RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4640
(109 letters)
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 81.0 bits (200), Expect = 2e-21
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+EE +LGSILLPS++I+ +S+D + RK++FKA H NMRTYYF DT + M WM A+
Sbjct: 57 KEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLD 116
Query: 100 ASILQNSS 107
A+++Q S
Sbjct: 117 AALVQTSG 124
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 80.2 bits (198), Expect = 4e-21
Identities = 33/70 (47%), Positives = 40/70 (57%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
EE +LGS+LLPSY I P R+F+F AEH MRTY AADT E + W+ AL
Sbjct: 47 REESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGR 106
Query: 100 ASILQNSSTG 109
AS + G
Sbjct: 107 ASRAEGDDYG 116
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 79.8 bits (197), Expect = 6e-21
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+EE +LGSI L S++++ D + RK +FKAEHA +RTY+F+A++ E W+ A+
Sbjct: 58 KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 117
Query: 100 ASILQ 104
A+ +Q
Sbjct: 118 AARVQ 122
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 78.6 bits (194), Expect = 1e-20
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+EE +LGSI L S++++ D + RK +FKAEHA +RTY+F+A++ E W+ A+
Sbjct: 47 KEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGE 106
Query: 100 ASILQ-NSSTG 109
A+ +Q S+G
Sbjct: 107 AARVQSGPSSG 117
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 75.1 bits (185), Expect = 2e-19
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
E+ L S L + ++ ++ F+ H M Y F AD S +W++A
Sbjct: 43 EDVAALESQPLLGFTVTLVKDENS--ESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQE 100
Query: 100 ASILQNSSTG 109
++ S+G
Sbjct: 101 GTV-SGPSSG 109
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 112
Score = 73.5 bits (180), Expect = 1e-18
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
++ +L +I LPS K+S ++++ +K + A +++Y +A + E QW+ LS
Sbjct: 45 QDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLSASSAELQQQWLETLST 103
Query: 100 AS 101
A+
Sbjct: 104 AA 105
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 72.5 bits (178), Expect = 3e-18
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVF-RKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
+ ++ G+ L+ Y + + ++ F+ + RTY F A + W++ +S
Sbjct: 42 KSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQIS 101
Query: 99 LA 100
Sbjct: 102 FL 103
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 69.8 bits (171), Expect = 5e-17
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFK-------AEHANMRTYYFAADTRESMIQ 92
E+ K G + LP I +++ + KF F+ +Y A ++ M +
Sbjct: 43 EDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEE 102
Query: 93 WMNALSLASILQNSSTG 109
W+ L S+G
Sbjct: 103 WVKFLRRV-AGSGPSSG 118
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 69.2 bits (169), Expect = 1e-16
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 98
++++ G + Y + ++ K +K F+ + R Y F A + + +W+ L
Sbjct: 56 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 115
Query: 99 LASILQNSST 108
S
Sbjct: 116 FILQDLGSDV 125
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 66.3 bits (162), Expect = 8e-16
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+ L S+ + + C + R +F+ ++ +A++ M +WM L
Sbjct: 39 TDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQ 98
Query: 100 A 100
A
Sbjct: 99 A 99
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 65.5 bits (160), Expect = 2e-15
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+ G I L ++ D R F FK + ++F A E W+ ++
Sbjct: 40 SDNSPKGMIPLKGSTLT-SPCQDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINK 98
Query: 100 A 100
A
Sbjct: 99 A 99
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 64.4 bits (157), Expect = 7e-15
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 40 EEEKLLGSILLPSYKISPCSSD---DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
E LG+I L ++ S+ K + F+ A+ Y+ A T + +W+ A
Sbjct: 55 GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 114
Query: 97 LSLASILQNSS 107
+ +AS S
Sbjct: 115 IQMASRTGKSG 125
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 65.2 bits (158), Expect = 2e-14
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRK-FSFKAEHANMRTYYFAADTRESMIQWMNALS 98
++++ G + Y + ++ K +K F+ + R Y F A + + +W+ L
Sbjct: 145 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 204
Query: 99 LA 100
