RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4634
(249 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 177 bits (451), Expect = 2e-55
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
I ++P+E + E +F A Y SS E ++ E+ L ST S
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 149
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G VR++ IA L+ P L ILDEPTSGLD + A + L++ S G TI++++H + E
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 209
Query: 130 RQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
+ + L+ G ++ + EEL Y ++EEVF +
Sbjct: 210 EFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV 249
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 137 bits (348), Expect = 2e-40
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
I F+P+E + + ++ + + ASLY + + ++ + E +++ + LS G
Sbjct: 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK--NEIMDALESVEVLDLKKKLGELSQG 137
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEEA 129
+RRV +A TLL + +LD+P +D H + + + G II + +
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY- 196
Query: 130 RQANVVGLMRKGVLLAEK 147
+V + K +K
Sbjct: 197 --CDVNENLHKYSTKIDK 212
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 109 bits (275), Expect = 5e-29
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 9 TYIGFMPQETAL-FDEFTIAETF---QFYAS--LYRISSEEFRAKMKELQEVLDLPPDH- 61
+IGF+ F E + S +Y+ +E R + +L +++ +
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM--SAK 154
Query: 62 --RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-- 117
+ LS G+ +RV IA L+ P ++ILDEP +GLD + L +S +
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214
Query: 118 TIIITTHYIEEARQA-NVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
+I TH+IEE + + L++ G + + + E+++ S +++ F
Sbjct: 215 AMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS---ENMSRFF 260
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 98.0 bits (245), Expect = 9e-25
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 4/144 (2%)
Query: 41 SEEFRAKMKELQEVLDLPPDH---RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
+ +K+ E + L D R LSGG+ RRV+IA ++H P ++ILDEP GL
Sbjct: 110 DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 98 DPMLAHYFWQYLQRMSSNGQTIIITTHYIEE-ARQANVVGLMRKGVLLAEKSPEELIASY 156
D + +++ + G+T+I+ +H IE + V ++ KG + + + E + Y
Sbjct: 170 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
Query: 157 GVDSLEEVFLRLCHQQNQAIEAEP 180
L + + +
Sbjct: 230 DPRFFTSKMLVMRRLVLKGEDPFS 253
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 91.8 bits (229), Expect = 2e-22
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 15/138 (10%)
Query: 39 ISSEEFRAKMKE------LQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDE 92
+ +E R ++ ++ + D P LS GQ +RV+IA L+ P ++ILDE
Sbjct: 115 LPEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 93 PTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE-ARQANVVGLMRKGVLLAEKSPE 150
PT+GLDPM + L M G TIII TH I+ + V +M++G ++ + +P+
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 151 ELIASYGVDSLEEVFLRL 168
E+ A + + +V LRL
Sbjct: 230 EVFAE--KEVIRKVNLRL 245
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 83.9 bits (208), Expect = 2e-19
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD--HRTCSTL 67
Y +P+ + T+ + Y L + R E+ + L L + R L
Sbjct: 76 YSTNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKL 129
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
S GQ V ++ L P +V LDEP +D H +Y++ G+ I+ TH ++
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELD 186
Query: 128 EARQAN--VVGLMRKGVLLAEKSPEEL 152
+ L S EL
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSEL 213
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 76.4 bits (189), Expect = 6e-17
Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
++ Q+ + Y +L++ + ++ L L R+ + LSG
Sbjct: 75 RAYLSQQQTPPFATPVWH----YLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQLSG 129
Query: 70 GQVRRVSIAVTLL-------HTPSLVILDEPTSGLDPMLAHYFWQY-----LQRMSSNGQ 117
G+ +RV +A +L L++LDEP + LD +A Q L +S G
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD--VAQ---QSALDKILSALSQQGL 184
Query: 118 TIIITTHYIEEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
I++++H + R A+ L++ G +LA EE++ +L + +
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP---PNLAQAY 230
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 76.1 bits (188), Expect = 1e-16
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 15/164 (9%)
Query: 11 IGFMPQETALFDEFTIAETFQF----YASLYRISSEEFRAKMKELQEVLDLPP-DHRTCS 65
IGF+PQ + +++ + + + + + + L+L R +
Sbjct: 68 IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT 127
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAH--YFWQYLQRMS-SNGQTIIIT 122
+LSGGQ + + IA + L++LDEPTS LD LA+ L ++ S T++ T
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD--LANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 123 THYIEEA-RQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
TH + AN L+ K ++ S ++L +F
Sbjct: 186 THQPNQVVAIANKTLLLNKQN-FKFGETRNILTS---ENLTALF 225
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 75.5 bits (186), Expect = 8e-16
Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 8/182 (4%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQ 71
PQ I Q L ++ E+ +K ++L L R LSGG+
Sbjct: 168 IKPQYVDNIP-RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGE 226
Query: 72 VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQ 131
