Query psy4640
Match_columns 109
No_of_seqs 140 out of 803
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 21:58:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01260 PH_CNK Connector enhan 99.9 2.4E-22 5.3E-27 128.8 9.7 78 20-100 19-96 (96)
2 cd01251 PH_centaurin_alpha Cen 99.8 7.8E-20 1.7E-24 119.3 10.6 81 21-102 16-101 (103)
3 cd01233 Unc104 Unc-104 pleckst 99.8 2.2E-19 4.7E-24 116.5 9.7 79 21-100 18-97 (100)
4 cd01264 PH_melted Melted pleck 99.8 2.8E-19 6E-24 116.7 9.3 81 18-100 17-100 (101)
5 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 4.9E-19 1.1E-23 114.0 10.1 78 18-101 15-94 (95)
6 cd01238 PH_Tec Tec pleckstrin 99.8 5.9E-19 1.3E-23 115.7 9.9 76 24-100 24-106 (106)
7 cd01252 PH_cytohesin Cytohesin 99.8 1.1E-18 2.3E-23 117.1 10.9 81 21-104 16-116 (125)
8 cd01236 PH_outspread Outspread 99.8 7.5E-18 1.6E-22 110.5 10.2 81 15-99 19-102 (104)
9 cd01244 PH_RasGAP_CG9209 RAS_G 99.8 8.5E-18 1.8E-22 109.2 10.1 74 24-100 24-98 (98)
10 cd01257 PH_IRS Insulin recepto 99.8 6.9E-18 1.5E-22 110.1 9.5 77 18-99 12-100 (101)
11 cd01245 PH_RasGAP_CG5898 RAS G 99.7 1.2E-17 2.7E-22 108.4 9.0 79 19-99 14-97 (98)
12 cd01247 PH_GPBP Goodpasture an 99.7 2.4E-17 5.1E-22 105.6 9.9 76 18-99 13-90 (91)
13 cd01246 PH_oxysterol_bp Oxyste 99.7 3.2E-17 6.9E-22 102.7 10.1 76 20-100 14-91 (91)
14 cd01263 PH_anillin Anillin Ple 99.7 9.3E-18 2E-22 112.8 7.8 84 16-100 15-122 (122)
15 cd01266 PH_Gab Gab (Grb2-assoc 99.7 2.4E-17 5.3E-22 108.1 9.3 80 19-100 18-107 (108)
16 cd01235 PH_SETbf Set binding f 99.7 7.9E-17 1.7E-21 103.4 11.1 82 18-101 13-101 (101)
17 cd01250 PH_centaurin Centaurin 99.7 9.7E-17 2.1E-21 101.0 9.8 79 19-100 14-94 (94)
18 cd01253 PH_beta_spectrin Beta- 99.7 2.3E-16 5E-21 102.2 9.9 79 20-100 22-104 (104)
19 cd01230 PH_EFA6 EFA6 Pleckstri 99.7 2.9E-16 6.3E-21 104.9 9.9 83 20-104 25-114 (117)
20 PF00169 PH: PH domain; Inter 99.7 7E-16 1.5E-20 96.9 11.0 80 22-101 18-103 (104)
21 cd01256 PH_dynamin Dynamin ple 99.7 8.2E-16 1.8E-20 99.5 8.4 81 20-101 18-105 (110)
22 cd01237 Unc112 Unc-112 pleckst 99.6 1.3E-15 2.8E-20 100.0 9.1 83 19-103 18-105 (106)
23 KOG0930|consensus 99.6 1.3E-15 2.8E-20 114.6 8.6 81 18-102 275-376 (395)
24 PF15410 PH_9: Pleckstrin homo 99.6 5.6E-15 1.2E-19 98.6 9.0 79 21-101 26-118 (119)
25 cd01254 PH_PLD Phospholipase D 99.5 7.9E-14 1.7E-18 93.4 10.3 80 20-100 32-121 (121)
26 cd01220 PH_CDEP Chondrocyte-de 99.5 8.9E-14 1.9E-18 90.4 9.1 84 16-102 12-98 (99)
27 cd01241 PH_Akt Akt pleckstrin 99.5 1.5E-13 3.2E-18 89.4 8.3 80 18-101 15-102 (102)
28 smart00233 PH Pleckstrin homol 99.5 7.6E-13 1.6E-17 81.5 10.5 82 20-101 17-101 (102)
29 cd00821 PH Pleckstrin homology 99.4 2.6E-12 5.7E-17 78.4 9.7 78 21-100 16-96 (96)
30 cd00900 PH-like Pleckstrin hom 99.4 1.4E-11 3.1E-16 75.6 10.1 80 19-100 17-99 (99)
31 cd01219 PH_FGD FGD (faciogenit 99.3 1.6E-11 3.5E-16 79.7 9.7 74 25-102 22-100 (101)
32 PF15409 PH_8: Pleckstrin homo 99.2 2.3E-10 4.9E-15 73.1 9.8 69 25-100 18-88 (89)
33 PF15413 PH_11: Pleckstrin hom 99.0 1.9E-09 4E-14 71.3 8.2 85 13-100 9-112 (112)
34 KOG3531|consensus 98.9 8.4E-10 1.8E-14 92.4 2.4 85 19-104 938-1022(1036)
35 cd01218 PH_phafin2 Phafin2 Pl 98.8 7.3E-08 1.6E-12 63.2 9.8 83 17-103 15-100 (104)
36 KOG0932|consensus 98.8 2.5E-09 5.3E-14 86.9 2.4 83 20-104 531-620 (774)
37 KOG3640|consensus 98.7 2.6E-08 5.6E-13 84.4 5.4 95 7-102 994-1107(1116)
38 cd01242 PH_ROK Rok (Rho- assoc 98.6 1.2E-06 2.6E-11 57.9 10.1 84 18-101 17-110 (112)
39 cd01239 PH_PKD Protein kinase 98.5 1.2E-06 2.7E-11 58.2 8.0 81 19-100 14-117 (117)
40 cd01249 PH_oligophrenin Oligop 98.5 3.7E-07 8E-12 59.8 5.1 51 46-99 52-103 (104)
41 cd01261 PH_SOS Son of Sevenles 98.4 4.7E-06 1E-10 55.3 9.2 76 25-102 24-110 (112)
42 KOG2059|consensus 98.4 4.4E-07 9.5E-12 75.3 5.0 80 22-104 587-667 (800)
43 cd01243 PH_MRCK MRCK (myotonic 98.3 1.2E-05 2.5E-10 54.0 9.9 83 18-100 17-118 (122)
44 cd01259 PH_Apbb1ip Apbb1ip (Am 98.3 3.3E-06 7.1E-11 56.0 6.1 91 14-104 9-111 (114)
45 KOG1117|consensus 98.2 4.9E-06 1.1E-10 70.6 7.7 82 19-101 517-601 (1186)
46 cd01234 PH_CADPS CADPS (Ca2+-d 98.2 1.6E-06 3.5E-11 56.9 3.5 83 18-103 17-112 (117)
47 KOG0521|consensus 98.2 1.8E-06 4E-11 73.1 4.2 76 24-102 294-369 (785)
48 PF14593 PH_3: PH domain; PDB: 98.1 2.5E-05 5.4E-10 51.2 8.3 70 25-104 31-102 (104)
49 cd01226 PH_exo84 Exocyst compl 98.1 2.5E-05 5.3E-10 50.9 8.1 56 43-101 43-98 (100)
50 PF15406 PH_6: Pleckstrin homo 98.1 1.3E-05 2.9E-10 52.8 6.2 61 31-99 50-111 (112)
51 cd01258 PH_syntrophin Syntroph 98.0 4.6E-05 1E-09 50.3 7.4 81 19-99 17-107 (108)
52 KOG1090|consensus 98.0 3.6E-06 7.8E-11 72.5 2.3 81 19-101 1648-1731(1732)
53 cd01224 PH_Collybistin Collybi 97.9 0.00025 5.3E-09 46.9 9.8 75 26-100 23-106 (109)
54 cd01225 PH_Cool_Pix Cool (clon 97.8 0.00016 3.5E-09 47.9 7.7 75 25-101 32-109 (111)
55 cd01262 PH_PDK1 3-Phosphoinosi 97.8 0.00013 2.9E-09 46.5 6.8 67 25-101 19-88 (89)
56 cd01231 PH_Lnk LNK-family Plec 97.8 9.5E-05 2.1E-09 48.3 6.0 70 30-99 34-106 (107)
57 KOG4424|consensus 97.8 2.9E-05 6.2E-10 63.5 4.3 86 18-104 510-598 (623)
58 PTZ00267 NIMA-related protein 97.6 0.00017 3.8E-09 57.4 6.8 37 65-101 440-476 (478)
59 cd01223 PH_Vav Vav pleckstrin 97.6 0.00027 5.7E-09 47.2 6.3 62 44-105 49-115 (116)
60 cd01222 PH_clg Clg (common-sit 97.6 0.0015 3.3E-08 42.2 9.5 70 29-102 24-96 (97)
61 cd01221 PH_ephexin Ephexin Ple 97.5 0.0015 3.2E-08 44.2 8.7 33 66-98 82-119 (125)
62 PLN02866 phospholipase D 97.5 0.00097 2.1E-08 58.1 9.5 81 21-102 218-308 (1068)
63 KOG3751|consensus 97.4 0.00031 6.8E-09 57.2 5.7 89 15-103 327-426 (622)
64 KOG0690|consensus 97.4 0.00058 1.3E-08 53.7 6.5 83 19-102 30-117 (516)
65 PLN00188 enhanced disease resi 97.3 0.00098 2.1E-08 56.1 7.6 79 25-103 27-111 (719)
66 PF12814 Mcp5_PH: Meiotic cell 97.3 0.0051 1.1E-07 41.1 9.1 81 19-101 29-121 (123)
67 cd01228 PH_BCR-related BCR (br 97.2 0.00041 8.8E-09 44.8 3.3 46 45-100 48-93 (96)
68 cd01232 PH_TRIO Trio pleckstri 96.9 0.0059 1.3E-07 40.6 7.0 52 46-101 57-112 (114)
69 PTZ00283 serine/threonine prot 96.8 0.0019 4.2E-08 51.9 4.9 38 65-102 453-490 (496)
70 KOG1117|consensus 96.5 0.008 1.7E-07 51.8 6.1 77 26-103 1056-1133(1186)
71 KOG3727|consensus 96.4 0.0013 2.7E-08 54.1 0.9 76 27-104 385-461 (664)
72 PF15405 PH_5: Pleckstrin homo 96.2 0.011 2.4E-07 40.3 4.6 36 65-100 97-134 (135)
73 KOG0248|consensus 96.1 0.0047 1E-07 52.1 3.0 75 24-105 268-345 (936)
74 cd01255 PH_TIAM TIAM Pleckstri 96.0 0.12 2.5E-06 36.0 9.0 94 9-103 34-156 (160)
75 KOG1738|consensus 96.0 0.00092 2E-08 55.3 -1.8 39 22-60 582-620 (638)
76 KOG3549|consensus 95.7 0.0037 8E-08 49.2 0.8 80 27-108 306-393 (505)
77 cd01240 PH_beta-ARK Beta adren 95.7 0.044 9.5E-07 36.4 5.7 82 18-102 10-99 (116)
78 cd01248 PH_PLC Phospholipase C 95.6 0.12 2.5E-06 33.8 7.6 33 67-99 79-114 (115)
79 KOG1739|consensus 95.6 0.018 3.8E-07 47.0 4.1 76 21-102 40-117 (611)
80 KOG1264|consensus 95.5 0.027 5.9E-07 48.6 5.1 57 46-103 854-912 (1267)
81 KOG4236|consensus 95.1 0.044 9.4E-07 45.8 5.0 81 25-107 433-529 (888)
82 KOG3543|consensus 95.0 0.0072 1.6E-07 50.9 0.2 66 35-102 500-566 (1218)
83 KOG1451|consensus 94.8 0.04 8.7E-07 46.0 4.1 59 43-104 311-370 (812)
84 cd01227 PH_Dbs Dbs (DBL's big 94.7 0.16 3.6E-06 34.6 6.3 55 46-104 63-118 (133)
85 PF15408 PH_7: Pleckstrin homo 94.1 0.066 1.4E-06 34.3 3.0 75 25-101 16-97 (104)
86 KOG4407|consensus 94.0 0.0045 9.7E-08 55.3 -3.2 90 9-100 931-1040(1973)
87 KOG4424|consensus 93.8 0.14 3.1E-06 42.5 5.2 37 65-102 334-370 (623)
88 KOG0705|consensus 92.9 0.08 1.7E-06 44.2 2.5 35 68-102 446-480 (749)
89 KOG4807|consensus 92.2 0.00089 1.9E-08 53.2 -9.3 81 18-103 32-116 (593)
90 KOG0517|consensus 91.7 0.0052 1.1E-07 56.3 -6.1 76 25-102 2327-2410(2473)
91 PF08458 PH_2: Plant pleckstri 91.1 0.87 1.9E-05 30.1 5.3 38 65-103 68-105 (110)
92 KOG3523|consensus 90.7 0.3 6.4E-06 41.0 3.5 35 65-99 553-592 (695)
93 PF15411 PH_10: Pleckstrin hom 90.1 1.2 2.6E-05 29.5 5.5 50 44-97 63-116 (116)
94 KOG2070|consensus 89.9 0.72 1.6E-05 38.1 5.0 71 27-99 331-404 (661)
95 KOG3520|consensus 86.5 0.86 1.9E-05 40.8 3.7 57 44-104 666-724 (1167)
96 KOG3723|consensus 85.6 0.35 7.5E-06 40.6 0.9 76 25-101 758-836 (851)
97 PF15404 PH_4: Pleckstrin homo 83.4 1.5 3.3E-05 31.5 3.2 24 77-100 161-184 (185)
98 PF12480 DUF3699: Protein of u 80.9 7.9 0.00017 23.8 5.4 51 43-98 7-62 (77)
99 KOG3531|consensus 80.6 1.6 3.4E-05 38.1 2.9 80 18-101 762-844 (1036)
100 PF15277 Sec3-PIP2_bind: Exocy 79.6 12 0.00026 23.6 6.1 53 45-102 36-89 (91)
101 PF14844 PH_BEACH: PH domain a 78.4 12 0.00026 23.6 6.0 70 26-97 21-105 (106)
102 KOG4471|consensus 77.3 6.8 0.00015 33.2 5.5 77 27-103 60-138 (717)
103 KOG3551|consensus 76.5 5.5 0.00012 32.2 4.6 89 13-101 302-401 (506)
104 KOG1170|consensus 75.9 1.1 2.4E-05 39.0 0.6 39 65-104 59-97 (1099)
105 KOG0248|consensus 75.4 1.7 3.8E-05 37.2 1.6 79 24-102 375-466 (936)
106 KOG3551|consensus 68.8 9.7 0.00021 30.8 4.3 56 45-102 215-272 (506)
107 KOG1738|consensus 67.5 0.26 5.7E-06 41.2 -4.7 85 22-109 86-170 (638)
108 KOG2996|consensus 61.6 14 0.00031 31.5 4.2 77 30-106 431-516 (865)
109 cd06409 PB1_MUG70 The MUG70 pr 59.3 15 0.00032 23.2 3.1 32 68-99 1-32 (86)
110 PF10882 bPH_5: Bacterial PH d 55.3 48 0.001 20.5 5.2 23 67-90 70-92 (100)
111 KOG4305|consensus 48.0 21 0.00045 32.0 3.2 30 75-104 660-689 (1029)
112 PLN02958 diacylglycerol kinase 46.9 33 0.00071 28.0 4.0 93 6-101 3-105 (481)
113 COG4026 Uncharacterized protei 46.5 30 0.00064 26.0 3.4 25 79-103 250-274 (290)
114 KOG0689|consensus 42.9 32 0.00069 28.1 3.4 27 78-104 337-363 (448)
115 KOG1737|consensus 42.2 16 0.00034 31.9 1.6 71 24-101 96-168 (799)
116 PF06115 DUF956: Domain of unk 38.9 1.2E+02 0.0026 20.3 6.9 67 26-95 27-95 (118)
117 PF06017 Myosin_TH1: Myosin ta 38.8 1.2E+02 0.0026 21.4 5.6 68 26-101 70-143 (199)
118 PF08394 Arc_trans_TRASH: Arch 36.1 46 0.00099 17.7 2.3 20 65-87 10-29 (37)
119 KOG0592|consensus 35.8 71 0.0015 27.0 4.3 66 26-101 470-537 (604)
120 PF12213 Dpoe2NT: DNA polymera 35.0 25 0.00053 21.4 1.3 21 85-105 35-55 (73)
121 cd01229 PH_etc2 Epithelial cel 33.9 1.5E+02 0.0033 20.1 6.0 55 46-100 67-126 (129)
122 KOG4047|consensus 30.8 40 0.00088 27.4 2.2 55 46-103 64-119 (429)
123 cd09013 BphC-JF8_N_like N-term 30.4 83 0.0018 19.5 3.3 25 78-102 64-88 (121)
124 PF11290 DUF3090: Protein of u 29.7 35 0.00077 24.3 1.5 14 74-87 16-29 (171)
125 KOG3492|consensus 28.7 54 0.0012 23.2 2.2 17 65-83 32-48 (180)
126 KOG3518|consensus 28.3 34 0.00073 27.4 1.3 35 70-105 402-436 (521)
127 cd09012 Glo_EDI_BRP_like_24 Th 28.0 1.3E+02 0.0028 18.6 3.9 24 78-101 70-93 (124)
128 cd07262 Glo_EDI_BRP_like_19 Th 27.6 99 0.0022 19.0 3.3 23 78-100 66-88 (123)
129 TIGR03847 conserved hypothetic 27.1 45 0.00098 23.9 1.7 14 74-87 18-31 (177)
130 PF06983 3-dmu-9_3-mt: 3-demet 26.6 1E+02 0.0022 19.9 3.3 49 44-100 47-95 (116)
131 PLN02204 diacylglycerol kinase 25.9 1.4E+02 0.0029 25.5 4.5 27 78-104 129-155 (601)
132 PF07831 PYNP_C: Pyrimidine nu 25.7 1.3E+02 0.0028 18.1 3.4 29 74-102 45-73 (75)
133 KOG3549|consensus 25.3 38 0.00083 27.2 1.2 38 65-102 223-261 (505)
134 COG4837 Uncharacterized protei 25.1 58 0.0012 21.2 1.8 24 81-104 19-42 (106)
135 PHA03001 putative virion core 24.7 57 0.0012 22.2 1.7 18 22-39 52-69 (132)
136 COG2004 RPS24A Ribosomal prote 24.0 1.6E+02 0.0034 19.4 3.7 32 65-101 17-48 (107)
137 KOG2461|consensus 23.8 30 0.00066 27.7 0.4 38 64-102 72-109 (396)
138 PF15243 ANAPC15: Anaphase-pro 23.6 93 0.002 19.9 2.5 22 87-108 34-55 (92)
139 cd01269 PLX Pollux (PLX) Phosp 23.4 1.3E+02 0.0028 20.5 3.3 24 78-101 102-125 (129)
140 PF13124 DUF3963: Protein of u 23.3 73 0.0016 16.9 1.6 12 88-99 14-25 (40)
141 PF02829 3H: 3H domain; Inter 23.0 1.7E+02 0.0037 18.7 3.7 26 75-100 69-94 (98)
142 PRK11370 YciI-like protein; Re 23.0 1.2E+02 0.0026 18.9 3.0 20 77-96 58-77 (99)
143 TIGR01629 rep_II_X phage/plasm 22.8 1.3E+02 0.0028 23.6 3.7 28 78-105 123-150 (345)
144 PF14506 CppA_N: CppA N-termin 22.7 1.1E+02 0.0025 20.6 2.9 23 65-87 94-116 (125)
145 PF14864 Alkyl_sulf_C: Alkyl s 22.5 1.3E+02 0.0027 19.6 3.1 32 21-52 44-75 (125)
146 PF02831 gpW: gpW; InterPro: 22.3 1.9E+02 0.0041 17.3 4.4 30 72-102 26-55 (68)
147 PF02174 IRS: PTB domain (IRS- 22.3 2.1E+02 0.0046 17.9 7.6 70 24-99 24-96 (100)
148 PF06560 GPI: Glucose-6-phosph 22.2 3E+02 0.0065 19.6 6.2 39 4-44 68-106 (182)
149 cd01272 FE65_N Fe65 Phosphotyr 22.0 2.7E+02 0.0059 19.1 6.6 64 21-87 52-118 (138)
150 PF06627 DUF1153: Protein of u 22.0 55 0.0012 20.9 1.2 17 84-100 60-76 (90)
151 PRK12866 YciI-like protein; Re 21.9 1.1E+02 0.0025 19.2 2.7 20 77-96 49-68 (97)
152 PF11964 SpoIIAA-like: SpoIIAA 21.8 61 0.0013 20.0 1.4 21 76-96 89-109 (109)
153 KOG3521|consensus 21.2 86 0.0019 27.3 2.5 26 77-102 502-527 (846)
154 smart00568 GRAM domain in gluc 21.2 1.6E+02 0.0035 16.2 3.6 28 26-53 26-54 (61)
155 COG5458 Uncharacterized conser 20.5 1.1E+02 0.0024 20.7 2.5 16 80-95 8-23 (144)
156 PF06138 Chordopox_E11: Chordo 20.0 78 0.0017 21.5 1.7 18 22-39 53-70 (130)
No 1
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.88 E-value=2.4e-22 Score=128.76 Aligned_cols=78 Identities=28% Similarity=0.399 Sum_probs=69.2
Q ss_pred ccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
.+++-|+||+++.|+||+++++++|.|.|+|++++|..+.+ .+++++|+|.+++.|+|+|+|+|++|+++||+||+.
