 EIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLL 366
Query: 89 ILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+LDEPT+ LD + YL + +T I+ +H
Sbjct: 367 LLDEPTNHLDLHAVLWLETYLLKWP---KTFIVVSH 399
Score = 38.3 bits (89), Expect = 0.003
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
TLSGGQ RV+ A P +++LDEP++ LD
Sbjct: 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 40.9 bits (96), Expect = 2e-04
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 6 LGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP--DHRT 63
L + ++GF+ Q L E + A L SS + R K L E L L DH
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP 144
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIIT 122
+ LSGG+ +RV++A P ++ DEPT LD L ++ G T+I+
Sbjct: 145 -AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILV 203
Query: 123 TH 124
TH
Sbjct: 204 TH 205
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 41.3 bits (97), Expect = 3e-04
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 23/157 (14%)
Query: 11 IGFMPQETALFDEFTIAETF------------QFYASLYRISSEEFRAK--MKELQEVLD 56
I + QE L E ++AE Y ++Y RAK ++ELQ LD
Sbjct: 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL------RAKNLLRELQ--LD 131
Query: 57 LPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNG 116
R GGQ + V IA L L+ILDEP+S L ++ + ++G
Sbjct: 132 ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHG 191
Query: 117 QTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
+ +H + E + + + ++R G +A K +
Sbjct: 192 VACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228
Score = 37.9 bits (88), Expect = 0.004
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGG ++ +A LL P ++ILDEPT G+D + ++ + +++ G II+ + +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463
Query: 127 EE 128
E
Sbjct: 464 AE 465
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 40.9 bits (96), Expect = 3e-04
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 43 EFRAKMKELQEVLDLPPDHRTCST---LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
+F+ M+E +L +P D T S SGG+ +R I + P L ILDE SGLD
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 100 MLAHYFWQYLQRMSSNGQTIIITTHY 125
+ + ++ II THY
Sbjct: 179 DALKIVADGVNSLRDGKRSFIIVTHY 204
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 40.5 bits (95), Expect = 3e-04
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC---STL 67
+GF+ Q L T E L SS + RA K L E + L R + L
Sbjct: 90 VGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGL--GKRLTHYPAQL 147
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
SGG+ +RV++A P ++ DEPT LD
Sbjct: 148 SGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 40.2 bits (95), Expect = 3e-04
Identities = 32/147 (21%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 11 IGFMPQETALF--------DEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHR 62
I +PQ+ LF D F + + +L R+ +EF + LD +
Sbjct: 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGG---LDTVVEEG 136
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LS GQ + + +A LL +++LDE T+ +DP + ++ + T++
Sbjct: 137 GEN-LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKD-CTVLTI 194
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSP 149
H ++ ++ + ++ KG ++ SP
Sbjct: 195 AHRLDTIIDSDRILVLDKGRVVEFDSP 221
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 40.7 bits (95), Expect = 5e-04
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLA-HYFWQYLQRMSS-NGQTIIITTH 124
LSGGQ +RVS+A + + + D+P S +D + H F + +T I+ TH
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTH 820
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEP---- 180
I Q +V+ +M G + S +EL+ G + E FLR Q E
Sbjct: 821 GISYLPQVDVIIVMSGGKISEMGSYQELLQRDG--AFAE-FLRTYAPDEQQGHLEDSWTA 877
Query: 181 -EKGPNKKGL 189
G K+
Sbjct: 878 LVSGEGKEAK 887
Score = 32.6 bits (74), Expect = 0.19
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LS GQ + V +A LL +++LDE T+ +D + Q R T++ H +
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVD-LETDNLIQSTIRTQFEDCTVLTIAHRL 1480
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
V ++ KG + +P L+ G+
Sbjct: 1481 NTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGI 1512
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 39.5 bits (93), Expect = 6e-04