++R +I ++ + + + DEP+S LD Q ++ + + + +I H +
Sbjct: 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286
Query: 132 -ANVVGLMR-----KGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEKGPN 185
++ V ++ GV+ S E I + + LR + Q A+ +
Sbjct: 287 LSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQ 346
Query: 186 KK 187
Sbjct: 347 ND 348
Score = 68.5 bits (168), Expect = 2e-13
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 24/152 (15%)
Query: 10 YIGFMPQET--ALFDEFTIAETFQFYASLYRISSEEFRAKMKE---LQEVLDLPPDHRTC 64
I T LF + + + +F+ + + + +++D
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQ----------FLNPQFQTDVVKPLRIDDIIDQEV----- 465
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITT 123
LSGG+++RV+I + L + ++DEP++ LD + ++R N +T I
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525
Query: 124 HYIEEARQ-ANVVGLMR--KGVLLAEKSPEEL 152
H A A+ V + ++PE L
Sbjct: 526 HDFIMATYLADKVIVFEGIPSKNAHARAPESL 557
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 69.5 bits (171), Expect = 1e-14
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 10 YIGFMPQETALFDEFTIAETFQ---FYASLYRISSEEFRAKMKELQEVLDLPP--DHRTC 64
+GF+ Q L E T E +E + + + L L L +
Sbjct: 83 KLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKP- 138
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGG+ +RV+IA L + P L+ DEPT LD +++ G +I++ TH
Sbjct: 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198
Query: 125 YIEEARQANVVGLMRKGVLLAEKS 148
E A + M+ G ++ E +
Sbjct: 199 ERELAELTHRTLEMKDGKVVGEIT 222
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 69.3 bits (170), Expect = 8e-14
Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Query: 5 SLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKE---LQEVLDLPPDH 61
+ + + PQ + T+ + + + +S F ++ + L +L+
Sbjct: 326 TPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV-- 383
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTII 120
+ LSGG+++++ IA TL L +LD+P+S LD + + ++R++
Sbjct: 384 ---NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
Query: 121 ITTHYIEEARQ 131
I H +
Sbjct: 441 IIDHDLSIHDY 451
Score = 67.7 bits (166), Expect = 3e-13
Identities = 26/167 (15%), Positives = 69/167 (41%), Gaps = 13/167 (7%)
Query: 25 TIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLH 83
++ ++ + R K E++E+L++ ++ + LSGG ++R+ +A +LL
Sbjct: 97 YASKFL-KGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR 155
Query: 84 TPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH---YIEEARQANVVGLMRK 140
+ I D+P+S LD + ++ + N +I+ H + +++ ++
Sbjct: 156 EADVYIFDQPSSYLDVRERMNMAKAIRELLKNK-YVIVVDHDLIVL--DYLTDLIHIIYG 212
Query: 141 -----GVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEK 182
G + + I ++ L +++ + + + E
Sbjct: 213 ESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSD 259
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 67.6 bits (166), Expect = 2e-13
Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 19/192 (9%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDL 57
+T SL S IG +PQ+T LF++ TIA+ + Y + ++E A+ + + ++
Sbjct: 121 VTQASLRSH-IGVVPQDTVLFND-TIADNIR-YGRVTA-GNDEVEAAAQAAGIHDAIMAF 176
Query: 58 PPDHRTC-----STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM 112
P +RT LSGG+ +RV+IA T+L P +++LDE TS LD L ++
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236
Query: 113 SSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQ 172
+N TI++ H + A+ + +++ G ++ E L++ G V+ + Q
Sbjct: 237 CANRTTIVV-AHRLSTVVNADQILVIKDGCIVERGRHEALLSRGG------VYADMWQLQ 289
Query: 173 NQAIEAEPEKGP 184
E + P
Sbjct: 290 QGQEETSEDTKP 301
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 66.4 bits (163), Expect = 2e-13
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
IGF+PQ+ ALF ++ + L + E +++E+ E L + R + LSG
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSG 129
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
G+ +RV++A L+ P L++LDEP S +D + L+ + I+ TH + E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 129 A-RQANVVGLMRKGVLLAEKSPEEL 152
A A+ V +M G ++ + +EL
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKEL 214
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 67.4 bits (164), Expect = 3e-13
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRVSIAV------ 79
+A + + S RA+ +++ + R + LSGG+ + +A
Sbjct: 208 LASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSL 267
Query: 80 TLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
L SL+ILDEPT LD ++R +I+ +H
Sbjct: 268 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 66.0 bits (162), Expect = 4e-13
Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDL 57
S+ S IG +PQ+T LF+E TI Y L + EE K +L + + L
Sbjct: 86 YNRNSIRSI-IGIVPQDTILFNE-TIKYNIL-YGKL-DATDEEVIKATKSAQLYDFIEAL 141
Query: 58 PPDHRTC-----STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM 112
P T LSGG+ +R++IA LL P +VI DE TS LD + F + ++ +
Sbjct: 142 PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201
Query: 113 SSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQ 172
N III H + A + L+ KG ++ + + ++L+ G + + + Q
Sbjct: 202 RKNRTLIII-AHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG------EYAEMWNMQ 254
Query: 173 NQAIE 177
+ +
Sbjct: 255 SGGND 259
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 66.2 bits (162), Expect = 9e-13
Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 17/187 (9%)
Query: 13 FMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDL-PPDHRTCSTLSGGQ 71
