RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4634
(249 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 127 bits (320), Expect = 1e-36
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
I ++P+E + E +F A Y SS E ++ E+ L ST S
Sbjct: 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 136
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G VR++ IA L+ P L ILDEPTSGLD + A + L++ S G TI++++H + E
Sbjct: 137 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196
Query: 130 RQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRL 168
+ + L+ G ++ + EEL Y ++EEVF +
Sbjct: 197 EFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEV 236
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 119 bits (299), Expect = 2e-33
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
I + Q A++ T+ E F + + +E +++ E+L + +R + LS
Sbjct: 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLS 138
Query: 69 GGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIE 127
GGQ +RV++A ++ P ++++DEP S LD L ++++ T I TH
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198
Query: 128 EARQ-ANVVGLMRKGVLLAEKSPEELIA 154
EA + + +M +G LL SP E+
Sbjct: 199 EAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 111 bits (280), Expect = 8e-31
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQF---YASLYRISSEEFRAKMKELQEVLDLPPD--HRTCS 65
IGF+ Q+ L T E + + +S EE R + E ++ +L + +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTH 124
LSGGQ +RV+IA L + P +++ D+PT LD Q L+++ +G+T+++ TH
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204
Query: 125 YIEEARQANVVGLMRKGVLLAEKSP 149
I AR + ++ G + E+
Sbjct: 205 DINVARFGERIIYLKDGEVEREEKL 229
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 110 bits (277), Expect = 3e-30
Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 12 GFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSGG 70
+P+ +F E T+ E A + R L + TLSGG
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGG 143
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEAR 130
+ + ++I L+ P L+++DEP+ GL P+L ++ +Q+++ G TI++ A
Sbjct: 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203
Query: 131 Q-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFL 166
+ A+ ++ G ++ E EL+ + + + + +L
Sbjct: 204 KVAHYGYVLETGQIVLEGKASELLDN---EMVRKAYL 237
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 111 bits (278), Expect = 3e-30
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYR-ISSEEFRAKMKELQEVLDLPP--DHRTCSTL 67
+ + Q L+ T+ E +S + R + + + + + L
Sbjct: 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150
Query: 68 SGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIE 127
SGGQ +RVSIA L P +++ DEPTS LDP L + +Q+++ G+T+++ TH +
Sbjct: 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 210
Query: 128 EARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
AR ++ V + +G + E PE++ +
Sbjct: 211 FARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 109 bits (273), Expect = 1e-29
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
IG + Q L T+ L +E + ++ EL ++ L S LSG
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 143
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITTHYIEE 128
GQ +RV+IA L P +++ DE TS LDP + L+ ++ G TI++ TH ++
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
++ + V ++ G L+ + + E+ +
Sbjct: 204 VKRICDCVAVISNGELIEQDTVSEVFSH 231
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 109 bits (273), Expect = 2e-29
Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 6/149 (4%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLP-----PDHRTCS 65
+ F Q + + TI E F S + + Q++
Sbjct: 99 VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 66 TLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHY 125
TLSGGQ R+S+A + L +LD P LD ++ +T I+ T
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
Query: 126 IEEARQANVVGLMRKGVLLAEKSPEELIA 154
+E R+A+ + ++ +G + EL +
Sbjct: 218 MEHLRKADKILILHQGSSYFYGTFSELQS 246
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 105 bits (263), Expect = 4e-28
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 16/170 (9%)
Query: 13 FMPQETALFDEFTIAETFQFYASLY-------------RISSEEFRAKMKELQEVLDLPP 59
Q E T+ E EE K ++ E L L
Sbjct: 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 142
Query: 60 D-HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQT 118
R LSGGQ++ V I L+ P ++++DEP +G+ P LAH + ++ + + G T
Sbjct: 143 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGIT 202
Query: 119 IIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDS-LEEVFL 166
+I H ++ + + +M G ++AE EE I + D + E+++
Sbjct: 203 FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIYI 252
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 103 bits (257), Expect = 2e-27
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPP-DHRTCSTLSG 69
I + Q AL+ T+ + F L ++ +E +++E+ E+L L +R LSG
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSG 142
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE 128
GQ +RV++ ++ P + ++DEP S LD L L+++ G T I TH E
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIA 154
A + + +M +GVL SP+E+
Sbjct: 203 AMTMGDRIAVMNRGVLQQVGSPDEVYD 229
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 98.8 bits (246), Expect = 2e-25
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD------HRTC 64
+ + Q LF++ Y E A+M + ++ +
Sbjct: 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 150