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQTII 120
ST S ++ ++ + SLV+LDE SG DP+ LA + L G +I
Sbjct: 90 STFSS-HMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELL---ERGALVI 145
Query: 121 ITTHYIE 127
TTHY E
Sbjct: 146 ATTHYGE 152
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 39.7 bits (93), Expect = 7e-04
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTHY 125
+SGG ++R+ IA+ LL +I DEPT+ LD + L+ + +++ TH
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200
Query: 126 IE-EARQANVVGLMRKGVLLAEKSPEELIA 154
+ AR A+ V +M G ++ + E L
Sbjct: 201 MGVVARLADDVAVMSHGRIVEQGDVETLFN 230
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 39.0 bits (91), Expect = 0.001
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG +RV IA+ + P L+I DEPT+ LD
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 39.4 bits (92), Expect = 0.001
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ-YLQRMSSNGQTIIITTH- 124
LS GQ +R+++ + LL +++LDE + DP F+Q L + G+TI +H
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508
Query: 125 --YIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
Y A + + MR G L E +
Sbjct: 509 DHYFIHADR---LLEMRNGQLSELTGEERDETA 538
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 39.2 bits (92), Expect = 0.001
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 50 ELQEVLDLPPDHRTCST-LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQ- 107
++ L+L D R + LS GQ +R+++ + L +++LDE + DP F+Q
Sbjct: 433 KMAHKLELE-DGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 108 YLQRMSSNGQTIIITTH---YIEEARQANVVGLMRKGVL 143
L + G+TI +H Y A+ + MR G L
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFI---HADRLLEMRNGQL 527
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 39.0 bits (91), Expect = 0.001
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITT 123
S LSGG RR ++A + P L++ DEP G DP+ + + ++S G T ++ +
Sbjct: 142 SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS 201
Query: 124 HYIEE----ARQANVVGLMRKGVLLAEKSPEEL 152
H + E A A +V + ++A S + L
Sbjct: 202 HDVPEVLSIADHAYIVADKK---IVAHGSAQAL 231
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 39.1 bits (91), Expect = 0.002
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 66 TLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSN 115
+LSGG+ RV++A L + SL+I+DEPT+ LD L +Y + SS+
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDII-EYSLKDSSD 859
Query: 116 GQTIIITTHYIEEARQANV 134
+I+ +H+ E A+V
Sbjct: 860 IPQVIMISHHRELLSVADV 878
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 38.6 bits (90), Expect = 0.002
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 50 ELQEVLDLPPDHRTCS------TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAH 103
LQ LDL P +SGGQ +RVS+A + + I D+P S LD +
Sbjct: 718 ALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777
Query: 104 YFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
+ + G+T ++ T+ + Q + + L+ +G++ E + EEL +
Sbjct: 778 QVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 38.4 bits (90), Expect = 0.003
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 22/95 (23%)
Query: 16 QETALFDEFTIAETFQF------------YASLYRISSEEFRAKMKELQEV-LDLPPDHR 62
QE AL E ++ E F Y ++Y RA+ K L ++ LD+ P
Sbjct: 89 QELALVKELSVLENI-FLGNEITPGGIMDYDAMYL------RAQ-KLLAQLKLDINPATP 140
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
L GQ + V IA L L+ILDEPT+ L
Sbjct: 141 V-GNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
Score = 37.2 bits (87), Expect = 0.006
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG ++ +A LL P ++ILDEPT G+D
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 38.2 bits (89), Expect = 0.003
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGG+ +R+++A H P ILDE TS + + Y ++ + G T+ +H
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSH 637
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 37.9 bits (89), Expect = 0.003
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 28/95 (29%)
Query: 26 IAETFQFYASLY----------------RISSEEFR------AKMKELQEVLDLPPDHRT 63
IA FQ YA LY + E A++ EL+ +LD P
Sbjct: 78 IAMVFQNYA-LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP---- 132
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGGQ +RV++ ++ P++ + DEP S LD