PQ L + + + + + K +E+ + L+L R LSGG+
Sbjct: 180 VKPQYVDLLPKAVKGKVREL------LKKVDEVGKFEEVVKELELENVLDRELHQLSGGE 233
Query: 72 VRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH---YIEE 128
++RV+IA LL DEP+S LD + ++R+++ G+ +++ H +
Sbjct: 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL-- 291
Query: 129 ARQANVVGLMRK-----GVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEKG 183
++V+ ++ G+ K I + L++ +R + + +
Sbjct: 292 DYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVD 351
Query: 184 PNKKGLV 190
++ LV
Sbjct: 352 VERETLV 358
Score = 62.7 bits (153), Expect = 1e-11
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 45 RAKMKELQEVLDLPPD-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAH 103
EL + L + R LSGG+++RV+IA TLL + +LDEP++ LD
Sbjct: 449 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLD----- 503
Query: 104 YFWQYLQRMS----------SNGQTIIITTH 124
QR++ N +T ++ H
Sbjct: 504 ----VEQRLAVSRAIRHLMEKNEKTALVVEH 530
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 66.2 bits (162), Expect = 1e-12
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC--- 64
IG + QE LF TIAE ++ ++ +E K + ++ LP T
Sbjct: 466 IGVVSQEPVLFAT-TIAENIRY--GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGE 522
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD L + G+T I+
Sbjct: 523 RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRTTIVI 581
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPE 181
H + R A+V+ GV++ + + +EL+ G ++ +L Q E E
Sbjct: 582 AHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG------IYFKLVMTQTAGNEIELG 634
Score = 62.4 bits (152), Expect = 2e-11
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRT---- 63
+G + QE LFD +IAE + + +S EE AK + + + LP + T
Sbjct: 1109 LGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167
Query: 64 -CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ LSGGQ +R++IA L+ P +++LDE TS LD + L + G+T I+
Sbjct: 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVI 1226
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEK 182
H + + A+++ +++ G + + ++L+A G ++ + Q A +
Sbjct: 1227 AHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG------IYFSMVSVQAGAKRSYVHH 1280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 64.0 bits (157), Expect = 2e-12
Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC--- 64
IGF+ Q++A+ TI E Y + E+ + + V ++P T
Sbjct: 78 IGFVSQDSAIMAG-TIRENLT-YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+SGGQ +R++IA L P +++LDE T+ LD + L + T++I
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVI- 194
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIE 177
H + A+ + + KG + EL+A++ ++ + +Q +
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP------LYAKYVSEQLTVGQ 243
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 63.3 bits (155), Expect = 3e-12
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 33 YASLYRISSEEFRAKMKELQEVLDLP---PDHRTCSTLSGGQVRRVSIAVTLLHTPSLVI 89
+ +S EE R + E ++ +L +H+ + LSGGQ +RV+IA L + P +++
Sbjct: 110 FKYRGAMSGEERRKRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIIL 168
Query: 90 LDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEEARQANVVGLMRKGVLLAEKS 148
D+PT LD Q L+++ +G+T+++ TH I AR + ++ G + E+
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
Query: 149 PEEL 152
Sbjct: 229 LRGF 232
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 64.3 bits (156), Expect = 6e-12
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKEL---QEVLDLPPDHRTCSTL 67
++ + T F + E + K+ E E++ +P S L
Sbjct: 497 TVYVEHDIDGTHSDT--SVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP-----ISAL 549
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
SGG ++++A +L +++LDEPT+ LD + + YL T I +H
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI---TSITISH 603
Score = 57.7 bits (139), Expect = 7e-10
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD---HRTCSTLSGGQVRRVSIAVTLL 82
+AE A R +++E +L L P+ H LSGGQ ++ +A
Sbjct: 858 VAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTW 917
Query: 83 HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
P L++LDEPT+ LD + L+ G +II TH
Sbjct: 918 QRPHLIVLDEPTNYLDRDSLGALSKALKE--FEG-GVIIITH 956
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 62.1 bits (152), Expect = 8e-12
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 11 IGFMPQETALFDEFTIAETFQFY---ASLYRISSEEFRAKMKELQE-VLDLPPDHRTC-- 64
+G + Q+ L + +I + S+ ++ + AK+ + + +L + T
Sbjct: 85 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKV---IYAAKLAGAHDFISELREGYNTIVG 140
Query: 65 ---STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
+ LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ III
Sbjct: 141 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 200
Query: 122 TTHYIEEARQANVVGLMRKGVLLAEKSPEELIA 154
H + + A+ + +M KG ++ + +EL++
Sbjct: 201 -AHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 62.2 bits (152), Expect = 1e-11
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGGQ +RVSIA L P +++ DEPTS LDP L + +Q+++ G+T+++ TH
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
Query: 125 YIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
+ AR ++ V + +G + E PE++ +
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 61.8 bits (151), Expect = 2e-11
Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 9/148 (6%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
+G++ QE LF T+ + + + + R +++ + E+ + R LSG