T Consensus 19 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~---~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 19 KWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKE---VKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred CceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchh---cCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 34445899999999999999999999999999999876644 257899999988779999999999999999999987
Q ss_pred h
Q psy4640 100 A 100 (109)
Q Consensus 100 a 100 (109)
|
T Consensus 96 ~ 96 (96)
T cd01260 96 A 96 (96)
T ss_pred C
Confidence 6
No 2
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.83 E-value=7.8e-20 Score=119.34 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=64.3
Q ss_pred cCCceEEeeCCeEEEEcCCCCCcccEEEEcCC----eEEeec-CCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPS----YKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~----~~V~~~-~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
+++=|+||+++.|+||+++.+..|.|.|+|.. |.|... ++....+..++|.|.+++ |+|+|+|+|++|+++||+
T Consensus 16 wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~-Rty~l~a~s~~e~~~Wi~ 94 (103)
T cd01251 16 FKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPE-RKFLFACETEQDRREWIA 94 (103)
T ss_pred ceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCC-eEEEEECCCHHHHHHHHH
Confidence 34458999999999999999999999999964 445432 221112334599999885 999999999999999999
Q ss_pred HHHHhhh
Q psy4640 96 ALSLASI 102 (109)
Q Consensus 96 aI~~a~~ 102 (109)
||+.|..
T Consensus 95 ai~~v~~ 101 (103)
T cd01251 95 AFQNVLS 101 (103)
T ss_pred HHHHHhc
Confidence 9999864
No 3
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.81 E-value=2.2e-19 Score=116.50 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=66.5
Q ss_pred cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCC-cccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~-~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
+++=|+||+++.|+||+++.+..|.|.|+|.+++|...++.. ..+++++|.|.+++ |+|+|+|+|++|+++||+||+.
T Consensus 18 WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~-rt~~~~A~s~~e~~~Wi~ai~~ 96 (100)
T cd01233 18 WTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCTKH-RGYLFQALSDKEMIDWLYALNP 96 (100)
T ss_pred cEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEECCC-CEEEEEcCCHHHHHHHHHHhhh
Confidence 333489999999999999999999999999999887654421 12468999998765 9999999999999999999976
Q ss_pred h
Q psy4640 100 A 100 (109)
Q Consensus 100 a 100 (109)
.
T Consensus 97 ~ 97 (100)
T cd01233 97 L 97 (100)
T ss_pred h
Confidence 4
No 4
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.81 E-value=2.8e-19 Score=116.73 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=66.2
Q ss_pred ccccCCceEEeeCCeEEEEcCCCCCccc-EEEEcCCeE-EeecCCCC-cccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640 18 KSVGSDLDSIGSRNGLAVTDRFEEEKLL-GSILLPSYK-ISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRESMIQWM 94 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~yyk~~~d~~p~-G~I~L~~~~-V~~~~~~~-~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi 94 (109)
|.+.++ |++|+++.|+|||+..+.+|. |.|+|+.|. |..+.+.. ..+++++|+|.+|+ |+|||+|+|++|+++||
T Consensus 17 K~WkrR-wF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt~~l~A~se~e~e~WI 94 (101)
T cd01264 17 KRWKTR-YFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEEWL 94 (101)
T ss_pred ecceeE-EEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCC-ceEEEEeCCHHHHHHHH
Confidence 556665 899999999999998776666 999999996 55443321 12447999999887 99999999999999999
Q ss_pred HHHHHh
Q psy4640 95 NALSLA 100 (109)
Q Consensus 95 ~aI~~a 100 (109)
++|+.|
T Consensus 95 ~~i~~a 100 (101)
T cd01264 95 QCLNIA 100 (101)
T ss_pred HHHHhh
Confidence 999987
No 5
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.80 E-value=4.9e-19 Score=113.98 Aligned_cols=78 Identities=18% Similarity=0.097 Sum_probs=64.1
Q ss_pred ccccCCceEEeeC--CeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 18 KSVGSDLDSIGSR--NGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 18 ~~~~~~~~~vL~~--~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
|.+.+ =|+||++ +.||||+++.+.+|.|.|+|.++.+...+. .++++|.|.+++ |+|+|+|+|++||++||+
T Consensus 15 K~Wkk-RWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~----~~~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~ 88 (95)
T cd01265 15 RGRRS-RWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPR----EEKGRFEIHSNN-EVIALKASSDKQMNYWLQ 88 (95)
T ss_pred cCcee-EEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCC----CCCCEEEEEcCC-cEEEEECCCHHHHHHHHH
Confidence 34444 4899984 579999999999999999999987654332 236899998765 999999999999999999
Q ss_pred HHHHhh
Q psy4640 96 ALSLAS 101 (109)
Q Consensus 96 aI~~a~ 101 (109)
||+.+.
T Consensus 89 al~~~~ 94 (95)
T cd01265 89 ALQSKR 94 (95)
T ss_pred HHHhhc
Confidence 999863
No 6
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.80 E-value=5.9e-19 Score=115.74 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=62.2
Q ss_pred ceEEeeCCeEEEEcCCCCC--cccEEEEcCCeE-EeecCCCCc----ccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640 24 LDSIGSRNGLAVTDRFEEE--KLLGSILLPSYK-ISPCSSDDK----VFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 24 ~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~-V~~~~~~~~----~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a 96 (109)
=|+||++++|+||+++.+. .|.|.|+|.++. |+.+.+... .++.++|+|.+++ |+|||.|+|++|+++||+|
T Consensus 24 RwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-r~~yl~A~s~~er~~WI~a 102 (106)
T cd01238 24 RLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-GTLYVFAPTEELRKRWIKA 102 (106)
T ss_pred EEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-CeEEEEcCCHHHHHHHHHH
Confidence 4799999999999998764 899999999886 444443221 1357999999875 8999999999999999999
Q ss_pred HHHh
Q psy4640 97 LSLA 100 (109)
Q Consensus 97 I~~a 100 (109)
|+.+
T Consensus 103 i~~~ 106 (106)
T cd01238 103 LKQV 106 (106)
T ss_pred HHhC
Confidence 9863
No 7
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.80 E-value=1.1e-18 Score=117.07 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=69.2
Q ss_pred cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCc--------------------eEE
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM--------------------RTY 80 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~--------------------r~y 80 (109)
+++-|+||++++|+||+++++.+|.|.|+|.++.|..++. ..++++|+|..++. ++|
T Consensus 16 WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~---~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 92 (125)
T cd01252 16 WKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVED---PSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVY 92 (125)
T ss_pred eEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEccc---CCCCeeEEEECCccccccccccccccccccccCceEE
Confidence 3445899999999999999999999999999998877644 25679999876553 799
Q ss_pred EEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 81 YFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 81 ~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
+|+|+|++|+++||+||+.++...
T Consensus 93 ~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 93 RISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999988654
No 8
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.76 E-value=7.5e-18 Score=110.51 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=64.2
Q ss_pred CCcccccCCceEEee-CCeEEEEcCC-CCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHH
Q psy4640 15 SSRKSVGSDLDSIGS-RNGLAVTDRF-EEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 91 (109)
Q Consensus 15 ~~~~~~~~~~~~vL~-~~~L~yyk~~-~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~ 91 (109)
...|.+.++ |+||+ +..|+||+++ .+..|+|.|.|+.|. |..+. +..+++++|.|.+++ |+|||.|+|++|++
T Consensus 19 ~~~K~WkrR-WFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~--~~~~~~~~f~I~tp~-R~f~l~Aete~E~~ 94 (104)
T cd01236 19 HRSKRWQRR-WFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAE--ARTGQKFSICILTPD-KEHFIKAETKEEIS 94 (104)
T ss_pred eeeccccce-EEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecc--cccCCccEEEEECCC-ceEEEEeCCHHHHH
Confidence 345777776 88997 5788888776 478999999998886 44332 223457999999886 99999999999999
Q ss_pred HHHHHHHH
Q psy4640 92 QWMNALSL 99 (109)
Q Consensus 92 ~Wi~aI~~ 99 (109)
+||++|+.
T Consensus 95 ~Wi~~l~~ 102 (104)
T cd01236 95 WWLNMLMV 102 (104)
T ss_pred HHHHHHHh
Confidence 99999974
No 9
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.76 E-value=8.5e-18 Score=109.19 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=62.6
Q ss_pred ceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
=|++|+++.|+||+++. ..|.|+|+|.... |+.+.+. ...++|+|+|.+++ |+|||+|+|++|+++||+||+.+
T Consensus 24 RwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~-~~~~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 24 RYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDK-SFVNVDIITIVCED-DTMQLQFEAPVEATDWLNALEKQ 98 (98)
T ss_pred eEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCc-ccCCCceEEEEeCC-CeEEEECCCHHHHHHHHHHHhcC
Confidence 37899999999999886 7999999998875 4555442 23457999999986 89999999999999999999874
No 10
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.76 E-value=6.9e-18 Score=110.13 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=64.0
Q ss_pred ccccCCceEEeeCC------eEEEEcCCCC-----CcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcC
Q psy4640 18 KSVGSDLDSIGSRN------GLAVTDRFEE-----EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAAD 85 (109)
Q Consensus 18 ~~~~~~~~~vL~~~------~L~yyk~~~d-----~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~ 85 (109)
|.+.++ |+||+++ .|+||+++.+ ..|.|+|+|.+|. |...++ .+++|+|.|.+++ |+|+|+|+
T Consensus 12 K~~kkR-wFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d---~k~~~~f~i~t~d-r~f~l~ae 86 (101)
T cd01257 12 KSMHKR-FFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD---AKHRHLIALYTRD-EYFAVAAE 86 (101)
T ss_pred cCcEeE-EEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc---cccCeEEEEEeCC-ceEEEEeC
Confidence 566665 8999988 7999999864 7899999999996 443322 2457999999887 89999999
Q ss_pred CHHHHHHHHHHHHH
Q psy4640 86 TRESMIQWMNALSL 99 (109)
Q Consensus 86 s~~e~~~Wi~aI~~ 99 (109)
|++|+++||++|..
T Consensus 87 se~E~~~Wi~~i~~ 100 (101)
T cd01257 87 NEAEQDSWYQALLE 100 (101)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999964
No 11
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.75 E-value=1.2e-17 Score=108.45 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred cccCCceEEeeC----CeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCc-eEEEEEcCCHHHHHHH
Q psy4640 19 SVGSDLDSIGSR----NGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM-RTYYFAADTRESMIQW 93 (109)
Q Consensus 19 ~~~~~~~~vL~~----~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~-r~y~fsA~s~~e~~~W 93 (109)
+.+++.|++|.+ ++|+||+++.+.+|.|.|+|+++.|..+.+. ..+++|||+|..+.. .+||++|++ +|+++|
T Consensus 14 K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds-~~~r~~cFel~~~~~~~~y~~~a~~-~er~~W 91 (98)
T cd01245 14 KLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDS-LFGRPNCFQIVERALPTVYYSCRSS-EERDKW 91 (98)
T ss_pred cccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEcccc-ccCCCeEEEEecCCCCeEEEEeCCH-HHHHHH
Confidence 344556889976 9999999999999999999999988776552 236789999987753 699999999 999999
Q ss_pred HHHHHH
Q psy4640 94 MNALSL 99 (109)
Q Consensus 94 i~aI~~ 99 (109)
|++|+.
T Consensus 92 i~~l~~ 97 (98)
T cd01245 92 IESLQA 97 (98)
T ss_pred HHHHhc
Confidence 999986
No 12
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.74 E-value=2.4e-17 Score=105.57 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=62.2
Q ss_pred ccccCCceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 18 KSVGSDLDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
|.+.++ |+||+++.|+||+++.+ ..|.|.|+|.+|.|... + .+++.|.|.....|+|+|.|+|++|+++||+
T Consensus 13 k~Wk~R-wFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~-~----~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~ 86 (91)
T cd01247 13 NGWQDR-YFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH-E----FDENRFDISVNENVVWYLRAENSQSRLLWMD 86 (91)
T ss_pred CCCceE-EEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC-C----CCCCEEEEEeCCCeEEEEEeCCHHHHHHHHH
Confidence 444444 78999999999999876 45799999999977643 2 2357899976666999999999999999999
Q ss_pred HHHH
Q psy4640 96 ALSL 99 (109)
Q Consensus 96 aI~~ 99 (109)
||++
T Consensus 87 al~~ 90 (91)
T cd01247 87 SVVR 90 (91)
T ss_pred HHhh
Confidence 9985
No 13
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.74 E-value=3.2e-17 Score=102.72 Aligned_cols=76 Identities=22% Similarity=0.177 Sum_probs=65.7
Q ss_pred ccCCceEEeeCCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI 97 (109)
.+++.|+||+++.|+||+++.+. .|.|.|+|.+++|... + .++++|.|.+++.++|+|+|+|.+|+++||.||
T Consensus 14 ~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~-~----~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al 88 (91)
T cd01246 14 GWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISED-D----SDDKCFTIDTGGDKTLHLRANSEEERQRWVDAL 88 (91)
T ss_pred CceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEEC-C----CCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHH
Confidence 34456899999999999999887 8999999999987653 2 237899998887799999999999999999999
Q ss_pred HHh
Q psy4640 98 SLA 100 (109)
Q Consensus 98 ~~a 100 (109)
+.|
T Consensus 89 ~~a 91 (91)
T cd01246 89 ELA 91 (91)
T ss_pred HhC
Confidence 876
No 14
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.74 E-value=9.3e-18 Score=112.85 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=65.4
Q ss_pred CcccccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecC--CCCcccceeeEEEee--CCc-----------
Q psy4640 16 SRKSVGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCS--SDDKVFRKFSFKAEH--ANM----------- 77 (109)
Q Consensus 16 ~~~~~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~--~~~~~~k~~~F~i~~--~~~----------- 77 (109)
..|.|.+ -|+||++++|+||+.+.+ +.|+|.|+|.+|.+..+. +.+.+.+++.|.|.. +..
T Consensus 15 ~~k~W~R-RWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~ 93 (122)
T cd01263 15 GFGAWHR-RWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQC 93 (122)
T ss_pred CCCCceE-EEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeecc
Confidence 3355555 599999999999997776 679999999999865542 234568899999953 321
Q ss_pred -----e-EEEEEcCCHHHHHHHHHHHHHh
Q psy4640 78 -----R-TYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 78 -----r-~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
| -|+|+|||++|+++||+||+.|
T Consensus 94 ~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 94 RRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred CCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 1 2789999999999999999875
No 15
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.73 E-value=2.4e-17 Score=108.10 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=62.7
Q ss_pred cccCCceEEeeCCe-------EEEEcCCCCCcccEEEEcCCeEEeecCC---CCcccceeeEEEeeCCceEEEEEcCCHH
Q psy4640 19 SVGSDLDSIGSRNG-------LAVTDRFEEEKLLGSILLPSYKISPCSS---DDKVFRKFSFKAEHANMRTYYFAADTRE 88 (109)
Q Consensus 19 ~~~~~~~~vL~~~~-------L~yyk~~~d~~p~G~I~L~~~~V~~~~~---~~~~~k~~~F~i~~~~~r~y~fsA~s~~ 88 (109)
.+.+ =|+||+++. |+||+++.+++|.|.|+|+.|.+..... .......+.|.|.++. |+|||+|+|++
T Consensus 18 ~Wkr-RwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~-r~y~l~A~s~e 95 (108)
T cd01266 18 KWVR-RYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIV-RDLYLVAKNEE 95 (108)
T ss_pred CcEE-EEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCC-ccEEEEECCHH
Confidence 4444 389999876 6999999999999999999986543211 1112346789998765 99999999999
Q ss_pred HHHHHHHHHHHh
Q psy4640 89 SMIQWMNALSLA 100 (109)
Q Consensus 89 e~~~Wi~aI~~a 100 (109)
||++||++|+..
T Consensus 96 e~~~Wi~~I~~~ 107 (108)
T cd01266 96 EMTLWVNCICKL 107 (108)
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 16
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.73 E-value=7.9e-17 Score=103.43 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=62.8
Q ss_pred ccccCCceEEeeC--CeEEEEcCCCCCcccEEEEcCCeE-EeecCCC----CcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640 18 KSVGSDLDSIGSR--NGLAVTDRFEEEKLLGSILLPSYK-ISPCSSD----DKVFRKFSFKAEHANMRTYYFAADTRESM 90 (109)
Q Consensus 18 ~~~~~~~~~vL~~--~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~----~~~~k~~~F~i~~~~~r~y~fsA~s~~e~ 90 (109)
+.+.+ -|+||.+ +.|+||+++.+.+|.|.|+|.+++ |....+. ....+.++|.|.++ .|+|+|.|+|++|+
T Consensus 13 k~Wkk-RwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~-~r~~~~~a~s~~e~ 90 (101)
T cd01235 13 KGWKP-RWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS-KRTYNFLAENINEA 90 (101)
T ss_pred CCccc-eEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC-CceEEEECCCHHHH
Confidence 34444 4899984 599999999999999999998875 4432221 11134578998765 59999999999999
Q ss_pred HHHHHHHHHhh
Q psy4640 91 IQWMNALSLAS 101 (109)
Q Consensus 91 ~~Wi~aI~~a~ 101 (109)
++||+||+.++
T Consensus 91 ~~Wi~ai~~~i 101 (101)
T cd01235 91 QRWKEKIQQCI 101 (101)
T ss_pred HHHHHHHHhhC
Confidence 99999998864
No 17
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.72 E-value=9.7e-17 Score=101.04 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=66.3
Q ss_pred cccCCceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a 96 (109)
..+++-|+||+++.|+||+++.+ ..+.+.|+|.+|+|...+.. ..++++|.|.+++ ++|+|+|+|++|+++||.|
T Consensus 14 ~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~--~~~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~a 90 (94)
T cd01250 14 KEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQ--PDRRFCFEVISPT-KTWHFQADSEEERDDWISA 90 (94)
T ss_pred CCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccc--cCCceEEEEEcCC-cEEEEECCCHHHHHHHHHH
Confidence 34455689999999999999876 67889999999988766542 1368999999877 9999999999999999999
Q ss_pred HHHh
Q psy4640 97 LSLA 100 (109)
Q Consensus 97 I~~a 100 (109)
|+.+
T Consensus 91 l~~~ 94 (94)
T cd01250 91 IQES 94 (94)
T ss_pred HhcC
Confidence 9864
No 18
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.70 E-value=2.3e-16 Score=102.24 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=64.0
Q ss_pred ccCCceEEeeCCeEEEEcCCCCC--cccE--EEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEEE--KLLG--SILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d~--~p~G--~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
.++..|+||+++.|+||+++... .+.+ .|+|.++.|..+.+. .+++++|.|..++.++|+|+|+|++||++||.
T Consensus 22 ~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~--~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~ 99 (104)
T cd01253 22 SWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDY--TKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVR 99 (104)
T ss_pred CcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCc--ccCceEEEEEecCCCEEEEECCCHHHHHHHHH
Confidence 34556899999999999988643 4445 777888888776442 35679999987778999999999999999999
Q ss_pred HHHHh
Q psy4640 96 ALSLA 100 (109)
Q Consensus 96 aI~~a 100 (109)
||+.|
T Consensus 100 aL~~~ 104 (104)
T cd01253 100 ALKSA 104 (104)
T ss_pred HHhcC
Confidence 99864
No 19
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.69 E-value=2.9e-16 Score=104.91 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=69.7
Q ss_pred ccCCceEEeeCCeEEEEcCCCC-------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEE-------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ 92 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d-------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~ 92 (109)
-|+.+++||+++.|+.|||+.. +.+...|.|.++.++++.+. .+++++|+|..++.+.|+|+|.|++||++
T Consensus 25 ~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy--~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~ 102 (117)
T cd01230 25 SWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDY--SKKPHVFRLRTADWREFLFQTSSLKELQS 102 (117)
T ss_pred cceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccc--cCCCcEEEEEcCCCCEEEEECCCHHHHHH
Confidence 4445679999999999999964 45678999999887665443 47899999999888999999999999999
Q ss_pred HHHHHHHhhhhc
Q psy4640 93 WMNALSLASILQ 104 (109)
Q Consensus 93 Wi~aI~~a~~~~ 104 (109)
||++|+.|+...