Sbjct: 133 -RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 38.0 bits (89), Expect = 0.003
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 16 QETALFDEFTIAETF---QFYASLYRISSEEFRAK-MKELQEV-LDLPPDHRTCSTLSGG 70
QE L E T+AE Q ++ + ++L+ + +D+ PD LS G
Sbjct: 86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-KYLSIG 144
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEE 128
Q + V IA L ++ DEPTS L ++ ++ + + G+ I+ +H +EE
Sbjct: 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE 202
Score = 28.0 bits (63), Expect = 5.4
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
LSGG ++ + L +++LDEPT G+D H + + +++ G ++ +
Sbjct: 396 NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD 455
Query: 126 IEEARQANVVGL------MRKGVLLAEKSPEE 151
+ E V+G+ MR+G + E + E+
Sbjct: 456 LPE-----VLGVADRIVVMREGRIAGELAREQ 482
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 37.9 bits (88), Expect = 0.003
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMS-SNGQTII 120
R S LS GQ R +A L P+++++DE + LD + A + + ++ G T+I
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 121 ITTHYIEEARQ 131
+ TH E
Sbjct: 563 VVTHRPEVGNA 573
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 36.2 bits (83), Expect = 0.006
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 33 YASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDE 92
+ I E+ E+ + L L ++ SG R+++A+ P ++ILDE
Sbjct: 30 GGGVIYIDGEDILE---EVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86
Query: 93 PTSGLDP------MLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANV 134
TS LD +L L S T+I+TT+ ++ A +
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALL 134
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 36.5 bits (85), Expect = 0.006
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
SGG+ +R I L L ILDE SGLD + + ++ ++ +II+ THY
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 34.5 bits (80), Expect = 0.006
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 61 HRTCSTLSGGQVRRVSIAVTLL-------------HTPSLVILDEPTSGLDP 99
R TLSGG+ ++V + L P L+ LDE + LD
Sbjct: 17 SRDSGTLSGGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDE 67
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 37.2 bits (86), Expect = 0.007
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 36 LYRISSEEFR----AKMKELQEVLDLPPDHRTCS------TLSGGQVRRVSIAVTLLHTP 85
++ +S +E+R K +L+E + L P+ TLSGGQ R+S+A +
Sbjct: 508 IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDA 567
Query: 86 SLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRKGV 142
L +LD P + LD + F L ++ SN +T I+ T +E ++A+ + L+ +GV
Sbjct: 568 DLYLLDSPFTHLDVVTEKEIFESCLCKLMSN-KTRILVTSKLEHLKKADKILLLHEGV 624
Score = 34.5 bits (79), Expect = 0.053
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LS G + + +A ++L +++LDEP++ LDP+ + L++ SN T+I++ H +
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC-TVILSEHRV 1412
Query: 127 E 127
E
Sbjct: 1413 E 1413
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 36.1 bits (83), Expect = 0.008
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 50 ELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYL 109
L+ ++D P C LS GQ R+V++ + L +LDEP LD + +
Sbjct: 116 SLEHLIDYP-----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170
Query: 110 QRMSSNGQTIIITTH 124
Q + G +++T+H
Sbjct: 171 QEHRAKGGAVLLTSH 185
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 36.4 bits (84), Expect = 0.008
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
S GQ + +A + S++I+DE T+ +D M Q + + +T++ H +
Sbjct: 157 FSVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVVMTAFADRTVVTIAHRV 215
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLR 167
A++V ++ +G+L+ +PE L+A D + +R
Sbjct: 216 STILDADLVLVLSRGILVECDTPENLLAQE--DGVFASLVR 254
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 36.6 bits (86), Expect = 0.009
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 24/109 (22%)
Query: 66 TLSGGQVRRVSIAVTLLHTPS----LVILDEPTSGLDPMLAHY-----FWQYLQRMSSNG 116
TLSGG+ +RV +A L S L ILDEPT+GL H+ + L R+ G
Sbjct: 830 TLSGGEAQRVKLA-KELSKRSTGKTLYILDEPTTGL-----HFEDIRKLLEVLHRLVDKG 883
Query: 117 QTIIITTHYIEEARQANVV------GLMRKGVLLAEKSPEELIA---SY 156
T+++ H ++ + A+ + G G ++A +PEE+ SY
Sbjct: 884 NTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 36.0 bits (83), Expect = 0.013