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSG 141
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY----LQRMSSNGQTIIITTHY 125
GQ +R ++A L P L++LDEP S LD L + R +NG++ + +H
Sbjct: 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQI-REDMIAALR--ANGKSAVFVSHD 198
Query: 126 IEEA-RQANVVGLMRKGVLLAEKSPEEL 152
EEA + A+ + +M++G +L SP EL
Sbjct: 199 REEALQYADRIAVMKQGRILQTASPHEL 226
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 61.4 bits (150), Expect = 2e-11
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 17/180 (9%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC--- 64
+ + QE LF + E Y + EE A + + P + T
Sbjct: 95 VAAVGQEPLLFGR-SFRENIA-YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE 152
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIII 121
+ LSGGQ + V++A L+ P L+ILD TS LD + L +T+++
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 122 TTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPE 181
T + A +A+ + +++G + + + +L+ G + + +A
Sbjct: 213 ITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG------CYRSMVEALAAPSDAAAH 266
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 59.9 bits (146), Expect = 5e-11
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+LSGGQ +RV+IA L P +++ DEPTS LDP + ++++++ G T+++ TH
Sbjct: 158 DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217
Query: 125 YIEEARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
+ AR+ + V M G ++ E PE+L
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 60.8 bits (148), Expect = 6e-11
Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 19/165 (11%)
Query: 39 ISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGL 97
+ + K++E+ + L+L R LSGG+++RV+IA LL + DEP+S L
Sbjct: 130 LKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189
Query: 98 DP----MLAHYFWQYLQRMSSNGQTIIITTH---YIEEARQANVVGLMR-----KGVLLA 145
D A + ++R+S G+++++ H + ++++ ++ G+
Sbjct: 190 DIRQRLNAA----RAIRRLSEEGKSVLVVEHDLAVL--DYLSDIIHVVYGEPGVYGIFSQ 243
Query: 146 EKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEKGPNKKGLV 190
K I + L++ +R + + + ++ LV
Sbjct: 244 PKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLV 288
Score = 58.8 bits (143), Expect = 3e-10
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 40 SSEEFRAKMKELQEVLDLPP-DHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
S EL + L + R + LSGG+++RV+IA TLL + +LDEP++ LD
Sbjct: 374 SKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
Query: 99 PMLAHYFWQY-----LQRMS-SNGQTIIITTH 124
+ ++ + N +T ++ H
Sbjct: 434 -----VEQRLAVSRAIRHLMEKNEKTALVVEH 460
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 57.8 bits (140), Expect = 7e-11
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 8/119 (6%)
Query: 25 TIAETFQFYASLYRIS-SEEFRAKMKELQEV-LDLPPDHRTCSTLSGGQVRRVSIA---- 78
+ +A SE + + + R + LSGG+ + +A
Sbjct: 14 IGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLA 73
Query: 79 --VTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVV 135
+ L SL+ILDEPT LD ++R +I+ +H E A+ V
Sbjct: 74 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 59.6 bits (145), Expect = 1e-10
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTC--STLS 68
IG + Q L T+ L +E + ++ EL ++ L D S LS
Sbjct: 107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLS 165
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
GGQ +RV+IA L P +++ D+ TS LDP + L+ ++ G TI++ TH ++
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225
Query: 128 EARQ-ANVVGLMRKGVLLAEKSPEELIA 154
++ + V ++ G L+ + + E+ +
Sbjct: 226 VVKRICDCVAVISNGELIEQDTVSEVFS 253
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 57.2 bits (139), Expect = 7e-10
Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
+G + Q ALF T+ + F R+ +E A+++EL + L +R LSG
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSG 148
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV++A L P +++ DEP + +D + +++++ G T + TH EE
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEEL 152
A + A+ V ++ +G + +PEE+
Sbjct: 209 ALEVADRVLVLHEGNVEQFGTPEEV 233
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 54.4 bits (132), Expect = 4e-09
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 42 EEFRAKMKELQEVLDLPPD-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPM 100
EE K ++ E L L R LSGGQ++ V I L+ P ++++DEP +G+ P
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 101 LAHYFWQYLQRMSSNGQTIIITTH----------YIEEARQANVVGLMRKGVLLAEKSPE 150
LAH + ++ + + G T +I H ++ V M G ++AE E
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHL-------YV--MFNGQIIAEGRGE 238
Query: 151 ELIAS 155
E I +
Sbjct: 239 EEIKN 243
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 54.9 bits (133), Expect = 5e-09
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
I F+ Q +LF + + +F + +I + ++ + L + R TLSG
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK---RVLDTARDLKIEHLLDRNPLTLSG 130
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY----LQRMSSNGQTIIITTHY 125
G+ +RV++A L+ P +++LDEP S LDP + L + N T++ TH
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-REMLSVLHK--KNKLTVLHITHD 187
Query: 126 IEEARQ-ANVVGLMRKGVLLAEKSPEEL 152
EAR A+ + ++ G L+ PEE+
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVGKPEEI 215
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 52.2 bits (125), Expect = 4e-08
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 36 LYRISSEEFRAKMKELQEVLDLPPDH-RTCSTLSGGQVRRVSIAVTL-------LHTPSL 87