T Consensus 103 Wi~~I~~~~~~~ 114 (117)
T cd01230 103 WIERINVVAAAF 114 (117)
T ss_pred HHHHHHHHHHhc
Confidence 999999987543
No 20
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.69 E-value=7e-16 Score=96.87 Aligned_cols=80 Identities=25% Similarity=0.315 Sum_probs=69.4
Q ss_pred CCceEEeeCCeEEEEcCCC---CCcccEEEEcCCeEEeecCCCC---cccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 22 SDLDSIGSRNGLAVTDRFE---EEKLLGSILLPSYKISPCSSDD---KVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 22 ~~~~~vL~~~~L~yyk~~~---d~~p~G~I~L~~~~V~~~~~~~---~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
++.|+||.++.|+||+++. +..|.+.|+|.++.|....+.+ ....+++|.|.+++.++|+|+|+|++|+.+||+
T Consensus 18 k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~ 97 (104)
T PF00169_consen 18 KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQ 97 (104)
T ss_dssp EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHH
Confidence 3358999999999999998 6899999999999987765532 235689999999887799999999999999999
Q ss_pred HHHHhh
Q psy4640 96 ALSLAS 101 (109)
Q Consensus 96 aI~~a~ 101 (109)
+|+.|+
T Consensus 98 ~i~~~~ 103 (104)
T PF00169_consen 98 AIQKAI 103 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999986
No 21
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.65 E-value=8.2e-16 Score=99.50 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=69.5
Q ss_pred ccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC-------CceEEEEEcCCHHHHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA-------NMRTYYFAADTRESMIQ 92 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~-------~~r~y~fsA~s~~e~~~ 92 (109)
..++.|+||+++||+|||+.++++|.|+|||+|..+..++.. ..+++|+|.|-.| +.++.-++|+|++|++.
T Consensus 18 gsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~g-f~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vds 96 (110)
T cd01256 18 GSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGG-FMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDS 96 (110)
T ss_pred CCcceEEEEecceeeeecccccccccceeeccccEEEeeccc-ccCCCcEEEEEcCcccccccchheeeecCCCHHHHHH
Confidence 346678999999999999999999999999999999887653 3567899999755 35677899999999999
Q ss_pred HHHHHHHhh
Q psy4640 93 WMNALSLAS 101 (109)
Q Consensus 93 Wi~aI~~a~ 101 (109)
|.+.+-+|-
T Consensus 97 wkasflrag 105 (110)
T cd01256 97 WKASFLRAG 105 (110)
T ss_pred HHHHHHhcc
Confidence 999987764
No 22
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.65 E-value=1.3e-15 Score=99.95 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=65.2
Q ss_pred cccCCceEEeeCCeEEEEcCCCCCc--ccEEEEcCCeEEeecCCCCcccceeeEEEeeC---CceEEEEEcCCHHHHHHH
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEEEK--LLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---NMRTYYFAADTRESMIQW 93 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d~~--p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~---~~r~y~fsA~s~~e~~~W 93 (109)
+..++-|++|+++.|+|||++.+.. |.+.|.|.+|+|...... ..++|+|++..| +.|+|+|.|+|++++.+|
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~--~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~W 95 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNV--AQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKW 95 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccc--cccceEEEEecCCccCCeEEEEECCCHHHHHHH
Confidence 4466678999999999999887654 556666689987653321 244699998743 468999999999999999
Q ss_pred HHHHHHhhhh
Q psy4640 94 MNALSLASIL 103 (109)
Q Consensus 94 i~aI~~a~~~ 103 (109)
|+|++.|+..
T Consensus 96 maa~rlas~g 105 (106)
T cd01237 96 MAACRLASKG 105 (106)
T ss_pred HHHHHHhhCC
Confidence 9999999863
No 23
>KOG0930|consensus
Probab=99.63 E-value=1.3e-15 Score=114.62 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=69.1
Q ss_pred ccccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeC---------------------C
Q psy4640 18 KSVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHA---------------------N 76 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~---------------------~ 76 (109)
|+|-+ -|+||++||||||.-.+|++|.|.|+|++..|..+++ .++++||+|..+ .
T Consensus 275 ktWKr-RWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~Ved---P~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~ 350 (395)
T KOG0930|consen 275 KTWKR-RWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED---PKKPNCFELYIPSNKGQVIKACKTEADGRVVEGN 350 (395)
T ss_pred cchhh-eeEEeecceeeeeeeccCCCCCcceeccccceeeccC---CCCCCeEEEecCCCCcCeeeeecccCCceeEecc
Confidence 44444 5999999999999999999999999999998887765 478999998532 2
Q ss_pred ceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 77 MRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 77 ~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
+-.|-++|.+.+|+++||++|+.++.
T Consensus 351 H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 351 HSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred ceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 45899999999999999999998764
No 24
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.61 E-value=5.6e-15 Score=98.61 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=57.3
Q ss_pred cCCceEEeeCCeEEEEcCCC--------------CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCC
Q psy4640 21 GSDLDSIGSRNGLAVTDRFE--------------EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADT 86 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~--------------d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s 86 (109)
++.+++||++..|+.||++. ...|.+.|.|.++.+..+.+ ..+|+|+|+|.+++...|+|+|.|
T Consensus 26 Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~d--Y~Kr~~VFrL~~~dg~e~Lfqa~~ 103 (119)
T PF15410_consen 26 WKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASD--YTKRKNVFRLRTADGSEYLFQASD 103 (119)
T ss_dssp EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETT--BTTCSSEEEEE-TTS-EEEEE-SS
T ss_pred ccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcc--cccCCeEEEEEeCCCCEEEEECCC
Confidence 34466899999999999832 23466789999998887654 457899999999888999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy4640 87 RESMIQWMNALSLAS 101 (109)
Q Consensus 87 ~~e~~~Wi~aI~~a~ 101 (109)
++||++||++|+.++
T Consensus 104 ~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 104 EEEMNEWIDAINYAA 118 (119)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999999864
No 25
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.55 E-value=7.9e-14 Score=93.38 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=66.5
Q ss_pred ccCCceEEeeCCeEEEEcCCCCCcccEEEEcC-CeEEeecCCC---------CcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEEEKLLGSILLP-SYKISPCSSD---------DKVFRKFSFKAEHANMRTYYFAADTRES 89 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~-~~~V~~~~~~---------~~~~k~~~F~i~~~~~r~y~fsA~s~~e 89 (109)
.++.-|+||++..|.||+++.+..|.|.|.|+ ++.|+..... +...+.+.|+|.++. |+|.|.|+|+.+
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~-R~~~l~a~s~~~ 110 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSN-RSLKLKCKSSRK 110 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCC-cEEEEEeCCHHH
Confidence 34556899999999999999999999999994 7777654331 223567999998776 999999999999
Q ss_pred HHHHHHHHHHh
Q psy4640 90 MIQWMNALSLA 100 (109)
Q Consensus 90 ~~~Wi~aI~~a 100 (109)
+++||++|+.|
T Consensus 111 ~~~Wi~~i~~a 121 (121)
T cd01254 111 LKQWMASIEDA 121 (121)
T ss_pred HHHHHHHHHhC
Confidence 99999999976
No 26
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.53 E-value=8.9e-14 Score=90.38 Aligned_cols=84 Identities=19% Similarity=0.155 Sum_probs=68.6
Q ss_pred CcccccCCceEEeeCCeEEEEcCCCCC---cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640 16 SRKSVGSDLDSIGSRNGLAVTDRFEEE---KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ 92 (109)
Q Consensus 16 ~~~~~~~~~~~vL~~~~L~yyk~~~d~---~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~ 92 (109)
.+|....+.+.++.|.+||+.+...+. ++.|.|+|++++|+.+++. .+.+|+|.|..+. ++|.|+|.|++|+++
T Consensus 12 ~~k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~--~~~~~~F~I~~~~-ks~~l~A~s~~Ek~~ 88 (99)
T cd01220 12 SKKGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE--WGVPHCFTIFGGQ-CAITVAASTRAEKEK 88 (99)
T ss_pred eCCCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCC--cCCceeEEEEcCC-eEEEEECCCHHHHHH
Confidence 445556667788999999988876554 5899999999998876542 2457999998664 899999999999999
Q ss_pred HHHHHHHhhh
Q psy4640 93 WMNALSLASI 102 (109)
Q Consensus 93 Wi~aI~~a~~ 102 (109)
||++|+.|+.
T Consensus 89 Wi~~i~~aI~ 98 (99)
T cd01220 89 WLADLSKAIA 98 (99)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 27
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.50 E-value=1.5e-13 Score=89.41 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=56.4
Q ss_pred ccccCCceEEee-CCeEEEEcCCCCCcccEEEEcCCeEEeecCC--CCcccceeeEEEee-----CCceEEEEEcCCHHH
Q psy4640 18 KSVGSDLDSIGS-RNGLAVTDRFEEEKLLGSILLPSYKISPCSS--DDKVFRKFSFKAEH-----ANMRTYYFAADTRES 89 (109)
Q Consensus 18 ~~~~~~~~~vL~-~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~--~~~~~k~~~F~i~~-----~~~r~y~fsA~s~~e 89 (109)
+.+.+ -|++|+ ++.|+||+++....+.|.|+|.+++|..+.. .+ ..++++|.|.. ...|+| +|+|++|
T Consensus 15 ~~Wk~-R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~-~~~~~~F~i~~~~~~~~~~r~f--~a~s~ee 90 (102)
T cd01241 15 KTWRP-RYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTE-RPRPNTFIIRCLQWTTVIERTF--HVESPEE 90 (102)
T ss_pred CCCee-EEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeecc-CCCcceEEEEeccCCcccCEEE--EeCCHHH
Confidence 34444 489998 7889988887655556888888877644322 11 24568999962 123544 6999999
Q ss_pred HHHHHHHHHHhh
Q psy4640 90 MIQWMNALSLAS 101 (109)
Q Consensus 90 ~~~Wi~aI~~a~ 101 (109)
+++||+||+.++
T Consensus 91 ~~eWi~ai~~v~ 102 (102)
T cd01241 91 REEWIHAIQTVA 102 (102)
T ss_pred HHHHHHHHHhhC
Confidence 999999998763
No 28
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.49 E-value=7.6e-13 Score=81.48 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=67.0
Q ss_pred ccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a 96 (109)
.++..+++|.+++|+||+++.+ ..+.+.|+|.++.|....+.......++|.|..++..+|+|.|+|++|+++|+++
T Consensus 17 ~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~ 96 (102)
T smart00233 17 SWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDA 96 (102)
T ss_pred CceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHH
Confidence 3445689999999999998876 5789999999998776544211235789999887756999999999999999999
Q ss_pred HHHhh
Q psy4640 97 LSLAS 101 (109)
Q Consensus 97 I~~a~ 101 (109)
|+.++
T Consensus 97 i~~~~ 101 (102)
T smart00233 97 LRKAI 101 (102)
T ss_pred HHHhh
Confidence 99875
No 29
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.43 E-value=2.6e-12 Score=78.38 Aligned_cols=78 Identities=23% Similarity=0.231 Sum_probs=65.2
Q ss_pred cCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHH
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI 97 (109)
+.+.+++|.++.|++|+...+ ..+.+.|+|.++.|....... +..++|.|...+.+.|+|.|+|++|+++|+++|
T Consensus 16 w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~--~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l 93 (96)
T cd00821 16 WKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS--GRKNCFEIRTPDGRSYLLQAESEEEREEWIEAL 93 (96)
T ss_pred ccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcC--CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHH
Confidence 345688999999999998876 689999999998887654421 357899998766589999999999999999999
Q ss_pred HHh
Q psy4640 98 SLA 100 (109)
Q Consensus 98 ~~a 100 (109)
+.|
T Consensus 94 ~~~ 96 (96)
T cd00821 94 QSA 96 (96)
T ss_pred hcC
Confidence 864
No 30
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.36 E-value=1.4e-11 Score=75.63 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=65.7
Q ss_pred cccCCceEEeeCCeEEEEcCCCCCccc-EEEEcCCeEEeecCCCCcccceeeEEEeeCC--ceEEEEEcCCHHHHHHHHH
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEEEKLL-GSILLPSYKISPCSSDDKVFRKFSFKAEHAN--MRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~-G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~--~r~y~fsA~s~~e~~~Wi~ 95 (109)
..++..+++|.++.|+||+++.+..+. +.++|.+.+|....+.+ ..+++|.|.... .+.|+|+|+|++|++.|++
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~--~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~ 94 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGS--DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVE 94 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCC--CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHH
Confidence 344456899999999999999887777 89999988876654321 457899998774 7999999999999999999
Q ss_pred HHHHh
Q psy4640 96 ALSLA 100 (109)
Q Consensus 96 aI~~a 100 (109)
+|+.|
T Consensus 95 al~~~ 99 (99)
T cd00900 95 ALQQA 99 (99)
T ss_pred HHhcC
Confidence 99875
No 31
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.34 E-value=1.6e-11 Score=79.66 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=60.1
Q ss_pred eEEeeCCeEEEEcCCC-----CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 25 DSIGSRNGLAVTDRFE-----EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 25 ~~vL~~~~L~yyk~~~-----d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
+..|-++.|.|++... .-.+.+.|+|.++.|....+ ...+|+|.|..++ |+|+++|+|++|+++||+||+.
T Consensus 22 yffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~---~~~~~~F~I~~~~-rsf~l~A~s~eEk~~W~~ai~~ 97 (101)
T cd01219 22 YLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN---LERPHSFLVSGKQ-RCLELQARTQKEKNDWVQAIFS 97 (101)
T ss_pred EEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC---CCcCceEEEecCC-cEEEEEcCCHHHHHHHHHHHHH
Confidence 6788777999998532 23567899999998875432 2568999998766 9999999999999999999999
Q ss_pred hhh
Q psy4640 100 ASI 102 (109)
Q Consensus 100 a~~ 102 (109)
|+.
T Consensus 98 ~i~ 100 (101)
T cd01219 98 IID 100 (101)
T ss_pred Hhh
Confidence 874
No 32
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.22 E-value=2.3e-10 Score=73.13 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=58.7
Q ss_pred eEEe--eCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 25 DSIG--SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 25 ~~vL--~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
++|| ..+.|-||+++++....|.|+|..+.|+.- . +...|.|.. +..+|+|.|.|++|.+.|++||+.|
T Consensus 18 yFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~-~-----~~~~I~ids-g~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 18 YFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN-K-----KSRRIDIDS-GDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred EEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec-C-----CCCEEEEEc-CCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 5788 999999999998888999999988876542 2 245789875 5689999999999999999999986
No 33
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.03 E-value=1.9e-09 Score=71.29 Aligned_cols=85 Identities=18% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCCCcccccCCceEEee-CCeEEEEcCCCC-------------CcccEEEEcC--CeEEee---cCCCCcccceeeEEEe
Q psy4640 13 SPSSRKSVGSDLDSIGS-RNGLAVTDRFEE-------------EKLLGSILLP--SYKISP---CSSDDKVFRKFSFKAE 73 (109)
Q Consensus 13 ~~~~~~~~~~~~~~vL~-~~~L~yyk~~~d-------------~~p~G~I~L~--~~~V~~---~~~~~~~~k~~~F~i~ 73 (109)
+++.++.+.++ |+||. ++.|.|||.+.+ ....|.+... -+.+.. ..+. ...-..+|.|.
T Consensus 9 ~~~~~kgWk~R-wFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~ 86 (112)
T PF15413_consen 9 GNKFGKGWKKR-WFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPF-GEIHLKVFSIF 86 (112)
T ss_dssp -TTS-S--EEE-EEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T---SS-SSEEEEEE
T ss_pred cCCCCcCcccc-EEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcc-cCcCCCCcEEE
Confidence 34444545554 78888 999999999332 2233333321 111111 1111 11123567776
Q ss_pred eCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 74 HANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 74 ~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
++ .|+|+|.|++.+|+.+||+||..|
T Consensus 87 T~-~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 87 TP-TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -S-S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CC-CcEEEEEECCHHHHHHHHHHHHhC
Confidence 66 589999999999999999999876
No 34
>KOG3531|consensus
Probab=98.88 E-value=8.4e-10 Score=92.40 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=75.9
Q ss_pred cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~ 98 (109)
+.+-+||.|++.-|||+||+-+|..|+.++||-||+|.+..+.+...|.|+|++.... ..|||.|++.-..++||+.|+
T Consensus 938 sgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~-hvyffraes~yt~~rw~evi~ 1016 (1036)
T KOG3531|consen 938 SGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKS-HVYFFRAESYYTFERWMEVIT 1016 (1036)
T ss_pred ccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeehhh-hHHHHhhhhhhhhhhHHHHhh
Confidence 4566789999999999999999999999999999999876666677889999998876 589999999999999999999
Q ss_pred Hhhhhc
Q psy4640 99 LASILQ 104 (109)
Q Consensus 99 ~a~~~~ 104 (109)
.|+..+
T Consensus 1017 ~a~~s~ 1022 (1036)
T KOG3531|consen 1017 DAPSSA 1022 (1036)
T ss_pred cCCccC
Confidence 987654
No 35
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.82 E-value=7.3e-08 Score=63.19 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=59.6
Q ss_pred cccccCCceEEeeCCeEEEEcCC---CCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640 17 RKSVGSDLDSIGSRNGLAVTDRF---EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 93 (109)
Q Consensus 17 ~~~~~~~~~~vL~~~~L~yyk~~---~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W 93 (109)
+|..-.+ +..|=.+.|.|=+-. ..=+..+.|+|+++.|+...+. ..-+++|.|.++. ++|.++|+|++|..+|
T Consensus 15 rk~~~~R-~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~--~~~~n~f~I~~~~-kSf~v~A~s~~eK~eW 90 (104)
T cd01218 15 RKKPKQR-QFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDD--GIERNGWIIKTPT-KSFAVYAATETEKREW 90 (104)
T ss_pred cCCCceE-EEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCc--ccccceEEEecCC-eEEEEEcCCHHHHHHH
Confidence 3333334 355556677774321 1124568999999998766542 2347899998775 8999999999999999
Q ss_pred HHHHHHhhhh
Q psy4640 94 MNALSLASIL 103 (109)
Q Consensus 94 i~aI~~a~~~ 103 (109)
|++|+.|+..
T Consensus 91 l~~i~~ai~~ 100 (104)
T cd01218 91 MLHINKCVTD 100 (104)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 36
>KOG0932|consensus
Probab=98.79 E-value=2.5e-09 Score=86.85 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=61.3
Q ss_pred ccCCceEEeeCCeEEEEcCCCC-Cc------ccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHH
Q psy4640 20 VGSDLDSIGSRNGLAVTDRFEE-EK------LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQ 92 (109)
Q Consensus 20 ~~~~~~~vL~~~~L~yyk~~~d-~~------p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~ 92 (109)
.|+.|+.||++-.||+-||+-. .+ .+..|.+.-.-.+.+. |..+|+|+|+|.+.+.|.|.|+|.|.+||+.
T Consensus 531 gWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~At--dY~KKp~Vf~lrtAdwrv~LFQaps~eEmqs 608 (774)
T KOG0932|consen 531 GWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPAT--DYSKKPHVFKLRTADWRVFLFQAPSQEEMQS 608 (774)
T ss_pred hHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCc--ccccCCceEEEEeccceeEEEeCCCHHHHHH
Confidence 3444567999999999997632 11 2233444333333333 4568899999999999999999999999999
Q ss_pred HHHHHHHhhhhc
Q psy4640 93 WMNALSLASILQ 104 (109)
Q Consensus 93 Wi~aI~~a~~~~ 104 (109)
||+.|+.++-..
T Consensus 609 Wi~rIN~vAA~f 620 (774)
T KOG0932|consen 609 WIERINLVAAAF 620 (774)
T ss_pred HHHHHHHHHHhc
Confidence 999999887543
No 37
>KOG3640|consensus
Probab=98.68 E-value=2.6e-08 Score=84.41 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=69.7
Q ss_pred CccccCCCCCc-ccccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeEEeecCC--CCcccceeeEEEee--C---
Q psy4640 7 DFLSSSSPSSR-KSVGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYKISPCSS--DDKVFRKFSFKAEH--A--- 75 (109)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~V~~~~~--~~~~~k~~~F~i~~--~--- 75 (109)
+||.=..-.++ +.|++ -||+|.++++.|+|.+.| +.|.|.|+|..|+-..+.+ .|-+.+++.|.|.. |
T Consensus 994 GFLtmfed~sgfGaWhR-yWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~ 1072 (1116)
T KOG3640|consen 994 GFLTMFEDGSGFGAWHR-YWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLED 1072 (1116)
T ss_pred eeeeeeeccCCCchhhh-hhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEeeccccc
Confidence 45544333333 44555 599999999999997665 4699999999997443333 34567889999872 1
Q ss_pred -------Cce-EEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 76 -------NMR-TYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 76 -------~~r-~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
..| -..|+||+.+|++.|+.+|+.+..