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 42 EEFRAKMKELQEVLDLPPDHRTC--STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD- 98
E+ R ++ E ++ L PDH L+ GQ +RV++A L+ P ++I DE + LD
Sbjct: 123 EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
Query: 99 PMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYG 157
M + L+ G + I T +I + ++ V +M +G ++ S +++A
Sbjct: 183 SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA--- 239
Query: 158 VDSLEEVFLRL 168
L E+ RL
Sbjct: 240 -SPLHELTKRL 249
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 36.2 bits (84), Expect = 0.015
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 53 EVLDLPPDHR--TCSTLSGGQVRRVSIAV---TLLHTPS-LVILDEPTSGLDPMLAHYFW 106
E+ PP + + S LSGG+ ++A+ + P+ +LDE + LD
Sbjct: 1051 EISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVA 1110
Query: 107 QYLQRMSSNGQTIIIT 122
+ ++ MS Q I+IT
Sbjct: 1111 RLIKEMSKETQFIVIT 1126
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 35.7 bits (82), Expect = 0.018
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFW-QYLQRMSSNGQTIII 121
T + LS GQ +R+++ L +++ DE + DP +F+ + L + G+TIII
Sbjct: 467 TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIII 526
Query: 122 TTH---YIEEARQ 131
+H Y E A Q
Sbjct: 527 ISHDDQYFELADQ 539
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 35.9 bits (83), Expect = 0.020
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LSGGQ RVS+A + + +LD+P S LD + + + G+T ++ TH +
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 127 EEARQANVVGLMRKG 141
+A+ V + G
Sbjct: 843 HVVPRADYVVALGDG 857
Score = 29.0 bits (65), Expect = 3.3
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVIL-DEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123
S S GQ + + +A LL S IL DE T+ +DP L Q + + T+I
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSAFSAYTVITIA 1502
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELI 153
H + Q + + +M G + SP EL+
Sbjct: 1503 HRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 34.9 bits (81), Expect = 0.023
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 53 EVLDLPPDHRTCSTLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDP-MLAHYF 105
E D R SGG+ + R+++A T ++ LDEPT+ LD +
Sbjct: 104 ESNWPLLDMRG--RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL 161
Query: 106 WQYLQRMSS--NGQTIIITTHYIEEARQA 132
+ ++ S N Q I+IT EE A
Sbjct: 162 AEIIEERKSQKNFQLIVITHD--EELVDA 188
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 35.1 bits (81), Expect = 0.030
Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LS GQ + +++A L+ TP ++ILDE T+ +D Q L + + T+++ H
Sbjct: 475 NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAH 533
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
+ +A+ + ++ +G + + + ++L+A+ G
Sbjct: 534 RLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 35.0 bits (81), Expect = 0.030
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 67 LSGGQVRRVSIAV---TLLHTPS-LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LSGG+ ++A+ P+ ILDE + LD F L+ S N Q I+IT
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVIT 1149
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 34.4 bits (79), Expect = 0.037
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPML-AHYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD F + ++ +N +T I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN-KTRILVTS 217
Query: 125 YIEEARQANVVGLMRKG 141
+E ++A+ + ++ +G
Sbjct: 218 KMEHLKKADKILILHEG 234
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 33.9 bits (78), Expect = 0.052
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+ +R+S+ L P +++LDE TS LD
Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 33.6 bits (77), Expect = 0.070
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 67 LSGGQVRRVSIAVTLL--HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LS G +R +++A LL P L++LDEP + L P L + ++ + Q +I++TH
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ-VIVSTH 329
Query: 125 YIEEARQ 131
Sbjct: 330 SPRLLNA 336
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 33.3 bits (76), Expect = 0.082
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
LS GQ +R+++A L L +LDEP + LD