Sbjct: 205 FI 206
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 62.4 bits (152), Expect = 3e-14
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 40 EEEKLLGSILLPSYKIS---PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
E LG+I L ++ S+ K + F+ A+ Y+ A T + +W+ A
Sbjct: 44 GAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKA 103
Query: 97 LSLAS 101
+ +AS
Sbjct: 104 IQMAS 108
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 61.3 bits (149), Expect = 1e-13
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 40 EEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
E++ L I L +K+ C D + R F+ + RT+Y AD+ E M W+ A+S
Sbjct: 49 LEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVS 107
Query: 99 LASILQNSS 107
A + Q
Sbjct: 108 GAIVAQRGP 116
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 59.6 bits (144), Expect = 8e-13
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
++ GSI L S ++ R+F+F+ + + +Y AAD+ M +W+ L+
Sbjct: 65 ISKEPKGSIFLDSCMGVVQNNKV---RRFAFELKMQDKSSYLLAADSEVEMEEWITILNK 121
Query: 100 ASILQNSST 108
L +
Sbjct: 122 ILQLNFEAA 130
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 57.2 bits (138), Expect = 3e-12
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 37 DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
DR + + L ++ P S D +SF+ H A + E M W+
Sbjct: 39 DRNRSKVAQQPLSLVGCEVVPDPSPD---HLYSFRILHKGEELAKLEAKSSEEMGHWLGL 95
Query: 97 LSLAS 101
L S
Sbjct: 96 LLSES 100
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 56.8 bits (137), Expect = 4e-12
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 40 EEEKLLGSILLPS--------YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 91
+ + + +P + D + + + +T A++ + +
Sbjct: 41 TRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCL 100
Query: 92 QWMNALSLA 100
W L +
Sbjct: 101 AWKFTLQDS 109
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 57.3 bits (138), Expect = 2e-11
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
EEKL G++ + S D ++ A+ RT++ A++ E QW + LS
Sbjct: 98 SEEKLKGTVEVRSA----KEIIDNTNKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQ 152
Query: 100 ASILQNSS 107
+
Sbjct: 153 VHSSTDQE 160
Score = 33.0 bits (75), Expect = 0.009
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 55 ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
I + D R SF AN R + ADT E M W+ L
Sbjct: 183 IDSVCASDSPDRPNSFVIITAN-RVLHCNADTPEEMHHWITLLQ 225
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 55.4 bits (133), Expect = 2e-11
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 40 EEEKLLGSILLPSY------KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQW 93
+ +G+ + S K+S + K F F +A + Y+ A+ ++ + W
Sbjct: 53 PQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFV-INALSQRYFLQANDQKDLKDW 111
Query: 94 MNALSLAS 101
+ AL+ AS
Sbjct: 112 VEALNQAS 119
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 54.1 bits (130), Expect = 8e-11
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVF------RKFSFKAEHANMRTYYFAADTRESMIQW 93
EE + +G L +S + + FK + YY A ++ +W
Sbjct: 56 EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEW 115
Query: 94 MNALSLASILQNSSTG 109
+ A+ + S+G
Sbjct: 116 IEAIK--KLTSGPSSG 129
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 53.6 bits (129), Expect = 8e-11
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
++ L SI L S + + F+ R A T+++M+ W+ L +
Sbjct: 47 QDANPLDSIDLSSAVFDCKADA----EEGIFEI-KTPSRVITLKAATKQAMLYWLQQLQM 101
Query: 100 ASILQNSST 108
++S
Sbjct: 102 KRWEFHNSP 110
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 53.6 bits (129), Expect = 9e-11
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 40 EEEKLLGSILLPS-----YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWM 94
+ + G I L + V K F + R Y F A S QW+
Sbjct: 45 MDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTR-RVYNFCAQDVPSAQQWV 103
Query: 95 NALSLASILQNSSTG 109
+ + + + S+G
Sbjct: 104 DRIQ-SCLSSGPSSG 117
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 53.8 bits (129), Expect = 9e-11
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 19/85 (22%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVF------------------RKFSFKAEHANMRTYY 81
+++ G I L + I K + + N Y
Sbjct: 40 TDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYR 99
Query: 82 FAADTRESMIQWMNALSLASILQNS 106
+A + E +WM ++ ASI ++
Sbjct: 100 ISAPSPEEKEEWMKSIK-ASISRDP 123
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 52.8 bits (127), Expect = 2e-10