T Consensus 1073 Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1073 DQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred ccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 133 579999999999999999998764
No 38
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.59 E-value=1.2e-06 Score=57.92 Aligned_cols=84 Identities=11% Similarity=0.085 Sum_probs=61.0
Q ss_pred ccccCCceEEeeCCeEEEEcCCCCC---cccEEEEcCC-eEEeecCCC-----CcccceeeEEEee-CCceEEEEEcCCH
Q psy4640 18 KSVGSDLDSIGSRNGLAVTDRFEEE---KLLGSILLPS-YKISPCSSD-----DKVFRKFSFKAEH-ANMRTYYFAADTR 87 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~yyk~~~d~---~p~G~I~L~~-~~V~~~~~~-----~~~~k~~~F~i~~-~~~r~y~fsA~s~ 87 (109)
|..+.+-+.||.+..|++|..+++. .|...+.|.. +.|..+... +...-++-|+|.. +..++.+|-|+|+
T Consensus 17 k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~ 96 (112)
T cd01242 17 KPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQT 96 (112)
T ss_pred cCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCc
Confidence 3445555789999999999987653 4778888854 445444332 2223367899864 3469999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy4640 88 ESMIQWMNALSLAS 101 (109)
Q Consensus 88 ~e~~~Wi~aI~~a~ 101 (109)
+|.+.|+.||.+-+
T Consensus 97 ~ek~kWV~~L~~~~ 110 (112)
T cd01242 97 DEQNKWVSRLVKKI 110 (112)
T ss_pred hHHHHHHHHHHHhc
Confidence 99999999998754
No 39
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.48 E-value=1.2e-06 Score=58.24 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=62.8
Q ss_pred cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCC--CcccceeeEEEeeCCceEEEEEcC----------
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSD--DKVFRKFSFKAEHANMRTYYFAAD---------- 85 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~--~~~~k~~~F~i~~~~~r~y~fsA~---------- 85 (109)
..+++.+-+|...+|-+|++++.+++-..|||.+. .|+.+... ......|||+|.+.. ++||...+
T Consensus 14 ~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~-~vY~VG~~~~~~~~~~~~ 92 (117)
T cd01239 14 NRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTT-NVYFVGGEDYHAFSGGPP 92 (117)
T ss_pred cceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecC-EEEEecccccccCCCccc
Confidence 45567788999999999999999999999999876 45543221 112468999999865 89999664
Q ss_pred ----------CHHHHHHHHHHHHHh
Q psy4640 86 ----------TRESMIQWMNALSLA 100 (109)
Q Consensus 86 ----------s~~e~~~Wi~aI~~a 100 (109)
..+..+.|-.||+.|
T Consensus 93 ~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 93 KKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred CCCCcccccchhHHHHHHHHHHhcC
Confidence 345679999999976
No 40
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.46 E-value=3.7e-07 Score=59.82 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=40.4
Q ss_pred EEEEcCCeEEeecCCCCcccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 46 GSILLPSYKISPCSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
-.|.|..|.+...+.. .|+|||.|..+. ..++.|+|+|++|+..||+|+..
T Consensus 52 e~~~l~sc~~r~~~~~---dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 52 ETLTLKSCSRRKTESI---DKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred eEEeeeeccccccCCc---cceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 3566778888776664 578999997654 23899999999999999999853
No 41
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.39 E-value=4.7e-06 Score=55.33 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=54.5
Q ss_pred eEEeeCCeEEEEcCCCC-----------CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640 25 DSIGSRNGLAVTDRFEE-----------EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 93 (109)
Q Consensus 25 ~~vL~~~~L~yyk~~~d-----------~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W 93 (109)
+.-|=++.|.|=|.... =+..+.|+|.++.|...++.+ .-++.|.|.+.+.+.|.|+|.|++|.++|
T Consensus 24 ~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~--~~knaF~I~~~~~~s~~l~Akt~eeK~~W 101 (112)
T cd01261 24 HVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS--EYKNAFEIILKDGNSVIFSAKNAEEKNNW 101 (112)
T ss_pred EEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc--ccCceEEEEcCCCCEEEEEECCHHHHHHH
Confidence 34455666666553222 123466999998887654422 34789999875568999999999999999
Q ss_pred HHHHHHhhh
Q psy4640 94 MNALSLASI 102 (109)
Q Consensus 94 i~aI~~a~~ 102 (109)
|++|..+..
T Consensus 102 m~~l~~~~~ 110 (112)
T cd01261 102 MAALISVQT 110 (112)
T ss_pred HHHHHHHhc
Confidence 999998753
No 42
>KOG2059|consensus
Probab=98.39 E-value=4.4e-07 Score=75.32 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=67.4
Q ss_pred CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
++.|+-|+...|.|-|++. ..|.+.|||.+.. |+.++++ ..+.+++|+|++++ |+.||+|.+-.|.++|+++|+++
T Consensus 587 KKryf~LT~~~Ls~~Ksp~-~q~~~~Ipl~nI~avEklee~-sF~~knv~qVV~~d-rtly~Q~~n~vEandWldaL~kv 663 (800)
T KOG2059|consen 587 KKRYFRLTTEELSYAKSPG-KQPIYTIPLSNIRAVEKLEEK-SFKMKNVFQVVHTD-RTLYVQAKNCVEANDWLDALRKV 663 (800)
T ss_pred hheEEEeccceeEEecCCc-cCcccceeHHHHHHHHHhhhh-ccCCCceEEEEecC-cceeEecCCchHHHHHHHHHHHH
Confidence 3456899999999999995 7899999999875 5555443 34668999999987 89999999999999999999998
Q ss_pred hhhc
Q psy4640 101 SILQ 104 (109)
Q Consensus 101 ~~~~ 104 (109)
+...
T Consensus 664 s~~N 667 (800)
T KOG2059|consen 664 SCCN 667 (800)
T ss_pred hccC
Confidence 7544
No 43
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.33 E-value=1.2e-05 Score=53.98 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=58.9
Q ss_pred ccccCCceEEeeCCeEEEEcCCCCC------cccEEEEcC--CeEEeecCCC-----CcccceeeEEEee------CCce
Q psy4640 18 KSVGSDLDSIGSRNGLAVTDRFEEE------KLLGSILLP--SYKISPCSSD-----DKVFRKFSFKAEH------ANMR 78 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~yyk~~~d~------~p~G~I~L~--~~~V~~~~~~-----~~~~k~~~F~i~~------~~~r 78 (109)
|+.+.+-+.||.+..|++|..++++ .+.-.|.|. .+.|..+... +...-++-|+|.. ...+
T Consensus 17 krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~ 96 (122)
T cd01243 17 KKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKC 96 (122)
T ss_pred ccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCcc
Confidence 3444555789999999999977643 344667783 4667655432 2223367899863 2357
Q ss_pred EEEEEcCCHHHHHHHHHHHHHh
Q psy4640 79 TYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 79 ~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
+.||-|+|+.|.++|+.||...
T Consensus 97 ~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 97 STLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEeCCchHHHHHHHHHHHH
Confidence 8999999999999999999863
No 44
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.27 E-value=3.3e-06 Score=56.00 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCCcccccCCceEEeeCCeEEEEcCCCCCccc---EEEEcCCeEEeecCC---CCcccceeeEEEeeCC------ceEEE
Q psy4640 14 PSSRKSVGSDLDSIGSRNGLAVTDRFEEEKLL---GSILLPSYKISPCSS---DDKVFRKFSFKAEHAN------MRTYY 81 (109)
Q Consensus 14 ~~~~~~~~~~~~~vL~~~~L~yyk~~~d~~p~---G~I~L~~~~V~~~~~---~~~~~k~~~F~i~~~~------~r~y~ 81 (109)
...+|+-+++.+++|+...|||+-....+++. ....+++..|=..-. .-+...+|+|.|.++. .-.-+
T Consensus 9 K~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~~s~~ik~ 88 (114)
T cd01259 9 KADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSKGSQSIKY 88 (114)
T ss_pred ccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcccchhhee
Confidence 34566777778999999999999866554443 445555554421111 1112235788885432 23569
Q ss_pred EEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 82 FAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 82 fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
|+|||++.+..||.||+-|-+..
T Consensus 89 lCaeDe~t~~~W~ta~Ri~KyG~ 111 (114)
T cd01259 89 LCAEDLPTLDRWLTAIRIAKYGK 111 (114)
T ss_pred eccCCHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999886543
No 45
>KOG1117|consensus
Probab=98.22 E-value=4.9e-06 Score=70.64 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=66.1
Q ss_pred cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecC-CCCc--ccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCS-SDDK--VFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~-~~~~--~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
.-++ .||||-++.|+||.++....|.|.|.+....+-.+. +++. ..-.|.|+|..++.|.|.|-+++.+++..|..
T Consensus 517 e~nr-~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~ 595 (1186)
T KOG1117|consen 517 ETNR-KWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTE 595 (1186)
T ss_pred cCCC-ceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHH
Confidence 3444 599999999999999999999999999875433222 2221 23467899999999999999999999999999
Q ss_pred HHHHhh
Q psy4640 96 ALSLAS 101 (109)
Q Consensus 96 aI~~a~ 101 (109)
+|.++-
T Consensus 596 aiaKhf 601 (1186)
T KOG1117|consen 596 AIAKHF 601 (1186)
T ss_pred HHHHhc
Confidence 998764
No 46
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.20 E-value=1.6e-06 Score=56.92 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=60.9
Q ss_pred ccccCCceEEeeCCeEE-----EEcCCCCCcccEEEEcCCeEEeecCCCC--------cccceeeEEEeeCCceEEEEEc
Q psy4640 18 KSVGSDLDSIGSRNGLA-----VTDRFEEEKLLGSILLPSYKISPCSSDD--------KVFRKFSFKAEHANMRTYYFAA 84 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~-----yyk~~~d~~p~G~I~L~~~~V~~~~~~~--------~~~k~~~F~i~~~~~r~y~fsA 84 (109)
|++-++ |++|.+-.=| -|+.+ ...|...|.|+|++|.-+++.. -...+|-|+.+..+ -+..|++
T Consensus 17 KkWKKR-wFvL~qvsQYtfamcsy~ek-ks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkeg-d~~~fa~ 93 (117)
T cd01234 17 KKWKKR-FFVLVQVSQYTFAMCSYREK-KAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEG-DELKFAT 93 (117)
T ss_pred hhhhee-EEEEEchhHHHHHHHhhhhh-cCCchhheeecceEEeccCCCCCCcccccccccchhhhheeccC-cEEEEec
Confidence 455554 7788765544 34444 5789999999999996654421 11345778887666 5899999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q psy4640 85 DTRESMIQWMNALSLASIL 103 (109)
Q Consensus 85 ~s~~e~~~Wi~aI~~a~~~ 103 (109)
+++.|+.-||.||-+|+-.
T Consensus 94 ~de~~r~lwvqa~yratgq 112 (117)
T cd01234 94 DDENERHLWVQAMYRATGQ 112 (117)
T ss_pred cchHHHHHHHHHHHHHcCc
Confidence 9999999999999998744
No 47
>KOG0521|consensus
Probab=98.17 E-value=1.8e-06 Score=73.07 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=61.3
Q ss_pred ceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
.|+-.+++.|-|+..-.+......++|..|.|..+.+. .-++|||+|..++ ++|.|+|+|+.+.+.||.+|+..+.
T Consensus 294 ~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~--~drr~CF~iiS~t-ks~~lQAes~~d~~~Wi~~i~nsi~ 369 (785)
T KOG0521|consen 294 RWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQ--RDRRFCFEIISPT-KSYLLQAESEKDCQDWISALQNSIL 369 (785)
T ss_pred hhhhhhccccccccccccccccccccchhccccCCccc--ccceeeEEEecCC-cceEEecCchhHHHHHHHHHHHHHH
Confidence 45555688888888776555577888889999877663 2468999999864 8999999999999999999998764
No 48
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.14 E-value=2.5e-05 Score=51.24 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=49.7
Q ss_pred eEEeeCC-eEEEEcCCCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 25 DSIGSRN-GLAVTDRFEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 25 ~~vL~~~-~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
+.+|++. .|+|+.... ....|.|+++.. +|+.... -.|.|.+|+ |+|+|.. .+.++..|+++|..+..
T Consensus 31 ~liLTd~PrL~Yvdp~~-~~~KGeI~~~~~l~v~~k~~-------~~F~I~tp~-RtY~l~d-~~~~A~~W~~~I~~~~~ 100 (104)
T PF14593_consen 31 QLILTDGPRLFYVDPKK-MVLKGEIPWSKELSVEVKSF-------KTFFIHTPK-RTYYLED-PEGNAQQWVEAIEEVKK 100 (104)
T ss_dssp EEEEETTTEEEEEETTT-TEEEEEE--STT-EEEECSS-------SEEEEEETT-EEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred EEEEccCCEEEEEECCC-CeECcEEecCCceEEEEccC-------CEEEEECCC-cEEEEEC-CCCCHHHHHHHHHHHHH
Confidence 4589987 888887664 577899999754 6665432 379998885 9999988 55568889999998765
Q ss_pred hc
Q psy4640 103 LQ 104 (109)
Q Consensus 103 ~~ 104 (109)
.+
T Consensus 101 ~~ 102 (104)
T PF14593_consen 101 QY 102 (104)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 49
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.14 E-value=2.5e-05 Score=50.93 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=47.0
Q ss_pred cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 43 ~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
+....++|++..|.-+++.+ .-+++|+|.+++ +++.++|+|.++..+||+.|..|.
T Consensus 43 ~~~~~~~L~~i~V~ni~D~~--~~kNafki~t~~-~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 43 VMESTYSLNSVAVVNVKDRE--NAKKVLKLLIFP-ESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEEEEEehHHeEEEecCCCc--CcCceEEEEeCC-ccEEEEeCCHHHHHHHHHHHHHHh
Confidence 45689999999887665532 347899998876 799999999999999999999985
No 50
>PF15406 PH_6: Pleckstrin homology domain
Probab=98.10 E-value=1.3e-05 Score=52.80 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=44.0
Q ss_pred CeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 31 NGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 31 ~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
+.|+|-|.+....|.|+|+|.+.+ |+. + ...+|.|++ .+ ....|.|.|..|++.||.+|..
T Consensus 50 GLLF~~K~~dka~P~GiinLadase~~~--~---g~~kF~f~~--~G-~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 50 GLLFFSKAEDKASPSGIINLADASEPEK--D---GSNKFHFKI--KG-HKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred eEEEEeccccccCCcceEehhhcccccc--C---CCceEEEEe--CC-ceeeeecCCHHHhccHHHHhhc
Confidence 456666644456899999997753 222 2 134677776 34 5789999999999999999863
No 51
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.00 E-value=4.6e-05 Score=50.30 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=59.9
Q ss_pred cccCCceEEeeCCeEEEEcCCCC-----CcccEEEEcC--CeEEeecCCCC--cccceeeEEEeeCCc-eEEEEEcCCHH
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEE-----EKLLGSILLP--SYKISPCSSDD--KVFRKFSFKAEHANM-RTYYFAADTRE 88 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d-----~~p~G~I~L~--~~~V~~~~~~~--~~~k~~~F~i~~~~~-r~y~fsA~s~~ 88 (109)
+.+++-+.+|++..|+.|+...- .+|.-..+|- -+++....+.. ..++++||.+.+... .+++|+.|+..
T Consensus 17 ~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~vesh~fsVEt~~ 96 (108)
T cd01258 17 QRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQVENHYLRVETHR 96 (108)
T ss_pred cccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCceeeEEEEecCHH
Confidence 45556678999999999997754 3566777775 34432222211 125679999988777 89999999999
Q ss_pred HHHHHHHHHHH
Q psy4640 89 SMIQWMNALSL 99 (109)
Q Consensus 89 e~~~Wi~aI~~ 99 (109)
|+..|.+||.+
T Consensus 97 dL~~W~raiv~ 107 (108)
T cd01258 97 DLASWERALVR 107 (108)
T ss_pred HHHHHHHHHhc
Confidence 99999999975
No 52
>KOG1090|consensus
Probab=97.97 E-value=3.6e-06 Score=72.53 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=62.7
Q ss_pred cccCCceEEee--CCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 19 SVGSDLDSIGS--RNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 19 ~~~~~~~~vL~--~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
+.|+.-|+||. .+.|+||.+..|++|.|.|.|...+ |....++. ...+--|.+.+.+ |+|-|.|.+..+.++|++
T Consensus 1648 K~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~-vdekgffdlktt~-rvynf~a~nin~AqqWve 1725 (1732)
T KOG1090|consen 1648 KLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKT-VDEKGFFDLKTTN-RVYNFCAQNINLAQQWVE 1725 (1732)
T ss_pred cccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccc-cCccceeeeehhh-HHHHHHhccchHHHHHHH
Confidence 55666688985 4889999999999999999997764 44433322 1223458887654 999999999999999999
Q ss_pred HHHHhh
Q psy4640 96 ALSLAS 101 (109)
Q Consensus 96 aI~~a~ 101 (109)
.|..+.
T Consensus 1726 ~iqscl 1731 (1732)
T KOG1090|consen 1726 CIQSCL 1731 (1732)
T ss_pred HHHHhh
Confidence 998754
No 53
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.92 E-value=0.00025 Score=46.92 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=54.8
Q ss_pred EEeeCCeEEEEcCCCC----CcccEEEEcCCeEEeecCCCCc----ccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHH
Q psy4640 26 SIGSRNGLAVTDRFEE----EKLLGSILLPSYKISPCSSDDK----VFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 26 ~vL~~~~L~yyk~~~d----~~p~G~I~L~~~~V~~~~~~~~----~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~a 96 (109)
.-|=|+.|.|=|...- =.-.|.|.|..++|...++... ..-++.|+|.+.. ...|.|+|.|.++.++||+|
T Consensus 23 ~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a 102 (109)
T cd01224 23 LFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSA 102 (109)
T ss_pred EEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHH
Confidence 4566777777773321 2356999999999987765321 1236899997643 57899999999999999999
Q ss_pred HHHh
Q psy4640 97 LSLA 100 (109)
Q Consensus 97 I~~a 100 (109)
|...
T Consensus 103 ~~~e 106 (109)
T cd01224 103 FALE 106 (109)
T ss_pred HHHh
Confidence 9763
No 54
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.83 E-value=0.00016 Score=47.85 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=57.3
Q ss_pred eEEeeCCeEEEEcC-CC--CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 25 DSIGSRNGLAVTDR-FE--EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 25 ~~vL~~~~L~yyk~-~~--d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
+.+|=.++|+.... +. .=.-.|-+||.+.+|...++.+ +.++.|+|..+---+..+.|.|.+|+++||..|+.-+
T Consensus 32 yLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e--~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~~ 109 (111)
T cd01225 32 YLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE--ALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNANN 109 (111)
T ss_pred EEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc--CccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhhc
Confidence 45777777777764 32 2346799999999988654432 5579999987766678999999999999999998743
No 55
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.80 E-value=0.00013 Score=46.50 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=48.6
Q ss_pred eEEeeC-CeEEEEcCCCCCcccEEEEcCC-e-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 25 DSIGSR-NGLAVTDRFEEEKLLGSILLPS-Y-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 25 ~~vL~~-~~L~yyk~~~d~~p~G~I~L~~-~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
.-+|++ ..|+|+. +.....+|.||+.. . +|+... ...|.|.+|+ |+|+|. |.+.....|+++|..+.
T Consensus 19 ~LiLTd~PrL~yvd-p~~~~~KgeIp~s~~~l~v~~~~-------~~~F~I~Tp~-rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 19 QLILTNGPRLIYVD-PVKKVVKGEIPWSDVELRVEVKN-------SSHFFVHTPN-KVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred eEEEecCceEEEEc-CCcCeEEeEecccccceEEEEec-------CccEEEECCC-ceEEEE-CCCCCHHHHHHHHHHHh
Confidence 457777 4555554 44678999999976 3 344332 3479998776 999995 55689999999998764
No 56
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=97.79 E-value=9.5e-05 Score=48.25 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCeEEEEcC--CCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 30 RNGLAVTDR--FEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 30 ~~~L~yyk~--~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
+..|.+|-- ++..+|+-.|+.... .|......+-..+.+.|.|.-.+.-.|.|.|.|.++|+.|+..|+.
T Consensus 34 g~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 34 GYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred CceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 455555554 777888877776433 2333333222345678888766667899999999999999999974
No 57
>KOG4424|consensus
Probab=97.78 E-value=2.9e-05 Score=63.55 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=65.9
Q ss_pred ccccCCceEEe---eCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640 18 KSVGSDLDSIG---SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM 94 (109)
Q Consensus 18 ~~~~~~~~~vL---~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi 94 (109)
.+.|...|++. ...++|.|..++|......|||.||.+...+........++|++.. .++.|+|+|+|++-+++|+
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~-s~~~~~~~a~~~q~qq~wl 588 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLVQ-SHLSWHLAADDEQLQQRWL 588 (623)
T ss_pred CccceeeeeeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhhhhh-hcceeeeccCCHHHHHHHH
Confidence 34555556644 4578999999999999999999999876443322223457788864 4579999999999999999
Q ss_pred HHHHHhhhhc
Q psy4640 95 NALSLASILQ 104 (109)
Q Consensus 95 ~aI~~a~~~~ 104 (109)
+.|..|....
T Consensus 589 ~~l~~A~~~d 598 (623)
T KOG4424|consen 589 EVLLLAVSGD 598 (623)
T ss_pred HHHHhhhccc
Confidence 9999988654
No 58
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.64 E-value=0.00017 Score=57.40 Aligned_cols=37 Identities=19% Similarity=0.092 Sum_probs=32.2
Q ss_pred cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
+++++|.|.+...+.++|.|+|++|+++||.+|+.|.