Sbjct: 138 LSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 33.2 bits (76), Expect = 0.093
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ + ILDEP + L P L+ ++ +G III TH
Sbjct: 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 32.9 bits (75), Expect = 0.10
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
LS G + + +A ++L +++LDEP++ LDP+ + L + + T+I++ H I
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRI 197
Query: 127 E 127
E
Sbjct: 198 E 198
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 33.3 bits (77), Expect = 0.11
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQTII 120
ST SG V I + SLV+ DE +G DP LA +YL++ G II
Sbjct: 389 STFSGHMTNIVRI-LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKII 444
Query: 121 ITTHYIE 127
TTHY E
Sbjct: 445 ATTHYKE 451
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 33.3 bits (76), Expect = 0.11
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 65 STLSGGQVRRVSIAVTLLHTP--SLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQT 118
ST SG +I+ L T SLV+ DE +G DP LA +YL + ++
Sbjct: 384 STFSG---HMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNA---Q 437
Query: 119 IIITTHYIE 127
++ITTHY E
Sbjct: 438 VLITTHYKE 446
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 33.2 bits (76), Expect = 0.11
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
SGG+ R+ +A+ + P+L++LDEPT+ LD
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
Score = 32.1 bits (73), Expect = 0.26
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 52 QEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR 111
E L+ P S SGG R+++A L+ L++LDEPT+ LD L W L++
Sbjct: 140 NEQLERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIW--LEK 190
Query: 112 -MSSNGQTIIITTH 124
+ S T+I+ +H
Sbjct: 191 WLKSYQGTLILISH 204
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 32.4 bits (75), Expect = 0.12
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 65 STLSGGQVRRVSIAV---TLLHTPS-LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTII 120
S LSGG+ ++A+ PS +LDE + LD F + L+ S Q I+
Sbjct: 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIV 171
Query: 121 ITTH---YIEEARQANVVGLMRKGV 142
I TH +E A + V + GV
Sbjct: 172 I-THRKGTMEAADRLYGVTMQESGV 195
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 32.0 bits (73), Expect = 0.18
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LS GQ + + +A LL P +++LDE T+ +D Q R TI+ H
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASID-YATDALIQKTIREEFTNSTILTIAH 182
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 31.8 bits (72), Expect = 0.24
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 9 TYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMK--ELQEVLDLPPDHRTCST 66
TYIG L E T+ E +F++ +Y S+E A + +L ++LD C +
Sbjct: 73 TYIG---HNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLD-----EKCYS 123
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LS G + V+IA + L +LDE + L
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 31.0 bits (70), Expect = 0.46
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 86 SLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
L+I++ P + L P L +++ G +++ TH
Sbjct: 262 YLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETH 300
>gnl|CDD|226121 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD
family [DNA replication, recombination, and repair].
Length = 581
Score = 30.8 bits (70), Expect = 0.66
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 85 PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQAN---VVGLMRKG 141
P++++++EP + L P L W L + Q I+TTH A+ + L+R
Sbjct: 302 PNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQ-RIVTTHSPHLLSLADLDSICRLVRVS 360
Query: 142 VLLAEKSP 149
+A
Sbjct: 361 SRVAAFQL 368
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 30.8 bits (70), Expect = 0.73
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 86 SLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQTIIITTHYIE-EARQANVVGLM 138
SLV+ DE SG DP LA + L I+ TTHY E +A A G+
Sbjct: 397 SLVLFDELGSGTDPDEGAALAIAILEDLL---EKPAKIVATTHYRELKALAAEREGVE 451
>gnl|CDD|220594 pfam10136, SpecificRecomb, Site-specific recombinase. Members of
this family of bacterial proteins are found in various
putative site-specific recombinase transmembrane
proteins.