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+ + G ILL S DK +K F +T+ +A ++ +W+ A+
Sbjct: 43 DLKDKKGDILL-DENCCVESLPDKDGKKCLFLV-KCFDKTFEISASDKKKKQEWIQAIHS 100
Query: 100 A-SILQNSSTG 109
+L+ S+G
Sbjct: 101 TIHLLKLGSSG 111
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 52.0 bits (124), Expect = 5e-10
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 21/82 (25%)
Query: 40 EEEKLLGSILLPSYKISPC--SSDDKVFRKFSF-------------------KAEHANMR 78
+ + +G I L + ++ + R+ +F + +
Sbjct: 45 KRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVT 104
Query: 79 TYYFAADTRESMIQWMNALSLA 100
+ +ADT+E WM L+
Sbjct: 105 KNWLSADTKEERDLWMQKLNQV 126
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 50.9 bits (122), Expect = 1e-09
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+ + + L S D R F RT+Y A T +W+ L
Sbjct: 53 MSPEPIRILDLTE--CSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRW 109
Query: 100 A 100
Sbjct: 110 K 110
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 50.4 bits (120), Expect = 2e-09
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 8/78 (10%)
Query: 40 EEEKLLGSILLPSYKIS--------PCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMI 91
+ +++ + R + A+TR+ I
Sbjct: 44 TAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAI 103
Query: 92 QWMNALSLASILQNSSTG 109
W AL A+ +
Sbjct: 104 AWKTALMEANSTPAPAGA 121
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 49.7 bits (119), Expect = 2e-09
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+E G I L + IS F+ RT+ F + E W++ L
Sbjct: 44 KEMYSKGIIPLSA--ISTVRVQ----GDNKFEVVT-TQRTFVFRVEKEEERNDWISILLN 96
Query: 100 ASILQNSS 107
A Q+ +
Sbjct: 97 ALKSQSLT 104
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain,
PIP2 binding site, structural genomics; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 126
Score = 49.9 bits (119), Expect = 3e-09
Identities = 13/78 (16%), Positives = 27/78 (34%)
Query: 24 LDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFA 83
L + + R ++ + + L Y + + +F T FA
Sbjct: 32 LVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFA 91
Query: 84 ADTRESMIQWMNALSLAS 101
+D + I W+ A+ A+
Sbjct: 92 SDDEQDRILWVQAMYRAT 109
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH
domain, lipid-binding, membrane, membrane protein; 1.90A
{Homo sapiens} PDB: 2kcj_A
Length = 103
Score = 49.0 bits (117), Expect = 3e-09
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+ GSI + +I S+D+ + + +Y A +W+ AL
Sbjct: 36 VCKGSKGSIKMAVCEIKVHSADNT-----RMELIIPGEQHFYMKAVNAAERQRWLVALGS 90
Query: 100 AS 101
+
Sbjct: 91 SK 92
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology,
lipid transport; NMR {Homo sapiens}
Length = 94
Score = 48.6 bits (116), Expect = 4e-09
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
E GSI L I+P D+ +F N +Y A + QW++A+
Sbjct: 38 TEYGCRGSICLSKAVITPHDFDEC---RFDI---SVNDSVWYLRAQDPDHRQQWIDAIEQ 91
Query: 100 A 100
Sbjct: 92 H 92
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Length = 125
Score = 48.1 bits (114), Expect = 1e-08
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY-------FAADTRESMIQ 92
EE++ + + + K+ + K F + R Y A +T+E +
Sbjct: 49 EEKEKKYMLSVDNLKLRDVE-KGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDS 107
Query: 93 WMNALSLASILQNSST 108
W + A +
Sbjct: 108 WKASFLRAGVYPERVG 123
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 48.0 bits (114), Expect = 1e-08
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 46 GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
S L + I S K +K + + AN + A M QW+ +L S
Sbjct: 65 PSYDLQNAAIEIASDYTK--KKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118
>2d9x_A Oxysterol binding protein-related protein 11; PH domain,
OSBP-related protein 11, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 120
Score = 48.0 bits (114), Expect = 1e-08
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 36 TDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95
++ +K G++ L ISP D +F A+ Y A + W++
Sbjct: 43 NEQSRNQKPRGTLQLAGAVISPSDED-----SHTFTVNAASGEQYKLRATDAKERQHWVS 97
Query: 96 ALSLAS 101
L + +
Sbjct: 98 RLQICT 103
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 47.3 bits (112), Expect = 2e-08
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 55 ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
K +K FK ++ Y F A E M W+ A+S A
Sbjct: 63 CEVALDYKK--KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 46.9 bits (111), Expect = 4e-08