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
LSGGQ +R++IA LL ++ILDE TS LD L + +T ++ H
Sbjct: 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAH 209
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQ 172
+ QA+ + ++ G+++ + EL+A +G V+ +L Q
Sbjct: 210 RLSTIEQADEIVVVEDGIIVERGTHSELLAQHG------VYAQLHKMQ 251
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 97.6 bits (243), Expect = 4e-25
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 14/170 (8%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD------HRT 63
IG + Q+ LF T+ E AKM + + P
Sbjct: 93 QIGLVQQDNILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGER 151
Query: 64 CSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITT 123
LSGGQ +R+SIA L+ P ++ILDE TS LD + L + S +T +I
Sbjct: 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVA 210
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQN 173
H + A+ + ++ G ++ + ELIA + + L QN
Sbjct: 211 HRLSTITHADKIVVIENGHIVETGTHRELIAK------QGAYEHLYSIQN 254
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 95.4 bits (237), Expect = 2e-24
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 3/157 (1%)
Query: 1 MTATSLGSTYIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD 60
M T +G + Q AL+ ++AE F L E ++ ++ EVL L
Sbjct: 64 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 123
Query: 61 -HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQT 118
R LSGGQ +RV+I TL+ PS+ +LDEP S LD L + R+ G+T
Sbjct: 124 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 183
Query: 119 IIITTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIA 154
+I TH EA A+ + ++ G + P EL
Sbjct: 184 MIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 93.0 bits (231), Expect = 2e-23
Identities = 34/168 (20%), Positives = 66/168 (39%), Gaps = 13/168 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD------HRTC 64
IGF+ Q++A+ Y + + ++ PD
Sbjct: 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG 137
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+SGGQ +R++IA L P +++LDE T+ LD + L + G+T ++ H
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-MKGRTTLVIAH 196
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQ 172
+ A+ + + KG + EL+A+ ++ + +Q
Sbjct: 197 RLSTIVDADKIYFIEKGQITGSGKHNELVAT------HPLYAKYVSEQ 238
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 91.5 bits (227), Expect = 5e-23
Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD------HRTC 64
+G + Q+ L + +I + + + AK+ + + +
Sbjct: 79 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG 137
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
+ LSGGQ +R++IA L++ P ++I DE TS LD H + + ++ G+T+II H
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH 196
Query: 125 YIEEARQANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVFLRLCHQQN 173
+ + A+ + +M KG ++ + +EL++ E ++ L Q+
Sbjct: 197 RLSTVKNADRIIVMEKGKIVEQGKHKELLS-----EPESLYSYLYQLQS 240
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 89.6 bits (222), Expect = 3e-22
Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 17/165 (10%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLS 68
+ ++ Q+ + + + + ++ L L R+ + LS
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLGRSTNQLS 127
Query: 69 GGQVRRVSIAVTLLHT-------PSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIII 121
GG+ +RV +A +L L++LDEP + LD + L + G I++
Sbjct: 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVM 187
Query: 122 TTHYIEEARQ-ANVVGLMRKGVLLAEKSPEELIASYGVDSLEEVF 165
++H + + A+ L++ G +LA EE++ +L + +
Sbjct: 188 SSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP---PNLAQAY 229
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 88.8 bits (220), Expect = 3e-22
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSGG 70
I F+P+E + + ++ + + ASLY + + + E +++ + LS G
Sbjct: 72 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM--DALESVEVLDLKKKLGELSQG 129
Query: 71 QVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQR-MSSNGQTIIITTHYIEEA 129
+RRV +A TLL + +LD+P +D H + + + G II + +
Sbjct: 130 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYC 189
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 88.0 bits (218), Expect = 1e-21
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 11 IGFMPQETALFD---EFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHR---TC 64
+ + QE +F + IA ++ I++ ++ L D
Sbjct: 90 VAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAG 149
Query: 65 STLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSN-GQTIIITT 123
S LSGGQ + V++A L+ P ++ILD+ TS LD Q L +++++ T
Sbjct: 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209
Query: 124 HYIEEARQANVVGLMRKGVLLAEKSPEELIASYGV 158
++ QA+ + + G + + ++L+ G
Sbjct: 210 QHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC 244
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 87.1 bits (215), Expect = 3e-21
Identities = 46/147 (31%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
IG + Q AL+ T E F + ++S EE R +++E+ ++LD+ + LSG
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE 128
Q +RV++A L+ PSL++LDEP S LD + ++ + S G T+++ +H +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIA 154
A+ VG++ KG L+ PE+L
Sbjct: 204 IFAIADRVGVLVKGKLVQVGKPEDLYD 230
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 86.7 bits (214), Expect = 3e-21
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 4/147 (2%)