T Consensus 440 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 440 KHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred CCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHh
Confidence 5689999976566788999999999999999999875
No 59
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.61 E-value=0.00027 Score=47.23 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=45.5
Q ss_pred ccEEEEcCCeEEeecCCCCcc----cceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy4640 44 LLGSILLPSYKISPCSSDDKV----FRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSLASILQN 105 (109)
Q Consensus 44 p~G~I~L~~~~V~~~~~~~~~----~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~a~~~~~ 105 (109)
-.-.+.|..+.|+.....|.. +-.|+|.|.+.+ .-.|.|.|.|+++...||+||..|...-.
T Consensus 49 ~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sni~ 115 (116)
T cd01223 49 YKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSNIR 115 (116)
T ss_pred hHHhhhhheeeeEecCccCcccCCcceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 345677888887654322221 346889998654 36799999999999999999999876544
No 60
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.59 E-value=0.0015 Score=42.22 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=47.0
Q ss_pred eCCeEEEEcCCCCC-cccEEEEcCCeEEeecCCCCcccceeeEEEeeCC--ceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 29 SRNGLAVTDRFEEE-KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHAN--MRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 29 ~~~~L~yyk~~~d~-~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~--~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
=+..|.|=|...++ .-+..|.+.+..|....++ -+++|.|.+.+ .+.|.|+|.|.++.+.||++|+.++.
T Consensus 24 Fe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~~----d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 24 FQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLPG----EPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred ecccEEEEEecCCeeEEEEEEEecceEEecCCCC----CCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 34444443432221 3456778887776553332 26899996431 26999999999999999999998763
No 61
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.49 E-value=0.0015 Score=44.23 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=27.7
Q ss_pred ceeeEEEe-----eCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640 66 RKFSFKAE-----HANMRTYYFAADTRESMIQWMNALS 98 (109)
Q Consensus 66 k~~~F~i~-----~~~~r~y~fsA~s~~e~~~Wi~aI~ 98 (109)
.++.|.|. ....+.+.|+|+|+.|+.+||+||.
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 46889985 2346789999999999999999985
No 62
>PLN02866 phospholipase D
Probab=97.48 E-value=0.00097 Score=58.15 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=61.4
Q ss_pred cCCceEEeeCCeEEEEcCCCCCcccEEEEcC-Ce--------EEeecCC-CCcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLP-SY--------KISPCSS-DDKVFRKFSFKAEHANMRTYYFAADTRESM 90 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~-~~--------~V~~~~~-~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~ 90 (109)
+++-|.||++.+|.|.+++.+.++.-+|... .. .+..+.. .+.....|.|+|... .|+..|.|.|...+
T Consensus 218 w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~-~r~l~l~~~s~~~~ 296 (1068)
T PLN02866 218 WQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCG-NRSIRLRTKSSAKV 296 (1068)
T ss_pred hheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecC-ceEEEEEECCHHHH
Confidence 4446889999999999999998988888775 11 2333222 111233689999765 59999999999999
Q ss_pred HHHHHHHHHhhh
Q psy4640 91 IQWMNALSLASI 102 (109)
Q Consensus 91 ~~Wi~aI~~a~~ 102 (109)
.+|+++|+.+..
T Consensus 297 ~~w~~ai~~~~~ 308 (1068)
T PLN02866 297 KDWVAAINDAGL 308 (1068)
T ss_pred HHHHHHHHHHHh
Confidence 999999999873
No 63
>KOG3751|consensus
Probab=97.44 E-value=0.00031 Score=57.21 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=57.4
Q ss_pred CCcccccCCceEEeeCCeEEEEcCCCCCcccE---EEEcCCeEE--eecCCC-CcccceeeEEEe--e---CCceEEEEE
Q psy4640 15 SSRKSVGSDLDSIGSRNGLAVTDRFEEEKLLG---SILLPSYKI--SPCSSD-DKVFRKFSFKAE--H---ANMRTYYFA 83 (109)
Q Consensus 15 ~~~~~~~~~~~~vL~~~~L~yyk~~~d~~p~G---~I~L~~~~V--~~~~~~-~~~~k~~~F~i~--~---~~~r~y~fs 83 (109)
..+|+.|+++++||+...|||+-..+.+.|.- .-.|.+-.| ...... -+.-..|+|.|. . ...-.=+|+
T Consensus 327 ~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~lC 406 (622)
T KOG3751|consen 327 EDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKMLC 406 (622)
T ss_pred ccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeeccccCcccceeeee
Confidence 55688889999999999999998776666543 223333332 222221 011123555543 1 222234899
Q ss_pred cCCHHHHHHHHHHHHHhhhh
Q psy4640 84 ADTRESMIQWMNALSLASIL 103 (109)
Q Consensus 84 A~s~~e~~~Wi~aI~~a~~~ 103 (109)
||++..+..|+.||+.+-+.
T Consensus 407 AEDe~t~~~WltAiRl~KyG 426 (622)
T KOG3751|consen 407 AEDEQTRTCWLTAIRLLKYG 426 (622)
T ss_pred cccchhHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 64
>KOG0690|consensus
Probab=97.39 E-value=0.00058 Score=53.69 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=53.3
Q ss_pred cccCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC--CCcccceeeEEEeeCC---ceEEEEEcCCHHHHHHH
Q psy4640 19 SVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS--DDKVFRKFSFKAEHAN---MRTYYFAADTRESMIQW 93 (109)
Q Consensus 19 ~~~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~--~~~~~k~~~F~i~~~~---~r~y~fsA~s~~e~~~W 93 (109)
.|+-+.+.+..++.|.=|+++......-.-+|+++.|..+.. -+ ..+++.|-|..-+ --.-.|.++|.+++++|
T Consensus 30 nWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~e-rPrPntFiiRcLQWTTVIERTF~ves~~eRq~W 108 (516)
T KOG0690|consen 30 NWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTE-RPRPNTFIIRCLQWTTVIERTFYVESAEERQEW 108 (516)
T ss_pred cccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhcc-CCCCceEEEEeeeeeeeeeeeeecCCHHHHHHH
Confidence 333333345578899989876544333446777777654432 12 2467888885422 11236779999999999
Q ss_pred HHHHHHhhh
Q psy4640 94 MNALSLASI 102 (109)
Q Consensus 94 i~aI~~a~~ 102 (109)
+.||+.++.
T Consensus 109 ~~AIq~vsn 117 (516)
T KOG0690|consen 109 IEAIQAVSN 117 (516)
T ss_pred HHHHHHHhh
Confidence 999998763
No 65
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.33 E-value=0.00098 Score=56.09 Aligned_cols=79 Identities=8% Similarity=0.062 Sum_probs=58.4
Q ss_pred eEEeeCCeEEEEcCC--CCCcccEEEEcC-CeEEeecCCCC-cccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHH
Q psy4640 25 DSIGSRNGLAVTDRF--EEEKLLGSILLP-SYKISPCSSDD-KVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALS 98 (109)
Q Consensus 25 ~~vL~~~~L~yyk~~--~d~~p~G~I~L~-~~~V~~~~~~~-~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~ 98 (109)
++||.++.|-|||.+ ....|+.+..|. +|.|+...-+. ..+--|+|.|.. ...+...|.|-|.+|..+||+||.
T Consensus 27 y~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~ 106 (719)
T PLN00188 27 YFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIE 106 (719)
T ss_pred EEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHH
Confidence 479999999999963 335677888885 45777544321 112247888853 334678999999999999999999
Q ss_pred Hhhhh
Q psy4640 99 LASIL 103 (109)
Q Consensus 99 ~a~~~ 103 (109)
.|+..
T Consensus 107 ~a~~q 111 (719)
T PLN00188 107 SVIDQ 111 (719)
T ss_pred HHHhh
Confidence 99874
No 66
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.25 E-value=0.0051 Score=41.11 Aligned_cols=81 Identities=17% Similarity=0.092 Sum_probs=50.0
Q ss_pred cccCCceEEeeC--CeEEEEcCCC-CCc----ccEEEEcCCeE-EeecCCCCccc----ceeeEEEeeCCceEEEEEcCC
Q psy4640 19 SVGSDLDSIGSR--NGLAVTDRFE-EEK----LLGSILLPSYK-ISPCSSDDKVF----RKFSFKAEHANMRTYYFAADT 86 (109)
Q Consensus 19 ~~~~~~~~vL~~--~~L~yyk~~~-d~~----p~G~I~L~~~~-V~~~~~~~~~~----k~~~F~i~~~~~r~y~fsA~s 86 (109)
+.+.+ ++.|.. .+|+|...+. .+. -.+.|.|.+.. |..-.+..... -.++|.|.+++ |+.-|.|+|
T Consensus 29 ~~h~R-~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~-R~L~l~a~s 106 (123)
T PF12814_consen 29 KPHRR-YFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPD-RSLDLTAPS 106 (123)
T ss_pred CcEEE-EEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEEEcCC-eEEEEEeCC
Confidence 34443 455655 6677777432 122 23568887664 32211111111 24677777665 999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy4640 87 RESMIQWMNALSLAS 101 (109)
Q Consensus 87 ~~e~~~Wi~aI~~a~ 101 (109)
.++.+-|+++|+.-+
T Consensus 107 ~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 107 RERHEIWFNALRYLL 121 (123)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998644
No 67
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.22 E-value=0.00041 Score=44.78 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=34.9
Q ss_pred cEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 45 LGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 45 ~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
.=.|||++..+... .|++.....++|.|.|.|..|..+||++|..-
T Consensus 48 ~w~IPL~dl~~~~~----------~~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 48 KWYIPLADLSFPSE----------PFRIHNKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred eEEEEhHHheecch----------hhhccccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 34788887665533 15554444689999999999999999999763
No 68
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.94 E-value=0.0059 Score=40.56 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=37.9
Q ss_pred EEEEcCCeEEeecCCCCcccceeeEEEe--eCC--ceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 46 GSILLPSYKISPCSSDDKVFRKFSFKAE--HAN--MRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~--~~~--~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
..|+|++..++...+.| +..|.|. .+. ..+|.++|.|.++.+.|+..|+...
T Consensus 57 ~~ikls~l~l~e~v~gd----~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il 112 (114)
T cd01232 57 SKLQVSKMGLTEHVEGD----PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL 112 (114)
T ss_pred cceeeeeeEeEEccCCC----CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 67888877766543322 3456664 332 3699999999999999999999864
No 69
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.84 E-value=0.0019 Score=51.90 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=34.6
Q ss_pred cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
+.+|+|.+...++|.+.|.|.+++|++.||.+|+.+.-
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 46899999887789999999999999999999999864
No 70
>KOG1117|consensus
Probab=96.46 E-value=0.008 Score=51.81 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=58.9
Q ss_pred EEeeCCeEEEEcCCCCCcccEEEEcCCeEEee-cCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640 26 SIGSRNGLAVTDRFEEEKLLGSILLPSYKISP-CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASIL 103 (109)
Q Consensus 26 ~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~-~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~ 103 (109)
.||.+.||+.||+.+..+.....+|.+.++=. +...-+....+.|.+...++ .+|++|++..++-+|+..|=.|-..
T Consensus 1056 filng~~l~lyke~KssKhek~wpl~s~k~Y~GvkkklKpPt~wg~T~i~ekh-h~~l~cd~s~~~~ewfts~fkaqhd 1133 (1186)
T KOG1117|consen 1056 FILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVKKKLKPPTSWGFTAISEKH-HWYLCCDSSSEQTEWFTSIFKAQHD 1133 (1186)
T ss_pred EEecCcEEEEeehhhccccccccccccceEEeccccccCCCCccceeeeeecc-eEEEecCCccccchhhhhhhhhhcc
Confidence 69999999999999888888899998876533 22211122346788887764 7999999999999999988776543
No 71
>KOG3727|consensus
Probab=96.37 E-value=0.0013 Score=54.12 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=55.0
Q ss_pred EeeCCeEEEEcCCCCCcccEEEEcCCeEEeec-CCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 27 IGSRNGLAVTDRFEEEKLLGSILLPSYKISPC-SSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 27 vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~-~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
+..+..+.||++. ..|.+.|.|.||+|+++ +........++.+..-++.-.+|+.|++++.--+||+|-+.|+...
T Consensus 385 l~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLASKGk 461 (664)
T KOG3727|consen 385 LHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLASKGK 461 (664)
T ss_pred HHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHhhcCC
Confidence 4444555566655 68899999999998654 3322223344555555677889999999999999999999998754
No 72
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=96.18 E-value=0.011 Score=40.28 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=26.5
Q ss_pred cceeeEEEeeCCc--eEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 65 FRKFSFKAEHANM--RTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 65 ~k~~~F~i~~~~~--r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
+..|.|++.+-+. ..|.|.|+|..++++|+++|..+
T Consensus 97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 4568888877543 46799999999999999999874
No 73
>KOG0248|consensus
Probab=96.13 E-value=0.0047 Score=52.06 Aligned_cols=75 Identities=12% Similarity=0.196 Sum_probs=59.3
Q ss_pred ceEEeeCCeEEEEcCCC--CCcccEEEEcC-CeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 24 LDSIGSRNGLAVTDRFE--EEKLLGSILLP-SYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 24 ~~~vL~~~~L~yyk~~~--d~~p~G~I~L~-~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
-|.|++.....||+.+. +.+|.+.|.++ +|.+.... -.+.|.++... .+|+|.++++--..+|++.|..+
T Consensus 268 r~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~~------~s~~fqli~~t-~~~~~~~~s~~lt~dw~~iL~~~ 340 (936)
T KOG0248|consen 268 RYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQG------AAYAFQLITST-DKMNFMTESERTTHDWVTILSAA 340 (936)
T ss_pred HheeeccceEEEEEcCCCccccccCcccccccceeeccc------hhHHhhhhhhc-eeEEEeccChhhhhhhHHHHHHH
Confidence 36899999999999664 57899999996 45544332 25789887554 78999999999999999999998
Q ss_pred hhhcc
Q psy4640 101 SILQN 105 (109)
Q Consensus 101 ~~~~~ 105 (109)
+..+.
T Consensus 341 iKv~~ 345 (936)
T KOG0248|consen 341 IKATT 345 (936)
T ss_pred HHHHh
Confidence 87763
No 74
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=96.03 E-value=0.12 Score=35.98 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=64.9
Q ss_pred cccCCCCCcccccCCce---EEeeCCeEEEEcCCCC--CcccE-----------------EEEcCCeEEeecCCCCcccc
Q psy4640 9 LSSSSPSSRKSVGSDLD---SIGSRNGLAVTDRFEE--EKLLG-----------------SILLPSYKISPCSSDDKVFR 66 (109)
Q Consensus 9 ~~~~~~~~~~~~~~~~~---~vL~~~~L~yyk~~~d--~~p~G-----------------~I~L~~~~V~~~~~~~~~~k 66 (109)
.|-+.+-+.++.-+... +|++.-.++.||+... ++.-| .||+....|......+ ...
T Consensus 34 ~WLNp~~slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad-~e~ 112 (160)
T cd01255 34 EWLNPSDSLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAAD-MES 112 (160)
T ss_pred eeecCChhhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcC-ccc
Confidence 34455544444445555 4899999999996542 33323 6777777776544433 345
Q ss_pred eeeEEEeeC-------CceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640 67 KFSFKAEHA-------NMRTYYFAADTRESMIQWMNALSLASIL 103 (109)
Q Consensus 67 ~~~F~i~~~-------~~r~y~fsA~s~~e~~~Wi~aI~~a~~~ 103 (109)
.+.++|+|. ..++|.|++.+.|-.+..|+.|+.....
T Consensus 113 ~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 113 NFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred ceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 688999762 2479999999999999999999986643
No 75
>KOG1738|consensus
Probab=95.96 E-value=0.00092 Score=55.34 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=35.6
Q ss_pred CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCC
Q psy4640 22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSS 60 (109)
Q Consensus 22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~ 60 (109)
++.|+||+++.||.|.+++++.+.++|.|..++|..+.+
T Consensus 582 ~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e 620 (638)
T KOG1738|consen 582 RKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEE 620 (638)
T ss_pred hhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHH
Confidence 346899999999999999999999999999999988766
No 76
>KOG3549|consensus
Probab=95.74 E-value=0.0037 Score=49.16 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=55.9
Q ss_pred EeeCCeEEEEcCCCCC-----cccEEEEcC--CeEEee-cCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640 27 IGSRNGLAVTDRFEEE-----KLLGSILLP--SYKISP-CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98 (109)
Q Consensus 27 vL~~~~L~yyk~~~d~-----~p~G~I~L~--~~~V~~-~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~ 98 (109)
.|++.++|.|..+.-. ++.-...+= -|+|.. .+-.| .+++||.|....+...||+.+...|+.+|=++.+
T Consensus 306 aLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D--~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq 383 (505)
T KOG3549|consen 306 ALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVD--SRQHCFLLQSSGGEPRYFSVELRSELARWENSFQ 383 (505)
T ss_pred EecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccc--cccceEEEEcCCCCceEEEEehhhHHHHHHHHHh
Confidence 7899999999976422 222222221 123221 11122 6789999998888999999999999999999999
Q ss_pred HhhhhccCCC
Q psy4640 99 LASILQNSST 108 (109)
Q Consensus 99 ~a~~~~~~~~ 108 (109)
.|+.-...++
T Consensus 384 ~Atf~eV~r~ 393 (505)
T KOG3549|consen 384 AATFTEVIRL 393 (505)
T ss_pred hHHhHHHhhh
Confidence 9986654443
No 77
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=95.73 E-value=0.044 Score=36.37 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=55.7
Q ss_pred ccccCCce-------EEeeCCeEEEEcCCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHH
Q psy4640 18 KSVGSDLD-------SIGSRNGLAVTDRFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES 89 (109)
Q Consensus 18 ~~~~~~~~-------~vL~~~~L~yyk~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e 89 (109)
+++|.+|. .-|=.|.|.+|....+++ ...|.++..+ |+. +....+...|+.|.-.+.+.+++.++++-+
T Consensus 10 ~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~-~eLi~M~~i~~V~~--e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~ 86 (116)
T cd01240 10 KKLGGPFLSQWQTRYFKLYPNRLELYGESEANK-PELITMDQIEDVSV--EFQQIKEENCILLKIRDEKKIVLTNSDEIE 86 (116)
T ss_pred hhhCCHHHHHHHHHHheeCcceeeecccccccC-CcEEEeehhhhcch--hheeeccCceEEEEEcCCceEEEecCCcHH
Confidence 45666554 478899999986655433 3455555432 221 111124467888876667889999999999
Q ss_pred HHHHHHHHHHhhh
Q psy4640 90 MIQWMNALSLASI 102 (109)
Q Consensus 90 ~~~Wi~aI~~a~~ 102 (109)
..+|...|+.|-.
T Consensus 87 l~qW~~elr~a~r 99 (116)
T cd01240 87 LKQWKKELRDAHR 99 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 78
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.64 E-value=0.12 Score=33.82 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=27.9
Q ss_pred eeeEEEeeCC---ceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 67 KFSFKAEHAN---MRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 67 ~~~F~i~~~~---~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
..+|.|.... -++..|.|+|.++++.|++.|+.
T Consensus 79 ~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 79 ERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 4689997643 47899999999999999999974
No 79
>KOG1739|consensus
Probab=95.60 E-value=0.018 Score=46.98 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=56.6
Q ss_pred cCCceEEeeCCeEEEEcCCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHH
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~ 98 (109)
+.+=+.+|+.+.|.||+++.++ .-.|.|.|....|..-+. | ...|.|.... -.+|+.|.+.+..+.|+++|.
T Consensus 40 wqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEf-D----e~rfdIsvn~-nv~~lra~~~~hr~~w~d~L~ 113 (611)
T KOG1739|consen 40 WQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEF-D----ECRFDISVND-NVWYLRAQDPDHRQQWIDALE 113 (611)
T ss_pred ccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccc-h----hheeeeEecc-ceeeehhcCcHHHHHHHHHHH
Confidence 3344789999999999987543 467999998766543322 2 3457776554 589999999999999999998
Q ss_pred Hhhh
Q psy4640 99 LASI 102 (109)
Q Consensus 99 ~a~~ 102 (109)
....
T Consensus 114 wmk~ 117 (611)
T KOG1739|consen 114 WMKT 117 (611)
T ss_pred HHhh
Confidence 8654
No 80
>KOG1264|consensus
Probab=95.51 E-value=0.027 Score=48.61 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=41.8
Q ss_pred EEEEcCCeEEeecCCCCcccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640 46 GSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASIL 103 (109)
Q Consensus 46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~ 103 (109)
|+..++-|.|...+.+ +-.+.++|.|.. -+.-.|.|+|++.||+.+|+++|+.++..