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 44 LLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
G + + + + D RK FK + + Y F A M W+ ++ A
Sbjct: 59 YHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 46.0 bits (109), Expect = 9e-08
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 41 EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
++ L +S D RK + + Y D+ + W A++
Sbjct: 63 FSTPEYTVELRGATLSWAPKDKS-SRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 45.5 bits (107), Expect = 2e-07
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASI 102
+ I + + I S+ K RK F+ ++ F A+ R+ M+ W+ + +S
Sbjct: 55 EEEQPISVNACLIDISYSETK--RKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESSN 111
Query: 103 LQNSSTG 109
L TG
Sbjct: 112 LNEEDTG 118
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 44.5 bits (105), Expect = 4e-07
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 41 EEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
+ S+ L ++ R+ + +D + W AL
Sbjct: 65 GSRPESSVDLRGAALAHGRHLSS--RRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTV 122
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling
protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB:
3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Length = 120
Score = 44.2 bits (104), Expect = 4e-07
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 37 DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM------------RTYYFAA 84
DR ++ + S+ L ++ S + S ++ + + F A
Sbjct: 41 DRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKA 100
Query: 85 DTRESMIQWMNAL 97
D+ ESM+ W + L
Sbjct: 101 DSYESMMSWFDNL 113
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 44.3 bits (104), Expect = 6e-07
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 41 EEKLLGSILLPSYKI----SPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
++ G I + K K+ F+ H T Y A + +S W+
Sbjct: 57 KKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQSRDLWVKK 115
Query: 97 LSLA 100
L
Sbjct: 116 LKEE 119
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 137
Score = 43.9 bits (103), Expect = 7e-07
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 45 LGSILLPSYKISPCSSDDKVFRKFSFKAEH---ANMRTYYFAADTRESMIQWMNALSLAS 101
+ + L ++ P + +KF K M Y + +WM LAS
Sbjct: 54 IQQLNLKGCEVVPDVNVSG--QKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 44.6 bits (104), Expect = 9e-07
Identities = 7/81 (8%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 30 RNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE-HANMRTYYFAADTRE 88
+ G ++ + ++ + + + +D R++ F+ ++ A++++
Sbjct: 305 QGGNLMSQARGDVAGGLAMDIDNCSVMAVDCED---RRYCFQITSFDGKKSSILQAESKK 361
Query: 89 SMIQWMNAL--SLASILQNSS 107
+W+ + I + +
Sbjct: 362 DHEEWICTINNISKQIYLSEN 382
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin
activation, cytoplas membrane, cell adhesion; HET: SRT;
1.90A {Homo sapiens} PDB: 2lko_A*
Length = 173
Score = 43.6 bits (102), Expect = 1e-06
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAE---HANMRTYYFAADTRESMIQWMNA 96
+ L +++P + +KF+ K M + D + WM A
Sbjct: 87 SSGTPAHQMNLRGCEVTPDVNISG--QKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAA 144
Query: 97 LSLASILQ 104
LAS +
Sbjct: 145 CRLASKGK 152
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 43.8 bits (102), Expect = 2e-06
Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
++ + + + K + F F ++ + F ++ + W+ A+
Sbjct: 64 HNSVPKHAVWVENSIVQAVPEHPK--KDFVFCLSNSLGDAFLFQTTSQTELENWITAIHS 121
Query: 100 ASILQ 104
A
Sbjct: 122 ACAAA 126
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 43.8 bits (102), Expect = 2e-06
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 58 CSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSS 107
S + ++ F ++ Y F A ++ + W+ A+ A +
Sbjct: 80 QSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAK 129
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 42.1 bits (99), Expect = 2e-06
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 30 RNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRES 89
+NG+ + + L + ++ P + K SF + RTY+F A+ +
Sbjct: 35 KNGILTISHATSNRQPAKLNLLTCQVKPNAE-----DKKSFDLIS-HNRTYHFQAEDEQD 88
Query: 90 MIQWMNAL--SLASILQNSSTG 109
+ W++ L S L + +G
Sbjct: 89 YVAWISVLTNSKEEALTMAFSG 110
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology
domain, PKB, AKT, phosphoinositide,
serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo
sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A*
2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Length = 125
Score = 42.2 bits (99), Expect = 2e-06
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 37 DRFEEEKLLGSILLPSYKISPCSSD-DKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95
D + E L + + ++ F + RT++ +T E +W
Sbjct: 46 DVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVIERTFH--VETPEEREEWTT 103
Query: 96 ALSLAS 101
A+ +
Sbjct: 104 AIQTVA 109
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 149
Score = 41.6 bits (97), Expect = 5e-06
Identities = 7/59 (11%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 40 EEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97
+ + + + ++ +S +K KF+ + ES +W +
Sbjct: 53 KSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK---EEVQLKTENTESGEEWRGFI 108
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2;
hydrolase, phospholipase C, phosphoinositides, RHO
gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens}
PDB: 2w2w_A* 2w2x_C* 2k2j_A
Length = 124
Score = 40.9 bits (95), Expect = 7e-06
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 40 EEEKLLGSIL-----LPSYKISPCSSDDKVFRKFSFKAEHANM--RTYYFAADTRESMIQ 92
EE+ LGS+ L +Y + K + F F E FA D E + +
Sbjct: 51 EEDNPLGSLCRGILDLNTYNVVKAP-QGKNQKSFVFILEPKQQGDPPVEFATDKVEELFE 109
Query: 93 WMNAL 97
W ++
Sbjct: 110 WFQSI 114
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 40.9 bits (95), Expect = 8e-06
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 21/90 (23%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVF-------------RKFSFKAEH------ANMRTY 80
+ + +G++LL + +I S F K E +Y
Sbjct: 42 KNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSY 101
Query: 81 Y-FAADTRESMIQWMNALSLASILQNSSTG 109
A + WM+AL LA + S+G
Sbjct: 102 LIIRATSESDGRCWMDALELA-LKSGPSSG 130
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein
binding, structural genomics, NPPSFA; 1.70A {Mus
musculus}
Length = 126
Score = 40.0 bits (93), Expect = 2e-05
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 46 GSILLPSYKISPCSSDDKVFRKFSFKAEHANM-RTYYFAADTRESMIQWMNALSLAS 101
+ + + + + F+ + + Y F +R I W L A
Sbjct: 58 KKVSIVGWMVQLPDDPEH---PDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDAC 111
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 36.5 bits (83), Expect = 6e-04
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 23 DLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYF 82
D++ I + E+ + S ++ S ++ + F+ + Y
Sbjct: 56 DVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIER--FPYPFQVVYDE-GPLYV 112
Query: 83 AADTRESMIQWMNALSLAS 101
+ T E +W++ L
Sbjct: 113 FSPTEELRKRWIHQLKNVI 131
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 35.2 bits (80), Expect = 0.001
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 55 ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97
+ S+ F F + +T++F A + E W+ A+
Sbjct: 77 SASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAI 119
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH,
RAS-associating, pleckstrin-homology, adapter
phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Length = 256
Score = 35.5 bits (81), Expect = 0.001
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 8/69 (11%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFR---KFSFKAEHANMRT-----YYFAADTRESMI 91
L L I + K + + +R A+ ++
Sbjct: 170 APRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRT 229
Query: 92 QWMNALSLA 100
WM A L
Sbjct: 230 SWMTAFRLL 238
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP:
b.55.1.1
Length = 150
Score = 35.0 bits (80), Expect = 0.001
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 37 DRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANM--RTYYFAADTRESMIQWM 94
+ + L G + +P+ +I+ + K R F F ++ + AAD++E + W+
Sbjct: 82 NSPLGDLLRGVLDVPACQIAIRP-EGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWV 140
Query: 95 NAL 97
+
Sbjct: 141 KKI 143
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 34.2 bits (78), Expect = 0.005
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNAL 97
+L + +I+ ++ K +F+ + + F+A + E WM AL
Sbjct: 292 RLKEKFFMRKVQINDKDDTNEY--KHAFEIILKDENSVIFSAKSAEEKNNWMAAL 344
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 32.9 bits (74), Expect = 0.011
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 38 RFEEEKLLGSILLPS-YKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNA 96