Length = 647
Score = 30.6 bits (70), Expect = 0.80
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 214 IAAMSLVQFVIYGQPYGNFW----------LSYVLINFIGFT 245
IA +L++F++Y FW LS+VLI+ + FT
Sbjct: 342 IAFTALLKFLLYALHLAPFWEGLLASLNYALSFVLIHLLHFT 383
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 30.1 bits (68), Expect = 0.90
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 39 ISSEEFRAKMKELQEVLDLPPDHRTC--STLSGGQVRRVSIAVTLLHTPSLVILDEPTSG 96
+ E+ ++ E + L PDH + L+ GQ +R+ +A L+ P ++I DE +
Sbjct: 120 LEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALAS 179
Query: 97 LD 98
LD
Sbjct: 180 LD 181
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 28.8 bits (65), Expect = 1.8
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 67 LSGGQVRRVSIAVTL-LH--TPS-LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LSGG+ ++A+ L PS +LDE + LDP ++ M+ + I+
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 123 TH 124
T
Sbjct: 155 TL 156
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.6 bits (66), Expect = 2.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 67 LSGGQVRRVSIAVTL-LH----TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
LSGG+ V++A+ + P +LDE + LD YL+ +S N Q I+I
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAP-FYLLDEIDAALDDQNVSRVANYLKELSKNAQFIVI 1137
Query: 122 T 122
+
Sbjct: 1138 S 1138
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating
ATPases with the cadmium-translocating species. This
model and that describing the copper-ATPases
(TIGR01511) are well separated, and thus we further
type the copper-ATPases as IB1 and the cadmium-ATPases
as IB2. Several sequences which have not been
characterized experimentally fall just below trusted
cutoff for both of these models (SP|Q9CCL1 from
Mycobacterium leprae, GP|13816263 from Sulfolobus
solfataricus, OMNI|NTL01CJ01098 from Campylobacter
jejuni, OMNI|NTL01HS01687 from Halobacterium sp.,
GP|6899169 from Ureaplasma urealyticum and OMNI|HP1503
from Helicobacter pylori) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 536
Score = 29.2 bits (66), Expect = 2.2
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD 60
M +LG+ IG + L F+I ET + YAS + L+ +++L PD
Sbjct: 5 MALAALGAVAIGEYLEGALLLLLFSIGETLEEYAS---------GRARRALKALMELAPD 55
Query: 61 HRTCSTLSGGQVRRVSI 77
L GG + V++
Sbjct: 56 TAR--VLRGGSLEEVAV 70
>gnl|CDD|173872 cd08507, PBP2_SgrR_like, The C-terminal solute-binding domain of
DNA-binding transcriptional regulator SgrR is related to
the ABC-type oligopeptide-binding proteins and contains
the type 2 periplasmic-binding fold. A novel family of
SgrR transcriptional regulator contains a two-domain
structure with an N terminal DNA-binding domain of the
winged helix family and a C-terminal solute-binding
domain. The C-terminal domain shows strong homology with
the ABC-type oligopeptide-binding protein family, a
member of the type 2 periplasmic-binding fold protein
(PBP2) superfamily that also includes the C-terminal
substrate-binding domain of LysR-type transcriptional
regulators. SgrR (SugaR transport-related Regulator) is
negatively autoregulated and activates transcription of
divergent operon SgrS, which encodes a small RNA
required for recovery from glucose-phosphate stress.
Hence, the small RNA SgrS and SgrR, the transcription
factor that controls sgrS expression, are both required
for recovery from glucose-phosphate stress. Most of
periplasmic binding proteins are comprised of only two
globular subdomains corresponding to domains I and III
of the dipeptide/oligopeptide binding proteins. The
structural topology of these domains is most similar to
that of the type 2 periplasmic binding proteins (PBP2),
which are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 448
Score = 28.8 bits (65), Expect = 2.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 86 SLVILDEPTSGLDPMLAHYFWQYL 109
LV DE ++P LAH+ W+
Sbjct: 38 GLVRYDEENGEIEPDLAHH-WESN 60
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 28.0 bits (63), Expect = 3.4
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 15/62 (24%)
Query: 74 RVSIAVTLLHTPSLVILDEPTSGLDPM--------LAHYFWQYLQRMSSNGQTIIITTHY 125
+ ++L SLV++DE G + + + R + TH+
Sbjct: 98 ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRT-------LFATHF 150
Query: 126 IE 127
E
Sbjct: 151 HE 152
>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR) and similar proteins.