++ + EV P+ T LSGG+ V++++ L +
Sbjct: 249 FSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVEC 308
Query: 88 VILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
+ILDEPT LD + +++ S Q IIIT
Sbjct: 309 IILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 51.2 bits (123), Expect = 6e-08
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLA-HYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ +N +T I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN-KTRILVTS 217
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEK 182
+E ++A+ + ++ +G + EL F + + E+
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNL------RPDFSSKLMGCDSFDQFSAER 269
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 50.7 bits (122), Expect = 1e-07
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 16/178 (8%)
Query: 11 IGFMPQETALFDEFTIAETFQF-YASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC-- 64
IG + QE LF +IAE + +++EE + A++ + + P T
Sbjct: 420 IGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 478
Query: 65 ---STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
LSGGQ +R++IA LL P +++LDE TS LD + + L R+ G+T+++
Sbjct: 479 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLV 537
Query: 122 TTHYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAE 179
H + + AN+V ++ +G + EEL++ ++ +L ++Q+ AE
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPN-----GIYRKLMNKQSFISAAE 590
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 50.7 bits (122), Expect = 1e-07
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC--- 64
+ + Q LF++ T+A YA S E+ A+M + + + T
Sbjct: 419 VALVSQNVHLFND-TVANNIA-YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGGQ +R++IA LL ++ILDE TS LD
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 49.9 bits (120), Expect = 1e-07
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLA-HYFWQYLQRMSS-NGQTIIITT 123
LSGGQ +RVS+A + + + D+P S +D + H F + +T I+ T
Sbjct: 127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELIASYG 157
H + Q +V+ +M G + S +EL+A G
Sbjct: 187 HSMSYLPQVDVIIVMSGGKISEMGSYQELLARDG 220
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 49.1 bits (118), Expect = 2e-07
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLA-HYFWQYLQRMSSNGQTIIITTH 124
TLSGGQ R+S+A + L +LD P LD + F + ++ + +T I+ T
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTS 188
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
+E ++A+ + ++ +G + EL
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSELQNL 219
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 49.9 bits (120), Expect = 2e-07
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC--- 64
+ Q LF++ TIA YA+ + E+ A+ E + ++P T
Sbjct: 419 FALVSQNVHLFND-TIANNIA-YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
++LSGGQ +RV+IA LL ++ILDE TS LD
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 49.9 bits (120), Expect = 3e-07
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 12/156 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFR--AKMKELQE-VLDLPPDHRTC--- 64
IG + Q+ LF + T+ E + EE AKM + +++LP + T
Sbjct: 417 IGLVQQDNILFSD-TVKENIL-LGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 473
Query: 65 --STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIIT 122
LSGGQ +R+SIA L+ P ++ILDE TS LD + L +S + T+I+
Sbjct: 474 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIV- 532
Query: 123 THYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
H + A+ + ++ G ++ + ELIA G
Sbjct: 533 AHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 48.8 bits (117), Expect = 5e-07
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 20/146 (13%)
Query: 26 IAETFQFYASLY----------------RISSEEFRAKMKELQEVLDLPP-DHRTCSTLS 68
I FQ +A LY ++S EE R +++E+ ++LD+ + LS
Sbjct: 84 IGMVFQTWA-LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELS 142
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIE 127
G Q +RV++A L+ PSL++LDEP S LD + ++ + S G T+++ +H
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202
Query: 128 EA-RQANVVGLMRKGVLLAEKSPEEL 152
+ A+ VG++ KG L+ PE+L
Sbjct: 203 DIFAIADRVGVLVKGKLVQVGKPEDL 228
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 1e-05
Identities = 49/260 (18%), Positives = 85/260 (32%), Gaps = 101/260 (38%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRIS---SEEFRAKM--------KELQEVLDLP 58
+IG E + ++ S+ S +E + M +++Q+ ++
Sbjct: 305 FIGVRCYEA--YPNTSLP------PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-- 354
Query: 59 PDHRTCSTLSGGQVRRVSIAVTLLHTP-SLVILDEPTS--GLDPMLAHYFWQYLQRMSSN 115
+T S L G ++V I+ L++ +LV+ P S GL+ L + S
Sbjct: 355 ---KTNSHLPAG--KQVEIS--LVNGAKNLVVSGPPQSLYGLNLTLRK-----AKAPSGL 402
Query: 116 GQTII---------------IT----THYIEEARQANVVGLMRKGVLLAEKSPEEL-IAS 155
Q+ I + +H + A L++ V + +++ I
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF---NAKDIQIPV 459
Query: 156 Y----GVD---SLEEVFLRLCHQQNQAIEAEP---EK------------GP--------- 184
Y G D + R+ I P E GP
Sbjct: 460 YDTFDGSDLRVLSGSISERIV----DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Query: 185 ---NKKGLVGGVRVIEILAG 201
NK G GVRV I+AG
Sbjct: 516 THRNKDGT--GVRV--IVAG 531
Score = 33.1 bits (75), Expect = 0.095
Identities = 49/295 (16%), Positives = 85/295 (28%), Gaps = 96/295 (32%)
Query: 7 GSTYIGFMPQETALFDEFTIA-ETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCS 65
GS G M + L+ A + + A + + F L V++ P +