T Consensus 854 gi~d~~~~nvv~~~q~-~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~ 912 (1267)
T KOG1264|consen 854 GILDLNTYNVVKAPQG-KNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK 912 (1267)
T ss_pred ccccccccceeecccc-cCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence 4556666776555442 224578999852 34568999999999999999999998754
No 81
>KOG4236|consensus
Probab=95.11 E-value=0.044 Score=45.80 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=59.4
Q ss_pred eEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCC---CcccceeeEEEeeCCceEEEEEcCC------------HH
Q psy4640 25 DSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSD---DKVFRKFSFKAEHANMRTYYFAADT------------RE 88 (109)
Q Consensus 25 ~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~---~~~~k~~~F~i~~~~~r~y~fsA~s------------~~ 88 (109)
+=.|...|+-.|.++...+.-..|||... .|+..... -....+|||+|.+.. +.||..++ .+
T Consensus 433 YWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~--~vyfVge~p~~~~~~~~g~g~d 510 (888)
T KOG4236|consen 433 YWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT--TVYFVGENPSSTPGGESGVGLD 510 (888)
T ss_pred hheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee--EEEEecCCCCCCccccccccch
Confidence 33577889999999988889999999765 45544321 112458999998765 55666666 56
Q ss_pred HHHHHHHHHHHhhhhccCC
Q psy4640 89 SMIQWMNALSLASILQNSS 107 (109)
Q Consensus 89 e~~~Wi~aI~~a~~~~~~~ 107 (109)
-.+.|-.||+.|.++-.|.
T Consensus 511 ~a~~w~~ai~~alMpV~pq 529 (888)
T KOG4236|consen 511 AAQGWETAIQQALMPVTPQ 529 (888)
T ss_pred hhccCchhhhhcccccccC
Confidence 6999999999998776543
No 82
>KOG3543|consensus
Probab=94.96 E-value=0.0072 Score=50.86 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=49.4
Q ss_pred EEcCCCCCcccEEEEcCCeEEeecCCCCc-ccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 35 VTDRFEEEKLLGSILLPSYKISPCSSDDK-VFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 35 yyk~~~d~~p~G~I~L~~~~V~~~~~~~~-~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
-|..+ ..+|...|.|+||+|.-.++... .+.++-|.....+ -+..|+.++++|+.-|++|+-+|+-
T Consensus 500 syrek-kaepqel~qldgytvdytdp~pglqgg~~ffnavkeg-dtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 500 SYREK-KAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEG-DTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred hhhhc-ccChHHHhhccCeeeccCCCCCccccchHHHHHhccC-ceEEeccCchhhhhHHHHHHHHhhC
Confidence 34433 46899999999999976554321 2334557766555 6899999999999999999999873
No 83
>KOG1451|consensus
Probab=94.84 E-value=0.04 Score=45.99 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=41.9
Q ss_pred cccEEEEcCCeEEeecCCCCcccceeeEEEee-CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 43 ~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~-~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
.+...+.|..|.=..- |...|+|||.+.. ...-+..++|-|++++..||+|+..+--.+
T Consensus 311 g~~~~~~lKsC~RRkt---dSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y 370 (812)
T KOG1451|consen 311 GQTATFKLKSCSRRKT---DSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSY 370 (812)
T ss_pred CCcceEEehhhccCcc---cccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCCccc
Confidence 4555667766653322 3356789999964 223489999999999999999998874333
No 84
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.74 E-value=0.16 Score=34.59 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=37.1
Q ss_pred EEEEcCCeEEeecCCCCcccceeeEEEee-CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 46 GSILLPSYKISPCSSDDKVFRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 46 G~I~L~~~~V~~~~~~~~~~k~~~F~i~~-~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
..|.|....++..... .+..|.|.. .....|.++|.|.+..+.|++.|+.....|
T Consensus 63 ~~ikls~lglte~v~g----d~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q 118 (133)
T cd01227 63 QSLKMTAVGITENVKG----DTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQ 118 (133)
T ss_pred eeEEeecccccccCCC----CccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 4566655544332221 244577643 234689999999999999999999877654
No 85
>PF15408 PH_7: Pleckstrin homology domain
Probab=94.09 E-value=0.066 Score=34.25 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=48.2
Q ss_pred eEEeeCCeEEEEcCCCCCcccEEEEcCCeEEee-------cCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHH
Q psy4640 25 DSIGSRNGLAVTDRFEEEKLLGSILLPSYKISP-------CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97 (109)
Q Consensus 25 ~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~-------~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI 97 (109)
+.+|++..|..|.++.. .-+.++.|...-+.. +.+.. .-.-|.|-...++.|..-+-|+|.+-|+.||+++
T Consensus 16 F~~L~~K~~~~~~~KGG-~~L~sF~L~~s~~s~Pm~~~~~A~~N~-Gi~A~G~L~~~~~~~~~~~FA~S~~~~~~Wi~~m 93 (104)
T PF15408_consen 16 FVMLRSKQFNMYEDKGG-QYLCSFQLSSSVVSHPMVNFSQAVPNL-GINAFGFLMYSPSRRHVQCFASSKKVCQSWIQVM 93 (104)
T ss_pred HHhhhhceeEEecccCC-ceeeeeehhhhhhhcccccccccCCCC-CeeEEEEEEecCCcchhhhhhhHHHHHHHHHHHh
Confidence 46788888888887643 334444554322211 11100 0123566667788888889999999999999999
Q ss_pred HHhh
Q psy4640 98 SLAS 101 (109)
Q Consensus 98 ~~a~ 101 (109)
+.-+
T Consensus 94 N~~s 97 (104)
T PF15408_consen 94 NSPS 97 (104)
T ss_pred cChh
Confidence 8644
No 86
>KOG4407|consensus
Probab=93.96 E-value=0.0045 Score=55.28 Aligned_cols=90 Identities=20% Similarity=0.172 Sum_probs=66.2
Q ss_pred cccCCCCCcccccCCceE------EeeCCeEEEEcCCCC--------------CcccEEEEcCCeEEeecCCCCccccee
Q psy4640 9 LSSSSPSSRKSVGSDLDS------IGSRNGLAVTDRFEE--------------EKLLGSILLPSYKISPCSSDDKVFRKF 68 (109)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~------vL~~~~L~yyk~~~d--------------~~p~G~I~L~~~~V~~~~~~~~~~k~~ 68 (109)
+..++.+++|.+|+++.. +|.++.|+.+++..+ ....-.+.|.+|.+.+.-.+ .++..
T Consensus 931 ~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~yse--tkrn~ 1008 (1973)
T KOG4407|consen 931 VLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQYSE--TKRNQ 1008 (1973)
T ss_pred eeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhhhh--hhhhh
Confidence 334556777888888774 789999999998765 12234577777766543221 35678
Q ss_pred eEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 69 SFKAEHANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 69 ~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
+|++...+...+.|+|++.++|..|++.+...
T Consensus 1009 vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~S 1040 (1973)
T KOG4407|consen 1009 VFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSS 1040 (1973)
T ss_pred HHHhHHHHHHhHhhccCccccccchhhhhhhc
Confidence 89997766678999999999999999988553
No 87
>KOG4424|consensus
Probab=93.81 E-value=0.14 Score=42.51 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=32.5
Q ss_pred cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
..++.|.+..+ .|..-|.|.|+++..+|+++|+.|+-
T Consensus 334 ~~~~tF~~~G~-~r~vel~a~t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 334 ELPHTFILTGK-KRGVELQARTEQEKKEWVQAIQDAID 370 (623)
T ss_pred cCCceEEEecc-cceEEeecCchhhHHHHHHHHHHHHH
Confidence 45789999765 49999999999999999999999874
No 88
>KOG0705|consensus
Probab=92.90 E-value=0.08 Score=44.16 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=30.7
Q ss_pred eeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 68 FSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 68 ~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
++|.|+.....++.|.|.+.+|++.||+||..-+.
T Consensus 446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 59999877778999999999999999999986543
No 89
>KOG4807|consensus
Probab=92.16 E-value=0.00089 Score=53.23 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=64.0
Q ss_pred ccccCCceEEeeCCeEEEEcCCCC---CcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHH
Q psy4640 18 KSVGSDLDSIGSRNGLAVTDRFEE---EKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 93 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~yyk~~~d---~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~W 93 (109)
-+++...|.|+++..|-||.++.. ....|.|.|.+|+ |..+.. .+.|.|.|.+.+ ..|.++|-+.--+..|
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a~----q~nY~~~i~~~~-~~~tL~~~~s~Ir~~~ 106 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAV----QRNYGFQIHTKD-AVYTLSAMTSGIRRNW 106 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHHH----Hhccceeecccc-hhhhhHHHHHHHHHHH
Confidence 466777889999999999998754 3567999999996 433322 457899997655 7899999999999999
Q ss_pred HHHHHHhhhh
Q psy4640 94 MNALSLASIL 103 (109)
Q Consensus 94 i~aI~~a~~~ 103 (109)
+.|+++...+
T Consensus 107 ~~A~~kT~~P 116 (593)
T KOG4807|consen 107 IEALRKTVRP 116 (593)
T ss_pred HHHHHhccCC
Confidence 9999975443
No 90
>KOG0517|consensus
Probab=91.66 E-value=0.0052 Score=56.27 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=55.2
Q ss_pred eEEeeCCeEEEEcCCCCCc------ccEEEEc--CCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHH
Q psy4640 25 DSIGSRNGLAVTDRFEEEK------LLGSILL--PSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 25 ~~vL~~~~L~yyk~~~d~~------p~G~I~L--~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~a 96 (109)
+++++.+.|-+|+|..... ..|-.+| ..+.|.... |..+|+++|.+..+....|.|.|.++++|+.|+.+
T Consensus 2327 y~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~--dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~ 2404 (2473)
T KOG0517|consen 2327 YCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVAS--DYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRA 2404 (2473)
T ss_pred HHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHH--HHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHH
Confidence 4789999999999875221 1233333 344444332 33577899999888889999999999999999999
Q ss_pred HHHhhh
Q psy4640 97 LSLASI 102 (109)
Q Consensus 97 I~~a~~ 102 (109)
+..+..
T Consensus 2405 ~a~~~~ 2410 (2473)
T KOG0517|consen 2405 LAVKRA 2410 (2473)
T ss_pred HHHHHH
Confidence 887663
No 91
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=91.06 E-value=0.87 Score=30.15 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.2
Q ss_pred cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASIL 103 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~ 103 (109)
...+.|-|.+. .+..-|-|+|..+.+.|++.|......
T Consensus 68 ~~~~yfgL~T~-~G~vEfec~~~~~~k~W~~gI~~mL~~ 105 (110)
T PF08458_consen 68 EERRYFGLKTA-QGVVEFECDSQREYKRWVQGIQHMLSQ 105 (110)
T ss_pred ceEEEEEEEec-CcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence 35678999877 589999999999999999999886543
No 92
>KOG3523|consensus
Probab=90.71 E-value=0.3 Score=40.96 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=27.4
Q ss_pred cceeeEEEe----e-CCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 65 FRKFSFKAE----H-ANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 65 ~k~~~F~i~----~-~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
..+|.|.+. + ...-.+.|+|+|+.|+++||.||.-
T Consensus 553 ~~~hlF~ltLl~N~~~~~~e~lL~a~s~Sd~~RWi~Al~p 592 (695)
T KOG3523|consen 553 SRPHLFLLTLLSNHQGRQTELLLSAESQSDRQRWISALRP 592 (695)
T ss_pred cccceEEEehhhccCCCceeeeecCCchHHHHHHHHhcCC
Confidence 345788874 1 2345799999999999999999983
No 93
>PF15411 PH_10: Pleckstrin homology domain
Probab=90.07 E-value=1.2 Score=29.54 Aligned_cols=50 Identities=22% Similarity=0.420 Sum_probs=34.7
Q ss_pred ccEEEEcCCeE-EeecCCCCcccceeeEEEee---CCceEEEEEcCCHHHHHHHHHHH
Q psy4640 44 LLGSILLPSYK-ISPCSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNAL 97 (109)
Q Consensus 44 p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~---~~~r~y~fsA~s~~e~~~Wi~aI 97 (109)
.+|.|.+...+ |..... ...|...|.- ++.-.|.|...|++.|+.|-.+|
T Consensus 63 LKGrI~i~~i~~v~~~s~----~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 63 LKGRIYISNITEVSSSSK----PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred EeeEEEEEeeeeeeccCC----CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence 35778776543 333222 2357777753 45678999999999999998875
No 94
>KOG2070|consensus
Probab=89.89 E-value=0.72 Score=38.09 Aligned_cols=71 Identities=8% Similarity=0.158 Sum_probs=48.2
Q ss_pred EeeCCeEEEEc-CCCCC--cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 27 IGSRNGLAVTD-RFEEE--KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 27 vL~~~~L~yyk-~~~d~--~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
+|=.+.|.++. ++... --.|-+++.|..|...++.+ .....|.|..+.-.-....|+++.++++|+++++.
T Consensus 331 ~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte--~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~ 404 (661)
T KOG2070|consen 331 LLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTE--NHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNK 404 (661)
T ss_pred eeccceeeeeEeccccchhhhccccccceeEEeehhhhh--cccccccccccchhheeeccCChHHHHHHHHHhhh
Confidence 44444444444 33322 24588999999887765533 34567998654434467889999999999999996
No 95
>KOG3520|consensus
Probab=86.46 E-value=0.86 Score=40.77 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=40.4
Q ss_pred ccEEEEcCCeEEeecCCCCcccceeeEEEee--CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 44 LLGSILLPSYKISPCSSDDKVFRKFSFKAEH--ANMRTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 44 p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~--~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
-..+|+|...-|..+..+ + +--|-|.. .+...|-+.|.|.+|++-||+.|..++...
T Consensus 666 ~spVisL~~livRevAtd---~-ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~ 724 (1167)
T KOG3520|consen 666 KSPVISLQKLIVREVATD---E-KAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASC 724 (1167)
T ss_pred CCCceehHHHHHHHHhcc---c-cceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhC
Confidence 456888876644444332 2 22355543 357899999999999999999999988654
No 96
>KOG3723|consensus
Probab=85.63 E-value=0.35 Score=40.61 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=51.4
Q ss_pred eEEeeCCeEEEEcCCC-CCcccEEEEcCCeE-EeecCCCC-cccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 25 DSIGSRNGLAVTDRFE-EEKLLGSILLPSYK-ISPCSSDD-KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 25 ~~vL~~~~L~yyk~~~-d~~p~G~I~L~~~~-V~~~~~~~-~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
++.|.+-.|.|-|... +..-...|+|...+ |..+.... ...-+-.|+|-+.+ .+|.+.|.+++..++|+..|+-|.
T Consensus 758 YFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD-~T~ILKaKDeKNAEEWlqCL~Iav 836 (851)
T KOG3723|consen 758 YFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEEWLQCLNIAV 836 (851)
T ss_pred eEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecC-ceEEeecccccCHHHHHHHHHHHH
Confidence 4789999999877442 22223678887653 33232110 00113469998776 689999999999999999998765
No 97
>PF15404 PH_4: Pleckstrin homology domain
Probab=83.35 E-value=1.5 Score=31.53 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred ceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 77 MRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 77 ~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
+|++-|-|.|..|++.||-+|...
T Consensus 161 gks~VF~ARSRqERD~WV~~I~~E 184 (185)
T PF15404_consen 161 GKSMVFMARSRQERDLWVLAINTE 184 (185)
T ss_pred CcEEEEEeccHHHHHHHHHHHHhc
Confidence 368899999999999999999753
No 98
>PF12480 DUF3699: Protein of unknown function (DUF3699) ; InterPro: IPR022168 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=80.93 E-value=7.9 Score=23.85 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=32.2
Q ss_pred cccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCC-----HHHHHHHHHHHH
Q psy4640 43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADT-----RESMIQWMNALS 98 (109)
Q Consensus 43 ~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s-----~~e~~~Wi~aI~ 98 (109)
+....++|...++.....+ +-.+++.....|.||+.-.+ +.....|+..|.
T Consensus 7 eLtr~lplk~v~l~v~~~~-----~~~l~lk~~t~r~~yl~L~~~~~~~~~~F~~w~~lv~ 62 (77)
T PF12480_consen 7 ELTRLLPLKFVKLSVHDLE-----KQQLKLKLVTGRPFYLQLCAPADKPETLFGEWIRLVS 62 (77)
T ss_pred EEeccCCccccEEEEEcCc-----ccEEEEEEccCCEEEEEEeCcccCcchhHHHHHHHHH
Confidence 3445566655444443331 23455544456999999555 778899999988
No 99
>KOG3531|consensus
Probab=80.60 E-value=1.6 Score=38.13 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=53.6
Q ss_pred ccccCCceEEeeCCeEEEEcCCC---CCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHH
Q psy4640 18 KSVGSDLDSIGSRNGLAVTDRFE---EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM 94 (109)
Q Consensus 18 ~~~~~~~~~vL~~~~L~yyk~~~---d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi 94 (109)
|.+-.+-++...+-.||--|+.. .-...|.|||. -+++-++.+ -.-+|||.|.. ..+..|.+|.+..+++.|+
T Consensus 762 kgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~-l~~en~en~--~s~p~~~ti~~-~qk~i~vsast~~~sk~~~ 837 (1036)
T KOG3531|consen 762 KGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT-LTMENSENE--WSVPHCFTISG-AQKQIYVSASTRRESKKWE 837 (1036)
T ss_pred ccchhhhhhhhhhhheeccCCCChhheeEeccCCceE-eeeeccccc--ccCCceEEEec-cceEEEEeccchhhhhhhh
Confidence 33434333444554455444422 23466888887 666655442 35589999875 4589999999999999999
Q ss_pred HHHHHhh
Q psy4640 95 NALSLAS 101 (109)
Q Consensus 95 ~aI~~a~ 101 (109)
..++.|+
T Consensus 838 ~~r~~~i 844 (1036)
T KOG3531|consen 838 FDRRKAI 844 (1036)
T ss_pred hccchhh
Confidence 9887776
No 100
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=79.62 E-value=12 Score=23.61 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=35.9
Q ss_pred cEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 45 LGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 45 ~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
.-..+|.+.+ |+...+. .....|.|... ++|+..|+|.+|...+|..|-+...
T Consensus 36 ~ktW~L~eL~~I~~~~~~---~~~~~F~l~~~--k~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 36 GKTWDLDELKAIDGINPD---KDTPEFDLTFD--KPYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp EEEEEGGG--EEEE-SSS-----TTEEEEESS--SEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eeEEehhhceeeeeecCC---CCCcCEEEEEC--CCcEEEeCCHHHHHHHHHHHHHHhc
Confidence 3477887765 4444331 22357888653 5999999999999999999987543
No 101
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=78.40 E-value=12 Score=23.64 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=39.8
Q ss_pred EEeeCCeEEEEcC---------------CCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHH
Q psy4640 26 SIGSRNGLAVTDR---------------FEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM 90 (109)
Q Consensus 26 ~vL~~~~L~yyk~---------------~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~ 90 (109)
..+..+.||+..+ ..+......++|.+.+-..... ..-++-+.+|-..++++|+|.-++.+++
T Consensus 21 l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR--yllr~~AlEiF~~dg~s~f~~F~~~~~R 98 (106)
T PF14844_consen 21 LIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR--YLLRDTALEIFFSDGRSYFFNFESKKER 98 (106)
T ss_dssp EEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE--ETTEEEEEEEEETTS-EEEEE-SSHHHH
T ss_pred EEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH--hcCcceEEEEEEcCCcEEEEEcCCHHHH
Confidence 3567777776655 3334556777887754211100 1123446777677889999999999999
Q ss_pred HHHHHHH
Q psy4640 91 IQWMNAL 97 (109)
Q Consensus 91 ~~Wi~aI 97 (109)
++=+++|
T Consensus 99 ~~v~~~l 105 (106)
T PF14844_consen 99 DEVYNKL 105 (106)
T ss_dssp HHHHCCS
T ss_pred HHHHHhh
Confidence 8765543
No 102
>KOG4471|consensus
Probab=77.25 E-value=6.8 Score=33.18 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=53.0
Q ss_pred EeeCCeEEEEcCCCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHH-HHHHHHHHhhhh
Q psy4640 27 IGSRNGLAVTDRFEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI-QWMNALSLASIL 103 (109)
Q Consensus 27 vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~-~Wi~aI~~a~~~ 103 (109)
.|+...||+-..+.+..+.+.|||.=. +|+..........-|.+.|..++.|+.-++-..++..+ .|++.|..++.+
T Consensus 60 ~lsNyRl~fks~~t~~~~~~~VPLg~Ie~vek~~~~~~g~ns~~L~i~CKDmr~lR~~fk~~~q~r~~~~e~L~~~~~p 138 (717)
T KOG4471|consen 60 ALSNYRLYFKSKETDPPFVLDVPLGVIERVEKRGGATSGENSFGLEITCKDMRNLRCAFKQEEQCRRDWFERLNRAAFP 138 (717)
T ss_pred EeeeeEEEEEeccCCCceeEeechhhhhhhhhcCccccCCcceeEEEEeccccceeeecCcccccHHHHHHHHHHhcCC
Confidence 456677766666666677888888432 23332221111234667778899999999999998888 999999998754
No 103
>KOG3551|consensus
Probab=76.52 E-value=5.5 Score=32.15 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=59.9
Q ss_pred CCCCcccccCCceEEeeCCeEEEEcCCCC-----CcccEEEEcCCeEEeecCCCC---cccceeeEEEee---CCceEEE
Q psy4640 13 SPSSRKSVGSDLDSIGSRNGLAVTDRFEE-----EKLLGSILLPSYKISPCSSDD---KVFRKFSFKAEH---ANMRTYY 81 (109)
Q Consensus 13 ~~~~~~~~~~~~~~vL~~~~L~yyk~~~d-----~~p~G~I~L~~~~V~~~~~~~---~~~k~~~F~i~~---~~~r~y~ 81 (109)
.+..+.+.++...++|++..|.+|.+-.. ..|.-+.+|--.++.-..+.. ...-...|...+ -+-++|.