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of
stem cell factor receptor (SCFR). In addition to SCFR
this group also includes the fourth Ig domain of
platelet-derived growth factor receptors (PDGFR), alpha
and beta, the fourth Ig domain of macrophage colony
stimulating factor (M-CSF), and the Ig domain of the
receptor tyrosine kinase KIT. SCFR and the PDGFR alpha
and beta have similar organization: an extracellular
component having five Ig-like domains, a transmembrane
segment, and a cytoplasmic portion having protein
tyrosine kinase activity. SCFR and its ligand SCF are
critical for normal hematopoiesis, mast cell
development, melanocytes and gametogenesis. SCF binds to
the second and third Ig-like domains of SCFR, this
fourth Ig-like domain participates in SCFR dimerization,
which follows ligand binding. Deletion of this fourth
SCFR_Ig-like domain abolishes the ligand-induced
dimerization of SCFR and completely inhibits signal
transduction. PDGF is a potent mitogen for connective
tissue cells. PDGF-stimulated processes are mediated by
three different PDGFs (PDGF-A,-B, and C). PDGFR alpha
binds to all three PDGFs, whereas the PDGFR beta, binds
only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta,
are essential for normal development.
Length = 101
Score = 26.9 bits (60), Expect = 4.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 99 PMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMR 139
P H W Y R +N T I+T+ E R + + L+R
Sbjct: 31 PPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVR 71
>gnl|CDD|197224 cd09126, PLDc_C_DEXD_like, C-terminal putative phospholipase D-like
domain of uncharacterized prokaryotic HKD family
nucleases fused to DEAD/DEAH box helicases. C-terminal
putative phospholipase D (PLD)-like domain of
uncharacterized prokaryotic HKD family nucleases fused
to a DEAD/DEAH box helicase domain. All members of this
subfamily are uncharacterized. In addition to the
helicase-like region, members of this family also
contain a PLD-like domain in the C-terminal region,
which is characterized by a variant HKD (H-x-K-x(4)-D
motif, where x represents any amino acid residue) motif.
Due to the lack of key residues related to PLD activity
in the variant HKD motif, members of this subfamily are
most unlikely to carry PLD activity.
Length = 126
Score = 27.2 bits (61), Expect = 4.1
Identities = 7/37 (18%), Positives = 22/37 (59%)
Query: 104 YFWQYLQRMSSNGQTIIITTHYIEEARQANVVGLMRK 140
Y + + ++ ++III++ Y+ + R ++ L+++
Sbjct: 9 YEEVFRKDLAQAKKSIIISSPYVSQKRITKLINLLKE 45
>gnl|CDD|216351 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. The Ady2
protein in is required for acetate in Saccharomyces
cerevisiae, and is probably an acetate transporter. A
homologue in Yarrowia lipolytica (GPR1) has a role in
acetic acid sensitivity.
Length = 210
Score = 28.0 bits (63), Expect = 4.1
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 229 YGNFWLSYVLINFIGFTGI 247
YG FWLS+ I FI GI
Sbjct: 85 YGAFWLSFAAI-FIPSFGI 102
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 27.9 bits (63), Expect = 4.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 74 RVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYL-QRMSSNGQTIIITTH 124
RV +A L P +++LDEPT+ LD + L +R S T+II +H
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNS----TMIIISH 210
Score = 27.9 bits (63), Expect = 6.1
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGG+ R+ ++ P+++++DEPT+ +D
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 27.5 bits (62), Expect = 5.6
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 86 SLVILDEPTSGLDPM----LAHYFWQYLQRMSSNGQTIIITTHYIE 127
SLV+LDE G +A +YL + G + THY E
Sbjct: 80 SLVLLDELGRGTSTYDGLAIAAAILEYL--LEKIGARTLFATHYHE 123
>gnl|CDD|189004 cd09597, M4_neutral_protease, Peptidase M4 family includes
thermolysin, protealysin, aureolysin and neutral
protease. This peptidase M4 family includes several
endopeptidases such as thermolysin (EC 3.4.24.27),
aureolysin (the extracellular metalloproteinase from
Staphylococcus aureus), neutral protease from Bacillus
cereus and protealysin. These enzymes have a two-domain
structure with the active site between the domains. The
N-terminal domain contains the HEXXH zinc-binding motif
while the helical C-terminal domain, which is unique for
the family, carries the third zinc ligand. Most of these
secreted proteases degrade extracellular proteins and
peptides for bacterial nutrition, especially prior to
sporulation. They have N-terminal propeptides that
assist in folding and are removed autocatalytically.