Sbjct: 1625 GSQEQG-MGMD--LYKTSKAAQDVWN-RADNHFKDTYGFSI----LDIVINNPVNLTIHF 1676
Query: 66 TLSGGQ-VRRVSIAVTLLHTPSLVILDEPT-SGLDPMLAHYFWQYLQRMSSNG---QTII 120
G+ +R A+ + E ++ Y ++ S G T
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSATQF 1731
Query: 121 ITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVD---------SL-E------- 162
T Q A + L EK+ E + S G+ SL E
Sbjct: 1732 --T-------QPA---------LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 163 -EVF-----LRLCHQQNQAIEAEPEKGPNKKGLVGGV-----------------RVIEIL 199
+V + + + ++ + + G + V+E +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 200 AGYT-----IVLVLYNLINIAAMSLVQFVIYGQPYGNFWLSYV--LINFIGFTGI 247
T IV N N+ Q+V G L V ++NFI I
Sbjct: 1834 GKRTGWLVEIV----NY-NVENQ---QYVAAGDLRA---LDTVTNVLNFIKLQKI 1877
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 41.4 bits (98), Expect = 2e-04
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 26 IAETFQFYASLY----------------RISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
+ FQ +A LY + EE K++E+ ++L + +R LS
Sbjct: 77 VGLVFQNWA-LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLS 135
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
GGQ +RV+IA L+ P +++LDEP S LD
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 32/189 (16%), Positives = 58/189 (30%), Gaps = 51/189 (26%)
Query: 49 KELQEVLDLPPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQY 108
+E+ ++ R + TLL ++ L +Y +
Sbjct: 49 EEIDHIIMSKDAVS--------GTLR--LFWTLLSKQEEMVQKFVEEVLRI---NYKFLM 95
Query: 109 LQRMSSNGQTIIITTHYIEE-ARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLR 167
+ Q ++T YIE+ R N + K Y V L+ L+
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK---------------YNVSRLQPY-LK 139
Query: 168 LCHQQNQAIEAEPEKGPNKKGLVGGVRVIEILAGYTIVLVLYNLINIAAMSLVQF-VIYG 226
L + +E P K G++G +G T + A + + V
Sbjct: 140 L---RQALLELRPAKNVLIDGVLG--------SGKT---WV------ALDVCLSYKVQCK 179
Query: 227 QPYGNFWLS 235
+ FWL+
Sbjct: 180 MDFKIFWLN 188
Score = 39.1 bits (90), Expect = 0.001
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 31/186 (16%)
Query: 17 ETALFDEFTIAETFQ-FYASL-YRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRR 74
+ L + F+ F+ +L S E +++L +D P S ++R
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRI 227
Query: 75 VSIAVTLL-------HTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQ-TIIITTHYI 126
SI L + L++L + + F N I++TT
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAF---------NLSCKILLTT--- 272
Query: 127 EEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQNQAIEAEPEKG-PN 185
R V + S + + D ++ + L+ + Q + E P
Sbjct: 273 ---RFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 186 KKGLVG 191
+ ++
Sbjct: 329 RLSIIA 334
Score = 37.5 bits (86), Expect = 0.004
Identities = 38/244 (15%), Positives = 87/244 (35%), Gaps = 56/244 (22%)
Query: 15 PQET-ALFDEFTIAETF--------QFYASL-YRISSEEFRAKMKELQE--VLDLPPDHR 62
P E +FD ++ F + + + + + + +L + +++ P
Sbjct: 368 PAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 63 TCSTLSGGQVRRVSIAVTLLHTPSL--VILD--------EPTSGLDPMLAHYFWQYLQRM 112
T S + + + V L + +L I+D + + P L YF+ ++
Sbjct: 425 TIS-IPSIYLE---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--- 477
Query: 113 SSNGQTIIITTHYIEEARQANVVGLMRKGVL----LAEKSPEELIASYGVDSLEEVFLRL 168
G H+++ + L R L L +K + A S+ +L
Sbjct: 478 ---G-------HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 169 CHQQNQAIEAEPEKGPNKKGLVGGVRVIEILAGYTIVLVLY---NLINIAAMSLVQFVIY 225
+ + +P+ + LV +++ L L+ +L+ IA M+ + I+
Sbjct: 528 KFYKPYICDNDPK----YERLVNA--ILDFLPKIEENLICSKYTDLLRIALMAEDEA-IF 580
Query: 226 GQPY 229
+ +
Sbjct: 581 EEAH 584
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 40.7 bits (96), Expect = 3e-04
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 26 IAETFQFYASLY----------------RISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
I+ FQ YA ++ + +E +++ E+L + +R + LS
Sbjct: 85 ISMVFQSYA-VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLS 143
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
GGQ +RV++A ++ P ++++DEP S LD
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 40.2 bits (95), Expect = 3e-04
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 39 ISSEEFRAKMKELQEVLDLPPD--HRTCST-LSGGQVRRVSIAVTLLHTPSLVILDEPTS 95
+ +F+ M+E +L +P D R+ + SGG+ +R I + P L ILDE S
Sbjct: 134 LDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS 193
Query: 96 GLD----PMLAHYFWQYLQRMSSNGQTIIITTHY 125
GLD ++A + + ++ II THY
Sbjct: 194 GLDIDALKVVA----DGVNSLRDGKRSFIIVTHY 223
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 40.3 bits (95), Expect = 4e-04
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 18/90 (20%)
Query: 26 IAETFQFYASLY----------------RISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
+ FQ YA LY RIS +E ++ E+ L + R + LS
Sbjct: 77 VGMVFQNYA-LYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLS 135
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
GGQ +RV++A L+ P +++ DEP S LD
Sbjct: 136 GGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 39.8 bits (94), Expect = 4e-04
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 39 ISSEEFRAKMKELQEVLDLPPD--HRTCST-LSGGQVRRVSIAVTLLHTPSLVILDEPTS 95
+ EF K+K+ E+LD R + SGG+ +R I L+ P+ +LDE S
Sbjct: 113 VGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDS 172
Query: 96 GLD----PMLAHYFWQYLQRMSSNGQTIIITTHY 125
GLD ++A + + M ++ THY
Sbjct: 173 GLDIDALKVVA----RGVNAMRGPNFGALVITHY 202