R + SI L S + I+ + K + + AAD+ W A
Sbjct: 51 RHKSSAPKRSIPLESCFNINKRADSK---NKHLVAL-YTRDEHFAIAADSEAEQDSWYQA 106
Query: 97 LSLA 100
L
Sbjct: 107 LLQL 110
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 31.6 bits (71), Expect = 0.034
Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 7/73 (9%)
Query: 31 NGLAVTDRFEEEKLLGSILL----PSYKISPCSSDD--KVFRKFSFKAEHANMRTYYFAA 84
L + G + + Y + + R + FA
Sbjct: 296 RRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTPD-RKFLFAC 354
Query: 85 DTRESMIQWMNAL 97
+T +W+ A
Sbjct: 355 ETESDQREWVAAF 367
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin
homology domain, structural genomics; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 132
Score = 31.1 bits (70), Expect = 0.037
Identities = 8/60 (13%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 50 LPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLASILQNSSTG 109
+P + D+ F+ + + + + +WM L+ S+G
Sbjct: 74 IPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRL-TKSGPSSG 132
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 30.5 bits (69), Expect = 0.066
Identities = 4/53 (7%), Positives = 12/53 (22%)
Query: 46 GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
+ ++ D + A + E+ W+ +
Sbjct: 252 SKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIR 304
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 29.8 bits (67), Expect = 0.12
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 48 ILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
+ L + I ++D + F + + Y A T WM L A
Sbjct: 313 LKLNAVLIRSVATDKRAFFIICTS-KLGPPQIYELVALTSSDKNTWMELLEEA 364
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 29.8 bits (67), Expect = 0.13
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 46 GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
I L + + ++D+K F + Y A T W + +
Sbjct: 315 PVIKLSTVLVRQVATDNKAL--FVISMSDNGAQIYELVAQTVSEKTVWQDLICRM 367
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 29.2 bits (65), Expect = 0.24
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 46 GSILLPSYKISPCSSDDKVFRKFSFK---AEHANMRTYYFAADTRESMIQWMNALSLA 100
+ L S+++ SS D+ +K+S E + Y TRE +WM +A
Sbjct: 448 DFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMA 505
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 28.6 bits (64), Expect = 0.37
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 46 GSILLPSYKISPCSSDDKVFRKFSFK---AEHANMRTYYFAADTRESMIQWMNALSLA 100
S+ L S+++ SS ++ +K+S E + Y TRE +WM +A
Sbjct: 276 ASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMA 333
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 28.7 bits (64), Expect = 0.37
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 46 GSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
+ L + I ++D + F + + Y A T WM L A
Sbjct: 353 PVLKLNAVLIRSVATDKRAFFIICTS-KLGPPQIYELVALTSSDKNTWMELLEEA 406
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein,
dimerization, SIG protein; HET: PTR; 2.60A {Mus
musculus}
Length = 224
Score = 27.5 bits (60), Expect = 0.71
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 37 DRFEEEKLLGSILLPSY-KISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMN 95
+R + + S+ L + P + + + + D+ E+M W
Sbjct: 50 ERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICLS---QAVMLGFDSHEAMCAWDT 106
Query: 96 ALS 98
+
Sbjct: 107 RIR 109
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 27.5 bits (61), Expect = 0.74
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+ L + L S ++D K F + + Y A T W ++
Sbjct: 311 GKTMLRPVLRLTSAMTREVATDHKAF--YVLFTWDQEAQIYELVAQTVSERKNWCALITE 368
Query: 100 A 100
Sbjct: 369 T 369
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 27.1 bits (60), Expect = 0.78
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 43 KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSLA 100
+ L + + + K FK + F A+ + +W+ L
Sbjct: 51 RYNALYPLDRLAVVNVKDNPPM--KDMFKLLMFP-ESRIFQAENAKIKREWLEVLEET 105
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 27.6 bits (61), Expect = 0.90
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 46 GSILLPSYKISPCSSDD----KVFRKFSFKAEHANM-RTYYFAADTRESMIQWMNALSLA 100
G + + ++ V K +F+ ++ E +W+ A +
Sbjct: 379 GRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFARE 438
Query: 101 S--ILQNSSTG 109
+ + TG
Sbjct: 439 REQVQLDQETG 449
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 27.2 bits (59), Expect = 0.94
Identities = 4/44 (9%), Positives = 11/44 (25%)