T Consensus 302 ~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGTrqGV~thl 381 (506)
T KOG3551|consen 302 VSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGTRQGVETHL 381 (506)
T ss_pred ccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEecccccceEEEE
Confidence 34455666777788999999988886532 367788888655543333210 011234677654 3457999
Q ss_pred EEcCCHHHHHHHHHHHHHhh
Q psy4640 82 FAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 82 fsA~s~~e~~~Wi~aI~~a~ 101 (109)
|.+|+..|+-.|..+|-.-.
T Consensus 382 frvEThrdLa~WtRslVqGc 401 (506)
T KOG3551|consen 382 FRVETHRELAAWTRSLVQGC 401 (506)
T ss_pred EEeccHHHHHHHHHHHHHHH
Confidence 99999999999999886543
No 104
>KOG1170|consensus
Probab=75.85 E-value=1.1 Score=39.02 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=31.8
Q ss_pred cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
+-++.|.+.++. |+..++|++..||..||++++.....+
T Consensus 59 n~~~sf~vi~~~-rk~r~~adn~ke~e~wi~~~kt~q~~e 97 (1099)
T KOG1170|consen 59 NPRPSFCVITPV-RKHRLCADNRKEMEKWINQSKTPQHLE 97 (1099)
T ss_pred CCCCCeeEeccc-HHhhhhccchhHHHHhhccccchhhcc
Confidence 346778888765 899999999999999999998755433
No 105
>KOG0248|consensus
Probab=75.39 E-value=1.7 Score=37.23 Aligned_cols=79 Identities=18% Similarity=0.064 Sum_probs=54.7
Q ss_pred ceEEeeCCeEEEEcCCCCCcccEEEEcCCe-EEee---cCC-C---C----cccceeeEEEee-CCceEEEEEcCCHHHH
Q psy4640 24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSY-KISP---CSS-D---D----KVFRKFSFKAEH-ANMRTYYFAADTRESM 90 (109)
Q Consensus 24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~-~V~~---~~~-~---~----~~~k~~~F~i~~-~~~r~y~fsA~s~~e~ 90 (109)
.|+.|.+-+++|||+-.+..|.|..++..- .++. +.. + . ...+.|+.-+.+ .++-+|||.-.+.++-
T Consensus 375 v~~alv~~~~~~~k~~~d~rp~g~l~~~~~h~~ee~~s~~sde~~e~~~~r~l~~~~~~l~~~~~~~~p~yLi~~t~e~k 454 (936)
T KOG0248|consen 375 VFAALVNQKLMFFKNSNDLVPNGFLCLQEKHNGTEEYSGSSDEQLETTKEHPQRKNNDSLCVQIANEDPVYLILRTSEDK 454 (936)
T ss_pred eeeeeeeeeeEEeecccccccccccchhhhhcceeeccCCchhhhhhhcCccccccCceEEeccCCCCCEEEEeeecccc
Confidence 456789999999999999999999999432 2221 111 1 0 112335555543 3456899999999999
Q ss_pred HHHHHHHHHhhh
Q psy4640 91 IQWMNALSLASI 102 (109)
Q Consensus 91 ~~Wi~aI~~a~~ 102 (109)
.-|+-.+..|.-
T Consensus 455 ~~wly~l~~A~g 466 (936)
T KOG0248|consen 455 EKWLYYLKSASG 466 (936)
T ss_pred ceeeeeehhhcc
Confidence 999988877764
No 106
>KOG3551|consensus
Probab=68.79 E-value=9.7 Score=30.79 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=38.4
Q ss_pred cEEEEcCCeEEee-cCCCCcccceeeEEEeeCC-ceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 45 LGSILLPSYKISP-CSSDDKVFRKFSFKAEHAN-MRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 45 ~G~I~L~~~~V~~-~~~~~~~~k~~~F~i~~~~-~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
...|+|.=|.|.. ....|. ..-+|+|..|+ ..+.++.|.+..+.+.|.+||..+..
T Consensus 215 ~k~IpLKm~yvaR~~~~~Dp--EnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~ 272 (506)
T KOG3551|consen 215 RKTIPLKMAYVARNLIDADP--ENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVN 272 (506)
T ss_pred ccccchhhHHHHhhCCCCCc--ccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHh
Confidence 4678887665422 111111 13479997765 45889999999999999999987653
No 107
>KOG1738|consensus
Probab=67.51 E-value=0.26 Score=41.23 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=62.3
Q ss_pred CCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 22 SDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 22 ~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
..++.++++...+.|......++.+.+.+...++..... ....+.++.-++....|++.+++..++..|+..+-.+.
T Consensus 86 ~~~~~~~~~~~~~~y~~~~s~K~~n~vl~~v~~l~~aak---~l~~wldR~pf~~~~df~~~~nnV~el~~eL~~~v~~d 162 (638)
T KOG1738|consen 86 KKLWTSLKNLQEYAYSNQESEKADNFVLLAVVELIRAAK---ALLFWLDRTPFPQIKDFSFACNNVQELNLELNTLVHAD 162 (638)
T ss_pred HHHHHHhccccccccccchhhcCccccchhhhhhhHHHH---HHHHHhhhCCccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 335567888889999988889999999887765432211 12234555556666789999999999999999998887
Q ss_pred hhccCCCC
Q psy4640 102 ILQNSSTG 109 (109)
Q Consensus 102 ~~~~~~~~ 109 (109)
..+.+.+|
T Consensus 163 ~~a~e~t~ 170 (638)
T KOG1738|consen 163 IHALETTG 170 (638)
T ss_pred hhhhccCC
Confidence 76665554
No 108
>KOG2996|consensus
Probab=61.58 E-value=14 Score=31.45 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCC-CcccEEEEcCCeEEeecCCCCccc-------ceeeEEEeeC-CceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 30 RNGLAVTDRFEE-EKLLGSILLPSYKISPCSSDDKVF-------RKFSFKAEHA-NMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 30 ~~~L~yyk~~~d-~~p~G~I~L~~~~V~~~~~~~~~~-------k~~~F~i~~~-~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
|-.+..-|-..+ -+....|.|..+.+...+..++.+ ..|.|-|++. +..-|.|.+.+++-...||+++..|
T Consensus 431 DkvviVCKrkG~sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema 510 (865)
T KOG2996|consen 431 DKVVIVCKRKGDSYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMA 510 (865)
T ss_pred cceEEEeeccCcchhHHHHHHHHhhccccCCCCchhhhhccceeeeeeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHH
Confidence 333334443333 244567778777765433322212 3477888753 3446788889999999999999988
Q ss_pred hhhccC
Q psy4640 101 SILQNS 106 (109)
Q Consensus 101 ~~~~~~ 106 (109)
.....|
T Consensus 511 ~SNi~P 516 (865)
T KOG2996|consen 511 KSNISP 516 (865)
T ss_pred HhcCCc
Confidence 765443
No 109
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=59.31 E-value=15 Score=23.17 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=23.7
Q ss_pred eeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 68 FSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 68 ~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
|.||+..|.+|++-|.+...+.+.+=++.|.+
T Consensus 1 f~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~ 32 (86)
T cd06409 1 FAFKFKDPKGRVHRFRLRPSESLEELRTLISQ 32 (86)
T ss_pred CcEEeeCCCCCEEEEEecCCCCHHHHHHHHHH
Confidence 57888888899999998855555555555544
No 110
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=55.26 E-value=48 Score=20.48 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=17.1
Q ss_pred eeeEEEeeCCceEEEEEcCCHHHH
Q psy4640 67 KFSFKAEHANMRTYYFAADTRESM 90 (109)
Q Consensus 67 ~~~F~i~~~~~r~y~fsA~s~~e~ 90 (109)
...+.|.+.+ ++|+|+.++.+++
T Consensus 70 ~~~i~I~t~~-~~y~isp~~~~~f 92 (100)
T PF10882_consen 70 KNVILIKTKD-KTYVISPEDPEEF 92 (100)
T ss_pred CCEEEEEECC-ceEEEcCCCHHHH
Confidence 3466776666 8999988887765
No 111
>KOG4305|consensus
Probab=47.96 E-value=21 Score=32.05 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCceEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 75 ANMRTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 75 ~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
.-.+.|.+.|++..+++.|++.|..|....
T Consensus 660 a~~~~ftly~~s~~~r~~w~ekI~~aq~~~ 689 (1029)
T KOG4305|consen 660 ARGASFTLYAESLNGRDQWVEKIKQAQKRS 689 (1029)
T ss_pred ccceEEEeeccchHHhhhHHhhhhHHHHhh
Confidence 445899999999999999999999987654
No 112
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=46.89 E-value=33 Score=28.00 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=49.9
Q ss_pred CCccccCCCCCcccccCCceE-Ee-eCCeEEEEcCCC-----CCcccEEEEcCCeEE--eecCCCCcccceeeEEEe-eC
Q psy4640 6 PDFLSSSSPSSRKSVGSDLDS-IG-SRNGLAVTDRFE-----EEKLLGSILLPSYKI--SPCSSDDKVFRKFSFKAE-HA 75 (109)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-vL-~~~~L~yyk~~~-----d~~p~G~I~L~~~~V--~~~~~~~~~~k~~~F~i~-~~ 75 (109)
.+...+.+.+.+-.+++-+.. -| .++.|-|-...+ +++.+|... +|-+| ...-+ ......||--. .-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~ 79 (481)
T PLN02958 3 DELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVI-EGSKIRVKTIVE--KGGGICCRGSAGAL 79 (481)
T ss_pred CcCCCCceeeeeEEECCEEeeEEeccCCEEEeecCCcceEEEeeeeeEEEE-eCCEEEEEEEEe--cCCcccccCCCCCc
Confidence 344444455666666665554 34 567777764222 123333322 23222 11111 01123344321 12
Q ss_pred CceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 76 NMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 76 ~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
..+.|.|.+.+.+.++.|+++|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~ 105 (481)
T PLN02958 80 ARKDFVFEPLSDESRRLWCQKLRDYL 105 (481)
T ss_pred eeeeEEEeCCCHHHHHHHHHHHHHHH
Confidence 24689999999999999999998755
No 113
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=46.47 E-value=30 Score=26.05 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640 79 TYYFAADTRESMIQWMNALSLASIL 103 (109)
Q Consensus 79 ~y~fsA~s~~e~~~Wi~aI~~a~~~ 103 (109)
+-|++|+|.+|.-+|+..|+.|+..
T Consensus 250 ~~~iaapsREdave~l~iik~a~~~ 274 (290)
T COG4026 250 TVYIAAPSREDAVEELEIIKEAIEE 274 (290)
T ss_pred eeeeecCchHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998643
No 114
>KOG0689|consensus
Probab=42.85 E-value=32 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.5
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 78 RTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 78 r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
.+|-++|.|.++.+.|+++|......|
T Consensus 337 ~~~vlqa~s~~~k~~W~~~i~~~l~~Q 363 (448)
T KOG0689|consen 337 EAYVLQAGSKEIKYAWTRAISSLLWQQ 363 (448)
T ss_pred ceeEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999998866544
No 115
>KOG1737|consensus
Probab=42.24 E-value=16 Score=31.93 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=47.6
Q ss_pred ceEEeeCCeEEEEcCCCC--CcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 24 LDSIGSRNGLAVTDRFEE--EKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 24 ~~~vL~~~~L~yyk~~~d--~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
-|++|.++.|-||++... ....|.|.+....|.... ...+.+..-+.+.|+..+-+..+.+.|+.++..+.
T Consensus 96 r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~-------~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~l~~ 168 (799)
T KOG1737|consen 96 RWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGE-------RMDICSVDGSCQIYLVELSKKLQRQGWLHALELAP 168 (799)
T ss_pred ceEEecCcceeeeccCCccccCCCCcccccccccccCC-------CcccchhhcccchhhhhhhHHHhhcchhhhhhhcc
Confidence 367777888889987653 456677777544332211 11122222225789999999999999999999883
No 116
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=38.89 E-value=1.2e+02 Score=20.33 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=42.4
Q ss_pred EEeeCCeEEEEcCCCCCcccEEEEcC--CeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHH
Q psy4640 26 SIGSRNGLAVTDRFEEEKLLGSILLP--SYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95 (109)
Q Consensus 26 ~vL~~~~L~yyk~~~d~~p~G~I~L~--~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~ 95 (109)
..+-|..+.+|.+. .+...|.++ ......++-.-+.+.-..|.|.+...-+|.|++.+.....+.|.
T Consensus 27 imiGDkaFEFyn~~---n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~~G~f~Fsskd~k~~Lk~~r 95 (118)
T PF06115_consen 27 IMIGDKAFEFYNDR---NVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKKNGKFTFSSKDSKKVLKAIR 95 (118)
T ss_pred EEEcccceEeecCC---ChhhcEEeChhheeEEEEEEEECCCEEeeEEEEECCCCEEEEEECChHHHHHHHH
Confidence 45566778888854 566666664 43321222111123445699988776799999999988877664
No 117
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=38.76 E-value=1.2e+02 Score=21.43 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=44.0
Q ss_pred EEeeCCeEEEEc-----CCCCCcccEEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 26 SIGSRNGLAVTD-----RFEEEKLLGSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 26 ~vL~~~~L~yyk-----~~~d~~p~G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
-+|++..||... +.........|+|...+ |+..+..| .-+++.+ ++.--+.|.++...|+ +..|..
T Consensus 70 livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D---~~~vihv--~~~~D~il~~~~k~El---v~~L~~ 141 (199)
T PF06017_consen 70 LIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSD---NFFVIHV--PGEGDLILESDFKTEL---VTILCK 141 (199)
T ss_pred EEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCC---CEEEEEE--CCCCCEEEEeCcHHHH---HHHHHH
Confidence 488999999996 66667788999998764 44433322 1234555 4445688999888554 444444
Q ss_pred hh
Q psy4640 100 AS 101 (109)
Q Consensus 100 a~ 101 (109)
+.
T Consensus 142 ~~ 143 (199)
T PF06017_consen 142 AY 143 (199)
T ss_pred HH
Confidence 43
No 118
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=36.13 E-value=46 Score=17.68 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=14.6
Q ss_pred cceeeEEEeeCCceEEEEEcCCH
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTR 87 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~ 87 (109)
.++.++++ +.++|||.+++=
T Consensus 10 ~eP~~~k~---~~~~y~fCC~tC 29 (37)
T PF08394_consen 10 GEPIVVKI---GNKVYYFCCPTC 29 (37)
T ss_pred CCEEEEEE---CCeEEEEECHHH
Confidence 34777887 348999998764
No 119
>KOG0592|consensus
Probab=35.75 E-value=71 Score=27.04 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=45.6
Q ss_pred EEeeC-CeEEEEcCCCCCcccEEEEcCCe-EEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 26 SIGSR-NGLAVTDRFEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 26 ~vL~~-~~L~yyk~~~d~~p~G~I~L~~~-~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
.+|+. ..|+|+. +......|.|++..+ .++.. ....|.|.+|. |+|+|-- =+.....|-.||..+.
T Consensus 470 lllTn~~rll~~~-~~~~~lk~eip~~~~~~~e~~-------n~~~~~i~TP~-k~~~l~d-~~~~as~w~~ai~~~~ 537 (604)
T KOG0592|consen 470 LLLTNGPRLLYVD-PQNLVLKGEIPWSPDLRVELK-------NSSTFFIHTPN-KVYYLED-PEQRASVWCKAIETVR 537 (604)
T ss_pred EEecCCCeEEEEe-cccceeccccccCcccceeec-------cCcceEEECCc-cceeccC-cccchhHHHHhhhhhh
Confidence 35544 5566665 556788899999653 44432 23468888787 8888875 4566789999999983
No 120
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=35.00 E-value=25 Score=21.41 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHhhhhcc
Q psy4640 85 DTRESMIQWMNALSLASILQN 105 (109)
Q Consensus 85 ~s~~e~~~Wi~aI~~a~~~~~ 105 (109)
-++.++++||+.|..+...|.
T Consensus 35 ~~~~e~e~~l~~Ii~~v~kq~ 55 (73)
T PF12213_consen 35 LSEEEREDWLDKIIDAVQKQP 55 (73)
T ss_dssp S-TTTHHHHHHHHHHHHTTS-
T ss_pred CCHHHHHHHHHHHHHHHhcCC
Confidence 357789999999999887763
No 121
>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=33.92 E-value=1.5e+02 Score=20.05 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=31.4
Q ss_pred EEEEcCCeE-EeecCCCCcccceeeEEEeeCC---ceEEEEEcCC-HHHHHHHHHHHHHh
Q psy4640 46 GSILLPSYK-ISPCSSDDKVFRKFSFKAEHAN---MRTYYFAADT-RESMIQWMNALSLA 100 (109)
Q Consensus 46 G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~---~r~y~fsA~s-~~e~~~Wi~aI~~a 100 (109)
-.|+|...+ |..+.+.+.+.+-|.+-+..|+ .+-|.|+-.+ +.+...|+..|.+.
T Consensus 67 ~lmpLs~IkrVvdI~DtE~c~~aF~L~~R~p~d~~~~L~sF~l~~Ee~~K~~~Lk~Lcr~ 126 (129)
T cd01229 67 HLMPLSQIKKVLDIRDTEDCHNAFALLVRPPTEQANVLLSFQMTSEELPKEVWLKMLCRH 126 (129)
T ss_pred EEeEhHHeEEEEeeeccccccceeEEEEeCCccchheEEEEEecCCcchHHHHHHHHHHH
Confidence 466776553 3333332234555555554443 5677777544 34567899988764
No 122
>KOG4047|consensus
Probab=30.83 E-value=40 Score=27.37 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=35.8
Q ss_pred EEEEcCCeE-EeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhh
Q psy4640 46 GSILLPSYK-ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASIL 103 (109)
Q Consensus 46 G~I~L~~~~-V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~ 103 (109)
..+.|.+|. |+...-+-.....+.|...... . +|.+++.-+...||++|..-...
T Consensus 64 R~~~ls~~~S~e~~~~~~~~~~i~~~f~~~a~-e--~~~~~q~l~~~~w~~~i~~~~~~ 119 (429)
T KOG4047|consen 64 RYGYLSNLFSFESGRRCQTGPGITAFFCDRAE-E--LFNMLQDLMQANWINAIEEPAIP 119 (429)
T ss_pred eeEeeccceeeecccccccCCCceEEEecchH-H--HHHHHHHHHhhhhhhhhhhcccc
Confidence 577888875 4443222112334566654333 2 88899999999999999887665
No 123
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=30.39 E-value=83 Score=19.48 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.1
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 78 RTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 78 r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
..+-|.++|.+++.+|.+.|..+-.
T Consensus 64 ~h~af~v~~~~~v~~~~~~l~~~G~ 88 (121)
T cd09013 64 GHIAWRASSPEALERRVAALEASGL 88 (121)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCC
Confidence 3577889999999999999988644
No 124
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.71 E-value=35 Score=24.29 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=11.6
Q ss_pred eCCceEEEEEcCCH
Q psy4640 74 HANMRTYYFAADTR 87 (109)
Q Consensus 74 ~~~~r~y~fsA~s~ 87 (109)
.|+.|+|||+|-+.
T Consensus 16 ~PG~RtFyLQa~~g 29 (171)
T PF11290_consen 16 QPGQRTFYLQARSG 29 (171)
T ss_pred CCCceEEEEEEeeC
Confidence 48899999998664
No 125
>KOG3492|consensus
Probab=28.71 E-value=54 Score=23.21 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.2
Q ss_pred cceeeEEEeeCCceEEEEE
Q psy4640 65 FRKFSFKAEHANMRTYYFA 83 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fs 83 (109)
..+|||.+. . .|.||.+
T Consensus 32 D~~~cfrlh-k-dRVyyvs 48 (180)
T KOG3492|consen 32 DGTYCFRLH-K-DRVYYVS 48 (180)
T ss_pred CCceeeEee-C-ceEEeeh
Confidence 458999984 4 4999986
No 126
>KOG3518|consensus
Probab=28.32 E-value=34 Score=27.39 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=27.2
Q ss_pred EEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy4640 70 FKAEHANMRTYYFAADTRESMIQWMNALSLASILQN 105 (109)
Q Consensus 70 F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~~~~ 105 (109)
|....|. -.|.|.|.|.++..-||..|.+.+...+
T Consensus 402 ~~fdnpk-aq~~fma~sme~kr~wm~elkrlildh~ 436 (521)
T KOG3518|consen 402 FHFDNPK-AQHTFMAKSMEDKRLWMLELKRLILDHH 436 (521)
T ss_pred EecCCcc-hhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 3334454 4699999999999999999998775543
No 127
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.05 E-value=1.3e+02 Score=18.65 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.6
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 78 RTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 78 r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
..+.|.+++.++.+.|.+.+..+-
T Consensus 70 ~~l~f~v~~~~~vd~~~~~l~~~G 93 (124)
T cd09012 70 VLISLSADSREEVDELVEKALAAG 93 (124)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHCC
Confidence 457899999999999999998764
No 128
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.58 E-value=99 Score=19.02 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.0
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 78 RTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 78 r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
..+.|.+++.++.+.|.+.+..+
T Consensus 66 ~hi~f~v~~~~~v~~~~~~~~~~ 88 (123)
T cd07262 66 THVAFAAPSREAVDAFHAAALAA 88 (123)
T ss_pred eEEEEECCCHHHHHHHHHHHHHc
Confidence 36789999999999999998876
No 129
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=27.11 E-value=45 Score=23.87 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.3
Q ss_pred eCCceEEEEEcCCH
Q psy4640 74 HANMRTYYFAADTR 87 (109)
Q Consensus 74 ~~~~r~y~fsA~s~ 87 (109)
.|+.|+|||+|...