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 39.0 bits (92), Expect = 6e-04
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 45 RAKMKE-LQEVLDLPPD-----HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
+ +K L+ + L P + TLSGG+ + ++I L+ P L+++DEP+ GL
Sbjct: 112 KEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA 171
Query: 99 PMLAHYFWQYLQRMSSNGQTIII 121
P+L ++ +Q+++ G TI++
Sbjct: 172 PILVSEVFEVIQKINQEGTTILL 194
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 39.5 bits (93), Expect = 6e-04
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 26 IAETFQFYASLY----------------RISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
IA FQ YA LY ++ +E +++E+ E+L L +R LS
Sbjct: 83 IAMVFQSYA-LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELS 141
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
GGQ +RV++ ++ P + ++DEP S LD
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 38.7 bits (91), Expect = 0.001
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 24/159 (15%)
Query: 11 IGFMPQETALFDEFTIAETFQF---YASLYRI-------SSEEFRAKMKELQEVLDLPPD 60
I +PQET LF TI E ++ A+ I +F + L E D +
Sbjct: 419 ISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDF---IISLPEGYDSRVE 474
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP----MLAHYFWQYLQRMSSNG 116
SGGQ +R+SIA L+ P ++ILD+ TS +DP + +Y +
Sbjct: 475 RGG-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC---- 529
Query: 117 QTIIITTHYIEEARQANVVGLMRKGVLLAEKSPEELIAS 155
T I T I A A+ + ++ +G + + +EL+
Sbjct: 530 -TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 38.7 bits (91), Expect = 0.001
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 66 TLSGGQVRRVSIAVTLLHTPS----LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
LSGG+ +R+ +A T L + +LDEPT+GL P + L ++ G T+I
Sbjct: 730 ELSGGEAQRIKLA-TELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788
Query: 122 TTH 124
H
Sbjct: 789 VEH 791
Score = 27.5 bits (62), Expect = 4.7
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 6/40 (15%)
Query: 62 RTCSTLSGGQVRRVSIAVTLLHTPSLV----ILDEPTSGL 97
R+ TLS G+++R+ +A T L++ +L +LDEP++GL
Sbjct: 375 RSTPTLSPGELQRLRLA-TQLYS-NLFGVVYVLDEPSAGL 412
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 38.6 bits (91), Expect = 0.002
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 40/156 (25%)
Query: 25 TIAETFQFYASLYRISSEEFRAKMKELQEV------LDLPPDHRTCSTLSGGQVRRVSIA 78
T+ E +F+ ++ I + ++ L +V L P +TLSGG+ +R+ +A
Sbjct: 768 TVDEALEFFKNIPSI-----KRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLA 817
Query: 79 VTLLHTPS----LVILDEPTSGLDPMLAHY-----FWQYLQRMSSNGQTIIITTHYIEEA 129
+ L L ILDEPT GL H+ + L R+ G T+I+ H ++
Sbjct: 818 -SELRKRDTGRTLYILDEPTVGL-----HFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVI 871
Query: 130 RQANVV------GLMRKGVLLAEKSPEELIA---SY 156
+ A+ + G G ++A +PEE+ SY
Sbjct: 872 KNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907
Score = 29.0 bits (66), Expect = 1.8
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 32/97 (32%)
Query: 23 EFTIAETFQFYASL------YRISSE---EFRAKMKELQEV----LDLPPDHRTCSTLSG 69
E +I+E +F +L I E E +++ L +V L L R+ +TLSG
Sbjct: 411 ELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTL---SRSATTLSG 467
Query: 70 GQVRRVSIA---------VTLLHTPSLVILDEPTSGL 97
G+ +R+ +A V + +LDEPT GL
Sbjct: 468 GESQRIRLATQIGSGLTGV-------IYVLDEPTIGL 497
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 37.4 bits (87), Expect = 0.003
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDP 99
LS G + + +A ++L +++LDEP++ LDP
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 37.5 bits (88), Expect = 0.003
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 66 TLSGGQVRRVSIAVTLLHTPS----LVILDEPTSGLDPMLAHY-----FWQYLQRMSSNG 116
TLSGG+ +RV +A LH S L ILDEPT+GL H L R+ NG
Sbjct: 543 TLSGGEAQRVKLA-AELHRRSNGRTLYILDEPTTGL-----HVDDIARLLDVLHRLVDNG 596
Query: 117 QTIIITTH 124
T+++ H
Sbjct: 597 DTVLVIEH 604
Score = 27.9 bits (63), Expect = 3.7
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 32/97 (32%)
Query: 23 EFTIAETFQFYASL------YRISSE---EFRAKMKELQEV----LDLPPDHRTCSTLSG 69
++ E F+ L +I+ E R ++ LQ V L L R+ TLSG
Sbjct: 149 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTL---SRSAGTLSG 205
Query: 70 GQVRRVSIA---------VTLLHTPSLVILDEPTSGL 97
G+ +R+ +A V L +LDEP+ GL
Sbjct: 206 GEAQRIRLATQIGSRLTGV-------LYVLDEPSIGL 235
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 36.8 bits (85), Expect = 0.004
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 62 RTCSTLSGGQVRRVSIAVTL-------LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSS 114
R LSGG+ +SI++ + + +DE S LD L+ +
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAF-FIDEGFSSLDTENKEKIASVLKELER 333
Query: 115 NGQTIIITTHYIEEARQA 132
+ I+ TH E +A
Sbjct: 334 LNKVIVFITH-DREFSEA 350
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 36.7 bits (86), Expect = 0.007
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 66 TLSGGQVRRVSIAVTLLHTPS----LVILDEPTSGLDPMLAHY-----FWQYLQRMSSNG 116
TLSGG+ +RV +A LH S L ILDEPT+GL H L R+ NG
Sbjct: 845 TLSGGEAQRVKLA-AELHRRSNGRTLYILDEPTTGL-----HVDDIARLLDVLHRLVDNG 898
Query: 117 QTIIITTH 124
T+++ H
Sbjct: 899 DTVLVIEH 906
Score = 27.9 bits (63), Expect = 4.3
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 32/97 (32%)
Query: 23 EFTIAETFQFYASL------YRISSE---EFRAKMKELQEV----LDLPPDHRTCSTLSG 69
++ E F+ L +I+ E R ++ LQ V L L R+ TLSG
Sbjct: 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTL---SRSAGTLSG 507