Query: 55 ISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
+ + + +F + N Y W+ +
Sbjct: 83 VRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQ 126
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 26.8 bits (59), Expect = 1.2
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 29 SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY---FAAD 85
S G+ +TD + + Y+IS C++D + F++ A+ + F
Sbjct: 51 SPRGIILTDSLTSQLIENV---SIYRISYCTADKMHDKVFAYIAQSQQNESLECHAFLCT 107
Query: 86 TRE 88
R+
Sbjct: 108 KRK 110
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 26.5 bits (58), Expect = 1.4
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 63 KVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALS 98
++F+ ++ + A++ E +W++ L
Sbjct: 76 RIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLV 111
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 24.8 bits (54), Expect = 1.7
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 78 RTYYFAADTRESMIQW 93
+ YY+ A TRES W
Sbjct: 21 KVYYYNARTRES--AW 34
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 26.6 bits (59), Expect = 1.9
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 31 NGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESM 90
L + D + E LG L + + K F + SFK + +T+ A+ +
Sbjct: 279 KDLTLEDLQDGEVRLGGSLRGA---FSNNERVKNFFRVSFKNGSQS-QTHSLQANDTFNK 334
Query: 91 IQWMNALSLA 100
QW+N + A
Sbjct: 335 QQWLNCIRQA 344
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 24.8 bits (54), Expect = 2.1
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 73 EHANM--RTYYFAADTRESMIQW 93
EH + RTYY+ +T++S W
Sbjct: 16 EHKSPDGRTYYYNTETKQS--TW 36
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 25.9 bits (57), Expect = 2.7
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 5/56 (8%)
Query: 35 VTDRFEEE---KLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY--FAAD 85
+ E + ++ I + + F F H ++ TY +
Sbjct: 36 LDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLGE 91
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 26.1 bits (57), Expect = 2.7
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 7 DFLSSSSPSSRKSVGSDLDSIGSRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFR 66
DFL + + +V S + + S A ++ L +L+ D
Sbjct: 275 DFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKL-------PTDPSSD 327
Query: 67 KFSFKAEHANMRTYYFAADTRESMIQWMNALSLAS 101
+ F H + R Y D W+ + AS
Sbjct: 328 EPVFHISHID-RVYTLRTDNINERTAWVQKIKAAS 361
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 23.9 bits (52), Expect = 3.6
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 78 RTYYFAADTRESMIQW 93
+TYY+ T ES W
Sbjct: 17 KTYYYNNRTLES--TW 30
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 25.4 bits (55), Expect = 4.2
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 40 EEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYYFAADTRESMIQWMNALSL 99
+ L + L S ++D K F + Y A T W ++
Sbjct: 464 GKTMLRPVLRLTSAMTREVATDHKAFYVLF--TWDQEAQIYELVAQTVSERKNWCALITE 521
Query: 100 A 100
Sbjct: 522 T 522
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus
musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Length = 152
Score = 25.2 bits (55), Expect = 4.3
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 29 SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY 81
S G+ + D ++IS + D R F + +
Sbjct: 68 SFGGIKIFDEKTGALQHH---HAVHEISYIAKDITDHRAFGYVCGKEGNHRFV 117
>2o28_A Glucosamine 6-phosphate N-acetyltransferase; structural genomics,
structural genomics consortium, SGC; HET: 16G COA; 1.80A
{Homo sapiens} PDB: 2huz_A* 3cxq_A* 3cxs_A 3cxp_A
Length = 184
Score = 24.5 bits (53), Expect = 7.8
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 53 YKISPCSSDDKV--FRKFSFKAEHANMRTYYF 82
YKI+ V ++KF + N F
Sbjct: 151 YKITLECLPQNVGFYKKFGYTVSEENYMCRRF 182
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus}
SCOP: b.55.1.2 PDB: 1m7e_A
Length = 160
Score = 24.2 bits (52), Expect = 9.8
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 29 SRNGLAVTDRFEEEKLLGSILLPSYKISPCSSDDKVFRKFSFKAEHANMRTYY 81
S +G+ + D P KIS + D R F + ++
Sbjct: 67 SLSGIKIIDEKTGVIEH---EHPVNKISFIARDVTDNRAFGYVCGGEGQHQFF 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.127 0.356
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,503,785
Number of extensions: 73131
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 86
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)