T Consensus 18 ~PG~RtFyLQa~~g 31 (177)
T TIGR03847 18 PPGARTFYLQAREG 31 (177)
T ss_pred CCCceEEEEEeccC
Confidence 48899999998753
No 130
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=26.58 E-value=1e+02 Score=19.92 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=32.4
Q ss_pred ccEEEEcCCeEEeecCCCCcccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 44 LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 44 p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
..+.+.|.+..+...+.. ..|... + .-++.+.++|++|.++.-++|..-
T Consensus 47 ~ha~l~i~g~~lm~~D~~------~~~~~~-~-~~sl~i~~~~~ee~~~~f~~Ls~g 95 (116)
T PF06983_consen 47 MHAELTIGGQKLMASDGG------PDFPFG-N-NISLCIECDDEEEIDRIFDKLSEG 95 (116)
T ss_dssp EEEEEEETTEEEEEEEES------TS-----T-TEEEEEEESSHHHHHHHHHHHHTT
T ss_pred EEEEEEECCeEEEEECCC------CCCCCC-C-cEEEEEEcCCHHHHHHHHHHHHcC
Confidence 446777777776543321 223332 3 468999999999999999999764
No 131
>PLN02204 diacylglycerol kinase
Probab=25.95 E-value=1.4e+02 Score=25.51 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.7
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 78 RTYYFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 78 r~y~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
..|.|.+.+....+.|++.|.......
T Consensus 129 ~~~~f~~~d~~~~~~w~~~l~~~l~~~ 155 (601)
T PLN02204 129 AVYTFGHKDLQTCQSWVDRLNASLNKE 155 (601)
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHhhc
Confidence 469999999999999999999887643
No 132
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=25.74 E-value=1.3e+02 Score=18.10 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=24.7
Q ss_pred eCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 74 HANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 74 ~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
..+...+.+.++++.+.+++++.|+.|..
T Consensus 45 ~~Gd~l~~i~~~~~~~~~~a~~~~~~a~~ 73 (75)
T PF07831_consen 45 EKGDPLATIYANDEARLEEAVERLRAAIT 73 (75)
T ss_dssp BTTSEEEEEEESSSSHHHHHHHHHHHHEE
T ss_pred CCCCeEEEEEcCChHHHHHHHHHHHhCcc
Confidence 45667889999999999999999998753
No 133
>KOG3549|consensus
Probab=25.31 E-value=38 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=29.0
Q ss_pred cceeeEEEee-CCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 65 FRKFSFKAEH-ANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 65 ~k~~~F~i~~-~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
-+.+.|++.. .+--+=.+.+++.++..+|++||...+.
T Consensus 223 lRqNAFeV~aldGvstGii~c~~a~d~~dWL~ait~Ni~ 261 (505)
T KOG3549|consen 223 LRQNAFEVRALDGVSTGIIHCDEAADLSDWLKAITDNIV 261 (505)
T ss_pred hhhccceEEeecccccceeEEhhhhHHHHHHHHHHHHHH
Confidence 4578899753 3334558999999999999999987553
No 134
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.10 E-value=58 Score=21.17 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=18.4
Q ss_pred EEEcCCHHHHHHHHHHHHHhhhhc
Q psy4640 81 YFAADTRESMIQWMNALSLASILQ 104 (109)
Q Consensus 81 ~fsA~s~~e~~~Wi~aI~~a~~~~ 104 (109)
+..|+|..|-.+|++|.-+--++.
T Consensus 19 CV~aPtsKdt~eWLeaalkRKyp~ 42 (106)
T COG4837 19 CVNAPTSKDTYEWLEAALKRKYPN 42 (106)
T ss_pred hcCCCcchhHHHHHHHHHhccCCC
Confidence 567889999999999876644443
No 135
>PHA03001 putative virion core protein; Provisional
Probab=24.67 E-value=57 Score=22.24 Aligned_cols=18 Identities=6% Similarity=-0.167 Sum_probs=14.5
Q ss_pred CCceEEeeCCeEEEEcCC
Q psy4640 22 SDLDSIGSRNGLAVTDRF 39 (109)
Q Consensus 22 ~~~~~vL~~~~L~yyk~~ 39 (109)
+.|+.|+++.-|+|||-.
T Consensus 52 StFylvvrd~diFyfkcd 69 (132)
T PHA03001 52 STFYLVVKDKDIFYFKCD 69 (132)
T ss_pred cEEEEEEecCcEEEEEec
Confidence 346679999999999954
No 136
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=1.6e+02 Score=19.40 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.3
Q ss_pred cceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
.+...|.+.|++. .++|.+|..+|+.++-.+-
T Consensus 17 RkEi~~~v~h~g~-----~TPSr~evrekla~~l~~d 48 (107)
T COG2004 17 RKEIVFVVYHEGS-----PTPSRKEVREKLAAMLGAD 48 (107)
T ss_pred ceEEEEEEEeCCC-----CCCCHHHHHHHHHHHHCCC
Confidence 5578899999885 4789999999999987653
No 137
>KOG2461|consensus
Probab=23.83 E-value=30 Score=27.69 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=31.3
Q ss_pred ccceeeEEEeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 64 VFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 64 ~~k~~~F~i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
.+..|...|..++ .-|++...+.+++..||..++.|.-
T Consensus 72 ~n~~y~W~I~~~d-~~~~~iDg~d~~~sNWmRYV~~Ar~ 109 (396)
T KOG2461|consen 72 ANNRYMWEIFSSD-NGYEYIDGTDEEHSNWMRYVNSARS 109 (396)
T ss_pred ccCcceEEEEeCC-CceEEeccCChhhcceeeeecccCC
Confidence 3567888987666 6789999999999999999887753
No 138
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=23.61 E-value=93 Score=19.86 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhhhccCCC
Q psy4640 87 RESMIQWMNALSLASILQNSST 108 (109)
Q Consensus 87 ~~e~~~Wi~aI~~a~~~~~~~~ 108 (109)
+++.+.|++.|...-..-.|+|
T Consensus 34 Eq~~q~Wl~sI~ekd~nlvPIG 55 (92)
T PF15243_consen 34 EQQHQAWLQSIAEKDNNLVPIG 55 (92)
T ss_pred HHHHHHHHHHHHHhccCcCccC
Confidence 4566889999998776666654
No 139
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=23.44 E-value=1.3e+02 Score=20.45 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.8
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhh
Q psy4640 78 RTYYFAADTRESMIQWMNALSLAS 101 (109)
Q Consensus 78 r~y~fsA~s~~e~~~Wi~aI~~a~ 101 (109)
-=|-|.+.|++..++=|.+|.+|-
T Consensus 102 ~CyVFqc~Se~la~eI~lti~QAF 125 (129)
T cd01269 102 ICYVFQCADESLVDEVMLTLKQAF 125 (129)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHH
Confidence 357899999999999999998874
No 140
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=23.35 E-value=73 Score=16.95 Aligned_cols=12 Identities=8% Similarity=0.786 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHH
Q psy4640 88 ESMIQWMNALSL 99 (109)
Q Consensus 88 ~e~~~Wi~aI~~ 99 (109)
+|.+.||..|..
T Consensus 14 ddiqkwirnit~ 25 (40)
T PF13124_consen 14 DDIQKWIRNITF 25 (40)
T ss_pred HHHHHHHHHHHH
Confidence 688999998764
No 141
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=23.04 E-value=1.7e+02 Score=18.70 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCHHHHHHHHHHHHHh
Q psy4640 75 ANMRTYYFAADTRESMIQWMNALSLA 100 (109)
Q Consensus 75 ~~~r~y~fsA~s~~e~~~Wi~aI~~a 100 (109)
.+-..+.++|+|++.+++=.++|+.+
T Consensus 69 ~GvH~HtI~a~~~e~l~~I~~~L~~~ 94 (98)
T PF02829_consen 69 GGVHYHTIEAPDEEDLDKIEEALKKK 94 (98)
T ss_dssp GGEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCEeeEEEEECCHHHHHHHHHHHHHC
Confidence 35568899999999999999999875
No 142
>PRK11370 YciI-like protein; Reviewed
Probab=22.96 E-value=1.2e+02 Score=18.91 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=17.1
Q ss_pred ceEEEEEcCCHHHHHHHHHH
Q psy4640 77 MRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 77 ~r~y~fsA~s~~e~~~Wi~a 96 (109)
...+.+.|+|.++.++|++.
T Consensus 58 G~~ii~ea~s~~~a~~~~~~ 77 (99)
T PRK11370 58 GSTVIAEFESLEAAQAWADA 77 (99)
T ss_pred ceEEEEEECCHHHHHHHHHC
Confidence 35788899999999999873
No 143
>TIGR01629 rep_II_X phage/plasmid replication protein, gene II/X family. This model represents a family of phage and plasmid replication proteins. In bacteriophage IKe and related phage, the full-length protein is designated gene II protein. A much shorter protein of unknown function, translated from a conserved in-frame alternative initiator, is designated gene X protein. Members of this family also include plasmid replication proteins. This model is built as a fragment model to better detect translations from alternate intiators and other fragments relative to full length gene II protein.
Probab=22.76 E-value=1.3e+02 Score=23.58 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.1
Q ss_pred eEEEEEcCCHHHHHHHHHHHHHhhhhcc
Q psy4640 78 RTYYFAADTRESMIQWMNALSLASILQN 105 (109)
Q Consensus 78 r~y~fsA~s~~e~~~Wi~aI~~a~~~~~ 105 (109)
-||-|...+..+...||.+++..+..++
T Consensus 123 ~T~~~~l~~~~~~~~~l~~~~~~s~~r~ 150 (345)
T TIGR01629 123 VTYSFKLANDHIVRQWLSAAENVANGQH 150 (345)
T ss_pred EEeeeecCCHHHHHHHHHHHHhhhhccc
Confidence 5889999999999999999999887665
No 144
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=22.71 E-value=1.1e+02 Score=20.62 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=14.5
Q ss_pred cceeeEEEeeCCceEEEEEcCCH
Q psy4640 65 FRKFSFKAEHANMRTYYFAADTR 87 (109)
Q Consensus 65 ~k~~~F~i~~~~~r~y~fsA~s~ 87 (109)
++.|.|.+..|..-.|.+.|++.
T Consensus 94 ~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 94 KNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp SSSEEEEEE-TT--EEEEE--S-
T ss_pred CCceEEEEECCCCCEEEEEEcCC
Confidence 56789999888878899999874
No 145
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=22.48 E-value=1.3e+02 Score=19.61 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=21.3
Q ss_pred cCCceEEeeCCeEEEEcCCCCCcccEEEEcCC
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPS 52 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~ 52 (109)
++.+...|+.+.|.|++...+..+.-+|.++.
T Consensus 44 ~e~~~l~l~NgvL~~~~~~~~~~ad~tlt~~~ 75 (125)
T PF14864_consen 44 GEQYTLELRNGVLNYRKGSPSPDADATLTLTR 75 (125)
T ss_dssp TEEEEEEEETTEEEEEET---TT-SEEEEE-H
T ss_pred CCeEEEEEECCEEEeecCCCCCCCCEEEEECH
Confidence 34556689999999999887788888887753
No 146
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=22.34 E-value=1.9e+02 Score=17.34 Aligned_cols=30 Identities=7% Similarity=0.115 Sum_probs=25.7
Q ss_pred EeeCCceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 72 AEHANMRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 72 i~~~~~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
+...+ |+..+++.|..++..||..|..+.-
T Consensus 26 v~~dg-rsV~Yt~a~i~~L~~yI~~L~~~Lg 55 (68)
T PF02831_consen 26 VQGDG-RSVTYTQANIGDLRAYIQQLEAQLG 55 (68)
T ss_dssp EEETT-EEEEEEGGGHHHHHHHHHHHHHHTT
T ss_pred eecCC-eEEEEecCCHHHHHHHHHHHHHHhC
Confidence 55555 9999999999999999999998753
No 147
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=22.26 E-value=2.1e+02 Score=17.93 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=46.1
Q ss_pred ceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEe---eCCceEEEEEcCCHHHHHHHHHHHHH
Q psy4640 24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---HANMRTYYFAADTRESMIQWMNALSL 99 (109)
Q Consensus 24 ~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~---~~~~r~y~fsA~s~~e~~~Wi~aI~~ 99 (109)
..-.|.++.|.+ .+.....+....||...+ .... ....|.|++- ..+.-.|.|.+++.+++-+=|.+...
T Consensus 24 ~~L~l~~~~l~L-~~~~~~~~~~~Wpl~~lR--ryG~---~~~~F~fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~~i~ 96 (100)
T PF02174_consen 24 YLLCLTPDELIL-IDPQSGEPILEWPLRYLR--RYGR---DDGIFSFEAGRRCPTGEGLFWFQTPDAEEIFETVERAIK 96 (100)
T ss_dssp EEEEEESSEEEE-EETTTTEEEEEEEGGGEE--EEEE---ETTEEEEEESTTSTTCSEEEEEEESTHHHHHHHHHHHHH
T ss_pred EEEEECCCEEEE-ecCCCCceEEEEEhHHhh--hhcc---CCCEEEEEECCcCCCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence 345677888888 444567889999997543 2222 1346788873 24566899999998887655544433
No 148
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=22.20 E-value=3e+02 Score=19.64 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=19.2
Q ss_pred CCCCccccCCCCCcccccCCceEEeeCCeEEEEcCCCCCcc
Q psy4640 4 RNPDFLSSSSPSSRKSVGSDLDSIGSRNGLAVTDRFEEEKL 44 (109)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vL~~~~L~yyk~~~d~~p 44 (109)
+.-.+.|...| .+..-.. ++.+|++.-+++..+.....+
T Consensus 68 ~T~GH~H~~~~-~~~~~pE-vY~vl~G~g~~lLq~~~~~~~ 106 (182)
T PF06560_consen 68 MTKGHYHPISP-CGLSYPE-VYEVLSGEGLILLQKEEGDDV 106 (182)
T ss_dssp B---BB-SS-----TT--E-EEEEEESSEEEEEE-TTS---
T ss_pred cCCCccCCccc-cCCCCCc-EEEEEeCEEEEEEEecCCCcc
Confidence 34455666666 5555555 688999999999988755333
No 149
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.01 E-value=2.7e+02 Score=19.10 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=41.2
Q ss_pred cCCceEEeeCCeEEEEcCCCCCcccEEEEcCCeEEeecCCCCcccceeeEEEeeCCce---EEEEEcCCH
Q psy4640 21 GSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMR---TYYFAADTR 87 (109)
Q Consensus 21 ~~~~~~vL~~~~L~yyk~~~d~~p~G~I~L~~~~V~~~~~~~~~~k~~~F~i~~~~~r---~y~fsA~s~ 87 (109)
|+++..+|.++.|-.-. +++...+-+-||....|--+...+ .+.|+|.......+ -+-|.|+..
T Consensus 52 Gk~~~m~L~~g~lkLiD-P~~~s~LhSqPI~~IRvwGvGrdn--grdFA~vard~~T~~~~CHVFRC~~p 118 (138)
T cd01272 52 GKDLFMDLDEGALKLID-PENLTVLHSQPIHTIRVWGVGRDN--GRDFAYVIRDERTRGSNCHVFRCDTR 118 (138)
T ss_pred cceeEEEecCCceEeeC-CCCCceEEeeeeeEEEEEEecCCC--CcceEEEeecCCCceeEEEEEEcCCC
Confidence 45566789999887764 556777888888877766555432 45688876544333 345666543
No 150
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=21.96 E-value=55 Score=20.89 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=13.3
Q ss_pred cCCHHHHHHHHHHHHHh
Q psy4640 84 ADTRESMIQWMNALSLA 100 (109)
Q Consensus 84 A~s~~e~~~Wi~aI~~a 100 (109)
.=|.+|..+|+.++...
T Consensus 60 ~Ls~eEf~~W~~av~rh 76 (90)
T PF06627_consen 60 GLSEEEFESWQRAVDRH 76 (90)
T ss_dssp TSSHHHHHHHHHHCCT-
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45789999999987653
No 151
>PRK12866 YciI-like protein; Reviewed
Probab=21.95 E-value=1.1e+02 Score=19.22 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.4
Q ss_pred ceEEEEEcCCHHHHHHHHHH
Q psy4640 77 MRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 77 ~r~y~fsA~s~~e~~~Wi~a 96 (109)
.-.+.+.|+|.++.+.|+++
T Consensus 49 G~~ii~~a~s~~e~~~~l~~ 68 (97)
T PRK12866 49 GAVLVFEGDSPAAAEAFARA 68 (97)
T ss_pred cEEEEEEeCCHHHHHHHHHc
Confidence 34667799999999999874
No 152
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=21.84 E-value=61 Score=19.95 Aligned_cols=21 Identities=24% Similarity=0.692 Sum_probs=15.1
Q ss_pred CceEEEEEcCCHHHHHHHHHH
Q psy4640 76 NMRTYYFAADTRESMIQWMNA 96 (109)
Q Consensus 76 ~~r~y~fsA~s~~e~~~Wi~a 96 (109)
+...=+|..++.++...|+++
T Consensus 89 ~~~~~~F~~~~~~~A~~WL~e 109 (109)
T PF11964_consen 89 PIEVRYFPPDEEEEALAWLRE 109 (109)
T ss_dssp SSEEEEE--SSHHHHHHHHC-
T ss_pred CCceEEECCCCHHHHHHHHcC
Confidence 345779999999999999863
No 153
>KOG3521|consensus
Probab=21.20 E-value=86 Score=27.30 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=23.0
Q ss_pred ceEEEEEcCCHHHHHHHHHHHHHhhh
Q psy4640 77 MRTYYFAADTRESMIQWMNALSLASI 102 (109)
Q Consensus 77 ~r~y~fsA~s~~e~~~Wi~aI~~a~~ 102 (109)
.--|.+.|...++..+|.++|..|--
T Consensus 502 ~~ayt~hcs~p~d~~~W~D~l~~Aq~ 527 (846)
T KOG3521|consen 502 QAAYTMHCSGPEDTLRWTDMLKMAQD 527 (846)
T ss_pred hhhheeecCChhhHHHHHHHHHHHHH
Confidence 35799999999999999999998863
No 154
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=21.19 E-value=1.6e+02 Score=16.20 Aligned_cols=28 Identities=14% Similarity=-0.053 Sum_probs=16.8
Q ss_pred EEeeCCeEEEEcCCCCCcc-cEEEEcCCe
Q psy4640 26 SIGSRNGLAVTDRFEEEKL-LGSILLPSY 53 (109)
Q Consensus 26 ~vL~~~~L~yyk~~~d~~p-~G~I~L~~~ 53 (109)
.-++.+.|+++.+..+... .-.|+|.+.
T Consensus 26 lyiT~~~l~F~S~~~~~~~~~~~ipl~~I 54 (61)
T smart00568 26 LYISNYRLCFRSDLPGKLTPKVVIPLADI 54 (61)
T ss_pred EEEECCEEEEEccCCCCeeEEEEEEHHHe
Confidence 3567777777775544444 566666554
No 155
>COG5458 Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=1.1e+02 Score=20.72 Aligned_cols=16 Identities=19% Similarity=0.563 Sum_probs=13.5
Q ss_pred EEEEcCCHHHHHHHHH
Q psy4640 80 YYFAADTRESMIQWMN 95 (109)
Q Consensus 80 y~fsA~s~~e~~~Wi~ 95 (109)
...-|||.+|+.+|++
T Consensus 8 LcVGcdsieDL~eWi~ 23 (144)
T COG5458 8 LCVGCDSIEDLREWIA 23 (144)
T ss_pred hhhccCcHHHHHHHHH
Confidence 3567999999999994
No 156
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=20.00 E-value=78 Score=21.52 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=14.6
Q ss_pred CCceEEeeCCeEEEEcCC
Q psy4640 22 SDLDSIGSRNGLAVTDRF 39 (109)
Q Consensus 22 ~~~~~vL~~~~L~yyk~~ 39 (109)
+.|+.|+++.-++|||-.
T Consensus 53 StFylvvrd~diFyfk~d 70 (130)
T PF06138_consen 53 STFYLVVRDKDIFYFKCD 70 (130)
T ss_pred cEEEEEEecCcEEEEEec
Confidence 346679999999999944
Done!