Query: 70 GQVRRVSIA---------VTLLHTPSLVILDEPTSGL 97
G+ +R+ +A V L +LDEP+ GL
Sbjct: 508 GEAQRIRLATQIGSRLTGV-------LYVLDEPSIGL 537
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 36.4 bits (85), Expect = 0.008
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 66 TLSGGQVRRVSIAVTLLHTPS----LVILDEPTSGLDPMLAHY-----FWQYLQRMSSNG 116
TLSGG+ +RV +A + L S + ILDEPT+GL H+ + + G
Sbjct: 863 TLSGGEAQRVKLA-SELQKRSTGRTVYILDEPTTGL-----HFDDIRKLLNVINGLVDKG 916
Query: 117 QTIIITTH 124
T+I+ H
Sbjct: 917 NTVIVIEH 924
Score = 27.1 bits (61), Expect = 6.9
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 32/97 (32%)
Query: 23 EFTIAETFQFYASL------YRISSE---EFRAKMKELQEV----LDLPPDHRTCSTLSG 69
E +IA+ F +L I+ + E R+++ L +V L L R +TLSG
Sbjct: 468 ELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLSL---SRAAATLSG 524
Query: 70 GQVRRVSIA---------VTLLHTPSLVILDEPTSGL 97
G+ +R+ +A V L +LDEP+ GL
Sbjct: 525 GEAQRIRLATQIGSGLVGV-------LYVLDEPSIGL 554
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 35.7 bits (83), Expect = 0.009
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 30/139 (21%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEVLDL----------PPDHR--TCSTLSGGQVR 73
+ E+F + ++ + E + P R S LSGG+
Sbjct: 170 VNESFN---RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGE-- 224
Query: 74 RVSIAVTLL-----HTPS-LVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY-- 125
+ + + LL PS +LDE S LD A F + L+ S + Q I+I TH
Sbjct: 225 KALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI-THNKI 283
Query: 126 -IEEARQANVVGL-MRKGV 142
+E A + G+ M GV
Sbjct: 284 VMEAADL--LHGVTMVNGV 300
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 35.6 bits (83), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LS GQ + ++I L P ++ILDE TS +D
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 33.4 bits (77), Expect = 0.032
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 53 EVLDLPPDHR--TCSTLSGGQVRRVSIAVTLL-----HTPS-LVILDEPTSGLDPMLAHY 104
E+ P +SGG+ + A+ + P+ + DE + LD
Sbjct: 49 EIEAKPAGKDVKRIEAMSGGE--KALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKR 106
Query: 105 FWQYLQRMSSNGQTIIITTHYIEEARQANVVGL-MRKGV 142
++ S Q I+IT + A ++G+ MR GV
Sbjct: 107 VADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGV 145
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 33.3 bits (77), Expect = 0.058
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 22/92 (23%)
Query: 26 IAETFQFYASLY----------------RISSEEFRAKMKELQEVLDLPPDH---RTCST 66
+ FQ YA LY E ++ ++ EVL L H R
Sbjct: 77 VGMVFQSYA-LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL--AHLLDRKPKA 133
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLD 98
LSGGQ +RV+I TL+ PS+ +LDEP S LD
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain,
DNA-binding, transcription regulation; HET: C2E TAR;
2.80A {Vibrio cholerae} PDB: 3kln_A*
Length = 225
Score = 31.8 bits (73), Expect = 0.16
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH----YIEEARQA 132
+ ++++D D + + + + + +II + +
Sbjct: 47 ENKPESRSIQMLVIDYSRISDDVLTD--YSSFKHISCPDAKEVIINCPQDIEHKLLFKWN 104
Query: 133 NVVGLMRKGVLLAEKSPEELIA 154
N+ GV + + LI
Sbjct: 105 NL-----AGVFYIDDDMDTLIK 121
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA,
nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Length = 455
Score = 29.7 bits (66), Expect = 1.0
Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 21 FDEFTIAE--TFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGGQVRRV--- 75
F+E+ + + +++ Y + + + + E + + R+
Sbjct: 211 FNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNY 270
Query: 76 SIAVTLL--HTPSLVILDEP 93
I L+ L
Sbjct: 271 MIPTGLILGKMVKWGPLRPF 290
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.8
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 23/46 (50%)
Query: 45 RAKMKELQEVLDL-PPDHRTCSTLSGGQVRRVSIAVTLLHTPSLVI 89
+ +K+LQ L L D S P+L I
Sbjct: 19 KQALKKLQASLKLYADD-------SA---------------PALAI 42
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas
aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Length = 326
Score = 27.9 bits (63), Expect = 3.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 139 RKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
R + L E L +Y ++L+E FL L
Sbjct: 34 RNRIALPWNDVETLRKAYAFNNLQE-FLDL 62
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 27.4 bits (61), Expect = 3.9
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 81 LLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+T + P +G DP LA + L+ + + II H
Sbjct: 196 ASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGH 239
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A
{Arthrobacter aurescens}
Length = 343
Score = 27.2 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 139 RKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
R G+ L + EEL Y L+ FL L
Sbjct: 37 RNGIELPYEDIEELREKYEFTDLQS-FLDL 65
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 26.5 bits (59), Expect = 7.2
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 29 TFQFYASLYRISSEEFRAKMKELQEVLD-LPPDHRTC 64
TF Y + + + ++ +VL LP ++
Sbjct: 134 TFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQV 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.402
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,982,404
Number of extensions: 245604
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 91
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)