Query: 10 YIGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPDHRTCSTLSG 69
I F+ Q +LF + + +F + +I + ++ R TLSG
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH--LLDRNPLTLSG 130
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE 128
G+ +RV++A L+ P +++LDEP S LDP + L + N T++ TH E
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIA 154
AR A+ + ++ G L+ PEE+
Sbjct: 191 ARIMADRIAVVMDGKLIQVGKPEEIFE 217
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 76.2 bits (187), Expect = 3e-17
Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 5/148 (3%)
Query: 11 IGFMPQETALFDEFTIAETFQFYASLYRISSEEFRAKMKELQEVLDLPPD-HRTCSTLSG 69
IGF+PQ+ ALF ++ + + E +++E+ E L + R + LSG
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSG 129
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRM-SSNGQTIIITTHYIEE 128
G+ +RV++A L+ P L++LDEP S +D + L+ + I+ TH + E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 129 ARQ-ANVVGLMRKGVLLAEKSPEELIAS 155
A A+ V +M G ++ + +EL ++
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFSA 217
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 59.9 bits (143), Expect = 4e-11
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 70 GQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEA 129
G R+++++ L SL+ILDEPT LD ++R +I+ +H E
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK 347
Query: 130 RQAN-VVGL-MRKGV 142
A+ V+ + + G
Sbjct: 348 DAADHVIRISLENGS 362
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 59.4 bits (142), Expect = 4e-11
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 73 RRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQA 132
R+++++ L SL+ILDEPT LD ++R +I+ +H E A
Sbjct: 214 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 273
Query: 133 N-VVGLMRKG 141
+ V+ + +
Sbjct: 274 DHVIRISLEN 283
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 47.7 bits (112), Expect = 2e-07
Identities = 8/78 (10%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Query: 67 LSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYI 126
+ + ++I+DE + Q M ++ T
Sbjct: 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIR 140
Query: 127 EEARQANVVGLMRKGVLL 144
+ + + VL+
Sbjct: 141 DVHPLVKEIRRLPGAVLI 158
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 43.6 bits (101), Expect = 1e-05
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTH 124
A+ +LDE + LD Y++R + I+ +
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 394
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 33.1 bits (74), Expect = 0.024
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 82 LHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVGL-MRK 140
+ +LDE S LD A F + L+ S + Q I+IT + I + G+ M
Sbjct: 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298
Query: 141 GV 142
GV
Sbjct: 299 GV 300
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a3 [TaxId: 9606]}
Length = 93
Score = 27.5 bits (61), Expect = 0.62
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 15 PQETALFDEFTIAETFQFYA----SLYRISSEEFRAKMKEL 51
P E A+ I TFQ YA Y++ E + +++
Sbjct: 3 PLEQAVA---AIVCTFQEYAGRCGDKYKLCQAELKELLQKE 40
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.4 bits (62), Expect = 0.78
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 77 IAVTLLHTPSLVILDEPTSGLDPMLAHYFWQYLQRMSSNGQTIIITTHYIEEARQANVVG 136
A+ + DE + LD ++ S Q I+IT + A ++G
Sbjct: 239 FAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIG 298
Query: 137 L-MRKGV 142
+ MR GV
Sbjct: 299 VSMRDGV 305
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 84
Score = 25.9 bits (57), Expect = 1.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 26 IAETFQFYASLYRISSEEFRAKMKELQEV 54
E + EEF + KEL++V
Sbjct: 38 CNEIISWLDKNQTAEKEEFEHQQKELEKV 66
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse
(Mus musculus), mitochondrial [TaxId: 10090]}
Length = 130
Score = 26.4 bits (58), Expect = 2.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 42 EEFRAKMKELQEVLDLPPDHRTCSTLS 68
E K ++ + L LPP CS L+
Sbjct: 80 EALTIKNTDIAKELCLPPVKLHCSMLA 106
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 26.1 bits (56), Expect = 4.8
Identities = 2/14 (14%), Positives = 3/14 (21%)
Query: 148 SPEELIASYGVDSL 161
+ G D
Sbjct: 455 MVGPFVKEQGADIA 468
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia
coli [TaxId: 562]}
Length = 245
Score = 25.7 bits (55), Expect = 5.9
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 30 FQFYASLYRISSEEFRAKMKELQEVLDLPPDHR 62
F S +RI + K L VL + P R
Sbjct: 4 FTISESEHRIHNPFTEEKYATLGRVLRMKPGTR 36
>d1gnwa1 a.45.1.1 (A:86-211) Class phi GST {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 126
Score = 24.2 bits (52), Expect = 9.7
Identities = 14/116 (12%), Positives = 36/116 (31%), Gaps = 21/116 (18%)
Query: 15 PQETALFDEFTIAETFQFYASLYRISSEEFRAKM--------------KELQEVLDLPPD 60
+ A+ E QF +++ E+ + +L +VLD+
Sbjct: 8 ISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEA 67
Query: 61 HRTCSTLSGGQVRRVSIAVTLLHTPSLVILDEPTSGLDPMLAHY--FWQYLQRMSS 114
G+ ++ L H P++ L + + +++ ++
Sbjct: 68 RLKEFKYLAGE--TFTLT-DLHHIPAIQYLLG--TPTKKLFTERPRVNEWVAEITK 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.402
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 947,137
Number of extensions: 43908
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 36
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)