Thermolysin is widely used as a nonspecific protease to
obtain fragments for peptide sequencing. It has also
been used in production of the artificial sweetener
aspartame.
Length = 280
Score = 27.6 bits (62), Expect = 6.3
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 217 MSLVQFVIYGQPYGN-FW 233
M LV V YG Y N FW
Sbjct: 65 MKLVSRVHYGSNYDNAFW 82
Score = 26.9 bits (60), Expect = 9.2
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 103 HYFWQYLQRMS--SNGQTIIITTHY 125
++ R S NG ++ HY
Sbjct: 49 DFYKDVFGRNSIDGNGMKLVSRVHY 73
>gnl|CDD|222198 pfam13526, DUF4125, Protein of unknown function (DUF4125).
Length = 181
Score = 27.2 bits (61), Expect = 6.7
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 117 QTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEV 164
+T+ + Y+E + KG LAE++ E L+ YG DSLEE
Sbjct: 140 KTLDLYLEYVERLQ--------EKGRNLAEETYENLVRMYGYDSLEEA 179
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 27.4 bits (61), Expect = 7.4
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 87 LVILDEPTSGLDPMLAHYFWQYLQRMSS-NGQTIIITTH 124
++++DEP + L P L ++L++++ N + IIITTH
Sbjct: 277 ILLIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTH 315
>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic
MutS5 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 213
Score = 27.3 bits (61), Expect = 7.6
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 62 RTCSTLSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDP-----MLAHYFWQYLQ 110
+ ++S GQ + +VS A+ L SLV++DE G D +L L+
Sbjct: 80 SSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLK 139
Query: 111 RMSSNGQTIIITTHYIE 127
R +I++TH+ E
Sbjct: 140 R-GPECPRVIVSTHFHE 155
>gnl|CDD|129812 TIGR00729, TIGR00729, ribonuclease H, mammalian HI/archaeal HII
subfamily. This enzyme cleaves RNA from DNA-RNA
hybrids. Archaeal members of this subfamily of RNase H
are designated RNase HII and one has been shown to be
active as a monomer. A member from Homo sapiens was
characterized as RNase HI, large subunit [DNA
metabolism, DNA replication, recombination, and repair].
Length = 206
Score = 27.0 bits (60), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 126 IEEARQANVVGLMRKGVLLAEKSPEELIASYGVD 159
I+EA + V+G + GV E+ EE + GV
Sbjct: 4 IDEAGRGPVIGPLVVGVFAIEEKREEELRKLGVK 37
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 27.3 bits (61), Expect = 8.3
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 15/76 (19%)
Query: 67 LSGGQ------VRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNG 116
LSGG+ R+++++ L L+ILDEPT LD L +YL+++
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQ-- 846
Query: 117 QTIIITTHYIEEARQA 132
+II +H EE + A
Sbjct: 847 --VIIVSHD-EELKDA 859
>gnl|CDD|213241 cd03274, ABC_SMC4_euk, ATP-binding cassette domain of eukaryotic
SMC4 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 212
Score = 26.9 bits (60), Expect = 9.1
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 14/67 (20%)
Query: 65 STLSGGQVRRVSIA-VTLLH----TPSLVILDEPTSGLD----PMLAHYFWQYLQRMSSN 115
S LSGG+ S+A V LH TP L ++DE + LD ++A+Y ++ + N
Sbjct: 126 SNLSGGEKTLSSLALVFALHHYKPTP-LYVMDEIDAALDFRNVSIVANY----IKERTKN 180
Query: 116 GQTIIIT 122
Q I+I+
Sbjct: 181 AQFIVIS 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.402
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,217,946
Number of extensions: 1302512
Number of successful extensions: 2124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1883
Number of HSP's successfully gapped: 436
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)